[Nek5000-users] Submitting Job Nek Enabled Moab

[nek5000-users at lists.mcs.anl.gov]

Hi Vijay,


Firstly thank you for your response!


I have attempted all you suggested and this still does not seem to fix my issues.


When I run ldd nek5000 I see:


linux-vdso.so.1 =>  (0x00007fff635ff000)
        libz.so.1 => /home/eng/esumgy/pre-moab/zlib/zlib-1.2.8/libz.so.1 (0x00007fdd5a627000)
        libm.so.6 => /lib64/libm.so.6 (0x00007fdd5a37a000)
        libsz.so.2 => /home/eng/esumgy/pre-moab/szip/szip-2.1/gcc/lib/libsz.so.2 (0x00007fdd5a166000)
        libgpfs.so => /usr/lib64/libgpfs.so (0x00007fdd5a05a000)
        libdl.so.2 => /lib64/libdl.so.2 (0x00007fdd59e55000)
        libmpi_f77.so.0 => /hpcwarwick/ompi/1.4.5/intel/11.1/lib/libmpi_f77.so.0 (0x00007fdd59c19000)
        libmpi.so.0 => /hpcwarwick/ompi/1.4.5/intel/11.1/lib/libmpi.so.0 (0x00007fdd59945000)
        libopen-rte.so.0 => /hpcwarwick/ompi/1.4.5/intel/11.1/lib/libopen-rte.so.0 (0x00007fdd596dc000)
        libopen-pal.so.0 => /hpcwarwick/ompi/1.4.5/intel/11.1/lib/libopen-pal.so.0 (0x00007fdd5945e000)
        libnsl.so.1 => /lib64/libnsl.so.1 (0x00007fdd59246000)
        libutil.so.1 => /lib64/libutil.so.1 (0x00007fdd59042000)
        libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00007fdd58d3c000)
        libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007fdd58b26000)
        libintlc.so.5 => /gpfs/hpcwarwick/intel/Compiler/11.1/059/lib/intel64/libintlc.so.5 (0x00007fdd589e8000)
        libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fdd587cb000)
        libc.so.6 => /lib64/libc.so.6 (0x00007fdd58452000)
        librt.so.1 => /lib64/librt.so.1 (0x00007fdd58248000)
        /lib64/ld-linux-x86-64.so.2 (0x00007fdd5a83f000)
        libimf.so => /gpfs/hpcwarwick/intel/Compiler/11.1/059/lib/intel64/libimf.so (0x00007fdd57eb5000)
        libsvml.so => /gpfs/hpcwarwick/intel/Compiler/11.1/059/lib/intel64/libsvml.so (0x00007fdd57c9d000)



The compiler being used is ompi/1.4.5/intel/11.1


See also the moab and hdf5 config.log attached!


System information can be found - http://www2.warwick.ac.uk/fac/sci/csc/local/hpc


Thank you for your help I am happy maybe to finally solve this issue


Friedrich
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