[mpich-discuss] PMEMD installation error with MPI

Harikrishna S krishna.s at iitb.ac.in
Thu Jan 12 04:11:51 CST 2012


Dear MPI users,

I am trying to install the AMBER 10 pmemd in parallel version using MPICH2
compiling with ifort in linux platform linux_em64t

I tried to configure the pmemd using the following command

./configure linux_em64t ifort mpich2

but the configuration is failed due to the following error


cd src && make all
make[1]: Entering directory `/home/guest1/amber10/src/pmemd/src'
cc -E    -DPUBFFT      gbl_constants.fpp gbl_constants.f90
cc: gbl_constants.f90: No such file or directory
# 1 "gbl_constants.fpp"
# 1 "<built-in>"
# 1 "<command line>"
# 1 "gbl_constants.fpp"

# 1 "copyright.i" 1

!************************************************************************
!                              AMBER                                   **
!                                                                      **
!                        Copyright (c) 2008                            **
!                Regents of the University of California               **
!                       All Rights Reserved.                           **
!                                                                      **
!  This software provided pursuant to a license agreement containing   **
!  restrictions on its disclosure, duplication, and use. This software **
!  contains confidential and proprietary information, and may not be   **
!  extracted or distributed, in whole or in part, for any purpose      **
!  whatsoever, without the express written permission of the authors.  **
!  This notice, and the associated author list, must be attached to    **
!  all copies, or extracts, of this software. Any additional           **
!  restrictions set forth in the license agreement also apply to this  **
!  software.                                                           **
!************************************************************************

# 2 "gbl_constants.fpp" 2

!*******************************************************************************
!
! Module:  gbl_constants_mod
!
! Description: A central repository of constants that otherwise create
!              circular dependency headaches.
!
!*******************************************************************************

module gbl_constants_mod

  implicit none

! Global constants:

  double precision, parameter   :: PI = 3.1415926535897932384626433832795d0
  double precision, parameter   :: DEG_TO_RAD = PI / 180.d0
  double precision, parameter   :: RAD_TO_DEG = 180.d0 / PI

  ! big_int is largest int that fits in an i8 field, for max nscm, etc.
  integer, parameter    :: big_int = 99999999

  integer, parameter    :: RETIRED_INPUT_OPTION = -10301        ! from
sander8
  integer, parameter    :: UNSUPPORTED_INPUT_OPTION = -10302

  character(11), parameter      :: info_hdr =       '| INFO:    '
  character(11), parameter      :: warn_hdr =       '| WARNING: '
  character(11), parameter      :: error_hdr =      '| ERROR:   '
  character(11), parameter      :: extra_line_hdr = '|          '
  character(8), parameter       :: prog_name =      'PMEMD 10'
  character(41), parameter      :: use_sander = &
                                   '|           Please use sander 10
instead.'

end module gbl_constants_mod
make[1]: *** [gbl_constants.o] Error 1
make[1]: Leaving directory `/home/guest1/amber10/src/pmemd/src'
make: *** [all] Error 2



Please send me suggestions.




-- 
S.Hari Krishna
Junior Research Fellow
Deptt of Chemistry
Indian Institute of Technology Bombay
Powai, Mumbai - 400076



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