[MOAB-dev] build MOAB error

[Xu Wu]

Greetings,

I tried to build MOAB on a Ubuntu machine but I saw the following error:
I am using Ubuntu 14.04, with mpich-3.0.4, HDF5-1.8.14 and netcdf-4.3.2.
Previously I used successfully build MOAB with same configuration 
commands (Only difference is that I used openMPI before), but I do not 
know why doesn't it work this time.

     ../configure \
--prefix=/home/xu/research/softwares/Projects_warthog/warthog/moab/install \
--with-hdf5=/home/xu/research/softwares/Projects_warthog/Dependencies/hdf5-1.8.14 
\
--with-netcdf=/home/xu/research/softwares/Projects_warthog/Dependencies/netcdf-4.3.2 
\
     --with-mpi  \
     --enable-shared CC=mpicc CXX=mpicxx FC=mpif90 F77=mpif77




I also attached the configuration log. (There are a few error messages, 
but I saw same messages before and I could still build MOAB, so I think 
they should not be the reason).

Thank you.


-Xu


libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra 
-Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow 
-Wunused-parameter -O2 -DNDEBUG -o .libs/hexmodops makeops.o 
-L/home/xu/research/softwares/Projects_warthog/Dependencies/netcdf-4.3.2/lib 
/home/xu/research/softwares/Projects_warthog/Dependencies/netcdf-4.3.2/lib/libnetcdf.so 
-L/home/xu/research/softwares/Projects_warthog/Dependencies/hdf5-1.8.14/lib 
../src/.libs/libMOAB.so ../itaps/imesh/.libs/libiMesh.so -lz -ldl -lm 
-Wl,-rpath 
-Wl,/home/xu/research/softwares/Projects_warthog/Dependencies/netcdf-4.3.2/lib 
-Wl,-rpath 
-Wl,/home/xu/research/softwares/Projects_warthog/warthog/moab/install/lib
../src/.libs/libMOAB.so: undefined reference to `H5Pcreate'
../src/.libs/libMOAB.so: undefined reference to `H5Tget_size'
../src/.libs/libMOAB.so: undefined reference to `H5Fopen'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_INT_g'
../src/.libs/libMOAB.so: undefined reference to `H5check_version'
../src/.libs/libMOAB.so: undefined reference to `H5Tconvert'
../src/.libs/libMOAB.so: undefined reference to `H5Awrite'
../src/.libs/libMOAB.so: undefined reference to `H5Aclose'
../src/.libs/libMOAB.so: undefined reference to `H5Tset_tag'
../src/.libs/libMOAB.so: undefined reference to `H5Gunlink'
../src/.libs/libMOAB.so: undefined reference to `H5Acreate2'
../src/.libs/libMOAB.so: undefined reference to `H5Dget_space'
../src/.libs/libMOAB.so: undefined reference to `H5Gcreate2'
../src/.libs/libMOAB.so: undefined reference to `H5Tenum_nameof'
../src/.libs/libMOAB.so: undefined reference to `H5Aiterate2'
../src/.libs/libMOAB.so: undefined reference to `H5Eget_auto2'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_LLONG_g'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_B16_g'
../src/.libs/libMOAB.so: undefined reference to `H5Tenum_insert'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_SHORT_g'
../src/.libs/libMOAB.so: undefined reference to `H5Dread'
../src/.libs/libMOAB.so: undefined reference to `H5Tarray_create2'
../src/.libs/libMOAB.so: undefined reference to `H5Dfill'
../src/.libs/libMOAB.so: undefined reference to `H5Fget_obj_ids'
../src/.libs/libMOAB.so: undefined reference to `H5Gget_objname_by_idx'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_UCHAR_g'
../src/.libs/libMOAB.so: undefined reference to `H5Tequal'
../src/.libs/libMOAB.so: undefined reference to `H5Tcommit2'
../src/.libs/libMOAB.so: undefined reference to `H5Sget_simple_extent_ndims'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_HSSIZE_g'
../src/.libs/libMOAB.so: undefined reference to `H5Tset_size'
../src/.libs/libMOAB.so: undefined reference to `H5Fis_hdf5'
../src/.libs/libMOAB.so: undefined reference to `H5Topen2'
../src/.libs/libMOAB.so: undefined reference to `H5Fget_obj_count'
../src/.libs/libMOAB.so: undefined reference to `H5Aget_type'
../src/.libs/libMOAB.so: undefined reference to `H5Fcreate'
../src/.libs/libMOAB.so: undefined reference to `H5Pclose'
../src/.libs/libMOAB.so: undefined reference to `H5Screate_simple'
../src/.libs/libMOAB.so: undefined reference to `H5Sselect_hyperslab'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_DOUBLE_g'
../src/.libs/libMOAB.so: undefined reference to `H5Sget_simple_extent_dims'
../src/.libs/libMOAB.so: undefined reference to `H5P_CLS_DATASET_XFER_ID_g'
../src/.libs/libMOAB.so: undefined reference to `H5T_C_S1_g'
../src/.libs/libMOAB.so: undefined reference to `H5Dopen2'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_B32_g'
../src/.libs/libMOAB.so: undefined reference to `H5Tcopy'
../src/.libs/libMOAB.so: undefined reference to `H5Dget_type'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_ULLONG_g'
../src/.libs/libMOAB.so: undefined reference to `H5Tget_sign'
../src/.libs/libMOAB.so: undefined reference to `H5Screate'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_UINT_g'
../src/.libs/libMOAB.so: undefined reference to `H5Giterate'
../src/.libs/libMOAB.so: undefined reference to `H5Tget_super'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_FLOAT_g'
../src/.libs/libMOAB.so: undefined reference to `H5Eset_auto2'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_LONG_g'
../src/.libs/libMOAB.so: undefined reference to `H5Aopen_name'
../src/.libs/libMOAB.so: undefined reference to `H5Tget_array_dims2'
../src/.libs/libMOAB.so: undefined reference to `H5Aread'
../src/.libs/libMOAB.so: undefined reference to `H5Pset_dxpl_mpio'
../src/.libs/libMOAB.so: undefined reference to `H5Iget_type'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_LDOUBLE_g'
../src/.libs/libMOAB.so: undefined reference to `H5Sclose'
../src/.libs/libMOAB.so: undefined reference to `H5Gset_comment'
../src/.libs/libMOAB.so: undefined reference to `H5open'
../src/.libs/libMOAB.so: undefined reference to `H5Tclose'
../src/.libs/libMOAB.so: undefined reference to `H5Sselect_none'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_SCHAR_g'
../src/.libs/libMOAB.so: undefined reference to `H5Gopen2'
../src/.libs/libMOAB.so: undefined reference to `H5Tenum_create'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_B64_g'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_USHORT_g'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_B8_g'
../src/.libs/libMOAB.so: undefined reference to `H5Dwrite'
../src/.libs/libMOAB.so: undefined reference to `H5Tset_precision'
../src/.libs/libMOAB.so: undefined reference to `H5Dclose'
../src/.libs/libMOAB.so: undefined reference to `H5Tget_class'
../src/.libs/libMOAB.so: undefined reference to `H5Tcreate'
../src/.libs/libMOAB.so: undefined reference to `H5P_CLS_FILE_ACCESS_ID_g'
../src/.libs/libMOAB.so: undefined reference to `H5T_NATIVE_ULONG_g'
../src/.libs/libMOAB.so: undefined reference to `H5Fclose'
../src/.libs/libMOAB.so: undefined reference to `H5Gget_num_objs'
../src/.libs/libMOAB.so: undefined reference to `H5Tget_precision'
../src/.libs/libMOAB.so: undefined reference to `H5Gclose'
../src/.libs/libMOAB.so: undefined reference to `H5Dcreate2'
../src/.libs/libMOAB.so: undefined reference to `H5Pset_fapl_mpio'
../src/.libs/libMOAB.so: undefined reference to `H5Scopy'
collect2: error: ld returned 1 exit status
make[2]: *** [hexmodops] Error 1
make[2]: Leaving directory 
`/home/xu/research/softwares/Projects_warthog/warthog/moab/build/tools'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory 
`/home/xu/research/softwares/Projects_warthog/warthog/moab/build/tools'
make: *** [all-recursive] Error 1

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