install pnetcdf with openmpi with -fdefault-integer-8

[Zeinab Salah]

Thank you for your replay,
So I need to reinstall openmpi with default configuration. another thing,
why the new versions of openmpi don't accept this option
"--with-mpi-f90-size=medium"?

Best regards,
Zeinab


‫في الاثنين، 24 سبتمبر 2018 في 4:51 ص تمت كتابة ما يلي بواسطة ‪Wei-keng
Liao‬‏ <‪wkliao at eecs.northwestern.edu‬‏>:‬

> Hi Zeinab
>
> PnetCDF currently does not support MPI Fortran compilers built with
> -fdefault-integer-8.
> It is a future work for PnetCDF.
>
> Wei-keng
>
> > On Sep 23, 2018, at 4:44 PM, Zeinab Salah <zeinabsalah at gmail.com> wrote:
> >
> > Hi again,
> > Sorry, I didn't say that, the version of openmpi is 3.0.2 and pnetcdf is
> 1.10.0. The installation was successfully completed but the include
> directory is not completed. The config.log files of openmpi and pnetcdf are
> attached.
> > the commands of install pnetcdf:
> > export FC=/usr/bin/gfortran
> > export F90=/usr/bin/gfortran
> > export F77=/usr/bin/gfortran
> > export CC=/usr/bin/gcc
> > export CXX=/usr/bin/g++
> > export MPICC=/home/dream/CHIMERE/chimere_lib/openmpi/bin/mpicc
> > export MPICXX=/home/dream/CHIMERE/chimere_lib/openmpi/bin/mpicxx
> > export MPIF77=/home/dream/CHIMERE/chimere_lib/openmpi/bin/mpif77
> > export MPIF90=/home/dream/CHIMERE/chimere_lib/openmpi/bin/mpif90
> > export CFLAGS='-O -m64 -mcmodel=medium'
> > export CXXFLAGS='-O -m64 -mcmodel=medium'
> > export FFLAGS='-O -g -m64 -fno-second-underscore -mcmodel=medium'
> > export FCLAGS='-O -g -m64 -fno-second-underscore -mcmodel=medium'
> > export LDFLAGS='-O -g -m64 -fno-second-underscore -mcmodel=medium'
> > ./configure --prefix=/home/dream/CHIMERE/chimere_lib/pnetcdf
> --disable-in-place-swap --enable-large-req
> --with-mpi=/home/dream/CHIMERE/chimere_lib/openmpi
> > make
> > make tests
> > make check
> > make ptest
> > make ptests
> > make install
> >
> > Thank you in advance.
> > Best regards,
> > Zeinab
> >
> > ‫في السبت، 22 سبتمبر 2018 في 12:03 م تمت كتابة ما يلي بواسطة ‪Zeinab
> Salah‬‏ <‪zeinabsalah at gmail.com‬‏>:‬
> > Hello,
> > I want to install pnetcdf with openmpi with -fdefault-integer-8,  but I
> found the problem of offset, and it installed without error, some files in
> include directory are missing
> > my machine is little endian, and operating system is Fedora, and I
> changed many versions of openmpi  and pnetcdf, and give me the same error.
> > the commands used to install openmpi:
> > export F77=gfortran
> > export FC=gfortran
> > export CC=gcc
> > export CXX=g++
> > export CFLAGS=-m64
> > export CXXFLAGS=-m64
> > export FFLAGS="-m64 -fdefault-integer-8"
> > export FCFLAGS="-m64 -fdefault-integer-8"
> > ./configure --prefix=$HOME/openmpi --with-mpi-f90-size=medium
> > make all
> > make install
> > Thank you in advance,
> > Best regards
> > Zeinab
> >
> > <config.log_pnetcdf><config.log_openmpi>
>
>
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