[mpich-discuss] MPI_IN_PLACE argument

Wed Apr 28 05:09:50 CDT 2010

Hi,

I am trying to sort the bug in the mpi program (see attached). It seems to me, with my very limited knowledge, that everything is related and the whole program needs to be restructed when upgrading from mpich1 to mpich2? If the MPI_Scatter routine flags a bug (The error message is 'memcpy argument memory ranges overlap, dst_=0xafd74f8 src_=0xafd750c len_=16200, internal ABORT'), then it is, as far as I can see, most likely that the other routines, such as, gather(A, B), allGather(A, B), scatterXY(A, B, nk),gatherXY(A, B, nk),allGatherXY(A, B, nk) etc. (see attached), will bring up a similar bug as well. So I don't really know where to start, considering this is a well-established code, run for many years successfully with mpich1 with sensible output.

By using the MPI_IN_Place argument I have to replace the recvbuf, B(nx_1,ny_1,nz_1)?
    call MPI_scatter (sendbuf, nxyz_1, MPI_REAL8, &
                      B, nxyz_1, MPI_REAL8, &
                      idroot, icomm_grid, ierr)
I hope you will be able to help me.
kate

-----Original Message-----
From: mpich-discuss-bounces at mcs.anl.gov [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of Rajeev Thakur
Sent: 27 April 2010 17:32
To: mpich-discuss at mcs.anl.gov; 'Anthony Chan'
Subject: Re: [mpich-discuss] configuration problem

Kate,
     You have to use the mpif.h file that comes with the MPI
implementation, not from some other MPI implementation. With MPICH2, you
have to use MPICH2's include file.

The error with MPI_Scatter indicates there is a bug in your MPI program.
You are using the same buffer as sendbuf and recvbuf, which is not
allowed in MPI. You can use the MPI_IN_PLACE argument instead, as
described in the MPI standard.

I would recommend using MPICH2 instead of trying to get MPICH-1 to work.

Rajeev

> -----Original Message-----
> From: mpich-discuss-bounces at mcs.anl.gov
> [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of
> Steenhauer, Kate
> Sent: Tuesday, April 27, 2010 9:50 AM
> To: Anthony Chan; mpich-discuss at mcs.anl.gov
> Subject: Re: [mpich-discuss] configuration problem
>
> Initially, I tried to run my code with mpich2. The following happens.
>
> We have 1 workstation with 8 processors, the following
> software: Linux Centos, Fortran Intel 11.1.
>
> Mpich2, Intel Fortran and Linux is not working on our pc. It
> does not like the mpif.inc file, it immediately gets into
> problems at the initialisation of the MPI (subroutine MPI_INI).
> mpirun -np 8 RUN02
> > Fatal error in MPI_Comm_size: Invalid communicator, error stack:
> > MPI_Comm_size(111): MPI_Comm_size(comm=0x5b, size=0x7fffce629784)
> > failed
> > MPI_Comm_size(69).: Invalid communicator MPISTART
> > rank 7 in job 2  cops-021026_40378   caused collective
> abort of all ranks
> >  exit status of rank 7: killed by signal 9
>
> Then when I change the mpif.inc file (see attachment) and
> direct it to the mpif.h file that came with the mpich2
> library, it gets passed this problem but then runs into a
> next problem further down the line at MPI_SCATTER, where it
> is trying to distribute data to the different processors. The
> error message is 'memcpy argument memory ranges overlap,
> dst_=0xafd74f8 src_=0xafd750c len_=16200, internal ABORT'.
>
> There is something in the parametresiation within the mpi
> that is possibly different then when the code is successfully
> run on another cluster (this cluster uses Redhat, various
> mpich versions, e.g. mpich-1.2.5..12, and various versions of
> Intel FORTRAN compiler (ifort), e.g. 7, 9 and 12).
>
> I have attached the mpif.inc file.
>
> Please let me know if you have any ideas?
>
> Thanks
>
> Kate
>
> -----Original Message-----
> From: mpich-discuss-bounces at mcs.anl.gov
> [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of
> chan at mcs.anl.gov
> Sent: 27 April 2010 15:42
> To: mpich-discuss at mcs.anl.gov
> Subject: Re: [mpich-discuss] configuration problem
>
>
> Is there any reason you can't use mpich2 ?  The latest stable
> release of mpich2 is 1.2.1p1.
>
> mpich-1 is no longer officially supported.  Latest fortran compilers
> are much better supported in mpich2.
>
> A.Chan
>
> ----- "Kate Steenhauer" <k.steenhauer at abdn.ac.uk> wrote:
>
> > Hello,
> >
> > We are trying to install mpich-1.2.7p1. I downloaded and
> unzipped this
> > version from http://www.mcs.anl.gov/research/projects/mpi/mpich1/
> >
> > We have 1 workstation with 8 processors, and the following software:
> > Linux Centos and Fortran Intel 11.1.
> >
> > When the documentation guidelines with regard to configuring and
> > making are followed (see the files attached) it all seems ok, e.g.
> > mpif90 is generated. However, when a simple parallel job is
> tested we
> > get the following error:
> >
> > mpif90 -o testA MPITEST.f90
> > No Fortran 90 compiler specified when mpif90 was created, or
> > configuration file does not specify a compiler.
> >
> > Is there a specific prefix I need to give with an ifort fortran
> > compiler when I configure mpich?
> >
> > I would like to thank you in advance for your help. Please
> let me know
> > if you need any further details.
> >
> > Regards
> >
> > Kate Steenhauer
> >
> > University of Aberdeen
> >
> > 01224-272806
> >
> >
> >
> >
> >
> > The University of Aberdeen is a charity registered in Scotland, No
> > SC013683.
> >
> > _______________________________________________
> > mpich-discuss mailing list
> > mpich-discuss at mcs.anl.gov
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> _______________________________________________
> mpich-discuss mailing list
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>
>
> The University of Aberdeen is a charity registered in
> Scotland, No SC013683.
>

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