Building errors relating to undefined reference of 'nfmpi_*'

Li Dong dongli at lasg.iap.ac.cn
Thu May 30 20:08:24 CDT 2013


Dear Wei-keng,

Thank you for helping! Here is the output in the attachment.

Li



-----------------------------------------
Dr. Li Dong (董理)
LASG, Institute of Atmospheric Physics
Chinese Academy of Sciences
P.O. Box 9804
Beijing 100029, China
Phone: 8610-8299 5143

在 2013-5-30,下午10:43,Wei-keng Liao <wkliao at ece.northwestern.edu> 写道:

> Hi, Li
> 
> It looks like the fortran part of PnetCDF failed to build.
> Could you send us the standard output from the screen when you run "make" command?
> You can do the following command and send us the file "make.output".
> 
> make -s clean; make >& make.output
> 
> 
> Wei-keng
> 
> On May 30, 2013, at 2:48 AM, Li Dong wrote:
> 
>> Dear PnetCDF supporters,
>> 
>> When I build parallel-netcdf on our server, I invoked 'make tests' after 'make' and encountered the following errors:
>> 
>> /apps/intel/impi/4.0.2.003/intel64/bin/mpiifort -o bigrecords bigrecords.o -L../../src/lib  -lpnetcdf
>> bigrecords.o: In function `MAIN__':
>> bigrecords.F:(.text+0xb0): undefined reference to `nfmpi_create_'
>> bigrecords.F:(.text+0xe6): undefined reference to `nfmpi_def_dim_'
>> bigrecords.F:(.text+0x12b): undefined reference to `nfmpi_def_dim_'
>> bigrecords.F:(.text+0x170): undefined reference to `nfmpi_def_dim_'
>> bigrecords.F:(.text+0x1c2): undefined reference to `nfmpi_def_var_'
>> bigrecords.F:(.text+0x214): undefined reference to `nfmpi_def_var_'
>> bigrecords.F:(.text+0x282): undefined reference to `nfmpi_def_var_'
>> bigrecords.F:(.text+0x2d3): undefined reference to `nfmpi_put_att_text_'
>> bigrecords.F:(.text+0x324): undefined reference to `nfmpi_put_att_text_'
>> bigrecords.F:(.text+0x375): undefined reference to `nfmpi_put_att_text_'
>> bigrecords.F:(.text+0x3c6): undefined reference to `nfmpi_put_att_text_'
>> bigrecords.F:(.text+0x417): undefined reference to `nfmpi_put_att_text_'
>> bigrecords.o:bigrecords.F:(.text+0x468): more undefined references to `nfmpi_put_att_text_' follow
>> bigrecords.o: In function `MAIN__':
>> bigrecords.F:(.text+0x486): undefined reference to `nfmpi_enddef_'
>> bigrecords.F:(.text+0x4d2): undefined reference to `nfmpi_put_vara_real_all_'
>> bigrecords.F:(.text+0x557): undefined reference to `nfmpi_put_vara_double_all_'
>> bigrecords.F:(.text+0x57e): undefined reference to `nfmpi_close_'
>> bigrecords.F:(.text+0x5c2): undefined reference to `nfmpi_open_'
>> bigrecords.F:(.text+0x5f2): undefined reference to `nfmpi_inq_varid_'
>> bigrecords.F:(.text+0x63e): undefined reference to `nfmpi_get_vara_double_all_'
>> bigrecords.F:(.text+0x65c): undefined reference to `nfmpi_close_'
>> bigrecords.o: In function `writerecs_':
>> bigrecords.F:(.text+0x1165): undefined reference to `nfmpi_put_vara_double_all_'
>> ../../src/lib/libpnetcdf.a(strerrorf.o): In function `nfmpi_strerror_':
>> strerrorf.f:(.text+0x15): undefined reference to `nfmpi_xstrerror_'
>> make[2]: *** [bigrecords] Error 1
>> 
>> The config.log file is in the attach and the results of 'uname -a' are:
>> 
>> Linux ln1 2.6.18-194.17.1.0.1.el5_lustre.1.8.5 #1 SMP Wed Aug 3 18:09:09 CST 2011 x86_64 x86_64 x86_64 GNU/Linux
>> 
>> How to solve this problem? Thanks in advance!
>> 
>> Best regards,
>> 
>> Li
>> 
>> <config.log>
>> 
>> -----------------------------------------
>> Dr. Li Dong (董理)
>> LASG, Institute of Atmospheric Physics
>> Chinese Academy of Sciences
>> P.O. Box 9804
>> Beijing 100029, China
>> Phone: 8610-8299 5143
>> 
> 

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