[mpich-discuss] Error in MPI_Init

Wed Feb 2 15:37:29 CST 2011

Hello,

When I compile my program with "mpich2-1.2.1" and execute it, I have the following error from "MPI_Init" function.

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thrash:~/source/MeshKit/algs/test> ./ParallelMesh_test 
Internal Error: invalid error code 2087ea0 (Ring Index out of range) in MPIR_Init_thread:394
p0_28347:  p4_error: interrupt SIGSEGV: 11
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The error is coming both for serial and parallel executions.
The executable is compiled with the following options without any problem.
I also attached a configure log file for my program, then please give me any advices to solve it.
Thank you in advance.

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thrash:~/source/MeshKit/algs/test> make ParallelMesh_test
/homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -DHAVE_CONFIG_H -I. -I../..  -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHAVE_IGEOM -I/homes/hongjun/lib/CGM/include -DHAVE_IMESH -I/homes/hongjun/lib/MOAB-new/include  -DHAVE_IREL -I/homes/hongjun/lib/Lasso/include -DHAVE_MOAB -DHAVE_CGM -DUSE_MPI -DSRCDIR=. -I../.. -I../.. -I../../utils -I../../algs -I../../camal   -DVALGRIND  -pipe -g -MT ParallelMesh.o -MD -MP -MF .deps/ParallelMesh.Tpo -c -o ParallelMesh.o ParallelMesh.cpp
mv -f .deps/ParallelMesh.Tpo .deps/ParallelMesh.Po
/bin/sh ../../libtool --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -pipe -g -L/homes/hongjun/lib/CGM/lib  -L/homes/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib -L/home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/lib -L/home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib    -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/szip/szip-2.1/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/hongjun/lib/CGM/lib  -L/homes/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib   -o ParallelMesh_test ParallelMesh.o ../libMKalgs.la    ../../camal/libMKcamal.la -lCMLEdgeMesher -lCMLTet -lCMLSweep -lCMLDelTri -lCMLTri -lCMLSurfMapper -lCMLPave -lCMLSizer  -L/homes/hongjun/lib/Lasso/lib -liRel  -lm -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib    -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/szip/szip-2.1/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/hongjun/lib/CGM/lib  -L/homes/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib -L/homes/hongjun/lib/MOAB-new/lib -L/homes/hongjun/lib/MOAB-new/lib -liMesh -lMOAB -lnetcdf -lhdf5_hl -lhdf5 -lcurl -lhdf5  -lz -lm -L/home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/lib -L/home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -L/homes/hongjun/lib/CGM/lib  -L/homes/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib -lcgm  -lTKSTL -lTKSTEP -lTKSTEP209 -lTKSTEPAttr -lTKSTEPBase -lTKXSBase -lTKIGES -lTKXSBase -lTKLCAF -lTKBinL -lTKHLR -lTKOffset -lTKShHealing -lTKFillet -lTKFeat -lTKBool -lTKBO -lTKPrim -lTKMesh -lTKTopAlgo -lTKGeomAlgo -lTKBRep -lTKGeomBase -lTKG3d -lTKG2d -lTKMath -lTKernel -ldl  -L/homes/hongjun/lib/CGM/lib  -L/homes/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib -L/home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/lib -L/home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -liGeom -lcgm  -lTKSTL -lTKSTEP -lTKSTEP209 -lTKSTEPAttr -lTKSTEPBase -lTKXSBase -lTKIGES -lTKXSBase -lTKLCAF -lTKBinL -lTKHLR -lTKOffset -lTKShHealing -lTKFillet -lTKFeat -lTKBool -lTKBO -lTKPrim -lTKMesh -lTKTopAlgo -lTKGeomAlgo -lTKBRep -lTKGeomBase -lTKG3d -lTKG2d -lTKMath -lTKernel -ldl -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm -lgcc_s -lc -lgcc_s -lm
libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -pipe -g -o ParallelMesh_test ParallelMesh.o  -L/homes/hongjun/lib/CGM/lib -L/homes/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib -L/home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/szip/szip-2.1/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib ../.libs/libMKalgs.a -L/homes/hongjun/lib/Lasso/lib -L/home/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/home/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/szip/szip-2.1/gcc/lib -L/homes/hongjun/lib/MOAB-new/lib -L/usr/lib/mpich/lib/ ../../camal/.libs/libMKcamal.a -L/homes/hongjun/lib/camal.5.1.0-Linux64/lib/Linux64 -lCMLEdgeMesher -lCMLTet -lCMLSweep -lCMLDelTri -lCMLTri -lCMLSurfMapper -lCMLPave -lCMLSizer /homes/hongjun/lib/Lasso/lib/libiRel.a /homes/hongjun/lib/MOAB-new/lib/libiMesh.a /homes/hongjun/lib/MOAB-new/lib/libMOAB.a /home/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib/libnetcdf.so -lnetcdf /usr/lib/libhdf5_hl.so /usr/lib/libcurl.so /usr/lib/libhdf5.so -lz /homes/hongjun/lib/CGM/lib/libiGeom.a /homes/hongjun/lib/CGM/lib/libcgm.a /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKSTL.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKSTEP.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKSTEP209.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKSTEPAttr.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKSTEPBase.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKIGES.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKXSBase.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKBinL.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKLCAF.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKCDF.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKHLR.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKOffset.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKShHealing.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKFillet.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKFeat.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKBool.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKBO.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKPrim.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKMesh.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKTopAlgo.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKGeomAlgo.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKBRep.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKGeomBase.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKG3d.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKG2d.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKMath.so /home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib/libTKernel.so -ldl -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lc -lgcc_s -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/occ/OpenCASCADE6.3.0/gcc/lib
/homes/hongjun/lib/CGM/lib/libiGeom.a(iGeom_CGMA.o): In function `iGeom_load_cub_geometry':
/homes/hongjun/source/CGM/itaps/iGeom_CGMA.cc:6265: warning: the use of `tmpnam' is dangerous, better use `mkstemp'

-----------------------------
Hong-Jun Kim
Post-doc researcher
MCS, Argonne National Laboratory
9700 S. Cass Ave. B240/R2147
Argonne, IL 60439
630-252-4791
hongjun at mcs.anl.gov
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