[Nek5000-users] Problem with multiple file inut

nek5000-users at lists.mcs.anl.gov nek5000-users at lists.mcs.anl.gov
Mon Jun 3 07:41:38 CDT 2013


>From the lines of your logfile, I see the first filename G1_640.f00005 read correctly

 Reading checkpoint data
     0       1 OPEN: G1_640.f00005

while the next filename you are trying to read shows up as

     0       1 OPEN: .fld

which means the second file Nek is trying to read is ".fld" for some reason -- I would suggest checking how you set the filename for the second file.

Aleks 

----- Original Message -----
From: nek5000-users at lists.mcs.anl.gov
To: nek5000-users at lists.mcs.anl.gov
Sent: Monday, June 3, 2013 7:23:22 AM
Subject: Re: [Nek5000-users] Problem with multiple file inut

I am sorry, I don't understand your reply:

my rea file tells me that p66 and p67 specify binary or ascii. We use always binary.
How does the particular name file enter?

  

Am 03.06.2013 um 14:17 schrieb nek5000-users at lists.mcs.anl.gov:

> For the default/.f format you do not need to set p66 & 67 yourself but I would start with a printout of your p66 and p67 together with the filename you want to read.
> 
> Aleks
> 
> ----- Original Message -----
> From: nek5000-users at lists.mcs.anl.gov
> To: nek5000-users at lists.mcs.anl.gov
> Sent: Monday, June 3, 2013 7:11:25 AM
> Subject: Re: [Nek5000-users] Problem with multiple file inut
> 
> Aleks, what does this mean in my particular case.
> 
> Which name should the files have and which value should I prescribe for p66 and p67.
> 
> Thanks a lot, Joerg.
> 
> 
> Am 03.06.2013 um 14:05 schrieb nek5000-users at lists.mcs.anl.gov:
> 
>> If I am not mistaken p66 and p67 are reset to be equal to 6 later in the code for .f/default format.  
>> 
>> The printed filename though has the empty base and extension .fld as if p67 is 4...
>> 
>> Aleks
>> 
>> 
>> ----- Original Message -----
>> From: nek5000-users at lists.mcs.anl.gov
>> To: nek5000-users at lists.mcs.anl.gov
>> Sent: Monday, June 3, 2013 7:00:15 AM
>> Subject: Re: [Nek5000-users] Problem with multiple file inut
>> 
>> Hi Aleks,
>> 
>> p66 and p67 is set to 0.000E+00
>> 
>> Thanks
>> 
>> Am 03.06.2013 um 13:52 schrieb nek5000-users at lists.mcs.anl.gov:
>> 
>>> Hi Joerg,
>>> 
>>> Most likely -- for some reason, the reading routines get a filename ".fld":
>>> 
>>>     0       1 OPEN: .fld
>>> .fld
>>> 
>>> so you might also want to check a value of parameter(67)
>>> 
>>> Best.
>>> Aleks
>>> 
>>> ----- Original Message -----
>>> From: nek5000-users at lists.mcs.anl.gov
>>> To: nek5000-users at lists.mcs.anl.gov
>>> Sent: Monday, June 3, 2013 5:46:23 AM
>>> Subject: [Nek5000-users] Problem with multiple file inut
>>> 
>>> Hi Neks,
>>> 
>>> we want to run a post processing job analyzing further things of our full production job.
>>> For output in single file things work well with the following patch of code in the usr file of
>>> the analysis program:
>>> 
>>>    IF (istep.eq.1) THEN
>>> 
>>>     do k=1,xx
>>>      WRITE(fldfle,'("G1_640.f",I5.5)')k  
>>>      initc(1) = trim(fldfle)
>>>      call restart(1)
>>> 
>>>      …… do your analysis……..
>>> 
>>>    enddo
>>> 
>>>    ENDIF
>>> 
>>> It does the analysis for xx snapshots G1_640.f00001 to G1_640.f000xx that we generated 
>>> before.
>>> 
>>> Bigger jobs requires multiple file outputs, e.g. here each snapshot goes into 4 separate files
>>> G1_640.f0000x to G1_643.f0000x 
>>> 
>>> I thought that the corresponding extension should do it:
>>> 
>>> 
>>>    IF (istep.eq.1) THEN
>>> 
>>>     do k=1,xx
>>>      k1=4+k
>>>      WRITE(fldfle,'("G1_64?.f",I5.5)')k1  
>>>      initc(1) = trim(fldfle)
>>>      call restart(4)
>>> 
>>>      …… do your analysis……..
>>> 
>>>     enddo
>>> 
>>>    ENDIF
>>> 
>>> 
>>> the patch of log file (see below) indicates that the program reads G1_640.f00005 to G1_643.f00005 correctly and
>>> gets stuck afterwards when trying to read the four files G1_64*.f00006:
>>> 
>>> 
>>> 
>>> New CG1-tolerance (RINIT*epsm) =  0.874462285180112059E-17 0.607013350432080170E-25
>>> 1     1 Helmholtz VELZ    F:   8.7446E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1     2 Helmholtz VELZ    F:   4.5200E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1     3 Helmholtz VELZ    F:   3.1000E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1     4 Helmholtz VELZ    F:   2.4871E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1     5 Helmholtz VELZ    F:   2.0362E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1     6 Helmholtz VELZ    F:   1.7312E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1     7 Helmholtz VELZ    F:   1.4629E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1     8 Helmholtz VELZ    F:   1.2836E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1     9 Helmholtz VELZ    F:   1.1274E-05   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    10 Helmholtz VELZ    F:   9.7394E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    11 Helmholtz VELZ    F:   8.3244E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    12 Helmholtz VELZ    F:   6.8927E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    13 Helmholtz VELZ    F:   5.5410E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    14 Helmholtz VELZ    F:   4.4505E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    15 Helmholtz VELZ    F:   3.5729E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    16 Helmholtz VELZ    F:   2.8812E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    17 Helmholtz VELZ    F:   2.3406E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    18 Helmholtz VELZ    F:   1.9136E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    19 Helmholtz VELZ    F:   1.5656E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    20 Helmholtz VELZ    F:   1.2877E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    21 Helmholtz VELZ    F:   1.0656E-06   1.0000E-06   8.3666E-05   2.0000E+02
>>> 1    22 Helmholtz VELZ    F:   8.8191E-07   1.0000E-06   8.3666E-05   2.0000E+02
>>>        1    Hmholtz VELZ:     21   8.8191E-07   8.7446E-05   1.0000E-06
>>>             L1/L2 DIV(V)    :   2.0122E-21   5.8478E-05
>>>             L1/L2 QTL       :   0.0000E+00   0.0000E+00
>>>             L1/L2 DIV(V)-QTL:   2.0122E-21   5.8478E-05
>>>        1   5.0000E-03  2.8596E+00 Fluid done
>>> filt amp  .0000  .0000  .0000  .0000  .0000  .0000  .0000  .0000  .0000  .0000  .0000  .0500
>>> filt trn 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000  .9500
>>>     1  5.0000E-03 -1.3839E-88  1.0000E+00 -3.9134E-06  3.9717E-06 uz_t_mx
>>> Reading checkpoint data
>>>     0       1 OPEN: G1_640.f00005
>>> byte swap: F 6.543210030 -0.2931277218E+36
>>> 12288       1 OPEN: G1_643.f00005
>>>  4096       1 OPEN: G1_641.f00005
>>>  8192       1 OPEN: G1_642.f00005
>>> 
>>>      1  2.2370E+02 done :: Read checkpoint data
>>>                            avg data-throughput =   -80.6MBps
>>>                            io-nodes =     4
>>> 
>>>     0       1 OPEN: .fld
>>> .fld
>>> byte_read() :: fopen failure2!
>>> 
>>> 
>>> Parameter 65 in the rea file is set to 4. Could it be that the initc is not correctly set? 
>>> 
>>> Thanks a lot, Joerg.
>>> 
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