[mpich-discuss] relocation R_X86_64_32S against `a local symbol' can not be used when making a shared object; recompile with -fPIC
Mário Costa
mario.silva.costa at gmail.com
Mon Oct 19 10:28:28 CDT 2009
>From what I can see you are using dynamic compiling in your
application, and I would guess that your mpich compilers have a
default configuration to use static liking with the mpich libraries,
you can check that with the mpichversion or similar command in the dir
/opt/mpich/gnu/bin/ .
If your application can compile statically try changing
OPT=-O3 -fPIC -D__IC_SMS to
OPT=-O3 -static -D__IC_SMS
and
LRT_LDFLAGS=-rdynamic $(OPT) to
LRT_LDFLAGS= $(OPT)
Hope this helps
On Mon, Oct 19, 2009 at 2:58 PM, Luís Miranda <luistm at gmail.com> wrote:
> This is the makefile i use:
>
> ARCH = $(shell uname)
> LEX=flex
> YACC=bison -d -v -t
> LEXLIB = -lfl
> DLLLIB = -ldl
> ifeq ($(ARCH),Darwin)
> DLLLIB =
> endif
> ifeq ($(ARCH),OpenBSD)
> DLLLIB =
> endif
>
> EXRINCLUDE=-I/export3/home/lmiranda/.usr/include/OpenEXR
> EXRLIBDIR=-L/export3/home/lmiranda/.usr/lib
>
> #EXRINCLUDE=-I/export3/home/lmiranda/Sources/par-pbrt/src/OpenEXR/include
> #EXRLIBDIR=-L/export3/home/lmiranda/Sources/par-pbrt/src/OpenEXR/liblinux
>
>
>
> #EXRLIBS=$(EXRLIBDIR) -Bstatic -lIex -lIlmImf -lImath -lIex -lHalf -Bdynamic
> -lz
>
>
> ifeq ($(ARCH),Linux)
> EXRLIBS += -lpthread
> endif
>
>
> #CC=gcc
> #CXX=g++
> #CC=/opt/mpich-mx/bin/mpicc
> #CXX=/opt/mpich-mx/bin/mpicxx
> #CC=/opt/mpich/intel/bin/mpiCC
> #CXX=/opt/mpich/intel/bin/mpicxx
> CC=/opt/mpich/gnu/bin/mpicc
> CXX=/opt/mpich/gnu/bin/mpicxx
>
> #CC=/export3/home/lmiranda/.opt/openmpi/bin/mpicc
> #CXX=/export3/home/lmiranda/.opt/openmpi/bin/mpicxx
>
> #CC=/export3/home/lmiranda/.opt/mpich2/bin/mpicc
> #CXX=/export3/home/lmiranda/.opt/mpich2/bin/mpicxx
>
>
> #CC= /opt/mpich/myrinet/gnu/bin/mpicc
> #CXX= /opt/mpich/myrinet/gnu/bin/mpicxx
> LD=$(CXX) $(OPT)
>
>
> #v0.4######################################
> #OPT=-O3 -fPIC
> OPT=-O3 -fPIC -D__IC_SMS
> #OPT=-O3 -fPIC -D__AU_L
> #OPT=-O3 -fPIC -pthread -D__AU_L_2T
> #OPT=-O3 -fPIC -pthread -D__AB_L_2T
> #OPT=-O3 -fPIC -D__AB_L
> #OPT=-O3 -fPIC -D__OTA
>
> #v0.2.1 & v0.3######################################
> #OPT=-O3 -fPIC -D__IC_SMS
> #OPT=-O3 -fPIC -pthread -D__ALC
> #OPT=-O3 -fPIC -D__AU
> #OPT=-O3 -fPIC -D__AU-L
>
> #OPT=-O3 -fPIC -D__AB
> #OPT=-O3 -fPIC -D__AB2
> #OPT=-O3 -fPIC -D__AB-L
>
>
> #OPT=-O3 -fPIC -D__AL
> #OPT=-O3 -fPIC -D__AL2
> #OPT=-O3 -fPIC -D__ALL
>
> #v0.2##############################################
> #OPT=-O3 -fPIC -D__AB1
> #OPT=-O3 -fPIC -lm -D__AB2
> #OPT=-O3 -fPIC -lm -D__AU
> #OPT=-O3 -fPIC -lm -D__AU2
> #OPT=-O3 -fPIC -lm -D__LR
>
> #ORIGINAL#########################################
> #OPT=-O3 -fPIC
> #OPT=-O3
> # OPT=-O2 -msse -mfpmath=sse
> INCLUDE=-I. -Icore $(EXRINCLUDE)
> WARN=-Wall
> CWD=$(shell pwd)
> CXXFLAGS=$(OPT) $(INCLUDE) $(WARN)
> CCFLAGS=$(CXXFLAGS)
> LIBS=$(LEXLIB) $(DLLLIB) $(EXRLIBDIR) $(EXRLIBS) -lm
>
> SHARED_LDFLAGS = -shared
> LRT_LDFLAGS=-rdynamic $(OPT)
> #PBRTPRELINK=-Wl,--export-dynamic -Wl,-whole-archive
> #PBRTPOSTLINK=-Wl,-no-whole-archive
>
> ifeq ($(ARCH), Darwin)
> OS_VERSION = $(shell uname -r)
> SHARED_LDFLAGS = -flat_namespace -undefined suppress -bundle -noprebind
> LRT_LDFLAGS=$(OPT) # -L/sw/lib
> INCLUDE += -I/sw/include
> WARN += -Wno-long-double
> endif
>
> ACCELERATORS = grid kdtree
> CAMERAS = environment orthographic perspective
> CORE = api camera color dynload exrio film geometry light material
> mc \
> paramset parser primitive reflection sampling scene shape \
> texture timer transform transport util volume pbrtparse
> pbrtlex
> FILM = image
> FILTERS = box gaussian mitchell sinc triangle
> INTEGRATORS = directlighting emission irradiancecache \
> path photonmap single whitted igi debug exphotonmap
> LIGHTS = area distant goniometric infinite point projection spot
> infinitesample
> MATERIALS = bluepaint brushedmetal clay felt \
> glass matte mirror plastic primer \
> shinymetal skin substrate translucent uber
> SAMPLERS = bestcandidate lowdiscrepancy random stratified
> SHAPES = cone cylinder disk heightfield hyperboloid loopsubdiv nurbs \
> paraboloid sphere trianglemesh
> TEXTURES = bilerp checkerboard constant dots fbm imagemap marble mix \
> scale uv windy wrinkled
> TONEMAPS = contrast highcontrast maxwhite nonlinear
> VOLUMES = exponential homogeneous volumegrid
>
> RENDERER = pbrt
>
>
>
> RENDERER_OBJS := $(addprefix objs/, $(RENDERER:=.o) )
> CORE_OBJS := $(addprefix objs/, $(CORE:=.o) )
> CORE_LIB := core/libpbrt.a
>
> SHAPES_DSOS := $(addprefix bin/, $(SHAPES:=.so))
> MATERIALS_DSOS := $(addprefix bin/, $(MATERIALS:=.so))
> LIGHTS_DSOS := $(addprefix bin/, $(LIGHTS:=.so))
> INTEGRATORS_DSOS := $(addprefix bin/, $(INTEGRATORS:=.so))
> VOLUMES_DSOS := $(addprefix bin/, $(VOLUMES:=.so))
> TEXTURES_DSOS := $(addprefix bin/, $(TEXTURES:=.so))
> ACCELERATORS_DSOS := $(addprefix bin/, $(ACCELERATORS:=.so))
> CAMERAS_DSOS := $(addprefix bin/, $(CAMERAS:=.so))
> FILTERS_DSOS := $(addprefix bin/, $(FILTERS:=.so))
> FILM_DSOS := $(addprefix bin/, $(FILM:=.so))
> TONEMAPS_DSOS := $(addprefix bin/, $(TONEMAPS:=.so))
> SAMPLERS_DSOS := $(addprefix bin/, $(SAMPLERS:=.so))
>
> SHAPES_OBJS := $(addprefix objs/, $(SHAPES:=.o))
> MATERIALS_OBJS := $(addprefix objs/, $(MATERIALS:=.o))
> LIGHTS_OBJS := $(addprefix objs/, $(LIGHTS:=.o))
> INTEGRATORS_OBJS := $(addprefix objs/, $(INTEGRATORS:=.o))
> VOLUMES_OBJS := $(addprefix objs/, $(VOLUMES:=.o))
> TEXTURES_OBJS := $(addprefix objs/, $(TEXTURES:=.o))
> ACCELERATORS_OBJS := $(addprefix objs/, $(ACCELERATORS:=.o))
> CAMERAS_OBJS := $(addprefix objs/, $(CAMERAS:=.o))
> FILTERS_OBJS := $(addprefix objs/, $(FILTERS:=.o))
> FILM_OBJS := $(addprefix objs/, $(FILM:=.o))
> TONEMAPS_OBJS := $(addprefix objs/, $(TONEMAPS:=.o))
> SAMPLERS_OBJS := $(addprefix objs/, $(SAMPLERS:=.o))
>
> RENDERER_BINARY = bin/pbrt
>
> CORE_HEADERFILES = api.h camera.h color.h dynload.h film.h geometry.h \
> kdtree.h light.h pbrt.h material.h mc.h mipmap.h octree.h
> \
> paramset.h primitive.h reflection.h sampling.h scene.h \
> shape.h texture.h timer.h tonemap.h transform.h
> transport.h \
> volume.h
>
> CORE_HEADERS := $(addprefix core/, $(CORE_HEADERFILES) )
>
> .SECONDARY: $(SHAPES_OBJS) $(MATERIALS_OBJS) $(LIGHTS_OBJS)
> $(INTEGRATORS_OBJS) \
> $(VOLUMES_OBJS) $(ACCELERATORS_OBJS) $(CAMERAS_OBJS)
> $(FILTERS_OBJS) \
> $(FILM_OBJS) $(TONEMAPS_OBJS) $(SAMPLERS_OBJS) $(TEXTURES_OBJS)
>
> .PHONY: tools exrcheck
>
> default: $(CORE_LIB) $(RENDERER_BINARY) $(INTEGRATORS_DSOS) $(VOLUMES_DSOS)
> $(FILM_DSOS) $(SHAPES_DSOS) $(MATERIALS_DSOS) $(LIGHTS_DSOS)
> $(ACCELERATORS_DSOS) $(CAMERAS_DSOS) $(SAMPLERS_DSOS) $(FILTERS_DSOS)
> $(TONEMAPS_DSOS) $(TEXTURES_DSOS) #tools
>
> tools: $(CORE_LIB)
> (cd tools && $(MAKE))
>
> $(CORE_LIB): $(CORE_OBJS)
> @echo "Building the core rendering library (libpbrt.a)"
> @ar rcs $(CORE_LIB) $(CORE_OBJS)
>
> bin/%.so: objs/%.o
> @$(LD) $(SHARED_LDFLAGS) $^ -o $@
>
> objs/%.o: renderer/%.cpp $(CORE_HEADERS)
> @echo "Building the rendering binary (pbrt)"
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: core/%.cpp $(CORE_HEADERS)
> @echo "Compiling $<"
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: core/%.c $(CORE_HEADERS)
> @echo "Compiling $<"
> @$(CC) $(CCFLAGS) -o $@ -c $<
>
> objs/%.o: shapes/%.cpp $(CORE_HEADERS)
> @echo "Building Shape Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: integrators/%.cpp $(CORE_HEADERS)
> @echo "Building Integrator Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: volumes/%.cpp $(CORE_HEADERS)
> @echo "Building Volume Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: textures/%.cpp $(CORE_HEADERS)
> @echo "Building Texture Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: materials/%.cpp $(CORE_HEADERS)
> @echo "Building Material Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: lights/%.cpp $(CORE_HEADERS)
> @echo "Building Light Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: accelerators/%.cpp $(CORE_HEADERS)
> @echo "Building Accelerator Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: cameras/%.cpp $(CORE_HEADERS)
> @echo "Building Camera Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: filters/%.cpp $(CORE_HEADERS)
> @echo "Building Filter Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: tonemaps/%.cpp $(CORE_HEADERS)
> @echo "Building Tone Map Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: film/%.cpp $(CORE_HEADERS)
> @echo "Building Film Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> objs/%.o: samplers/%.cpp $(CORE_HEADERS)
> @echo "Building Sampler Plugin \"$*\""
> @$(CXX) $(CXXFLAGS) -o $@ -c $<
>
> core/pbrtlex.cpp: core/pbrtlex.l
> @echo "Lex'ing pbrtlex.l"
> @$(LEX) -o$@ core/pbrtlex.l
>
> core/pbrtparse.h core/pbrtparse.cpp: core/pbrtparse.y
> @echo "YACC'ing pbrtparse.y"
> @$(YACC) -o $@ core/pbrtparse.y
> @if [ -e core/pbrtparse.cpp.h ]; then /bin/mv core/pbrtparse.cpp.h
> core/pbrtparse.h; fi
> @if [ -e core/pbrtparse.hpp ]; then /bin/mv core/pbrtparse.hpp
> core/pbrtparse.h; fi
>
> $(RENDERER_BINARY): $(RENDERER_OBJS) $(CORE_LIB)
> @echo "Linking $@"
> @$(CXX) $(LRT_LDFLAGS) -o $@ $(RENDERER_OBJS) $(PBRTPRELINK)
> $(CORE_OBJS) $(PBRTPOSTLINK) $(LIBS)
>
> clean:
> rm -f */*.o */*.so */*.a bin/pbrt core/pbrtlex.[ch]*
> core/pbrtparse.[ch]*
> (cd tools && $(MAKE) clean)
>
> objs/exrio.o: exrcheck
>
> exrcheck:
> @echo -n Checking for EXR installation...
> @$(CXX) $(CXXFLAGS) -o exrcheck exrcheck.cpp $(LIBS) || \
> (cat exrinstall.txt; exit 1)
>
>
>
>
>
>
> 2009/10/19 Mário Costa <mario.silva.costa at gmail.com>
>>
>> Maybe if you can post the build script or part of it where you
>> compile, and have the flag and library definition e could try to
>> identify what might be wrong...
>>
>> Regards,
>> Mario
>>
>> On Mon, Oct 19, 2009 at 2:40 PM, Luís Miranda <luistm at gmail.com> wrote:
>> > Well, thanks for the suggestion, but the problem is still happening.
>> >
>> >
>> > Thanks
>> >
>> > 2009/10/19 Mário Costa <mario.silva.costa at gmail.com>
>> >>
>> >> Hi,
>> >>
>> >> The problem is that the irradiancecache.so library is dynamic, and you
>> >> are using mpich static library version libpmpich++.a.
>> >>
>> >> Either you are compiling with -static with gnu, or you are specifying
>> >> the static library libpmpich++.a.
>> >>
>> >> If that is the case remove the -static flag from gnu compiler in the
>> >> byuild script, or use -lmpich++ instead of the library ...
>> >>
>> >> Hope this helps,
>> >> Regards,
>> >> Mário
>> >>
>> >> On Mon, Oct 19, 2009 at 11:56 AM, Luís Miranda <luistm at gmail.com>
>> >> wrote:
>> >> > Hi
>> >> >
>> >> > I'm having this problem, when i try to compile my software in a
>> >> > rocks4.2
>> >> > cluster.
>> >> >
>> >> > /usr/bin/ld: /opt/mpich/myrinet/gnu/lib/libpmpich++.a(intercepts.o):
>> >> > relocation R_X86_64_32S against `a local symbol' can not be used when
>> >> > making
>> >> > a shared object; recompile with -fPIC
>> >> > /opt/mpich/myrinet/gnu/lib/libpmpich++.a: could not read symbols: Bad
>> >> > value
>> >> > collect2: ld returned 1 exit status
>> >> > make: *** [bin/irradiancecache.so] Error 1
>> >> >
>> >> > A solution to the problem, isto to compile the mpich with
>> >> > CFLAGS=-fPIC,
>> >> > but
>> >> > i can't do this, becouse i'm not the cluster's admin.
>> >> > Anyone knows any other workaround to the problem?
>> >> >
>> >> > Thanks
>> >> >
>> >> > _______________________________________________
>> >> > mpich-discuss mailing list
>> >> > mpich-discuss at mcs.anl.gov
>> >> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>> >> >
>> >> >
>> >>
>> >>
>> >>
>> >> --
>> >> Mário Costa
>> >>
>> >> Laboratório Nacional de Engenharia Civil
>> >> LNEC.CTI.NTIEC
>> >> Avenida do Brasil 101
>> >> 1700-066 Lisboa, Portugal
>> >> Tel : ++351 21 844 3911
>> >> _______________________________________________
>> >> mpich-discuss mailing list
>> >> mpich-discuss at mcs.anl.gov
>> >> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>> >
>> >
>> > _______________________________________________
>> > mpich-discuss mailing list
>> > mpich-discuss at mcs.anl.gov
>> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>> >
>> >
>> _______________________________________________
>> mpich-discuss mailing list
>> mpich-discuss at mcs.anl.gov
>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
>
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