[mpich-discuss] Cannot build mpich2-1.0.8p1 (nemesis) with PGI 8.0-4 on Linux x86_64

[Darius Buntinas]

Gus,

I just wanted to point out that you have "export CXX=pgcpp" in your
configure script.  This should be "export CXX=pgCC", pgcpp is the c
pre-preprocessor, pcCC is the c++ compiler.  (IMHO, cpp is an
unfortunate name for the pre-processor.)

I'm not sure how related this is to what you're seeing.

-d

On 03/30/2009 06:12 PM, Gus Correa wrote:
> Dear MPICH experts
> 
> I tried to build the latest mpich2-1.0.8p1,
> with the nemesis communication device,
> using the PGI 8.0-4 compilers (pgcc, pgcpp, and pgf90)
> on a Linux x86_64 computer, but it failed.
> 
> The error message, which happens during the make phase, is:
> 
> make[7]: Entering directory
> `/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/build_pgi-8.0-4/src/mpid/ch3/channels/nemesis/nemesis/src'
> 
> pgcc -DHAVE_CONFIG_H -I.
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/ch3/channels/nemesis/nemesis/src
> -I. -I../include
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/ch3/channels/nemesis/nemesis/include
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/include
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/build_pgi-8.0-4/src/include
> -DNDEBUG -O2 -DUSE_PROCESS_LOCKS
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/build_pgi-8.0-4/src/mpid/ch3/include
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/ch3/include
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/build_pgi-8.0-4/src/mpid/common/datatype
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/common/datatype
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/build_pgi-8.0-4/src/mpid/common/locks
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/common/locks
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/build_pgi-8.0-4/src/mpid/ch3/channels/nemesis/include
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/ch3/channels/nemesis/include
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/build_pgi-8.0-4/src/mpid/common/locks
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/common/locks
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/ch3/channels/nemesis/nemesis/include
> -I/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor
> -c
> /home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/ch3/channels/nemesis/nemesis/src/mpid_nem_alloc.c
> 
> PGC-F-0249-#error --  No swap function defined for this architecture
> (/home/swinst/mpich2/1.0.8p1/mpich2-1.0.8p1/src/mpid/ch3/channels/nemesis/nemesis/include/mpid_nem_atomics.h:
> 31)
> PGC/x86-64 Linux 8.0-4: compilation aborted
> 
> **
> 
> Apparently all three pre-processor macros
> HAVE_GCC_AND_PENTIUM_ASM,
> HAVE_GCC_AND_X86_64_ASM, and
> HAVE_GCC_AND_IA64_ASM
> on the mpid_nem_atomics.h file are not defined.
> Since I am working on an x86_64 Linux computer with gcc,
> I thought configure would somehow define HAVE_GCC_AND_X86_64_ASM.
> Or not?
> 
> **
> 
> More information about the computer, which is the
> head of a cluster with similar compute nodes:
> 
> 1. AMD Opteron Shanghai (dual socket, quad core)
> 2. Linux kernel 2.6.18-92.1.22.el5 #1 SMP (CentOS 5.2)
> 3. PGI 8.0.4
> 4. Gnu/GCC 4.1.2
> 
> **
> 
> My configure script:
> 
> #! /bin/sh
> export MYINSTALLDIR=/some/directory/
> export CC=pgcc
> export CXX=pgcpp
> export F77=pgf90
> export F90=${F77}
> # Note: Optimization flags for AMD Opteron "Shanghai"
> export MPICH2LIB_CFLAGS='-tp shanghai-64 -fast -Mfprelaxed -static'
> export MPICH2LIB_CXXFLAGS=${MPICH2LIB_CFLAGS}
> export MPICH2LIB_FFLAGS=${MPICH2LIB_CFLAGS}
> export MPICH2LIB_F90FLAGS=${MPICH2LIB_CFLAGS}
> ####################################################
> ../configure \
> --prefix=${MYINSTALLDIR} \
> --with-device=ch3:nemesis \
> --enable-fast \
> 2>&1 | tee configure_${build_id}.log
> 
> **
> 
> BTW, I built mpich2-1.0.8p1 with nemesis on the same computer
> using Gnu compilers (gcc, g++, gfortran),
> and also using Intel compilers (icc, icpc, ifort).
> However, we also need the PGI build of MPICH2.
> 
> I appreciate any help.
> 
> Gus Correa
> ---------------------------------------------------------------------
> Gustavo Correa
> Lamont-Doherty Earth Observatory - Columbia University
> Palisades, NY, 10964-8000 - USA
> ---------------------------------------------------------------------