[MOAB-dev] Build failed in Jenkins: moab32par #398
jenkins-ci at mcs.anl.gov
jenkins-ci at mcs.anl.gov
Tue Apr 22 00:15:27 CDT 2014
See <https://jenkins-ci.mcs.anl.gov/job/moab32par/398/changes>
Changes:
[wuda] Updated NC writer and its unit test. Parallel write should work now for structured mesh (e.g. CAM_EUL).
[wuda] Added two test cases to write_nc for CAM-FV. Fixed a few NC writer bugs to make them pass.
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C: mpicc -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set
C++: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set
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mv -f .deps/WriteNC.Tpo .deps/WriteNC.Plo
/bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/homes/fathom/lib32/jenkins/cgm/include -DCGM -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT NCHelper.lo -MD -MP -MF .deps/NCHelper.Tpo -c -o NCHelper.lo NCHelper.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/homes/fathom/lib32/jenkins/cgm/include -DCGM -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT NCHelper.lo -MD -MP -MF .deps/NCHelper.Tpo -c NCHelper.cpp -o NCHelper.o
mv -f .deps/NCHelper.Tpo .deps/NCHelper.Plo
/bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/homes/fathom/lib32/jenkins/cgm/include -DCGM -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT NCWriteHelper.lo -MD -MP -MF .deps/NCWriteHelper.Tpo -c -o NCWriteHelper.lo NCWriteHelper.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I.. -I./.. -I./../parallel -I./mhdf/include -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/homes/fathom/lib32/jenkins/cgm/include -DCGM -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT NCWriteHelper.lo -MD -MP -MF .deps/NCWriteHelper.Tpo -c NCWriteHelper.cpp -o NCWriteHelper.o
NCWriteHelper.cpp: In member function 'virtual moab::ErrorCode moab::ScdNCWriteHelper::write_values(std::vector<std::basic_string<char> >&)':
NCWriteHelper.cpp:567:45: error: 'nc_begin_indep_data' was not declared in this scope
NCWriteHelper.cpp:613:43: error: 'nc_end_indep_data' was not declared in this scope
make[5]: *** [NCWriteHelper.lo] Error 1
make[5]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/src/io'>
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/src/io'>
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/src'>
make[2]: *** [all] Error 2
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/src'>
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/'>
make: *** [all] Error 2
Build step 'Execute shell' marked build as failure
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