0.9.0 installation

Mon Sep 8 14:43:24 CDT 2003

See below.

Jianwei Li wrote:
> John,
> 
> I didn't see any MPICC in your environment vars.
> You can work directly on the old-version library build tree,
> but you need to set those environment vars everytime you re-login.
> It would be better you run a fresh build for the new lib release.
> 
> Can you try these steps again?
>     	setenv MPICC mpicc
>     	setenv MPIF77 mpif77
>     	setenv CFLAGS -O
>     	setenv FFLAGS '-O -W'
> 

Untarred a fresh copy of 0.9.0; did the above; plus an autoconf for
good measure.

> 	./configure --prefix=/whatever
> 

Got the following:

checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for uchar... yes
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking for short... yes
checking size of short... 2
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 8
checking for float... yes
checking size of float... 4
checking for double... yes
checking size of double... 8
checking size of off_t... 8
checking size of size_t... 8
checking for Fortran "byte"... yes
checking for Fortran "integer*2"... yes
checking if Fortran "byte" is C "signed char"... f77: Severe: Failed while 
trying to link.
configure: error: Could not link conftestf.o and conftest.o

> 	./make
> 	./make install
> 
> Or if you are compiling MPI program using "gcc -lmpi",
> you can set the LD library options in CFLAGS env,
> e.g. "setenv CFLAGS '-O -lmpi'".
> 

Not sure at all what you mean by this; would need more info to try it.
Will be leaving in about 20 minutes; out the rest of the day.

> Jianwei
> 
> On Mon, 8 Sep 2003, John Tannahill wrote:
> 
> 
>>Rob,
>>
>>Thanks for the quick response.  I did not change anything, just did
>>./configure --prefix=/whatever & then ran make. I have included the
>>output from my executing "printenv" below.
>>
>>John
>>
>>/g/g17/jrt/pnetcdf/parallel-netcdf-0.9.0[30]: printenv
>>USER=jrt
>>LOGNAME=jrt
>>HOME=/g/g17/jrt
>>PATH=/usr/local/bin:/usr/bin:/usr/ccs/bin:/usr/bin/X11:/usr/apps/bin:/usr/gapps/
>>bin:.:/usr/bin/X11:/g/g17/jrt/gem/bin:/g/g17/jrt/gem/esm_tools/bin:/g/g17/jrt/ge
>>m/actm/impact/Other/scripts:/g/g17/jrt/bin:.
>>MAIL=/var/spool/mail/jrt
>>SHELL=/bin/csh
>>SSH_CLIENT=128.115.57.123 38445 922
>>SSH_CONNECTION=128.115.57.123 38445 134.9.1.183 922
>>SSH_TTY=/dev/pts/8
>>TERM=xterm
>>DISPLAY=localhost:17.0
>>SHLVL=1
>>MANPATH=/usr/local/man:/usr/man:/usr/apps/man
>>HOST_GRP=compaq
>>SYS_TYPE=tru64_5sc
>>ENVIRONMENT=INTERACTIVE
>>TMPDIR=/var/tmp/jrt
>>TMP=/var/tmp/jrt
>>LM_LICENSE_FILE=/usr/local/etc/license.client
>>ARCHITECTURE=ARCH_COMPAQ
>>HOSTMACH=tckk_machine
>>GEMHOME=/g/g17/jrt/gem
>>IMP_DATA=/g/g17/jrt/imp_data
>>LPDEST=hpchem
>>PRINTER=hpchem
>>WRK=/g/g17/jrt
>>GLOGIN=1
>>EDITOR=/usr/bin/vi
>>EXINIT=set nowrapscan ignorecase report=1 showmode
>>
>>
>>Rob Ross wrote:
>>
>>>Hi John,
>>>
>>>Could you send all the environment variables and such that you set?
>>>
>>>It looks like maybe MPICC wasn't set?  That ld output is vague, but I
>>>think it's saying that i couldn't find those symbols.
>>>
>>>Otherwise this is similar to the issues that Reiner was seeing (i.e. we
>>>need LIBS on the MPI compile lines).
>>>
>>>We're trying to collect all these little issues so we can make another
>>>release that addresses all the configure/build quirks that people are
>>>seeing.
>>>
>>>It's nice that we're down to this though!  Next thing you know everything
>>>will build fine, and we will only be worried about performance :)!
>>>
>>>Regards,
>>>
>>>Rob
>>>
>>>On Mon, 8 Sep 2003, John Tannahill wrote:
>>>
>>>
>>>
>>>>I have had pretty good success running a bunch of timings (different file
>>>>sizes, different numbers of processors) of 0.9.0 on NERSC's IBM SP.  I am
>>>>now trying to install 0.9.0 on a Compaq Teracluster 2000 that we have.  It
>>>>looks like I have installed older versions (not sure exactly what I had to
>>>>do?), but when I try to run the "make" on this version, I get the output
>>>>below.  Can anyone help me out?
>>>>
>>>>Note that the ./configure --prefix=... seemed to work fine (did not run
>>>>autoconf); also did not use the --with-mpi=... argument.
>>>>
>>>>Thanks,
>>>>John
>>>>
>>>>/g/g17/jrt/pnetcdf/parallel-netcdf-0.9.0[29]: make
>>>>
>>>>Making `all' in directory /g/g17/jrt/pnetcdf/parallel-netcdf-0.9.0/src
>>>>
>>>>cd lib && make
>>>>gcc -c -O -I.   -DNDEBUG mpinetcdf.c
>>>>gcc -c -O -I.   -DNDEBUG header.c
>>>>gcc -c -O -I.   -DNDEBUG mpincio.c
>>>>gcc -c -O -I.   -DNDEBUG attr.c
>>>>gcc -c -O -I.   -DNDEBUG dim.c
>>>>gcc -c -O -I.   -DNDEBUG error.c
>>>>gcc -c -O -I.   -DNDEBUG nc.c
>>>>gcc -c -O -I.   -DNDEBUG ncx.c
>>>>gcc -c -O -I.   -DNDEBUG string.c
>>>>gcc -c -O -I.   -DNDEBUG var.c
>>>>ar cru libpnetcdf.a mpinetcdf.o  header.o  mpincio.o  attr.o  dim.o  error.o  nc
>>>>.o  ncx.o  string.o  var.o
>>>>ranlib libpnetcdf.a
>>>>m4 -B10000 -DAPI=C ./../../man/netcdf.m4 >pnetcdf.3  || rm pnetcdf.3
>>>>gcc -c -O -I.   -DNDEBUG validator.c
>>>>gcc -o ncvalid -O  validator.o  header.o  mpincio.o  attr.o  dim.o  nc.o  ncx.o
>>>> string.o  var.o
>>>>MPI_Comm_rank
>>>>MPI_File_set_view
>>>>MPI_Error_string
>>>>MPI_File_read_at
>>>>MPI_Finalize
>>>>MPI_Bcast
>>>>MPI_File_delete
>>>>MPI_File_open
>>>>MPI_File_sync
>>>>MPI_Barrier
>>>>MPI_File_close
>>>>MPI_Comm_size
>>>>MPI_Allreduce
>>>>MPI_File_write_at
>>>>collect2: ld returned 1 exit status
>>>>*** Exit 1
>>>>Stop.
>>>>*** Exit 1
>>>>Stop.
>>>>*** Exit 1
>>>>Stop.
>>>>*** Exit 1
>>>>Stop.
>>>>
>>>>--
>>>>      +----------------------------------------------------------------------+
>>>>      |                                          John R. Tannahill           |
>>>>      |    _/      _/      _/    _/  _/          Lawrence Livermore Nat. Lab |
>>>>      |   _/      _/      _/_/  _/  _/           P.O. Box 808, M/S L-103     |
>>>>      |  _/      _/      _/  _/_/  _/            Livermore, CA  94551        |
>>>>      | _/_/_/  _/_/_/  _/    _/  _/_/_/         Phone:  925-423-3514        |
>>>>      |                                          Fax:    925-423-4908        |
>>>>      | Lawrence Livermore National Laboratory   Email:  jrt at llnl.gov        |
>>>>      +----------------------------------------------------------------------+
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>>
>>
>>--
>>       +----------------------------------------------------------------------+
>>       |                                          John R. Tannahill           |
>>       |    _/      _/      _/    _/  _/          Lawrence Livermore Nat. Lab |
>>       |   _/      _/      _/_/  _/  _/           P.O. Box 808, M/S L-103     |
>>       |  _/      _/      _/  _/_/  _/            Livermore, CA  94551        |
>>       | _/_/_/  _/_/_/  _/    _/  _/_/_/         Phone:  925-423-3514        |
>>       |                                          Fax:    925-423-4908        |
>>       | Lawrence Livermore National Laboratory   Email:  jrt at llnl.gov        |
>>       +----------------------------------------------------------------------+
>>
>>
> 
> 
> 

-- 
       +----------------------------------------------------------------------+
       |                                          John R. Tannahill           |
       |    _/      _/      _/    _/  _/          Lawrence Livermore Nat. Lab |
       |   _/      _/      _/_/  _/  _/           P.O. Box 808, M/S L-103     |
       |  _/      _/      _/  _/_/  _/            Livermore, CA  94551        |
       | _/_/_/  _/_/_/  _/    _/  _/_/_/         Phone:  925-423-3514        |
       |                                          Fax:    925-423-4908        |
       | Lawrence Livermore National Laboratory   Email:  jrt at llnl.gov        |
       +----------------------------------------------------------------------+