parallel netcdf largefile problem on huygens.sara.nl
Galen Arnold
arnoldg at ncsa.uiuc.edu
Tue Jul 14 11:36:00 CDT 2009
I've built parallel netcdf 1.0.3 on huygens.sara.nl [a power6 machine running linux]. Even though the build claims largefile support:
arnoldg at p6012:~/parallel-netcdf-1.0.3> grep off_t config.log
configure:8287: checking for off_t
configure:12729: checking for off_t
configure:12787: checking size of off_t
ac_cv_sizeof_off_t=8
ac_cv_type_off_t=yes
arnoldg at p6012:~/parallel-netcdf-1.0.3> tail galen.config
parallel-netCDF features:
. parallel-netcdf configured WITH support for large files
. parallel-netcdf configured WITH fortran bindings
. parallel-netcdf configured WITH nonblocking routines
arnoldg at p6012:~/parallel-netcdf-1.0.3>
...runtime errors occur unless I keep the filesize < 2G :
51:** error **
37:** error **
45:** error **
49:** error **
51:ERROR in IOR.c (line 2165): file size must be < 2GiB.
51:ERROR: Success
51:** exiting **
58:** error **
33:** error **
33:ERROR in IOR.c (line 2165): file size must be < 2GiB.
33:ERROR: Success
33:** exiting **
13:** error **
58:ERROR in IOR.c (line 2165): file size must be < 2GiB.
58:ERROR: Success
58:** exiting **
I manually set these for configure and parallel-netcdf just built ok after that:
arnoldg at p6012:~/parallel-netcdf-1.0.3> echo $CC
xlc_r
arnoldg at p6012:~/parallel-netcdf-1.0.3> echo $MPICC
mpcc
arnoldg at p6012:~/parallel-netcdf-1.0.3> echo $F77
xlf_r
arnoldg at p6012:~/parallel-netcdf-1.0.3> echo $MPIF77
mpfort
arnoldg at p6012:~/parallel-netcdf-1.0.3>
Any ideas about what to try next ?
Galen Arnold
system engineer
NCSA
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