[Nek5000-users] Running MOAB example

Wed Sep 11 12:10:28 CDT 2013

----- Original Message -----

| Aha, good catch.

| Iulian, could you backport the imesh_freememory function? Thanks.

Hello, 
The Version 4.6 was released on February 11. The link to the tar ball is in the web page. 
http://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB 

http://ftp.mcs.anl.gov/pub/fathom/moab-4.6.0.tar.gz 
(so this is the official release 4.6) 

The current Version4.6 branch, in the git repository, already has the free memory function backported. 
That tarball is updated nightly, and you can get it from this link (on the moab wiki page too) 

http://ftp.mcs.anl.gov/pub/fathom/moab-4.6-nightly.tar.gz 

Is this what they need ? 

Thanks, 
Iulian 

| - tim

| On 09/11/2013 11:33 AM, Vijay S. Mahadevan wrote:
| > The linker error is because of your version mismatch. You need to
| > update your moab to the latest version. I see you are using v4.6
| > now.
| > You should be able to use the dev version from
| > https://bitbucket.org/fathomteam/moab with git or download the
| > newer
| > patch from https://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB.
| >
| > Tim, can we create a new patched version of the release for
| > download.
| > I spoke to Rajeev about this some time back but we need to decide
| > what
| > fixes to backport.
| >
| > Vijay
| >
| > On Wed, Sep 11, 2013 at 11:20 AM, <nek5000-users at lists.mcs.anl.gov>
| > wrote:
| >>
| >> Yes , I am using gnu, and whwen I add USR_LFLAGS="-lmpi_cxx
| >> -lstdc++,
| >> I get this,
| >> makenek - automatic build tool for Nek5000
| >> generating makefile ...
| >> mpif77 -c -O2 -fdefault-real-8 -x f77-cpp-input -fcray-pointer
| >> -DMOAB
| >> -DPTRSIZE8 -DMPI -DLONGINT8 -DUNDERSCORE -DGLOBAL_LONG_LONG
| >> -I/home/amirreza/nek5_svn/amirreza_test/examples/moab
| >> -I/home/amirreza/nek5_svn/trunk/nek -I./
| >> /home/amirreza/nek5_svn/amirreza_test/examples/moab/pipe.f
| >> -I/home/amirreza/nek5_svn/trunk/nek/3rd_party
| >> -I/home/amirreza/Amirreza/moab-4.6.0/gcc/include -o obj/pipe.o
| >> mpif77 -o nek5000 obj/pipe.o obj/drive.o obj/drive1.o obj/drive2.o
| >> obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o
| >> obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o
| >> obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o
| >> obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o
| >> obj/turb.o obj/mvmesh.o obj/ic.o obj/ssolv.o obj/planx.o
| >> obj/math.o
| >> obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o
| >> obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o
| >> obj/hsmg.o
| >> obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o
| >> obj/navier6.o
| >> obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o obj/calcz.o
| >> obj/byte.o
| >> obj/chelpers.o obj/byte_mpi.o obj/postpro.o obj/cvode_driver.o
| >> obj/nek_comm.o obj/init_plugin.o obj/setprop.o obj/qthermal.o
| >> obj/cvode_aux.o obj/makeq_aux.o obj/papi.o obj/ssygv.o obj/dsygv.o
| >> obj/nek_in_situ.o obj/mxm_std.o obj/blas.o obj/moab.o
| >> obj/imeshutil.o
| >> obj/imeshcutil.o obj/comm_mpi.o obj/singlmesh.o obj/jl_gs.o
| >> obj/jl_sort.o
| >> obj/jl_sarray_transfer.o obj/jl_sarray_sort.o obj/jl_gs_local.o
| >> obj/jl_crystal.o obj/jl_comm.o obj/jl_tensor.o obj/jl_fail.o
| >> obj/jl_fcrystal.o obj/jl_findpts.o obj/jl_findpts_local.o
| >> obj/jl_obbox.o
| >> obj/jl_poly.o obj/jl_lob_bnd.o obj/jl_findpts_el_3.o
| >> obj/jl_findpts_el_2.o
| >> obj/jl_sparse_cholesky.o obj/jl_xxt.o obj/jl_fcrs.o
| >> -L/home/amirreza/Amirreza/netcdf-4.1.3/gcc/lib
| >> -L/home/amirreza/Amirreza/zlib-1.2.5/gcc/lib
| >> -L/home/amirreza/Amirreza/szip-2.1/gcc/lib
| >> -L/home/amirreza/Amirreza/hdf5-1.8.11/lib
| >> -L/home/amirreza/Amirreza/moab-4.6.0/gcc/lib
| >> -L/home/amirreza/Amirreza/moab-4.6.0/gcc/lib -liMesh -lMOAB
| >> -lnetcdf -lhdf5
| >> -lsz -lm -lmpi_cxx -lstdc++
| >> obj/moab.o: In function `nekmoab_intbc_':
| >> moab.f:(.text+0xe9d): undefined reference to `imesh_freememory_'
| >> moab.f:(.text+0xece): undefined reference to `imesh_freememory_'
| >> moab.f:(.text+0xee4): undefined reference to `imesh_freememory_'
| >> moab.f:(.text+0xf05): undefined reference to `imesh_freememory_'
| >> obj/moab.o: In function `nekmoab_bc_':
| >> moab.f:(.text+0x1306): undefined reference to `imesh_freememory_'
| >>
| >> collect2: ld returned 1 exit status
| >> make: *** [nek5000] Error 1
| >>
| >> Thanks,
| >> Ami
| >>
| >>
| >> On Wed, Sep 11, 2013 at 12:05 PM,
| >> <nek5000-users at lists.mcs.anl.gov> wrote:
| >>>
| >>> It depends which compiler you're using. Are you using gnu?
| >>>
| >>> Please send complete compile output.
| >>>
| >>> - tim
| >>>
| >>>
| >>> On 09/11/2013 10:11 AM, nek5000-users at lists.mcs.anl.gov wrote:
| >>>>
| >>>> Thanks for your answer, to make sure I have added libraries to
| >>>> makenek
| >>>> ''USR_LFLAGS="-lmpi_cxx -lstdc++" which I'm
| >>>> getting same error,so you mean I need to add appropriate fortran
| >>>> library
| >>>> to USR_LFLAGS?
| >>>>
| >>>> Thanks,
| >>>> Ami
| >>>>
| >>>>
| >>>> On Wed, Sep 11, 2013 at 10:47 AM,
| >>>> <nek5000-users at lists.mcs.anl.gov
| >>>> <mailto:nek5000-users at lists.mcs.anl.gov>> wrote:
| >>>>
| >>>> Hi Ami,
| >>>> That's the C++ runtime. You have two options:
| >>>> 1. Link with the C++ compiler; in this case, you'll have to
| >>>> explicitly add the fortran runtime libraries to the link
| >>>> statement, which is most easily done by adding it to USR_LFLAGS
| >>>> in
| >>>> makenek. Compiler documents often tell you which
| >>>> libraries implement the fortran runtime, usually in a section
| >>>> about
| >>>> inter-language linking.
| >>>>
| >>>> 2. Add the C++ std libs to USR_LFLAGS. The trunk/nek/makenek
| >>>> file
| >>>> has a few examples of this method for
| >>>> gnu/intel/pgi. Sometimes, like on BG/x, it can be difficult to
| >>>> figure out what all comprises the C++ runtime, which
| >>>> is why I list 1. above.
| >>>>
| >>>> - tim
| >>>>
| >>>>
| >>>> On 09/11/2013 09:31 AM, nek5000-users at lists.mcs.anl.__gov
| >>>> <mailto:nek5000-users at lists.mcs.anl.gov> wrote:
| >>>>
| >>>> Hello Neks,
| >>>>
| >>>> I am trying to run MOAB example with nek5000, but all the time
| >>>> which I am running, it gives me set of undefined
| >>>> reference error. I put an error with last part of my ./makenek
| >>>> pipe log below.
| >>>> What is wrong with my work?
| >>>>
| >>>> IODebugTrack.cpp:(.text+0xb74)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>>
| >>>> std::operator<< <std::char_traits<char>
| >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
| >>>>> const*)'
| >>>> IODebugTrack.cpp:(.text+0xb7f)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(unsigned long)'
| >>>> IODebugTrack.cpp:(.text+0xb8c)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>>
| >>>> std::operator<< <std::char_traits<char>
| >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
| >>>>> const*)'
| >>>> IODebugTrack.cpp:(.text+0xb97)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(unsigned long)'
| >>>> IODebugTrack.cpp:(.text+0xbd3)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>>
| >>>> std::operator<< <std::char_traits<char>
| >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
| >>>>> const*)'
| >>>> IODebugTrack.cpp:(.text+0xbde)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(unsigned long)'
| >>>> IODebugTrack.cpp:(.text+0xbeb)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>>
| >>>> std::operator<< <std::char_traits<char>
| >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
| >>>>> const*)'
| >>>> IODebugTrack.cpp:(.text+0xbf6)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(unsigned long)'
| >>>> IODebugTrack.cpp:(.text+0xc03)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>>
| >>>> std::operator<< <std::char_traits<char>
| >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
| >>>>> const*)'
| >>>> IODebugTrack.cpp:(.text+0xc0e)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(unsigned long)'
| >>>> IODebugTrack.cpp:(.text+0xc1b)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>>
| >>>> std::operator<< <std::char_traits<char>
| >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
| >>>>> const*)'
| >>>> IODebugTrack.cpp:(.text+0xc26)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(unsigned long)'
| >>>> IODebugTrack.cpp:(.text+0xc33)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>>
| >>>> std::operator<< <std::char_traits<char>
| >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
| >>>>> const*)'
| >>>> IODebugTrack.cpp:(.text+0xc38)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>>
| >>>> std::endl<char, std::char_traits<char>
| >>>> >(std::basic_ostream<char,
| >>>> std::char_traits<char> >&)'
| >>>> IODebugTrack.cpp:(.text+0xc40)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(std::basic___ostream<char, std::char_traits<char>
| >>>>> & (*)(std::basic_ostream<char,
| >>>> std::char_traits<char> >&))'
| >>>> IODebugTrack.cpp:(.text+0xc50)__: undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::flush()'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):
| >>>> In
| >>>> function
| >>>> `moab::IODebugTrack::all___reduce()':
| >>>> IODebugTrack.cpp:(.text+0xd08)__: undefined reference to
| >>>> `MPI_Comm_size'
| >>>> IODebugTrack.cpp:(.text+0xdfe)__: undefined reference to
| >>>> `MPI_Gather'
| >>>> IODebugTrack.cpp:(.text+__0x1080): undefined reference to
| >>>> `MPI_Gatherv'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):
| >>>> In
| >>>> function
| >>>> `__static_initialization_and___destruction_0(int, int)':
| >>>> IODebugTrack.cpp:(.text+__0x1221): undefined reference to
| >>>> `std::ios_base::Init::Init()'
| >>>> IODebugTrack.cpp:(.text+__0x1226): undefined reference to
| >>>> `std::ios_base::Init::~Init()'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):
| >>>> In
| >>>> function
| >>>> `std::list<moab::IODebugTrack:__:DRange,
| >>>> std::allocator<moab::__IODebugTrack::DRange>
| >>>>> ::_M_insert(std::_List___iterator<moab::IODebugTrack::__DRange>,
| >>>> moab::IODebugTrack::DRange const&)':
| >>>>
| >>>> IODebugTrack.cpp:(.text.___ZNSt4listIN4moab12IODebugTrack__6DRangeESaIS2_EE9_M___insertESt14_List_iteratorIS2___ERKS2_[std::list<moab::__IODebugTrack::DRange,
| >>>> std::allocator<moab::__IODebugTrack::DRange>
| >>>>> ::_M_insert(std::_List___iterator<moab::IODebugTrack::__DRange>,
| >>>>
| >>>> moab::IODebugTrack::DRange const&)]+0x3a): undefined reference
| >>>> to
| >>>>
| >>>> `std::__detail::_List_node___base::_M_hook(std::__detail::___List_node_base*)'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):
| >>>> In
| >>>> function
| >>>>
| >>>> `__gnu_cxx::new_allocator<std:__:_List_node<moab::__IODebugTrack::DRange>
| >>>> >::deallocate(std::_List_node<__moab::IODebugTrack::DRange>*,
| >>>> unsigned long)':
| >>>>
| >>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE10deallocateEPS5_m[__gnu___cxx::new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
| >>>> >::deallocate(std::_List_node<__moab::IODebugTrack::DRange>*,
| >>>> unsigned long)]+0x1c): undefined reference to
| >>>> `operator
| >>>> delete(void*)'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):
| >>>> In
| >>>> function
| >>>>
| >>>> `__gnu_cxx::new_allocator<__moab::IODebugTrack::DRange>::__allocate(unsigned
| >>>> long, void const*)':
| >>>>
| >>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE8allocateEmPKv[__gnu___cxx::new_allocator<moab::__IODebugTrack::DRange>::__allocate(unsigned
| >>>>
| >>>> long, void const*)]+0x2c): undefined reference to
| >>>> `std::__throw_bad_alloc()'
| >>>>
| >>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE8allocateEmPKv[__gnu___cxx::new_allocator<moab::__IODebugTrack::DRange>::__allocate(unsigned
| >>>>
| >>>> long, void const*)]+0x45): undefined reference to `operator
| >>>> new(unsigned long)'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):
| >>>> In
| >>>> function
| >>>>
| >>>> `__gnu_cxx::new_allocator<__moab::IODebugTrack::DRange>::__deallocate(moab::IODebugTrack:__:DRange*,
| >>>> unsigned
| >>>> long)':
| >>>>
| >>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE10deallocateEPS3_m[____gnu_cxx::new_allocator<moab::__IODebugTrack::DRange>::__deallocate(moab::IODebugTrack:__:DRange*,
| >>>>
| >>>> unsigned long)]+0x1c): undefined reference to `operator
| >>>> delete(void*)'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):
| >>>> In
| >>>> function
| >>>>
| >>>> `__gnu_cxx::new_allocator<std:__:_List_node<moab::__IODebugTrack::DRange>
| >>>>> ::allocate(unsigned long, void const*)':
| >>>>
| >>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE8allocateEmPKv[__gnu_cxx:__:new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
| >>>>
| >>>> >::allocate(unsigned long, void const*)]+0x2c): undefined
| >>>> reference to `std::__throw_bad_alloc()'
| >>>>
| >>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE8allocateEmPKv[__gnu_cxx:__:new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
| >>>>
| >>>> >::allocate(unsigned long, void const*)]+0x46): undefined
| >>>> reference to `operator new(unsigned long)'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):(.eh_frame+__0x24b):
| >>>> undefined reference to
| >>>> `__gxx_personality_v0'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o):
| >>>> In
| >>>> function
| >>>> `moab::operator<<(std::basic___ostream<char,
| >>>> std::char_traits<char> >&, moab::OrientedBox const&)':
| >>>>
| >>>> OrientedBox.cpp:(.text+0x97): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>> std::operator<<
| >>>> <std::char_traits<char> >(std::basic_ostream<char,
| >>>> std::char_traits<char> >&, char const*)'
| >>>> OrientedBox.cpp:(.text+0xaf): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>> std::operator<<
| >>>> <std::char_traits<char> >(std::basic_ostream<char,
| >>>> std::char_traits<char> >&, char const*)'
| >>>> OrientedBox.cpp:(.text+0xbc): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(double)'
| >>>> OrientedBox.cpp:(.text+0xc9): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>> std::operator<<
| >>>> <std::char_traits<char> >(std::basic_ostream<char,
| >>>> std::char_traits<char> >&, char const*)'
| >>>> OrientedBox.cpp:(.text+0xe1): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>> std::operator<<
| >>>> <std::char_traits<char> >(std::basic_ostream<char,
| >>>> std::char_traits<char> >&, char const*)'
| >>>> OrientedBox.cpp:(.text+0xee): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(double)'
| >>>> OrientedBox.cpp:(.text+0xfb): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>> std::operator<<
| >>>> <std::char_traits<char> >(std::basic_ostream<char,
| >>>> std::char_traits<char> >&, char const*)'
| >>>> OrientedBox.cpp:(.text+0x113): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char> >&
| >>>> std::operator<< <std::char_traits<char>
| >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
| >>>>> const*)'
| >>>> OrientedBox.cpp:(.text+0x120): undefined reference to
| >>>> `std::basic_ostream<char, std::char_traits<char>
| >>>> >::operator<<(double)'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o):
| >>>> In
| >>>> function
| >>>> `__static_initialization_and___destruction_0(int, int)':
| >>>> OrientedBox.cpp:(.text+0x3aaf)__: undefined reference to
| >>>> `std::ios_base::Init::Init()'
| >>>> OrientedBox.cpp:(.text+0x3ab4)__: undefined reference to
| >>>> `std::ios_base::Init::~Init()'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o):
| >>>> In
| >>>> function `moab::ErrorCode
| >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
| >>>> const&, double*, moab::CartVect*)':
| >>>>
| >>>> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
| >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
| >>>> const&, double*, moab::CartVect*)]+0xb7f):
| >>>>
| >>>> undefined
| >>>> reference to `std::cerr'
| >>>>
| >>>> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
| >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
| >>>> const&, double*, moab::CartVect*)]+0xb84):
| >>>>
| >>>> undefined
| >>>> reference to `std::basic_ostream<char, std::char_traits<char> >&
| >>>> std::operator<< <std::char_traits<char>
| >>>> >(std::basic_ostream<char, std::char_traits<char> >&, char
| >>>> const*)'
| >>>>
| >>>> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
| >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
| >>>> const&, double*, moab::CartVect*)]+0xb89):
| >>>>
| >>>> undefined
| >>>> reference to `std::basic_ostream<char, std::char_traits<char> >&
| >>>> std::endl<char, std::char_traits<char>
| >>>> >(std::basic_ostream<char, std::char_traits<char> >&)'
| >>>>
| >>>> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
| >>>> moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
| >>>> const&, double*, moab::CartVect*)]+0xb91):
| >>>> undefined
| >>>> reference to `std::basic_ostream<char, std::char_traits<char>
| >>>>> ::operator<<(std::basic___ostream<char,
| >>>>
| >>>> std::char_traits<char> >& (*)(std::basic_ostream<char,
| >>>> std::char_traits<char> >&))'
| >>>>
| >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o):(.eh_frame+__0x22f):
| >>>> undefined reference to
| >>>>
| >>>> `__gxx_personality_v0'
| >>>> collect2: ld returned 1 exit status
| >>>> make: *** [nek5000] Error 1
| >>>>
| >>>> Thanks,
| >>>> Ami
| >>>>
| >>>>
| >>>> _________________________________________________
| >>>> Nek5000-users mailing list
| >>>> Nek5000-users at lists.mcs.anl.__gov
| >>>> <mailto:Nek5000-users at lists.mcs.anl.gov>
| >>>> https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users
| >>>> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
| >>>>
| >>>>
| >>>> --
| >>>> ==============================__==============================__====
| >>>>
| >>>> "You will keep in perfect peace him whose mind is
| >>>> steadfast, because he trusts in you." Isaiah 26:3
| >>>>
| >>>> Tim Tautges Argonne National Laboratory
| >>>> (tautges at mcs.anl.gov <mailto:tautges at mcs.anl.gov>)
| >>>> (telecommuting from UW-Madison)
| >>>> phone (gvoice): (608) 354-1459 <tel:%28608%29%20354-1459> 1500
| >>>> Engineering Dr.
| >>>> fax: (608) 263-4499 <tel:%28608%29%20263-4499>
| >>>> Madison, WI 53706
| >>>>
| >>>> _________________________________________________
| >>>> Nek5000-users mailing list
| >>>> Nek5000-users at lists.mcs.anl.__gov
| >>>> <mailto:Nek5000-users at lists.mcs.anl.gov>
| >>>> https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users
| >>>> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
| >>>>
| >>>>
| >>>>
| >>>>
| >>>>
| >>>> _______________________________________________
| >>>> Nek5000-users mailing list
| >>>> Nek5000-users at lists.mcs.anl.gov
| >>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
| >>>>
| >>>
| >>> --
| >>> ================================================================
| >>> "You will keep in perfect peace him whose mind is
| >>> steadfast, because he trusts in you." Isaiah 26:3
| >>>
| >>> Tim Tautges Argonne National Laboratory
| >>> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
| >>> phone (gvoice): (608) 354-1459 1500 Engineering Dr.
| >>> fax: (608) 263-4499 Madison, WI 53706
| >>>
| >>> _______________________________________________
| >>> Nek5000-users mailing list
| >>> Nek5000-users at lists.mcs.anl.gov
| >>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
| >>
| >>
| >>
| >> _______________________________________________
| >> Nek5000-users mailing list
| >> Nek5000-users at lists.mcs.anl.gov
| >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
| >>
| >

| --
| ================================================================
| "You will keep in perfect peace him whose mind is
| steadfast, because he trusts in you." Isaiah 26:3

| Tim Tautges Argonne National Laboratory
| (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
| phone (gvoice): (608) 354-1459 1500 Engineering Dr.
| fax: (608) 263-4499 Madison, WI 53706
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