trouble testing/running with gnu/5.1.0

[Nick Papior]

Let me assert, I have p-netcdf running tests successfully with openmpi
1.8.5 and gnu-5.1.0 :)


2015-07-20 18:53 GMT+00:00 Jim Edwards <jedwards at ucar.edu>:

> I think that you are correct I switched to pgi and got the same error -  I
> can try on another platform.
>
> The pgi config.log is attached...
>
>
> On Mon, Jul 20, 2015 at 12:48 PM, Wei-keng Liao <
> wkliao at eecs.northwestern.edu> wrote:
>
>> Hi, Jim
>>
>> I suspect it is caused by an old MPI.
>> Can you send me your config.log file?
>>
>> Wei-keng
>>
>> On Jul 20, 2015, at 12:36 PM, Jim Edwards wrote:
>>
>> > I am getting an error when trying to build with gnu/5.1.0
>> > ​the traceback looks like:
>> > #6  0x00000000014fb478 in ncmpii_in_swapn ()
>> > #7  0x00000000014cd6be in ncmpii_getput_vars ()
>> > #8  0x00000000014d9b64 in ncmpi_put_vara_int_all ()
>> > #9  0x00000000014baf57 in nfmpi_put_vara_int_all_ ()
>> > #10 0x00000000013f61e2 in __pionfput_mod_MOD_put_vara_1d_int ()
>> >
>> > If I try to run the tests with this build I get a hang in the
>> sequentiol tests:
>> > poe  ./nc_test -v -d       .
>> >
>> >    2:*** Testing test_ncmpi_strerror            ...   33 good
>> comparisons. ok
>> >
>> >    0:*** Testing test_ncmpi_strerror            ...   33 good
>> comparisons. ok
>> >
>> >    1:*** Testing test_ncmpi_strerror            ...   33 good
>> comparisons. ok
>> >
>> >    3:*** Testing test_ncmpi_strerror            ...   33 good
>> comparisons. ok
>> >
>> >    0:
>> >
>> >    1:
>> >
>> >    2:
>> >
>> >    2: FAILURE at line 149 of test_read.c: remove of ./scratch.nc
>> failed*** Testing test_ncmpi_open                ...
>> >
>> >    2: ### 1 FAILURES TESTING test_ncmpi_open! Stop ... ###
>> >
>> >    0:*** TESTING C   ./nc_test for format CDF-1
>>  ------ failed
>> >
>> >    0:
>> >
>> >    0: FAILURE at line 149 of test_read.c: remove of ./scratch.nc
>> failed*** Testing test_ncmpi_open                ...
>> >
>> >    0: ### 1 FAILURES TESTING test_ncmpi_open! Stop ... ###
>> >
>> >    0:
>> >
>> >    0:./nc_test: expects 0 failures ... Total number of failures: 1
>> >
>> >    1:*** TESTING C   ./nc_test for format CDF-1
>>  ------ failed
>> >
>> >    1:
>> >
>> >    1: FAILURE at line 149 of test_read.c: remove of ./scratch.nc
>> failed*** Testing test_ncmpi_open                ...
>>
>> >
>> >    1: ### 1 FAILURES TESTING test_ncmpi_open! Stop ... ###
>> >
>> >    1:
>> >
>> >    1:./nc_test: expects 0 failures ... Total number of failures: 1
>> >
>> >    2:*** TESTING C   ./nc_test for format CDF-1
>>  ------ failed
>> >
>> >    2:
>> >
>> >    2:
>> >
>> >    2:./nc_test: expects 0 failures ... Total number of failures: 1
>> >
>> >    3:*** Testing test_ncmpi_open                ...    5 good
>> comparisons. ok
>> >
>> > and the parallel test fail in the build step with:
>> >
>> > glade/apps/opt/modulefiles/ys/cmpwrappers/mpif90 -c -g  -O0
>> -I../../src/lib  -I../../src/libf -I../../src/libf90  mcoll_testf.f90
>> >
>> > mcoll_testf.f90:257:22:
>> >
>> >
>> >
>> >          t1 = MPI_Wtime ( )
>> >
>> >                       1
>> >
>> > Error: Name 'mpi_wtime' at (1) is an ambiguous reference to 'mpi_wtime'
>> from module 'mpi_constants'
>> >
>> > mcoll_testf.f90:292:22:
>> >
>> >
>> >
>> >          t2 = MPI_Wtime ( )
>> >
>> >                       1
>> >
>> > Error: Name 'mpi_wtime' at (1) is an ambiguous reference to 'mpi_wtime'
>> from module 'mpi_constants'
>> >
>> > mcoll_testf.f90:313:20:
>> >
>> >
>> >
>> >        t3 = MPI_Wtime ( )
>> >
>> >                     1
>> >
>> > Error: Name 'mpi_wtime' at (1) is an ambiguous reference to 'mpi_wtime'
>> from module 'mpi_constants'
>> >
>> > All with svn revision 2056​
>> >
>> >
>> >
>> > --
>> > Jim Edwards
>> >
>> > CESM Software Engineer
>> > National Center for Atmospheric Research
>> > Boulder, CO
>>
>>
>
>
> --
> Jim Edwards
>
> CESM Software Engineer
> National Center for Atmospheric Research
> Boulder, CO
>



-- 
Kind regards Nick
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