[Nek5000-users] Performance problem

[nek5000-users at lists.mcs.anl.gov]

It also looks like your tolerances are a bit tight.  tolrel of
1.e-3 or 1.e-4 should be plenty (even 1.e-2).

Paul

On Fri, 6 Aug 2010, nek5000-users at lists.mcs.anl.gov wrote:

>
>
>> - set param(102) and param(103) to 5 (this will turn on the residual 
>> projection)
>
>    Should this be param 94 & 95 ?
>
>    - Paul
>
>
>
>
> On Fri, 6 Aug 2010, nek5000-users at lists.mcs.anl.gov wrote:
>
>> Ok here are some suggestions to improve the performance:
>> 
>> - set timestep, param(12), to -3e-5
>> - set param(102) and param(103) to 5 (this will turn on the residual 
>> projection)
>> - increase lgmres (in SIZE) to 40
>> - you have want to tune the Helmholtz (velocity) and pressure tolerance 
>> (e.g. 1e-8 and 1e-5)
>> 
>> btw: what's the Reynolds number of this flow?
>> 
>> 
>> Stefan
>> 
>> 
>> On Aug 6, 2010, at 11:13 AM, <nek5000-users at lists.mcs.anl.gov> 
>> <nek5000-users at lists.mcs.anl.gov> wrote:
>> 
>>> Dear Mani,
>>> 
>>> I haven't checked your logfile yet but there are my first thoughts:
>>> 
>>> N=4 is low
>>> Your polynomial order (N=4) is low and the tensor-product formulation 
>>> won't buy you much. The performance of all matrix-matrix multiplies (MxM) 
>>> will limited by the memory access times. This is in particular a problem 
>>> on multi-core and multi-socket machines. We have seen that the performance 
>>> drop can be significant.
>>> On top of that you carry around a large number of duplicate DOF and your 
>>> surface to volume ratio is high (more communication). I
>>> 
>>> 
>>> Parallel Performance
>>> Your gridpoints per core (~4700) is quite small!
>>> On Blue Gene (BG) systems we can scale well (e.g. 70-80% parallel 
>>> efficiency) with around 10k gridpoints per core. On other system (e.g. 
>>> Cray XT5) you need much more gridpoints per core (say 80k) because the 
>>> network has a higher latency (NEK is sensitive to latency not bandwidth) 
>>> and the processors are much faster.
>>> 
>>> Cheers,
>>> Stefan
>>> 
>>> On Aug 6, 2010, at 10:51 AM, <nek5000-users at lists.mcs.anl.gov> wrote:
>>> 
>>>> Hi,
>>>>
>>>>   I'm solving for Rayleigh-Benard convection in a 3D box of 37632, 4rth 
>>>> order elements. I fired the job on 512 processors on a machine with 
>>>> quad-core, quad socket configuration (32 nodes with 16 cores each ) with 
>>>> a 20 Gbps infiniband interconnect. In 12 hours it has run 163 time steps. 
>>>> Is this normal or is there maybe some way to improve performance? 
>>>> Attached is the SIZE file.
>>>> 
>>>> Regards,
>>>> Mani chandra
>>>> 
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