[MOAB-dev] building MOAB with CGNS support

[Kanaev A.A.]

Hello Vijay,
After building with --with-cgns=/usr/local/lib mbconvert - l shows same list of formats and there's no CGNS in it
When i do mbconvert Mesh_1.cgns Mesh_1.h5m i got the message:
HDF5-DIAG: Error detected in HDF5 (1.8.11) MPI-process 0:
  #000: H5G.c line 463 in H5Gopen2(): unable to open group
    major: Symbol table
    minor: Can't open object
  #001: H5Gint.c line 320 in H5G__open_name(): group not found
    major: Symbol table
    minor: Object not found
  #002: H5Gloc.c line 430 in H5G_loc_find(): can't find object
    major: Symbol table
    minor: Object not found
  #003: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #004: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Callback failed
  #005: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'tstt' doesn't exist
    major: Symbol table
    minor: Object not found
Failed to load "Mesh_1.cgns".
Error code: MB_INDEX_OUT_OF_RANGE (1)
Error message: Mesh_1.cgns: Trouble reading vertices

Thanks,
Anton
________________________________________
From: Vijay S. Mahadevan [vijay.m at gmail.com]
Sent: Tuesday, September 02, 2014 12:24 AM
To: Kanaev A.A.
Cc: moab-dev at mcs.anl.gov
Subject: Re: [MOAB-dev] building MOAB with CGNS support

Make sure the LD_LIBRARY_PATH contains the cgns installation library
path (/usr/local/lib ?). To verify, you can run "ldd mbconvert" and
see if any of the dynamic libraries are not resolved.

Vijay

On Mon, Sep 1, 2014 at 2:06 PM, Kanaev A.A. <kanaev at ibrae.ac.ru> wrote:
> Hello MOAB-dev,
>
> Here's how i configure Makefile:
> ...
> ./configure --prefix=${FATHOM_DIR}/moab/build --with-mpi=${MPI2_PREFIX} --without-netcdf --with-hdf5=${HDF5_PREFIX} --with-zlib=${ZLIB_PREFIX} --with-szlib=${SZIP_PREFIX} --with-zoltan=${zoltan_PREFIX} --with-parmetis=${parmetis_PREFIX} --with-cgns=${FATHOM_DIR}/cgnslib_3.2.1/src --enable-igeom  --enable-docs --with-doxygen=/home/anton/doxygen/bin --enable-static 2>&1 | tee configure.log
>
> configure goes ok:
> ...
> checking if CGNS support is enabled... yes
> checking cgnslib.h usability... yes
> checking cgnslib.h presence... yes
> checking for cgnslib.h... yes
> checking for cg_open in -lcgns... no
> checking for cg_open in -lcgns... yes
> ...
>
>
> After build is done when i run mbconvert i got the following message:
>
> mbconvert: error while loading shared libraries: libcgns.so.3.2: cannot open shared object file: No such file or directory
>
> ${FATHOM_DIR}/cgnslib_3.2.1/src contains libcgns.so.3.2, it is also installed to /usr/local/lib
>
> What can be wrong?
>
> Thanks,
> Anton