[Nek5000-users] ?==?utf-8?q? Run nek5000 in BlueGene supercalculator (IBM?==?utf-8?q? compiler)
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Fri Mar 24 03:00:21 CDT 2017
Hello,
Thank you very much for your answear, could you please share more detail about your changes?
1: What compilers did you chose?
2: I will do that
3: I read only standard file, I don't have to read fld (yet), the fileds is initialized with an analytical form, and it fail just after the setup phrase, it show NaN in one columm of Hemholtz step.
But I will have to read on fld file, what alternative methode did you use?
Thank you again,
Best,
Le Vendredi 24 Mars 2017 08:25 CET, nek5000-users at lists.mcs.anl.gov a écrit:
> Hello,
>
> I recently moved my computations to the blue-gene server of
> IDRIS. I had to make the following modifications to make the code
> run on this server:
>
> 1. Change the compiler settings. A page containing the details
> of the various compilers are given on IDRIS website.
>
> 2. There were some issues with the sub-block submission. Sometimes the
> the computations hung displaying "permission denied". So I was advised
> to use compute blocks in multiple of 64.
>
> 3. Can you check which step of your code gives NaN? Is it because of
> an error in reading any file? In my simulations, apparently, "load_fld'
> subroutine was causing a problem so I used an alternate method to read
> the files.
>
> Hope these help.
>
> N.
>
> On Thursday 23 March 2017 08:32 PM, nek5000-users at lists.mcs.anl.gov wrote:
> > Hi,
> >
> > I have trouble running Nek in BlueGene in IDRIS, French national supercalculator: the compilation show no error, but the output give NaN before the time loop start. I looked in the internet and I found 1 person ask almost the same question 4 years ago (In my case the compilation was fine), but I can't find the answear.
> >
> > Are there anyone ran Nek5000 in IDRIS can share their experience?
> >
> > Thank you guy,
> >
> >
> >
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