With intel 2015.1.133 and gcc 5.1.0 in the path, error on make check with cxx interface

[Nick Papior Andersen]

Openmpi is indeed compiled with shared libraries. I will disable that.
Thanks!

I will try and recompile with non-shared libraries (however, the test is
still non-mpi called, hence the recommendation shouldn't affect this
output, no?)

Ok, I will, for now assume this is compiler/architecture specific. If I can
reproduce the error on our other cluster I will let you know.
Expect it to be resolved unless I return ;)

2015-06-02 17:18 GMT+02:00 Wei-keng Liao <wkliao at eecs.northwestern.edu>:

> Hi, Nick
>
> I found a Xeon machine that has icc and built 1.6.0 without errors.
> icc version 15.0.2 (gcc version 4.4.7 compatibility)
>
> I also notice from your config.log that CFLAGS was set even you did not
> set it at configure command line. If you search keyword for
> "ac_cv_env_CFLAGS_value", you can see it contains compile options
> "-m64 -fPIC -O2 -xHost -prec-div ... " See lines 72 and 3419.  In my case,
> that variable is empty.
> Something strange in configure triggers the setting of use these explicit
> compile options.
> Maybe you should regenerate file configure by running command "autoreconf".
>
> The option -fPIC is for building share libraries, which I suspect is the
> cause of error you are seeing. I built my OpenMPI 1.8.5 with configure
> option "--enable-static --disable-shared".
> I was seeing problems when I used an OpenMPI with shared library option
> enabled to build netCDF or HDF5, so I disable it. (I remember shared option
> is discouraged by parallel HDF5.)
> Do you know how your OpenMPI was built?
>
>
> Wei-keng
>
> On Jun 2, 2015, at 9:29 AM, Nick Papior Andersen wrote:
>
> >
> >
> > 2015-06-02 16:25 GMT+02:00 Rob Latham <robl at mcs.anl.gov>:
> >
> >
> > On 06/02/2015 02:58 AM, Nick Papior Andersen wrote:
> > ./nctst        ./testfile.nc <http://testfile.nc>
> > ncmpi_inq_typeids not implemented
> > [n-62-12-2:21767] *** Process received signal ***
> > [n-62-12-2:21767] Signal: Segmentation fault (11)
> > [n-62-12-2:21767] Signal code: Address not mapped (1)
> > [n-62-12-2:21767] Failing at address: 0xffffffffffffffe8
> > [n-62-12-2:21767] [ 0] /lib64/libpthread.so.0(+0xf710)[0x2b3e93945710]
> > [n-62-12-2:21767] [ 1]
> >
> /zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(_ZNSo6sentryC2ERSo+0x19)[0x2b3e934ace79]
> > [n-62-12-2:21767] [ 2]
> >
> /zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(_ZSt16__ostream_insertIcSt11char_traitsIcEERSt13basic_ostreamIT_T0_ES6_PKS3_l+0x29)[0x2b3e934ad589]
> > [n-62-12-2:21767] [ 3]
> >
> /zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(_ZStlsISt11char_traitsIcEERSt13basic_ostreamIcT_ES5_PKc+0x27)[0x2b3e934ad9e7]
> > [n-62-12-2:21767] [ 4] ./nctst[0x40ad62]
> > [n-62-12-2:21767] [ 5] ./nctst[0x40b93c]
> > [n-62-12-2:21767] [ 6]
> > /lib64/libc.so.6(__libc_start_main+0xfd)[0x2b3e93d76d5d]
> > [n-62-12-2:21767] [ 7] ./nctst[0x405899]
> > [n-62-12-2:21767] *** End of error message ***
> >
> > I understand the oddity here is that inq_typids is getting called
> somehow, and so the backtrace is in some ways irrelevant.  I ran it through
> c++filt anyway:
> > I agree completely.
> >
> >
> > ./nctst        ./testfile.nc
> > ncmpi_inq_typeids not implemented
> > [n-62-12-2:21767] *** Process received signal ***
> > [n-62-12-2:21767] Signal: Segmentation fault (11)
> > [n-62-12-2:21767] Signal code: Address not mapped (1)
> > [n-62-12-2:21767] Failing at address: 0xffffffffffffffe8
> > [n-62-12-2:21767] [ 0] /lib64/libpthread.so.0(+0xf710)[0x2b3e93945710]
> > [n-62-12-2:21767] [ 1]
> /zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(std::basic_ostream<char,
> std::char_traits<char> >::sentry::sentry(std::basic_ostream<char,
> std::char_traits<char> >&)+0x19)[0x2b3e934ace79]
> > [n-62-12-2:21767] [ 2]
> /zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(std::basic_ostream<char,
> std::char_traits<char> >& std::__ostream_insert<char,
> std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char>
> >&, char const*, long)+0x29)[0x2b3e934ad589]
> > [n-62-12-2:21767] [ 3]
> /zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(std::basic_ostream<char,
> std::char_traits<char> >& std::operator<< <std::char_traits<char>
> >(std::basic_ostream<char, std::char_traits<char> >&, char
> const*)+0x27)[0x2b3e934ad9e7]
> > [n-62-12-2:21767] [ 4] ./nctst[0x40ad62]
> > [n-62-12-2:21767] [ 5] ./nctst[0x40b93c]
> > [n-62-12-2:21767] [ 6]
> /lib64/libc.so.6(__libc_start_main+0xfd)[0x2b3e93d76d5d]
> > [n-62-12-2:21767] [ 7] ./nctst[0x405899]
> > [n-62-12-2:21767] *** End of error message ***
> >
> > --
> > Rob Latham
> > Mathematics and Computer Science Division
> > Argonne National Lab, IL USA
> >
> >
> >
> > --
> > Kind regards Nick
>
>


-- 
Kind regards Nick
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