[Nek5000-users] Nek5000-users Digest, Vol 78, Issue 9
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Tue Sep 1 16:36:00 CDT 2015
Hi Allen,
It looks like you have an extra line after the file name in the restart section
of your .rea file ?
Paul
________________________________________
From: nek5000-users-bounces at lists.mcs.anl.gov [nek5000-users-bounces at lists.mcs.anl.gov] on behalf of nek5000-users at lists.mcs.anl.gov [nek5000-users at lists.mcs.anl.gov]
Sent: Saturday, August 29, 2015 2:51 AM
To: nek5000-users at lists.mcs.anl.gov
Subject: Re: [Nek5000-users] Nek5000-users Digest, Vol 78, Issue 9
Hi, Phillip
Thanks for your reply, but the dos2unix actually does not help. And I
tried a lot to fix it up, including copy existing command from other
examples .rea files to eliminate the error that might have something to
do with the "CR and LF" stuff (I know little about these line breaks).
I am in Ubuntu, should this this be due to the failue of reading
restart parameters?he
I have attached the .rea file. It would be greatly that you can have a
look and give some advice.
Thanks in advance.
and have a nice weekend!
from Allen
On 08/29/2015 01:00 AM, nek5000-users-request at lists.mcs.anl.gov wrote:
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> 1. restart a case got an error: Error reading initial
> condition/drive force data (nek5000-users at lists.mcs.anl.gov)
> 2. Re: restart a case got an error: Error reading initial
> condition/drive force data (nek5000-users at lists.mcs.anl.gov)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 28 Aug 2015 11:22:34 +0800
> From: nek5000-users at lists.mcs.anl.gov
> To: nek5000-users at lists.mcs.anl.gov
> Subject: [Nek5000-users] restart a case got an error: Error reading
> initial condition/drive force data
> Message-ID:
> <mailman.6382.1440732161.24727.nek5000-users at lists.mcs.anl.gov>
> Content-Type: text/plain; charset="utf-8"; Format="flowed"
>
> Hi, Nekers:
>
> I recently want to do some simulation with Nek, so I followed the
> tutorial for the eddy_uv case
>
> I have run the case without problem, but when I want to try the restart
> utility with the following modification instructed by the manual
> -----------------------------------------------------------------------------
> 1 PRESOLVE/RESTART OPTIONS *****
> eddy_uv0.f00010
> -----------------------------------------------------------------------------
>
> affter changing for a new case name and recompile, I started the restart
> run, but the logfile gives the following error :
> -----------------------------------------------------------------------------
> mapping elements to processors
> 2 86 86 256 256 NELV
> 0 85 85 256 256 NELV
> 1 85 85 256 256 NELV
> RANK 0 IEG 133 134 135 136 149 150 151 152
> 161 162 165 166 167 168 177 178
> 179 181 182 183 184 193 194 195
> 196 197 198 199 200 201 202 203
> 204 205 206 207 208 209 210 211
> 212 213 214 215 216 217 218 219
> 220 221 222 223 224 225 226 227
> 228 229 230 231 232 233 234 235
> 236 237 238 239 240 241 242 243
> 244 245 246 247 248 249 250 251
> 252 253 254 255 256
> element load imbalance: 1 85 86
> done :: mapping elements to processors
>
> Error reading initial condition/drive force data
> aborting in routine rdicdf.
> EXIT: rdicdf error 1
>
> call exitt: dying ...
>
> backtrace(): obtained 9 stack frames.
> ./nek5000(print_stack_+0x18) [0x500ff8]
> ./nek5000(exitt_+0x1cc) [0x5be5ec]
> ./nek5000(exitti_+0x117) [0x5c1537]
> ./nek5000(rdicdf_+0x1e7) [0x442387]
> ./nek5000(readat_+0x35f) [0x44951f]
> ./nek5000(nek_init_+0x75) [0x41ae25]
> ./nek5000(main+0x24) [0x419d84]
> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f26a5be276d]
> ./nek5000() [0x419dc9]
> --------------------------------------------------------------------------------------------------------------------
>
> I have searched the post list, but I only found very vague statement of
> this
> problem:_http://lists.mcs.anl.gov/pipermail/nek5000-users/2011-October/001560.html_
>
> Hope some one can give me some hint, I actually do exactly what the
> manual does, which makes me confused.
>
> Thanks, hope it is a minor mistake.
>
> from Allen
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> ------------------------------
>
> Message: 2
> Date: Fri, 28 Aug 2015 10:43:10 +0200
> From: nek5000-users at lists.mcs.anl.gov
> To: nek5000-users at lists.mcs.anl.gov
> Subject: Re: [Nek5000-users] restart a case got an error: Error
> reading initial condition/drive force data
> Message-ID:
> <mailman.6397.1440751408.24727.nek5000-users at lists.mcs.anl.gov>
> Content-Type: text/plain; charset=windows-1252; format=flowed
>
> not sure it helps, but we had a similar problem recently when a rea file
> went trough Windows and Linux, adding CR and LF as line breaks. As far
> as I remember, using dos2unix of the file helped. Also, a tab character
> (ASCII 9) somewhere on that line gave some problems.
>
> Good luck, Philipp
>
> On 2015-08-28 05:22, nek5000-users at lists.mcs.anl.gov wrote:
>> Hi, Nekers:
>>
>> I recently want to do some simulation with Nek, so I followed the
>> tutorial for the eddy_uv case
>>
>> I have run the case without problem, but when I want to try the restart
>> utility with the following modification instructed by the manual
>> -----------------------------------------------------------------------------
>> 1 PRESOLVE/RESTART OPTIONS *****
>> eddy_uv0.f00010
>> -----------------------------------------------------------------------------
>>
>> affter changing for a new case name and recompile, I started the restart
>> run, but the logfile gives the following error :
>> -----------------------------------------------------------------------------
>> mapping elements to processors
>> 2 86 86 256 256 NELV
>> 0 85 85 256 256 NELV
>> 1 85 85 256 256 NELV
>> RANK 0 IEG 133 134 135 136 149 150 151 152
>> 161 162 165 166 167 168 177 178
>> 179 181 182 183 184 193 194 195
>> 196 197 198 199 200 201 202 203
>> 204 205 206 207 208 209 210 211
>> 212 213 214 215 216 217 218 219
>> 220 221 222 223 224 225 226 227
>> 228 229 230 231 232 233 234 235
>> 236 237 238 239 240 241 242 243
>> 244 245 246 247 248 249 250 251
>> 252 253 254 255 256
>> element load imbalance: 1 85 86
>> done :: mapping elements to processors
>>
>> Error reading initial condition/drive force data
>> aborting in routine rdicdf.
>> EXIT: rdicdf error 1
>>
>> call exitt: dying ...
>>
>> backtrace(): obtained 9 stack frames.
>> ./nek5000(print_stack_+0x18) [0x500ff8]
>> ./nek5000(exitt_+0x1cc) [0x5be5ec]
>> ./nek5000(exitti_+0x117) [0x5c1537]
>> ./nek5000(rdicdf_+0x1e7) [0x442387]
>> ./nek5000(readat_+0x35f) [0x44951f]
>> ./nek5000(nek_init_+0x75) [0x41ae25]
>> ./nek5000(main+0x24) [0x419d84]
>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f26a5be276d]
>> ./nek5000() [0x419dc9]
>> --------------------------------------------------------------------------------------------------------------------
>>
>> I have searched the post list, but I only found very vague statement of
>> this
>> problem:_http://lists.mcs.anl.gov/pipermail/nek5000-users/2011-October/001560.html_
>>
>> Hope some one can give me some hint, I actually do exactly what the
>> manual does, which makes me confused.
>>
>> Thanks, hope it is a minor mistake.
>>
>> from Allen
>>
>>
>> _______________________________________________
>> Nek5000-users mailing list
>> Nek5000-users at lists.mcs.anl.gov
>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>
>
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