[Nek5000-users] Running MOAB example
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Wed Sep 11 12:30:38 CDT 2013
On 09/11/2013 12:10 PM, Iulian Grindeanu wrote:
>
>
> ------------------------------------------------------------------------------------------------------------------------
>
> Aha, good catch.
>
> Iulian, could you backport the imesh_freememory function? Thanks.
>
> Hello,
> The Version 4.6 was released on February 11. The link to the tar ball is in the web page.
> http://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB
>
> http://ftp.mcs.anl.gov/pub/fathom/moab-4.6.0.tar.gz
> (so this is the official release 4.6)
>
> The current Version4.6 branch, in the git repository, already has the free memory function backported.
> That tarball is updated nightly, and you can get it from this link (on the moab wiki page too)
>
> http://ftp.mcs.anl.gov/pub/fathom/moab-4.6-nightly.tar.gz
>
> Is this what they need?
>
Ok, yes, that's what they need, thanks.
- tim
> Thanks,
> Iulian
>
> - tim
>
> On 09/11/2013 11:33 AM, Vijay S. Mahadevan wrote:
> > The linker error is because of your version mismatch. You need to
> > update your moab to the latest version. I see you are using v4.6 now.
> > You should be able to use the dev version from
> > https://bitbucket.org/fathomteam/moab with git or download the newer
> > patch from https://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB.
> >
> > Tim, can we create a new patched version of the release for download.
> > I spoke to Rajeev about this some time back but we need to decide what
> > fixes to backport.
> >
> > Vijay
> >
> > On Wed, Sep 11, 2013 at 11:20 AM, <nek5000-users at lists.mcs.anl.gov> wrote:
> >>
> >> Yes , I am using gnu, and whwen I add USR_LFLAGS="-lmpi_cxx -lstdc++,
> >> I get this,
> >> makenek - automatic build tool for Nek5000
> >> generating makefile ...
> >> mpif77 -c -O2 -fdefault-real-8 -x f77-cpp-input -fcray-pointer -DMOAB
> >> -DPTRSIZE8 -DMPI -DLONGINT8 -DUNDERSCORE -DGLOBAL_LONG_LONG
> >> -I/home/amirreza/nek5_svn/amirreza_test/examples/moab
> >> -I/home/amirreza/nek5_svn/trunk/nek -I./
> >> /home/amirreza/nek5_svn/amirreza_test/examples/moab/pipe.f
> >> -I/home/amirreza/nek5_svn/trunk/nek/3rd_party
> >> -I/home/amirreza/Amirreza/moab-4.6.0/gcc/include -o obj/pipe.o
> >> mpif77 -o nek5000 obj/pipe.o obj/drive.o obj/drive1.o obj/drive2.o
> >> obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o
> >> obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o
> >> obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o
> >> obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o
> >> obj/turb.o obj/mvmesh.o obj/ic.o obj/ssolv.o obj/planx.o obj/math.o
> >> obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o
> >> obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o obj/hsmg.o
> >> obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o obj/navier6.o
> >> obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o obj/calcz.o obj/byte.o
> >> obj/chelpers.o obj/byte_mpi.o obj/postpro.o obj/cvode_driver.o
> >> obj/nek_comm.o obj/init_plugin.o obj/setprop.o obj/qthermal.o
> >> obj/cvode_aux.o obj/makeq_aux.o obj/papi.o obj/ssygv.o obj/dsygv.o
> >> obj/nek_in_situ.o obj/mxm_std.o obj/blas.o obj/moab.o obj/imeshutil.o
> >> obj/imeshcutil.o obj/comm_mpi.o obj/singlmesh.o obj/jl_gs.o obj/jl_sort.o
> >> obj/jl_sarray_transfer.o obj/jl_sarray_sort.o obj/jl_gs_local.o
> >> obj/jl_crystal.o obj/jl_comm.o obj/jl_tensor.o obj/jl_fail.o
> >> obj/jl_fcrystal.o obj/jl_findpts.o obj/jl_findpts_local.o obj/jl_obbox.o
> >> obj/jl_poly.o obj/jl_lob_bnd.o obj/jl_findpts_el_3.o obj/jl_findpts_el_2.o
> >> obj/jl_sparse_cholesky.o obj/jl_xxt.o obj/jl_fcrs.o
> >> -L/home/amirreza/Amirreza/netcdf-4.1.3/gcc/lib
> >> -L/home/amirreza/Amirreza/zlib-1.2.5/gcc/lib
> >> -L/home/amirreza/Amirreza/szip-2.1/gcc/lib
> >> -L/home/amirreza/Amirreza/hdf5-1.8.11/lib
> >> -L/home/amirreza/Amirreza/moab-4.6.0/gcc/lib
> >> -L/home/amirreza/Amirreza/moab-4.6.0/gcc/lib -liMesh -lMOAB -lnetcdf -lhdf5
> >> -lsz -lm -lmpi_cxx -lstdc++
> >> obj/moab.o: In function `nekmoab_intbc_':
> >> moab.f:(.text+0xe9d): undefined reference to `imesh_freememory_'
> >> moab.f:(.text+0xece): undefined reference to `imesh_freememory_'
> >> moab.f:(.text+0xee4): undefined reference to `imesh_freememory_'
> >> moab.f:(.text+0xf05): undefined reference to `imesh_freememory_'
> >> obj/moab.o: In function `nekmoab_bc_':
> >> moab.f:(.text+0x1306): undefined reference to `imesh_freememory_'
> >>
> >> collect2: ld returned 1 exit status
> >> make: *** [nek5000] Error 1
> >>
> >> Thanks,
> >> Ami
> >>
> >>
> >> On Wed, Sep 11, 2013 at 12:05 PM, <nek5000-users at lists.mcs.anl.gov> wrote:
> >>>
> >>> It depends which compiler you're using. Are you using gnu?
> >>>
> >>> Please send complete compile output.
> >>>
> >>> - tim
> >>>
> >>>
> >>> On 09/11/2013 10:11 AM, nek5000-users at lists.mcs.anl.gov wrote:
> >>>>
> >>>> Thanks for your answer, to make sure I have added libraries to makenek
> >>>> ''USR_LFLAGS="-lmpi_cxx -lstdc++" which I'm
> >>>> getting same error,so you mean I need to add appropriate fortran library
> >>>> to USR_LFLAGS?
> >>>>
> >>>> Thanks,
> >>>> Ami
> >>>>
> >>>>
> >>>> On Wed, Sep 11, 2013 at 10:47 AM, <nek5000-users at lists.mcs.anl.gov
> >>>> <mailto:nek5000-users at lists.mcs.anl.gov>> wrote:
> >>>>
> >>>> Hi Ami,
> >>>> That's the C++ runtime. You have two options:
> >>>> 1. Link with the C++ compiler; in this case, you'll have to
> >>>> explicitly add the fortran runtime libraries to the link
> >>>> statement, which is most easily done by adding it to USR_LFLAGS in
> >>>> makenek. Compiler documents often tell you which
> >>>> libraries implement the fortran runtime, usually in a section about
> >>>> inter-language linking.
> >>>>
> >>>> 2. Add the C++ std libs to USR_LFLAGS. The trunk/nek/makenek file
> >>>> has a few examples of this method for
> >>>> gnu/intel/pgi. Sometimes, like on BG/x, it can be difficult to
> >>>> figure out what all comprises the C++ runtime, which
> >>>> is why I list 1. above.
> >>>>
> >>>> - tim
> >>>>
> >>>>
> >>>> On 09/11/2013 09:31 AM, nek5000-users at lists.mcs.anl.__gov
> >>>> <mailto:nek5000-users at lists.mcs.anl.gov> wrote:
> >>>>
> >>>> Hello Neks,
> >>>>
> >>>> I am trying to run MOAB example with nek5000, but all the time
> >>>> which I am running, it gives me set of undefined
> >>>> reference error. I put an error with last part of my ./makenek
> >>>> pipe log below.
> >>>> What is wrong with my work?
> >>>>
> >>>> IODebugTrack.cpp:(.text+0xb74)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>>
> >>>> std::operator<< <std::char_traits<char>
> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
> >>>> IODebugTrack.cpp:(.text+0xb7f)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(unsigned long)'
> >>>> IODebugTrack.cpp:(.text+0xb8c)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>>
> >>>> std::operator<< <std::char_traits<char>
> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
> >>>> IODebugTrack.cpp:(.text+0xb97)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(unsigned long)'
> >>>> IODebugTrack.cpp:(.text+0xbd3)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>>
> >>>> std::operator<< <std::char_traits<char>
> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
> >>>> IODebugTrack.cpp:(.text+0xbde)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(unsigned long)'
> >>>> IODebugTrack.cpp:(.text+0xbeb)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>>
> >>>> std::operator<< <std::char_traits<char>
> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
> >>>> IODebugTrack.cpp:(.text+0xbf6)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(unsigned long)'
> >>>> IODebugTrack.cpp:(.text+0xc03)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>>
> >>>> std::operator<< <std::char_traits<char>
> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
> >>>> IODebugTrack.cpp:(.text+0xc0e)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(unsigned long)'
> >>>> IODebugTrack.cpp:(.text+0xc1b)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>>
> >>>> std::operator<< <std::char_traits<char>
> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
> >>>> IODebugTrack.cpp:(.text+0xc26)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(unsigned long)'
> >>>> IODebugTrack.cpp:(.text+0xc33)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>>
> >>>> std::operator<< <std::char_traits<char>
> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
> >>>> IODebugTrack.cpp:(.text+0xc38)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>>
> >>>> std::endl<char, std::char_traits<char> >(std::basic_ostream<char,
> >>>> std::char_traits<char> >&)'
> >>>> IODebugTrack.cpp:(.text+0xc40)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(std::basic___ostream<char, std::char_traits<char>
> >>>>> & (*)(std::basic_ostream<char,
> >>>> std::char_traits<char> >&))'
> >>>> IODebugTrack.cpp:(.text+0xc50)__: undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::flush()'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
> >>>> function
> >>>> `moab::IODebugTrack::all___reduce()':
> >>>> IODebugTrack.cpp:(.text+0xd08)__: undefined reference to
> >>>> `MPI_Comm_size'
> >>>> IODebugTrack.cpp:(.text+0xdfe)__: undefined reference to
> >>>> `MPI_Gather'
> >>>> IODebugTrack.cpp:(.text+__0x1080): undefined reference to
> >>>> `MPI_Gatherv'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
> >>>> function
> >>>> `__static_initialization_and___destruction_0(int, int)':
> >>>> IODebugTrack.cpp:(.text+__0x1221): undefined reference to
> >>>> `std::ios_base::Init::Init()'
> >>>> IODebugTrack.cpp:(.text+__0x1226): undefined reference to
> >>>> `std::ios_base::Init::~Init()'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
> >>>> function
> >>>> `std::list<moab::IODebugTrack:__:DRange,
> >>>> std::allocator<moab::__IODebugTrack::DRange>
> >>>>> ::_M_insert(std::_List___iterator<moab::IODebugTrack::__DRange>,
> >>>> moab::IODebugTrack::DRange const&)':
> >>>>
> >>>>
> IODebugTrack.cpp:(.text.___ZNSt4listIN4moab12IODebugTrack__6DRangeESaIS2_EE9_M___insertESt14_List_iteratorIS2___ERKS2_[std::list<moab::__IODebugTrack::DRange,
> >>>> std::allocator<moab::__IODebugTrack::DRange>
> >>>>> ::_M_insert(std::_List___iterator<moab::IODebugTrack::__DRange>,
> >>>>
> >>>> moab::IODebugTrack::DRange const&)]+0x3a): undefined reference to
> >>>>
> >>>> `std::__detail::_List_node___base::_M_hook(std::__detail::___List_node_base*)'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
> >>>> function
> >>>>
> >>>> `__gnu_cxx::new_allocator<std:__:_List_node<moab::__IODebugTrack::DRange>
> >>>> >::deallocate(std::_List_node<__moab::IODebugTrack::DRange>*,
> >>>> unsigned long)':
> >>>>
> >>>>
> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE10deallocateEPS5_m[__gnu___cxx::new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
> >>>> >::deallocate(std::_List_node<__moab::IODebugTrack::DRange>*,
> >>>> unsigned long)]+0x1c): undefined reference to
> >>>> `operator
> >>>> delete(void*)'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
> >>>> function
> >>>>
> >>>> `__gnu_cxx::new_allocator<__moab::IODebugTrack::DRange>::__allocate(unsigned
> >>>> long, void const*)':
> >>>>
> >>>>
> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE8allocateEmPKv[__gnu___cxx::new_allocator<moab::__IODebugTrack::DRange>::__allocate(unsigned
> >>>>
> >>>> long, void const*)]+0x2c): undefined reference to
> >>>> `std::__throw_bad_alloc()'
> >>>>
> >>>>
> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE8allocateEmPKv[__gnu___cxx::new_allocator<moab::__IODebugTrack::DRange>::__allocate(unsigned
> >>>>
> >>>> long, void const*)]+0x45): undefined reference to `operator
> >>>> new(unsigned long)'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
> >>>> function
> >>>>
> >>>> `__gnu_cxx::new_allocator<__moab::IODebugTrack::DRange>::__deallocate(moab::IODebugTrack:__:DRange*,
> >>>> unsigned
> >>>> long)':
> >>>>
> >>>>
> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE10deallocateEPS3_m[____gnu_cxx::new_allocator<moab::__IODebugTrack::DRange>::__deallocate(moab::IODebugTrack:__:DRange*,
> >>>>
> >>>> unsigned long)]+0x1c): undefined reference to `operator
> >>>> delete(void*)'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
> >>>> function
> >>>>
> >>>> `__gnu_cxx::new_allocator<std:__:_List_node<moab::__IODebugTrack::DRange>
> >>>>> ::allocate(unsigned long, void const*)':
> >>>>
> >>>>
> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE8allocateEmPKv[__gnu_cxx:__:new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
> >>>>
> >>>> >::allocate(unsigned long, void const*)]+0x2c): undefined
> >>>> reference to `std::__throw_bad_alloc()'
> >>>>
> >>>>
> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE8allocateEmPKv[__gnu_cxx:__:new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
> >>>>
> >>>> >::allocate(unsigned long, void const*)]+0x46): undefined
> >>>> reference to `operator new(unsigned long)'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):(.eh_frame+__0x24b):
> >>>> undefined reference to
> >>>> `__gxx_personality_v0'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
> >>>> function
> >>>> `moab::operator<<(std::basic___ostream<char,
> >>>> std::char_traits<char> >&, moab::OrientedBox const&)':
> >>>>
> >>>> OrientedBox.cpp:(.text+0x97): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>> std::operator<<
> >>>> <std::char_traits<char> >(std::basic_ostream<char,
> >>>> std::char_traits<char> >&, char const*)'
> >>>> OrientedBox.cpp:(.text+0xaf): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>> std::operator<<
> >>>> <std::char_traits<char> >(std::basic_ostream<char,
> >>>> std::char_traits<char> >&, char const*)'
> >>>> OrientedBox.cpp:(.text+0xbc): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(double)'
> >>>> OrientedBox.cpp:(.text+0xc9): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>> std::operator<<
> >>>> <std::char_traits<char> >(std::basic_ostream<char,
> >>>> std::char_traits<char> >&, char const*)'
> >>>> OrientedBox.cpp:(.text+0xe1): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>> std::operator<<
> >>>> <std::char_traits<char> >(std::basic_ostream<char,
> >>>> std::char_traits<char> >&, char const*)'
> >>>> OrientedBox.cpp:(.text+0xee): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(double)'
> >>>> OrientedBox.cpp:(.text+0xfb): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>> std::operator<<
> >>>> <std::char_traits<char> >(std::basic_ostream<char,
> >>>> std::char_traits<char> >&, char const*)'
> >>>> OrientedBox.cpp:(.text+0x113): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char> >&
> >>>> std::operator<< <std::char_traits<char>
> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
> >>>> OrientedBox.cpp:(.text+0x120): undefined reference to
> >>>> `std::basic_ostream<char, std::char_traits<char>
> >>>> >::operator<<(double)'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
> >>>> function
> >>>> `__static_initialization_and___destruction_0(int, int)':
> >>>> OrientedBox.cpp:(.text+0x3aaf)__: undefined reference to
> >>>> `std::ios_base::Init::Init()'
> >>>> OrientedBox.cpp:(.text+0x3ab4)__: undefined reference to
> >>>> `std::ios_base::Init::~Init()'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
> >>>> function `moab::ErrorCode
> >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
> >>>> const&, double*, moab::CartVect*)':
> >>>>
> >>>>
> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
> >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
> >>>> const&, double*, moab::CartVect*)]+0xb7f):
> >>>>
> >>>> undefined
> >>>> reference to `std::cerr'
> >>>>
> >>>>
> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
> >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
> >>>> const&, double*, moab::CartVect*)]+0xb84):
> >>>>
> >>>> undefined
> >>>> reference to `std::basic_ostream<char, std::char_traits<char> >&
> >>>> std::operator<< <std::char_traits<char>
> >>>> >(std::basic_ostream<char, std::char_traits<char> >&, char
> >>>> const*)'
> >>>>
> >>>>
> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
> >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
> >>>> const&, double*, moab::CartVect*)]+0xb89):
> >>>>
> >>>> undefined
> >>>> reference to `std::basic_ostream<char, std::char_traits<char> >&
> >>>> std::endl<char, std::char_traits<char>
> >>>> >(std::basic_ostream<char, std::char_traits<char> >&)'
> >>>>
> >>>>
> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
> >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
> >>>> const&, double*, moab::CartVect*)]+0xb91):
> >>>> undefined
> >>>> reference to `std::basic_ostream<char, std::char_traits<char>
> >>>>> ::operator<<(std::basic___ostream<char,
> >>>>
> >>>> std::char_traits<char> >& (*)(std::basic_ostream<char,
> >>>> std::char_traits<char> >&))'
> >>>>
> >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o):(.eh_frame+__0x22f):
> >>>> undefined reference to
> >>>>
> >>>> `__gxx_personality_v0'
> >>>> collect2: ld returned 1 exit status
> >>>> make: *** [nek5000] Error 1
> >>>>
> >>>> Thanks,
> >>>> Ami
> >>>>
> >>>>
> >>>> _________________________________________________
> >>>> Nek5000-users mailing list
> >>>> Nek5000-users at lists.mcs.anl.__gov
> >>>> <mailto:Nek5000-users at lists.mcs.anl.gov>
> >>>> https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users
> >>>> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
> >>>>
> >>>>
> >>>> --
> >>>> ==============================__==============================__====
> >>>>
> >>>> "You will keep in perfect peace him whose mind is
> >>>> steadfast, because he trusts in you." Isaiah 26:3
> >>>>
> >>>> Tim Tautges Argonne National Laboratory
> >>>> (tautges at mcs.anl.gov <mailto:tautges at mcs.anl.gov>)
> >>>> (telecommuting from UW-Madison)
> >>>> phone (gvoice): (608) 354-1459 <tel:%28608%29%20354-1459> 1500
> >>>> Engineering Dr.
> >>>> fax: (608) 263-4499 <tel:%28608%29%20263-4499>
> >>>> Madison, WI 53706
> >>>>
> >>>> _________________________________________________
> >>>> Nek5000-users mailing list
> >>>> Nek5000-users at lists.mcs.anl.__gov
> >>>> <mailto:Nek5000-users at lists.mcs.anl.gov>
> >>>> https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users
> >>>> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> _______________________________________________
> >>>> Nek5000-users mailing list
> >>>> Nek5000-users at lists.mcs.anl.gov
> >>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
> >>>>
> >>>
> >>> --
> >>> ================================================================
> >>> "You will keep in perfect peace him whose mind is
> >>> steadfast, because he trusts in you." Isaiah 26:3
> >>>
> >>> Tim Tautges Argonne National Laboratory
> >>> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
> >>> phone (gvoice): (608) 354-1459 1500 Engineering Dr.
> >>> fax: (608) 263-4499 Madison, WI 53706
> >>>
> >>> _______________________________________________
> >>> Nek5000-users mailing list
> >>> Nek5000-users at lists.mcs.anl.gov
> >>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
> >>
> >>
> >>
> >> _______________________________________________
> >> Nek5000-users mailing list
> >> Nek5000-users at lists.mcs.anl.gov
> >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
> >>
> >
>
> --
> ================================================================
> "You will keep in perfect peace him whose mind is
> steadfast, because he trusts in you." Isaiah 26:3
>
> Tim Tautges Argonne National Laboratory
> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
> phone (gvoice): (608) 354-1459 1500 Engineering Dr.
> fax: (608) 263-4499 Madison, WI 53706
>
>
--
================================================================
"You will keep in perfect peace him whose mind is
steadfast, because he trusts in you." Isaiah 26:3
Tim Tautges Argonne National Laboratory
(tautges at mcs.anl.gov) (telecommuting from UW-Madison)
phone (gvoice): (608) 354-1459 1500 Engineering Dr.
fax: (608) 263-4499 Madison, WI 53706
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