[Nek5000-users] grid2grid interpolation
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Thu Jun 9 06:33:08 CDT 2016
Hello Neks,
I am trying to refine my current mesh using Prenek and interpolating
my current data from the current grid to the refined one.
I kept following the instructions for the function g2gi() and was able
to run makenek successful. But using nek or nekmpi keeps giving me
following error messages.
For nek:
/----------------------------------------------------------\\
| _ __ ______ __ __ ______ ____ ____ ____ |
| / | / // ____// //_/ / ____/ / __ \\ / __ \\ / __ \\ |
| / |/ // __/ / ,< /___ \\ / / / // / / // / / / |
| / /| // /___ / /| | ____/ / / /_/ // /_/ // /_/ / |
| /_/ |_//_____//_/ |_|/_____/ \\____/ \\____/ \\____/ |
| |
|----------------------------------------------------------|
| |
| NEK5000: Open Source Spectral Element Solver |
| COPYRIGHT (c) 2008-2010 UCHICAGO ARGONNE, LLC |
| Version: 1.0rc1 / SVN r1061 |
| Web: http://nek5000.mcs.anl.gov |
| |
\\----------------------------------------------------------/
Number of processors: 1
REAL wdsize : 8
INTEGER wdsize : 4
[satyajit-All-Series:17818] *** An error occurred in MPI_Bcast
[satyajit-All-Series:17818] *** on communicator MPI COMMUNICATOR 3 DUP FROM 0
[satyajit-All-Series:17818] *** MPI_ERR_TYPE: invalid datatype
[satyajit-All-Series:17818] *** MPI_ERRORS_ARE_FATAL: your MPI job
will now abort
real 0m0.029s
user 0m0.005s
sys 0m0.010s
and for nekmpi:
/----------------------------------------------------------\\
| _ __ ______ __ __ ______ ____ ____ ____ |
| / | / // ____// //_/ / ____/ / __ \\ / __ \\ / __ \\ |
| / |/ // __/ / ,< /___ \\ / / / // / / // / / / |
| / /| // /___ / /| | ____/ / / /_/ // /_/ // /_/ / |
| /_/ |_//_____//_/ |_|/_____/ \\____/ \\____/ \\____/ |
| |
|----------------------------------------------------------|
| |
| NEK5000: Open Source Spectral Element Solver |
| COPYRIGHT (c) 2008-2010 UCHICAGO ARGONNE, LLC |
| Version: 1.0rc1 / SVN r1061 |
| Web: http://nek5000.mcs.anl.gov |
| |
\\----------------------------------------------------------/
Number of processors: 2
REAL wdsize : 8
INTEGER wdsize : 4
ERROR (proc 0000, /home/michaelr/nek5_svn/trunk/nek/jl/fcrystal.c:94):
comm_init_check: passed P=2, but not compiled with -DMPI
call exitt: dying ...
ERROR (proc 0000, /home/michaelr/nek5_svn/trunk/nek/jl/fcrystal.c:94):
comm_init_check: passed P=2, but not compiled with -DMPI
backtrace(): obtained 11 stack frames.
./nek5000() [0x4e6b0a]
./nek5000() [0x5a55e9]
./nek5000() [0x5dfe25]
./nek5000() [0x5dfeba]
./nek5000() [0x5e0053]
./nek5000() [0x5a7b96]
./nek5000() [0x5a8a28]
./nek5000() [0x402c5f]
./nek5000() [0x4022d4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7f95d20b3ec5]
./nek5000() [0x402319]
total elapsed time : 1.46547E+09 sec
total solver time incl. I/O : 0.00000E+00 sec
time/timestep : 0.00000E+00 sec
CPU seconds/timestep/gridpt : 0.00000E+00 sec
Any suggestions?
Br,
Michael
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