[MOAB-dev] r5858 - in MOAB/trunk: doc src src/io src/moab tools tools/mbcoupler

[tautges at mcs.anl.gov]

Author: tautges
Date: 2012-11-08 10:35:46 -0600 (Thu, 08 Nov 2012)
New Revision: 5858

Added:
   MOAB/trunk/src/SpectralMeshTool.cpp
   MOAB/trunk/src/moab/SpectralMeshTool.hpp
Modified:
   MOAB/trunk/doc/MOAB-UG.doc
   MOAB/trunk/doc/metadata_info.doc
   MOAB/trunk/src/Core.cpp
   MOAB/trunk/src/Makefile.am
   MOAB/trunk/src/io/ReadNC.cpp
   MOAB/trunk/src/io/ReadNC.hpp
   MOAB/trunk/tools/mbcoupler/addfield.cpp
   MOAB/trunk/tools/mbcoupler/mbcoupler_test.cpp
   MOAB/trunk/tools/size.cpp
Log:
Two primary changes:
- fixing a bug in get_coords that I'd introduced when I enabled this function for non-vertices
 (moral: always run valgrind...); and some improvements to mbcoupler_test to help chase down
 solution transfer error.

- spectral mesh: introducing new SpectralMeshTool, and conventions for handling spectral meshes;
  not certain about this API yet, so comments not welcome, but will solicite them when I'm
  able to get back to this.

Passes make check, serial and parallel.

mbcoupler_test: added -meth <method> argument, defaulted to Coupler::CONSTANT; allows input
  of coupling method, which was hardwired before depending on tag name.  Also commented out 
  initialization of spectral stuff for now.

addfield: made default field simply the distance from the origin instead of 1/r with clamp.
  Also now using moab's get_coords to get element coordinates.

mbsize: added more options, similar to options to mbconvert, that allows read options to be input,
  so we can run this in parallel (with parallel reading) too.

doc/MOAB-UG.doc, metadata_info.doc: added info on spectral element conventional tags.

SpectralMeshTool.[c,h]pp, src/Makefile.am: added new SpectralMeshTool class; this is a work in 
  progress, not certain yet about the interface.

src/Core.cpp: fixed bug in get_coords for elements, would've turned up had I run valgrind originally...

src/io/ReadNC.cpp: some rearrangements of variables vs. arguments, and using the new SpectralMeshTool.



Modified: MOAB/trunk/doc/MOAB-UG.doc
===================================================================
(Binary files differ)

Modified: MOAB/trunk/doc/metadata_info.doc
===================================================================
(Binary files differ)

Modified: MOAB/trunk/src/Core.cpp
===================================================================
--- MOAB/trunk/src/Core.cpp	2012-11-07 15:19:56 UTC (rev 5857)
+++ MOAB/trunk/src/Core.cpp	2012-11-08 16:35:46 UTC (rev 5858)
@@ -1075,7 +1075,7 @@
     }
     else {
       static std::vector<EntityHandle> dum_conn(CN::MAX_NODES_PER_ELEMENT);
-      static std::vector<double> dum_pos(CN::MAX_NODES_PER_ELEMENT);
+      static std::vector<double> dum_pos(3*CN::MAX_NODES_PER_ELEMENT);
       static const EntityHandle *conn;
       static int num_conn;
       status = get_connectivity(*iter, conn, num_conn, false, &dum_conn);

Modified: MOAB/trunk/src/Makefile.am
===================================================================
--- MOAB/trunk/src/Makefile.am	2012-11-07 15:19:56 UTC (rev 5857)
+++ MOAB/trunk/src/Makefile.am	2012-11-08 16:35:46 UTC (rev 5858)
@@ -112,6 +112,7 @@
   SmoothFace.hpp \
   SparseTag.cpp \
   SparseTag.hpp \
+  SpectralMeshTool.cpp \
   StructuredElementSeq.cpp \
   StructuredElementSeq.hpp \
   SweptElementData.cpp \
@@ -190,6 +191,7 @@
   moab/ScdInterface.hpp \
   moab/SetIterator.hpp \
   moab/Skinner.hpp \
+  moab/SpectralMeshTool.hpp \
   moab/Types.hpp \
   moab/UnknownInterface.hpp \
   moab/Util.hpp \

Added: MOAB/trunk/src/SpectralMeshTool.cpp
===================================================================
--- MOAB/trunk/src/SpectralMeshTool.cpp	                        (rev 0)
+++ MOAB/trunk/src/SpectralMeshTool.cpp	2012-11-08 16:35:46 UTC (rev 5858)
@@ -0,0 +1,177 @@
+#include "moab/SpectralMeshTool.hpp"
+#include "moab/Interface.hpp"
+#include "Internals.hpp"