[mpich-discuss] problem installing with Macports on Snow Leopard
Stephen Siegel
siegel at udel.edu
Tue Oct 30 13:29:55 CDT 2012
usr$ sudo port selfupdate
Password:
---> Updating MacPorts base sources using rsync
MacPorts base version 2.1.2 installed,
MacPorts base version 2.1.2 downloaded.
---> Updating the ports tree
---> MacPorts base is already the latest version
The ports tree has been updated. To upgrade your installed ports, you should run
port upgrade outdated
usr$ sudo port clean mpich2
---> Cleaning mpich2
usr$ sudo port install mpich2
---> Computing dependencies for mpich2
---> Fetching archive for mpich2
---> Attempting to fetch mpich2-1.5_4.darwin_12.x86_64.tbz2 from http://packages.macports.org/mpich2
---> Attempting to fetch mpich2-1.5_4.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/mpich2
---> Attempting to fetch mpich2-1.5_4.darwin_12.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/mpich2
---> Fetching distfiles for mpich2
---> Verifying checksum(s) for mpich2
---> Extracting mpich2
---> Configuring mpich2
---> Building mpich2
Error: org.macports.build for port mpich2 returned: command execution failed
Please see the log file for port mpich2 for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/main.log
To report a bug, follow the instructions in the guide:
http://guide.macports.org/#project.tickets
Error: Processing of port mpich2 failed
usr$
On Oct 30, 2012, at 12:05 PM, Darius Buntinas <buntinas at mcs.anl.gov> wrote:
>
> I'm still running Lion, but when I installed either mpich2 or mpich2-devel, it found a binary package, so it didn't need to compile it.
>
> Do a "sudo port clean mpich2" (or mpich2-devel), then "sudo port install mpich2" and let us know what it says after "---> Fetching archive for mpich2". Mine says:
>
> ---> Fetching archive for mpich2
> ---> Attempting to fetch mpich2-1.5_4.darwin_11.x86_64.tbz2 from http://packages.macports.org/mpich2
>
> -d
>
>
>
> On Oct 29, 2012, at 8:48 PM, Stephen Siegel wrote:
>
>> Hi mpich2 team:
>>
>> I'm having trouble installing mpich2 on my Mac using Macports. I just upgraded to the latest OS X (10.8, Mountain Lion). I installed XCode and the command line tools. I even cleared out my old Macports directory (/opt/...) and started all over again. I tried to "sudo port install mpich2" and everything worked fine until this big link command (see below), which ends with clang seg-faulting. Any ideas?
>> -steve
>>
>>
>> cat /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/main.log
>>
>> ...
>>
>> :info:build libtool: link: /usr/bin/clang -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o lib/.libs/libmpich.8.dylib src/mpi/attr/.libs/attrutil.o src/mpi/attr/.libs/dup_fn.o src/mpi/coll/.libs/allred_group.o src/mpi/coll/.libs/barrier_group.o src/mpi/coll/.libs/helper_fns.o src/mpi/coll/.libs/opsum.o src/mpi/coll/.libs/opmax.o src/mpi/coll/.libs/opmin.o src/mpi/coll/.libs/opband.o src/mpi/coll/.libs/opbor.o src/mpi/coll/.libs/opbxor.o src/mpi/coll/.libs/opland.o src/mpi/coll/.libs/oplor.o src/mpi/coll/.libs/oplxor.o src/mpi/coll/.libs/opprod.o src/mpi/coll/.libs/opminloc.o src/mpi/coll/.libs/opmaxloc.o src/mpi/coll/.libs/opno_op.o src/mpi/coll/.libs/opreplace.o src/mpi/coll/.libs/nbcutil.o src/mpi/comm/.libs/commutil.o src/mpi/datatype/.libs/typeutil.o src/mpi/errhan/.libs/errutil.o src/mpi/errhan/.libs/dynerrutil.o src/mpi/group/.libs/grouputil.o src/mpi/init/.libs/initinfo.o src/mpi/init/.libs/async.o src/mpi/pt2pt/.libs/bsendutil.o src/mpi/pt2pt/.libs/mpir_request.o s
> rc
>> /mpi/rma/.libs/winutil.o src/mpi/rma/.libs/rmatypeutil.o src/mpi/timer/.libs/mpidtime.o src/mpi/topo/.libs/topoutil.o src/util/dbg/.libs/dbg_printf.o src/util/dbg/.libs/timelimit.o src/util/dbg/.libs/exit.o src/util/info/.libs/infoutil.o src/util/instrm/.libs/states.o src/util/instrm/.libs/instr.o src/util/mem/.libs/trmem.o src/util/mem/.libs/handlemem.o src/util/mem/.libs/safestr.o src/util/mem/.libs/argstr.o src/util/mem/.libs/strerror.o src/util/msgs/.libs/msgprint.o src/util/other/.libs/outliers.o src/util/other/.libs/assert.o src/util/param/.libs/param_vals.o src/util/procmap/.libs/local_proc.o src/util/thread/.libs/mpiu_thread.o src/glue/romio/.libs/glue_romio.o src/mpid/ch3/src/.libs/ch3u_buffer.o src/mpid/ch3/src/.libs/ch3u_comm.o src/mpid/ch3/src/.libs/ch3u_comm_spawn_multiple.o src/mpid/ch3/src/.libs/ch3u_handle_connection.o src/mpid/ch3/src/.libs/ch3u_handle_recv_pkt.o src/mpid/ch3/src/.libs/ch3u_handle_recv_req.o src/mpid/ch3/src/.libs/ch3u_handle_send_req.o src
> /
>> mpid/ch3/src/.libs/ch3u_port.o src/mpid/ch3/src/.libs/ch3u_recvq.o src/mpid/ch3/src/.libs/ch3u_request.o src/mpid/ch3/src/.libs/ch3u_rma_notimpl.o src/mpid/ch3/src/.libs/ch3u_rma_acc_ops.o src/mpid/ch3/src/.libs/ch3u_rma_ops.o src/mpid/ch3/src/.libs/ch3u_rma_sync.o src/mpid/ch3/src/.libs/ch3u_rndv.o src/mpid/ch3/src/.libs/ch3u_eager.o src/mpid/ch3/src/.libs/ch3u_eagersync.o src/mpid/ch3/src/.libs/ch3u_win_fns.o src/mpid/ch3/src/.libs/mpid_abort.o src/mpid/ch3/src/.libs/mpid_cancel_recv.o src/mpid/ch3/src/.libs/mpid_cancel_send.o src/mpid/ch3/src/.libs/mpid_comm_disconnect.o src/mpid/ch3/src/.libs/mpid_comm_group_failed.o src/mpid/ch3/src/.libs/mpid_comm_reenable_anysource.o src/mpid/ch3/src/.libs/mpid_comm_spawn_multiple.o src/mpid/ch3/src/.libs/mpid_finalize.o src/mpid/ch3/src/.libs/mpid_get_universe_size.o src/mpid/ch3/src/.libs/mpid_getpname.o src/mpid/ch3/src/.libs/mpid_improbe.o src/mpid/ch3/src/.libs/mpid_imrecv.o src/mpid/ch3/src/.libs/mpid_init.o src/mpid/ch3/src/.l
> i
>> bs/mpid_iprobe.o src/mpid/ch3/src/.libs/mpid_irecv.o src/mpid/ch3/src/.libs/mpid_irsend.o src/mpid/ch3/src/.libs/mpid_isend.o src/mpid/ch3/src/.libs/mpid_issend.o src/mpid/ch3/src/.libs/mpid_mprobe.o src/mpid/ch3/src/.libs/mpid_mrecv.o src/mpid/ch3/src/.libs/mpid_port.o src/mpid/ch3/src/.libs/mpid_probe.o src/mpid/ch3/src/.libs/mpid_recv.o src/mpid/ch3/src/.libs/mpid_rsend.o src/mpid/ch3/src/.libs/mpid_send.o src/mpid/ch3/src/.libs/mpid_ssend.o src/mpid/ch3/src/.libs/mpid_startall.o src/mpid/ch3/src/.libs/mpid_vc.o src/mpid/ch3/src/.libs/mpid_rma.o src/mpid/ch3/src/.libs/mpidi_isend_self.o src/mpid/ch3/src/.libs/mpidi_pg.o src/mpid/ch3/src/.libs/mpidi_printf.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_finalize.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_init.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_isend.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_isendv.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_istartmsg.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_istartms
> g
>> v.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_progress.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_abort.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_rma_shm.o src/mpid/ch3/channels/nemesis/src/.libs/ch3_win_fns.o src/mpid/ch3/channels/nemesis/src/.libs/ch3i_comm.o src/mpid/ch3/channels/nemesis/src/.libs/ch3i_eagernoncontig.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_alloc.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_init.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_queue.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_barrier.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_mpich2.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_ckpt.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_finalize.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_network_poll.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_network.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_debug.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_lmt.o src/mpid/ch3/chan
> n
>> els/nemesis/src/.libs/mpid_nem_lmt_shm.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_net_array.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_lmt_dma.o src/mpid/ch3/channels/nemesis/src/.libs/mpid_nem_lmt_vmsplice.o src/mpid/ch3/channels/nemesis/netmod/tcp/.libs/tcp_finalize.o src/mpid/ch3/channels/nemesis/netmod/tcp/.libs/tcp_init.o src/mpid/ch3/channels/nemesis/netmod/tcp/.libs/tcp_send.o src/mpid/ch3/channels/nemesis/netmod/tcp/.libs/tcp_utility.o src/mpid/ch3/channels/nemesis/netmod/tcp/.libs/socksm.o src/mpid/ch3/channels/nemesis/netmod/tcp/.libs/tcp_getip.o src/mpid/ch3/channels/nemesis/netmod/tcp/.libs/tcp_ckpt.o src/mpid/ch3/channels/nemesis/netmod/none/.libs/none.o src/mpid/ch3/channels/nemesis/utils/monitor/.libs/papi_defs.o src/mpid/ch3/channels/nemesis/utils/replacements/.libs/mkstemp.o src/mpid/common/datatype/dataloop/.libs/darray_support.o src/mpid/common/datatype/dataloop/.libs/dataloop.o src/mpid/common/datatype/dataloop/.libs/dataloop_create.o src
> /
>> mpid/common/datatype/dataloop/.libs/dataloop_create_blockindexed.o src/mpid/common/datatype/dataloop/.libs/dataloop_create_contig.o src/mpid/common/datatype/dataloop/.libs/dataloop_create_indexed.o src/mpid/common/datatype/dataloop/.libs/dataloop_create_pairtype.o src/mpid/common/datatype/dataloop/.libs/dataloop_create_struct.o src/mpid/common/datatype/dataloop/.libs/dataloop_create_vector.o src/mpid/common/datatype/dataloop/.libs/segment.o src/mpid/common/datatype/dataloop/.libs/segment_count.o src/mpid/common/datatype/dataloop/.libs/segment_flatten.o src/mpid/common/datatype/dataloop/.libs/segment_packunpack.o src/mpid/common/datatype/dataloop/.libs/subarray_support.o src/mpid/common/datatype/.libs/mpid_contents_support.o src/mpid/common/datatype/.libs/mpid_datatype_contents.o src/mpid/common/datatype/.libs/mpid_datatype_free.o src/mpid/common/datatype/.libs/mpid_ext32_datatype.o src/mpid/common/datatype/.libs/mpid_ext32_segment.o src/mpid/common/datatype/.libs/mpid_segme
> n
>> t.o src/mpid/common/datatype/.libs/mpid_type_blockindexed.o src/mpid/common/datatype/.libs/mpid_type_commit.o src/mpid/common/datatype/.libs/mpid_type_contiguous.o src/mpid/common/datatype/.libs/mpid_type_create_pairtype.o src/mpid/common/datatype/.libs/mpid_type_create_resized.o src/mpid/common/datatype/.libs/mpid_type_debug.o src/mpid/common/datatype/.libs/mpid_type_dup.o src/mpid/common/datatype/.libs/mpid_type_get_contents.o src/mpid/common/datatype/.libs/mpid_type_get_envelope.o src/mpid/common/datatype/.libs/mpid_type_indexed.o src/mpid/common/datatype/.libs/mpid_type_struct.o src/mpid/common/datatype/.libs/mpid_type_vector.o src/mpid/common/datatype/.libs/mpid_type_zerolen.o src/mpid/common/datatype/.libs/mpir_type_flatten.o src/mpid/common/datatype/.libs/mpir_type_get_contig_blocks.o src/mpid/common/sched/.libs/mpid_sched.o src/mpid/common/thread/.libs/mpid_thread.o src/mpi_t/.libs/mpi_t_util.o src/nameserv/file/.libs/file_nameserv.o src/pmi/simple/.libs/simple_pmiu
> t
>> il.o src/pmi/simple/.libs/simple_pmi.o src/mpi/attr/.libs/attr_delete.o src/mpi/attr/.libs/attr_get.o src/mpi/attr/.libs/attr_put.o src/mpi/attr/.libs/comm_create_keyval.o src/mpi/attr/.libs/comm_delete_attr.o src/mpi/attr/.libs/comm_free_keyval.o src/mpi/attr/.libs/comm_get_attr.o src/mpi/attr/.libs/comm_set_attr.o src/mpi/attr/.libs/keyval_create.o src/mpi/attr/.libs/keyval_free.o src/mpi/attr/.libs/type_create_keyval.o src/mpi/attr/.libs/type_delete_attr.o src/mpi/attr/.libs/type_free_keyval.o src/mpi/attr/.libs/type_get_attr.o src/mpi/attr/.libs/type_set_attr.o src/mpi/attr/.libs/win_create_keyval.o src/mpi/attr/.libs/win_delete_attr.o src/mpi/attr/.libs/win_free_keyval.o src/mpi/attr/.libs/win_get_attr.o src/mpi/attr/.libs/win_set_attr.o src/mpi/coll/.libs/allreduce.o src/mpi/coll/.libs/barrier.o src/mpi/coll/.libs/op_create.o src/mpi/coll/.libs/op_free.o src/mpi/coll/.libs/bcast.o src/mpi/coll/.libs/alltoall.o src/mpi/coll/.libs/alltoallv.o src/mpi/coll/.libs/reduce.o
>
>> src/mpi/coll/.libs/scatter.o src/mpi/coll/.libs/gather.o src/mpi/coll/.libs/scatterv.o src/mpi/coll/.libs/gatherv.o src/mpi/coll/.libs/scan.o src/mpi/coll/.libs/exscan.o src/mpi/coll/.libs/allgather.o src/mpi/coll/.libs/allgatherv.o src/mpi/coll/.libs/red_scat.o src/mpi/coll/.libs/alltoallw.o src/mpi/coll/.libs/reduce_local.o src/mpi/coll/.libs/op_commutative.o src/mpi/coll/.libs/red_scat_block.o src/mpi/coll/.libs/iallgather.o src/mpi/coll/.libs/iallgatherv.o src/mpi/coll/.libs/iallreduce.o src/mpi/coll/.libs/ialltoall.o src/mpi/coll/.libs/ialltoallv.o src/mpi/coll/.libs/ialltoallw.o src/mpi/coll/.libs/ibarrier.o src/mpi/coll/.libs/ibcast.o src/mpi/coll/.libs/iexscan.o src/mpi/coll/.libs/igather.o src/mpi/coll/.libs/igatherv.o src/mpi/coll/.libs/ired_scat.o src/mpi/coll/.libs/ired_scat_block.o src/mpi/coll/.libs/ireduce.o src/mpi/coll/.libs/iscan.o src/mpi/coll/.libs/iscatter.o src/mpi/coll/.libs/iscatterv.o src/mpi/comm/.libs/comm_compare.o src/mpi/comm/.libs/comm_create.
> o
>> src/mpi/comm/.libs/comm_create_group.o src/mpi/comm/.libs/comm_dup.o src/mpi/comm/.libs/comm_free.o src/mpi/comm/.libs/comm_get_name.o src/mpi/comm/.libs/comm_group.o src/mpi/comm/.libs/comm_idup.o src/mpi/comm/.libs/comm_rank.o src/mpi/comm/.libs/comm_size.o src/mpi/comm/.libs/comm_remote_group.o src/mpi/comm/.libs/comm_remote_size.o src/mpi/comm/.libs/comm_set_name.o src/mpi/comm/.libs/comm_split.o src/mpi/comm/.libs/comm_test_inter.o src/mpi/comm/.libs/intercomm_create.o src/mpi/comm/.libs/intercomm_merge.o src/mpi/comm/.libs/comm_split_type.o src/mpi/comm/.libs/comm_group_failed.o src/mpi/comm/.libs/comm_reenable_anysource.o src/mpi/comm/.libs/comm_remote_group_failed.o src/mpi/datatype/.libs/address.o src/mpi/datatype/.libs/get_address.o src/mpi/datatype/.libs/get_count.o src/mpi/datatype/.libs/get_elements.o src/mpi/datatype/.libs/pack.o src/mpi/datatype/.libs/unpack.o src/mpi/datatype/.libs/pack_size.o src/mpi/datatype/.libs/status_set_elements.o src/mpi/datatype/.l
> i
>> bs/type_get_name.o src/mpi/datatype/.libs/type_set_name.o src/mpi/datatype/.libs/type_size.o src/mpi/datatype/.libs/type_extent.o src/mpi/datatype/.libs/type_vector.o src/mpi/datatype/.libs/type_commit.o src/mpi/datatype/.libs/type_indexed.o src/mpi/datatype/.libs/type_hindexed.o src/mpi/datatype/.libs/type_struct.o src/mpi/datatype/.libs/type_contiguous.o src/mpi/datatype/.libs/type_free.o src/mpi/datatype/.libs/type_hvector.o src/mpi/datatype/.libs/type_dup.o src/mpi/datatype/.libs/type_get_envelope.o src/mpi/datatype/.libs/type_get_contents.o src/mpi/datatype/.libs/type_ub.o src/mpi/datatype/.libs/type_lb.o src/mpi/datatype/.libs/type_get_extent.o src/mpi/datatype/.libs/type_get_true_extent.o src/mpi/datatype/.libs/type_match_size.o src/mpi/datatype/.libs/type_create_struct.o src/mpi/datatype/.libs/type_create_hindexed.o src/mpi/datatype/.libs/type_create_hvector.o src/mpi/datatype/.libs/pack_external.o src/mpi/datatype/.libs/pack_external_size.o src/mpi/datatype/.libs/u
> n
>> pack_external.o src/mpi/datatype/.libs/type_create_indexed_block.o src/mpi/datatype/.libs/type_create_hindexed_block.o src/mpi/datatype/.libs/type_create_resized.o src/mpi/datatype/.libs/type_create_darray.o src/mpi/datatype/.libs/type_create_subarray.o src/mpi/errhan/.libs/add_error_code.o src/mpi/errhan/.libs/add_error_class.o src/mpi/errhan/.libs/add_error_string.o src/mpi/errhan/.libs/comm_call_errhandler.o src/mpi/errhan/.libs/comm_create_errhandler.o src/mpi/errhan/.libs/comm_get_errhandler.o src/mpi/errhan/.libs/comm_set_errhandler.o src/mpi/errhan/.libs/errhandler_create.o src/mpi/errhan/.libs/errhandler_free.o src/mpi/errhan/.libs/errhandler_get.o src/mpi/errhan/.libs/errhandler_set.o src/mpi/errhan/.libs/error_class.o src/mpi/errhan/.libs/error_string.o src/mpi/errhan/.libs/file_create_errhandler.o src/mpi/errhan/.libs/file_get_errhandler.o src/mpi/errhan/.libs/file_set_errhandler.o src/mpi/errhan/.libs/file_call_errhandler.o src/mpi/errhan/.libs/win_create_errhan
> d
>> ler.o src/mpi/errhan/.libs/win_call_errhandler.o src/mpi/errhan/.libs/win_get_errhandler.o src/mpi/errhan/.libs/win_set_errhandler.o src/mpi/group/.libs/group_compare.o src/mpi/group/.libs/group_difference.o src/mpi/group/.libs/group_excl.o src/mpi/group/.libs/group_free.o src/mpi/group/.libs/group_incl.o src/mpi/group/.libs/group_intersection.o src/mpi/group/.libs/group_range_excl.o src/mpi/group/.libs/group_range_incl.o src/mpi/group/.libs/group_rank.o src/mpi/group/.libs/group_size.o src/mpi/group/.libs/group_translate_ranks.o src/mpi/group/.libs/group_union.o src/mpi/init/.libs/abort.o src/mpi/init/.libs/init.o src/mpi/init/.libs/initialized.o src/mpi/init/.libs/initthread.o src/mpi/init/.libs/ismain.o src/mpi/init/.libs/finalize.o src/mpi/init/.libs/finalized.o src/mpi/init/.libs/querythread.o src/mpi/misc/.libs/getpname.o src/mpi/misc/.libs/pcontrol.o src/mpi/misc/.libs/version.o src/mpi/pt2pt/.libs/bsend.o src/mpi/pt2pt/.libs/bsend_init.o src/mpi/pt2pt/.libs/bufattac
> h
>> .o src/mpi/pt2pt/.libs/buffree.o src/mpi/pt2pt/.libs/cancel.o src/mpi/pt2pt/.libs/greq_start.o src/mpi/pt2pt/.libs/greq_complete.o src/mpi/pt2pt/.libs/ibsend.o src/mpi/pt2pt/.libs/improbe.o src/mpi/pt2pt/.libs/imrecv.o src/mpi/pt2pt/.libs/iprobe.o src/mpi/pt2pt/.libs/irecv.o src/mpi/pt2pt/.libs/irsend.o src/mpi/pt2pt/.libs/isend.o src/mpi/pt2pt/.libs/issend.o src/mpi/pt2pt/.libs/mprobe.o src/mpi/pt2pt/.libs/mrecv.o src/mpi/pt2pt/.libs/probe.o src/mpi/pt2pt/.libs/recv.o src/mpi/pt2pt/.libs/recv_init.o src/mpi/pt2pt/.libs/request_free.o src/mpi/pt2pt/.libs/request_get_status.o src/mpi/pt2pt/.libs/rsend.o src/mpi/pt2pt/.libs/rsend_init.o src/mpi/pt2pt/.libs/send.o src/mpi/pt2pt/.libs/send_init.o src/mpi/pt2pt/.libs/sendrecv.o src/mpi/pt2pt/.libs/sendrecv_rep.o src/mpi/pt2pt/.libs/status_set_cancelled.o src/mpi/pt2pt/.libs/ssend.o src/mpi/pt2pt/.libs/ssend_init.o src/mpi/pt2pt/.libs/start.o src/mpi/pt2pt/.libs/startall.o src/mpi/pt2pt/.libs/test.o src/mpi/pt2pt/.libs/test_cance
> l
>> led.o src/mpi/pt2pt/.libs/testall.o src/mpi/pt2pt/.libs/testany.o src/mpi/pt2pt/.libs/testsome.o src/mpi/pt2pt/.libs/wait.o src/mpi/pt2pt/.libs/waitall.o src/mpi/pt2pt/.libs/waitany.o src/mpi/pt2pt/.libs/waitsome.o src/mpi/rma/.libs/accumulate.o src/mpi/rma/.libs/alloc_mem.o src/mpi/rma/.libs/compare_and_swap.o src/mpi/rma/.libs/fetch_and_op.o src/mpi/rma/.libs/free_mem.o src/mpi/rma/.libs/get.o src/mpi/rma/.libs/get_accumulate.o src/mpi/rma/.libs/put.o src/mpi/rma/.libs/raccumulate.o src/mpi/rma/.libs/rget.o src/mpi/rma/.libs/rget_accumulate.o src/mpi/rma/.libs/rput.o src/mpi/rma/.libs/win_allocate.o src/mpi/rma/.libs/win_allocate_shared.o src/mpi/rma/.libs/win_attach.o src/mpi/rma/.libs/win_complete.o src/mpi/rma/.libs/win_create.o src/mpi/rma/.libs/win_create_dynamic.o src/mpi/rma/.libs/win_detach.o src/mpi/rma/.libs/win_fence.o src/mpi/rma/.libs/win_flush.o src/mpi/rma/.libs/win_flush_all.o src/mpi/rma/.libs/win_flush_local.o src/mpi/rma/.libs/win_flush_local_all.o src/
> m
>> pi/rma/.libs/win_free.o src/mpi/rma/.libs/win_get_group.o src/mpi/rma/.libs/win_get_name.o src/mpi/rma/.libs/win_lock.o src/mpi/rma/.libs/win_lock_all.o src/mpi/rma/.libs/win_post.o src/mpi/rma/.libs/win_set_name.o src/mpi/rma/.libs/win_shared_query.o src/mpi/rma/.libs/win_start.o src/mpi/rma/.libs/win_sync.o src/mpi/rma/.libs/win_test.o src/mpi/rma/.libs/win_unlock.o src/mpi/rma/.libs/win_unlock_all.o src/mpi/rma/.libs/win_wait.o src/mpi/spawn/.libs/comm_disconnect.o src/mpi/spawn/.libs/comm_get_parent.o src/mpi/spawn/.libs/comm_join.o src/mpi/spawn/.libs/comm_spawn.o src/mpi/spawn/.libs/comm_spawn_multiple.o src/mpi/spawn/.libs/lookup_name.o src/mpi/spawn/.libs/publish_name.o src/mpi/spawn/.libs/unpublish_name.o src/mpi/spawn/.libs/open_port.o src/mpi/spawn/.libs/close_port.o src/mpi/spawn/.libs/comm_connect.o src/mpi/spawn/.libs/comm_accept.o src/mpi/timer/.libs/wtime.o src/mpi/timer/.libs/wtick.o src/mpi/topo/.libs/cart_coords.o src/mpi/topo/.libs/cart_create.o src/mpi/
> t
>> opo/.libs/cart_get.o src/mpi/topo/.libs/cart_map.o src/mpi/topo/.libs/cart_rank.o src/mpi/topo/.libs/cart_shift.o src/mpi/topo/.libs/cart_sub.o src/mpi/topo/.libs/dims_create.o src/mpi/topo/.libs/graph_get.o src/mpi/topo/.libs/graph_map.o src/mpi/topo/.libs/graph_nbr.o src/mpi/topo/.libs/graphcreate.o src/mpi/topo/.libs/graphdimsget.o src/mpi/topo/.libs/graphnbrcnt.o src/mpi/topo/.libs/cartdim_get.o src/mpi/topo/.libs/topo_test.o src/mpi/topo/.libs/dist_gr_create_adj.o src/mpi/topo/.libs/dist_gr_create.o src/mpi/topo/.libs/dist_gr_neighb_count.o src/mpi/topo/.libs/dist_gr_neighb.o src/mpi/topo/.libs/inhb_allgather.o src/mpi/topo/.libs/inhb_allgatherv.o src/mpi/topo/.libs/inhb_alltoall.o src/mpi/topo/.libs/inhb_alltoallv.o src/mpi/topo/.libs/inhb_alltoallw.o src/mpi/topo/.libs/nhb_allgather.o src/mpi/topo/.libs/nhb_allgatherv.o src/mpi/topo/.libs/nhb_alltoall.o src/mpi/topo/.libs/nhb_alltoallv.o src/mpi/topo/.libs/nhb_alltoallw.o src/util/info/.libs/info_create.o src/util/in
> f
>> o/.libs/info_delete.o src/util/info/.libs/info_dup.o src/util/info/.libs/info_free.o src/util/info/.libs/info_get.o src/util/info/.libs/info_getn.o src/util/info/.libs/info_getnth.o src/util/info/.libs/info_getvallen.o src/util/info/.libs/info_set.o src/mutex/.libs/mutex_create.o src/mutex/.libs/mutex_free.o src/mutex/.libs/mutex_lock.o src/mutex/.libs/mutex_unlock.o src/mpi_t/.libs/cat_changed.o src/mpi_t/.libs/cat_get_categories.o src/mpi_t/.libs/cat_get_cvars.o src/mpi_t/.libs/cat_get_info.o src/mpi_t/.libs/cat_get_num.o src/mpi_t/.libs/cat_get_pv.o src/mpi_t/.libs/cvar_get_info.o src/mpi_t/.libs/cvar_get_num.o src/mpi_t/.libs/cvar_handle_alloc.o src/mpi_t/.libs/cvar_handle_free.o src/mpi_t/.libs/cvar_read.o src/mpi_t/.libs/cvar_write.o src/mpi_t/.libs/enum_get_info.o src/mpi_t/.libs/enum_get_item.o src/mpi_t/.libs/mpit_finalize.o src/mpi_t/.libs/mpit_init_thread.o src/mpi_t/.libs/pvar_get_info.o src/mpi_t/.libs/pvar_get_num.o src/mpi_t/.libs/pvar_handle_alloc.o src/mpi_
> t
>> /.libs/pvar_handle_free.o src/mpi_t/.libs/pvar_read.o src/mpi_t/.libs/pvar_readreset.o src/mpi_t/.libs/pvar_reset.o src/mpi_t/.libs/pvar_session_create.o src/mpi_t/.libs/pvar_session_free.o src/mpi_t/.libs/pvar_start.o src/mpi_t/.libs/pvar_stop.o src/mpi_t/.libs/pvar_write.o -Wl,-force_load,src/mpi/romio/.libs/libromio.a -Wl,-force_load,src/mpi/romio/.libs/libpromio.a -L./src/mpl -L./src/openpa/src -L/opt/local/lib /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/work/mpich2-1.5/src/mpl/.libs/libmpl.dylib /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/work/mpich2-1.5/src/openpa/src/.libs/libopa.dylib -lpthread -arch x86_64 -arch x86_64 -Wl,-flat_namespace -install_name /opt/local/lib/libmpich.8.dylib -compatibility_version 9 -current_version 9.1 -Wl,-single_module
>> :info:build clang: error: unable to execute command: Segmentation fault: 11
>> :info:build clang: error: linker command failed due to signal (use -v to see invocation)
>> :info:build make[2]: *** [lib/libmpich.la] Error 254
>> :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/work/mpich2-1.5'
>> :info:build make[1]: *** [all-recursive] Error 1
>> :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/work/mpich2-1.5'
>> :info:build make: *** [all] Error 2
>> :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/work/mpich2-1.5'
>> :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/work/mpich2-1.5" && /usr/bin/make -j2 -w all
>> :info:build Exit code: 2
>> :error:build org.macports.build for port mpich2 returned: command execution failed
>> :debug:build Error code: CHILDSTATUS 20857 2
>> :debug:build Backtrace: command execution failed
>> while executing
>> "system -nice 0 $fullcmdstring"
>> ("eval" body line 1)
>> invoked from within
>> "eval system $notty $nice \$fullcmdstring"
>> invoked from within
>> "command_exec build"
>> (procedure "portbuild::build_main" line 8)
>> invoked from within
>> "$procedure $targetname"
>> :info:build Warning: targets not executed for mpich2: org.macports.activate org.macports.build org.macports.destroot org.macports.install
>> :notice:build Please see the log file for port mpich2 for details:
>> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mpich2/mpich2/main.log
>> ~$
>>
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>
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