[MOAB-dev] Build failed in Jenkins: moab32par #371
jenkins-ci at mcs.anl.gov
jenkins-ci at mcs.anl.gov
Thu Mar 27 00:31:00 CDT 2014
See <https://jenkins-ci.mcs.anl.gov/job/moab32par/371/changes>
Changes:
[davisa] Added new default argument to ray_fire to allow entrance intersections to be allowed for geant4
[davisa] Added comments regarding the new default arguments to rayfire
[davisa] updated doxygen comment and made arguments consistent
[davisa] removed extraneous comments
[davisa] made default arguments for ray_fire clear
[davisa] added dagmc test driver file
[davisa] modified to add new dagmc test
[davisa] modified to add new dagmc test
[davisa] added test file to meshdir
[davisa] modified makefile for dagmc tests
[davisa] added files from dagmc_meshdir as input to test
[davisa] added more tests
[davisa] updated args in point_in test
[davisa] updated args in point_in test
[davisa] added more dagmc test to simple tests
[davisa] added point in volume tests
[davisa] renamed file
[davisa] modifed makefile to allow rayfire tests
[davisa] added rayfire tests
[davisa] renamed dagmc_test
[davisa] updated ray_fire with history test
[davisa] updated signature of ray_fire calls
[davisa] removed cgm dependence
[davisa] added CGM_FLAGS to makefile
------------------------------------------
[...truncated 1567 lines...]
dagmc_pointinvol_test.cpp:59:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:59:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:81:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:81:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:103:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:103:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:125:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:125:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:147:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:147:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:169:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:169:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:191:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:191:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:221:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:221:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:251:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:251:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:281:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:281:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:311:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:311:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:341:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:341:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:371:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:371:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp:401:25: warning: integer constant is so large that it is unsigned [enabled by default]
dagmc_pointinvol_test.cpp:401:3: warning: this decimal constant is unsigned only in ISO C90 [enabled by default]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_setup_test()’:
dagmc_pointinvol_test.cpp:39:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_in()’:
dagmc_pointinvol_test.cpp:51:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp:52:13: warning: unused variable ‘rval’ [-Wunused-variable]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_in_vol_1()’:
dagmc_pointinvol_test.cpp:59:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_in_vol_2()’:
dagmc_pointinvol_test.cpp:81:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_in_vol_3()’:
dagmc_pointinvol_test.cpp:103:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_in_vol_4()’:
dagmc_pointinvol_test.cpp:125:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_in_vol_5()’:
dagmc_pointinvol_test.cpp:147:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_in_vol_6()’:
dagmc_pointinvol_test.cpp:169:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_on_corner_1()’:
dagmc_pointinvol_test.cpp:191:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_on_corner_2()’:
dagmc_pointinvol_test.cpp:221:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_on_corner_3()’:
dagmc_pointinvol_test.cpp:251:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_on_corner_4()’:
dagmc_pointinvol_test.cpp:281:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_on_corner_5()’:
dagmc_pointinvol_test.cpp:311:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_on_corner_6()’:
dagmc_pointinvol_test.cpp:341:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_on_corner_7()’:
dagmc_pointinvol_test.cpp:371:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_point_on_corner_8()’:
dagmc_pointinvol_test.cpp:401:25: warning: large integer implicitly truncated to unsigned type [-Woverflow]
dagmc_pointinvol_test.cpp: In function ‘void dagmc_setup_test()’:
dagmc_pointinvol_test.cpp:44:26: warning: ‘vol’ may be used uninitialized in this function [-Wuninitialized]
mv -f .deps/dagmc_pointinvol_test-dagmc_pointinvol_test.Tpo .deps/dagmc_pointinvol_test-dagmc_pointinvol_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/homes/fathom/lib32/jenkins/cgm/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -lcgm -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -lcubiti19 -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o dagmc_pointinvol_test dagmc_pointinvol_test-dagmc_pointinvol_test.o ../../src/libMOAB.la ../../tools/dagmc/DagMC.lo -lm
libtool: link: mpicxx -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/homes/fathom/lib32/jenkins/cgm/include -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o dagmc_pointinvol_test dagmc_pointinvol_test-dagmc_pointinvol_test.o ../../tools/dagmc/DagMC.o -L./src/mpl -L./src/openpa/src -lrt -lpthread -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
make check-TESTS
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
FAIL: dagmc_simple_test
FAIL: dagmc_rayfire_test
FAIL: dagmc_pointinvol_test
=============================
3 of 3 tests failed
See test/dagmc/test-suite.log
=============================
make[4]: *** [test-suite.log] Error 1
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
make[3]: *** [check-TESTS] Error 2
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
make[2]: *** [check-am] Error 2
make[2]: Target `check' not remade because of errors.
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
Making check in h5file
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make h5test h5legacy h5varlen h5sets_test h5regression h5partial h5portable dump_sets
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -I.. -I./.. -I../../src -I../../src/io -I../../src/io/mhdf/include -I../../src -I../../src/parallel -I../../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT h5file_test.o -MD -MP -MF .deps/h5file_test.Tpo -c -o h5file_test.o h5file_test.cpp
mv -f .deps/h5file_test.Tpo .deps/h5file_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5test h5file_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5test h5file_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -I.. -I./.. -I../../src -I../../src/io -I../../src/io/mhdf/include -I../../src -I../../src/parallel -I../../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT h5legacy.o -MD -MP -MF .deps/h5legacy.Tpo -c -o h5legacy.o h5legacy.cpp
mv -f .deps/h5legacy.Tpo .deps/h5legacy.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5legacy h5legacy.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5legacy h5legacy.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -I.. -I./.. -I../../src -I../../src/io -I../../src/io/mhdf/include -I../../src -I../../src/parallel -I../../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT h5varlen.o -MD -MP -MF .deps/h5varlen.Tpo -c -o h5varlen.o h5varlen.cpp
mv -f .deps/h5varlen.Tpo .deps/h5varlen.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5varlen h5varlen.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5varlen h5varlen.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -I.. -I./.. -I../../src -I../../src/io -I../../src/io/mhdf/include -I../../src -I../../src/parallel -I../../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT h5sets_test.o -MD -MP -MF .deps/h5sets_test.Tpo -c -o h5sets_test.o h5sets_test.cpp
mv -f .deps/h5sets_test.Tpo .deps/h5sets_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5sets_test h5sets_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5sets_test h5sets_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -I.. -I./.. -I../../src -I../../src/io -I../../src/io/mhdf/include -I../../src -I../../src/parallel -I../../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT h5regression.o -MD -MP -MF .deps/h5regression.Tpo -c -o h5regression.o h5regression.cpp
mv -f .deps/h5regression.Tpo .deps/h5regression.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5regression h5regression.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5regression h5regression.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -I.. -I./.. -I../../src -I../../src/io -I../../src/io/mhdf/include -I../../src -I../../src/parallel -I../../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT h5partial.o -MD -MP -MF .deps/h5partial.Tpo -c -o h5partial.o h5partial.cpp
mv -f .deps/h5partial.Tpo .deps/h5partial.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5partial h5partial.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5partial h5partial.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -I.. -I./.. -I../../src -I../../src/io -I../../src/io/mhdf/include -I../../src -I../../src/parallel -I../../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT h5portable.o -MD -MP -MF .deps/h5portable.Tpo -c -o h5portable.o h5portable.cpp
mv -f .deps/h5portable.Tpo .deps/h5portable.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5portable h5portable.o ../../src/libMOAB.la -lm
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make[3]: `dump_sets' is up to date.
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make check-TESTS
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
PASS: h5test
PASS: h5legacy
PASS: h5varlen
PASS: h5sets_test
PASS: h5regression
PASS: h5partial
PASS: h5portable
==================
All 7 tests passed
==================
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
Making check in parallel
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make pcomm_unit parallel_unit_tests uber_parallel_test scdtest pcomm_serial par_spatial_locator_test scdpart read_nc_par ucdtrvpart mpastrvpart parallel_hdf5_test mhdf_parallel parallel_write_test mbparallelcomm_test partcheck structured3 parmerge
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT pcomm_unit.o -MD -MP -MF .deps/pcomm_unit.Tpo -c -o pcomm_unit.o pcomm_unit.cpp
mv -f .deps/pcomm_unit.Tpo .deps/pcomm_unit.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o pcomm_unit pcomm_unit.o ../../src/libMOAB.la -lm
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mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT parallel_unit_tests.o -MD -MP -MF .deps/parallel_unit_tests.Tpo -c -o parallel_unit_tests.o parallel_unit_tests.cpp
mv -f .deps/parallel_unit_tests.Tpo .deps/parallel_unit_tests.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o parallel_unit_tests parallel_unit_tests.o ../../src/libMOAB.la -lm
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mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT uber_parallel_test.o -MD -MP -MF .deps/uber_parallel_test.Tpo -c -o uber_parallel_test.o uber_parallel_test.cpp
mv -f .deps/uber_parallel_test.Tpo .deps/uber_parallel_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o uber_parallel_test uber_parallel_test.o ../../src/libMOAB.la -lm
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mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT scdtest.o -MD -MP -MF .deps/scdtest.Tpo -c -o scdtest.o scdtest.cpp
mv -f .deps/scdtest.Tpo .deps/scdtest.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o scdtest scdtest.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o scdtest scdtest.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT pcomm_serial.o -MD -MP -MF .deps/pcomm_serial.Tpo -c -o pcomm_serial.o pcomm_serial.cpp
mv -f .deps/pcomm_serial.Tpo .deps/pcomm_serial.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o pcomm_serial pcomm_serial.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o pcomm_serial pcomm_serial.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT par_spatial_locator_test.o -MD -MP -MF .deps/par_spatial_locator_test.Tpo -c -o par_spatial_locator_test.o par_spatial_locator_test.cpp
mv -f .deps/par_spatial_locator_test.Tpo .deps/par_spatial_locator_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o par_spatial_locator_test par_spatial_locator_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o par_spatial_locator_test par_spatial_locator_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT scdpart.o -MD -MP -MF .deps/scdpart.Tpo -c -o scdpart.o scdpart.cpp
mv -f .deps/scdpart.Tpo .deps/scdpart.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o scdpart scdpart.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o scdpart scdpart.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT read_nc.o -MD -MP -MF .deps/read_nc.Tpo -c -o read_nc.o `test -f '../io/read_nc.cpp' || echo './'`../io/read_nc.cpp
mv -f .deps/read_nc.Tpo .deps/read_nc.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o read_nc_par read_nc.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o read_nc_par read_nc.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT ucdtrvpart.o -MD -MP -MF .deps/ucdtrvpart.Tpo -c -o ucdtrvpart.o ucdtrvpart.cpp
mv -f .deps/ucdtrvpart.Tpo .deps/ucdtrvpart.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o ucdtrvpart ucdtrvpart.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o ucdtrvpart ucdtrvpart.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT mpastrvpart.o -MD -MP -MF .deps/mpastrvpart.Tpo -c -o mpastrvpart.o mpastrvpart.cpp
mv -f .deps/mpastrvpart.Tpo .deps/mpastrvpart.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o mpastrvpart mpastrvpart.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o mpastrvpart mpastrvpart.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT parallel_hdf5_test.o -MD -MP -MF .deps/parallel_hdf5_test.Tpo -c -o parallel_hdf5_test.o parallel_hdf5_test.cc
mv -f .deps/parallel_hdf5_test.Tpo .deps/parallel_hdf5_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o parallel_hdf5_test parallel_hdf5_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o parallel_hdf5_test parallel_hdf5_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CC --mode=link mpicc -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o mhdf_parallel mhdf_parallel.o ../../src/libMOAB.la -lhdf5 -lm
libtool: link: mpicc -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o mhdf_parallel mhdf_parallel.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -lz -lm -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT parallel_write_test.o -MD -MP -MF .deps/parallel_write_test.Tpo -c -o parallel_write_test.o parallel_write_test.cc
mv -f .deps/parallel_write_test.Tpo .deps/parallel_write_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o parallel_write_test parallel_write_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o parallel_write_test parallel_write_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT mbparallelcomm_test.o -MD -MP -MF .deps/mbparallelcomm_test.Tpo -c -o mbparallelcomm_test.o mbparallelcomm_test.cpp
mv -f .deps/mbparallelcomm_test.Tpo .deps/mbparallelcomm_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o mbparallelcomm_test mbparallelcomm_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o mbparallelcomm_test mbparallelcomm_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT partcheck.o -MD -MP -MF .deps/partcheck.Tpo -c -o partcheck.o partcheck.cpp
mv -f .deps/partcheck.Tpo .deps/partcheck.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o partcheck partcheck.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o partcheck partcheck.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT structured3.o -MD -MP -MF .deps/structured3.Tpo -c -o structured3.o structured3.cpp
mv -f .deps/structured3.Tpo .deps/structured3.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o structured3 structured3.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o structured3 structured3.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I. -I.. -I./.. -I../../src -I../../src -I../../src/parallel -I../../src/io/mhdf/include -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT parmerge.o -MD -MP -MF .deps/parmerge.Tpo -c -o parmerge.o parmerge.cpp
mv -f .deps/parmerge.Tpo .deps/parmerge.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o parmerge parmerge.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o parmerge parmerge.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make check-TESTS
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
PASS: pcomm_unit
PASS: parallel_unit_tests
PASS: uber_parallel_test
PASS: scdtest
PASS: pcomm_serial
PASS: par_spatial_locator_test
PASS: scdpart
PASS: read_nc_par
PASS: ucdtrvpart
PASS: mpastrvpart
PASS: parallel_hdf5_test
PASS: mhdf_parallel
PASS: parallel_write_test
===================
All 13 tests passed
===================
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
Making check in oldinc
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/oldinc'>
make test_oldinc
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/oldinc'>
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -I../../src -I../../src/parallel -I../../src/oldinc -I../../src -I../../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT test_oldinc.o -MD -MP -MF .deps/test_oldinc.Tpo -c -o test_oldinc.o test_oldinc.cpp
mv -f .deps/test_oldinc.Tpo .deps/test_oldinc.Po
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o test_oldinc test_oldinc.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o test_oldinc test_oldinc.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/oldinc'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/oldinc'>
make[1]: *** [check-recursive] Error 1
make[1]: Target `check' not remade because of errors.
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test'>
Making check in doc
make[1]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/doc'>
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/doc'>
make[1]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/'>
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/'>
make: *** [check-recursive] Error 1
make: Target `check' not remade because of errors.
Build step 'Execute shell' marked build as failure
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