[Nek5000-users] Submitting Job Nek Enabled Moab

[nek5000-users at lists.mcs.anl.gov]

Friedrich,

Sorry about the late reply. I looked at the config logs and don't see
anything wrong with it. I can't see any architecture info since the
warwick site needs authentication.

It might be worthwhile if you can test with static builds in case the
shared ones are still failing. I am not entirely sure why you get
memory errors (in one of your previous threads).

Vijay

On Thu, Oct 30, 2014 at 7:44 AM,  <nek5000-users at lists.mcs.anl.gov> wrote:
> Hi Vijay,
>
>
> Firstly thank you for your response!
>
>
> I have attempted all you suggested and this still does not seem to fix my
> issues.
>
>
> When I run ldd nek5000 I see:
>
>
> linux-vdso.so.1 =>  (0x00007fff635ff000)
>         libz.so.1 => /home/eng/esumgy/pre-moab/zlib/zlib-1.2.8/libz.so.1
> (0x00007fdd5a627000)
>         libm.so.6 => /lib64/libm.so.6 (0x00007fdd5a37a000)
>         libsz.so.2 =>
> /home/eng/esumgy/pre-moab/szip/szip-2.1/gcc/lib/libsz.so.2
> (0x00007fdd5a166000)
>         libgpfs.so => /usr/lib64/libgpfs.so (0x00007fdd5a05a000)
>         libdl.so.2 => /lib64/libdl.so.2 (0x00007fdd59e55000)
>         libmpi_f77.so.0 =>
> /hpcwarwick/ompi/1.4.5/intel/11.1/lib/libmpi_f77.so.0 (0x00007fdd59c19000)
>         libmpi.so.0 => /hpcwarwick/ompi/1.4.5/intel/11.1/lib/libmpi.so.0
> (0x00007fdd59945000)
>         libopen-rte.so.0 =>
> /hpcwarwick/ompi/1.4.5/intel/11.1/lib/libopen-rte.so.0 (0x00007fdd596dc000)
>         libopen-pal.so.0 =>
> /hpcwarwick/ompi/1.4.5/intel/11.1/lib/libopen-pal.so.0 (0x00007fdd5945e000)
>         libnsl.so.1 => /lib64/libnsl.so.1 (0x00007fdd59246000)
>         libutil.so.1 => /lib64/libutil.so.1 (0x00007fdd59042000)
>         libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00007fdd58d3c000)
>         libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007fdd58b26000)
>         libintlc.so.5 =>
> /gpfs/hpcwarwick/intel/Compiler/11.1/059/lib/intel64/libintlc.so.5
> (0x00007fdd589e8000)
>         libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fdd587cb000)
>         libc.so.6 => /lib64/libc.so.6 (0x00007fdd58452000)
>         librt.so.1 => /lib64/librt.so.1 (0x00007fdd58248000)
>         /lib64/ld-linux-x86-64.so.2 (0x00007fdd5a83f000)
>         libimf.so =>
> /gpfs/hpcwarwick/intel/Compiler/11.1/059/lib/intel64/libimf.so
> (0x00007fdd57eb5000)
>         libsvml.so =>
> /gpfs/hpcwarwick/intel/Compiler/11.1/059/lib/intel64/libsvml.so
> (0x00007fdd57c9d000)
>
>
>
> The compiler being used is ompi/1.4.5/intel/11.1
>
>
> See also the moab and hdf5 config.log attached!
>
>
> System information can be found -
> http://www2.warwick.ac.uk/fac/sci/csc/local/hpc
>
>
> Thank you for your help I am happy maybe to finally solve this issue
>
>
> Friedrich
>
>
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