[MOAB-dev] buildbot failure in moab-par: failed test
Tim Tautges
tautges at mcs.anl.gov
Wed Nov 16 08:26:08 CST 2011
Sorry gang, this one's mine, and I have a fix for it that I'll commit today.
- tim
On 11/16/2011 12:09 AM, moab-dev at mcs.anl.gov wrote:
>
> Fathom <http://gnep.mcs.anl.gov:8010/>: moab-par <http://gnep.mcs.anl.gov:8010/builders/moab-par> build #672
> <http://gnep.mcs.anl.gov:8010/builders/moab-par/builds/672>
>
> *Results:* failed test
> *Buildslave:* gnep
> *Revision:* None
> *Reason:* The Nightly scheduler named 'nightly' triggered this build
>
>
> Log Excerpt
>
> make[2]: Entering directory `/disks/itaps-buildslave/moab-par/build/itaps'
> Making check in imesh
> make[3]: Entering directory `/disks/itaps-buildslave/moab-par/build/itaps/imesh'
> make check-am
> make[4]: Entering directory `/disks/itaps-buildslave/moab-par/build/itaps/imesh'
> make testc_cbind MOAB_iMesh_unit_tests MOAB_iMesh_extensions_tests ScdMesh partest MOAB_iMeshP_unit_tests
> make[5]: Entering directory `/disks/itaps-buildslave/moab-par/build/itaps/imesh'
> mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem /home/jvporter/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT testc_cbind.o -MD -MP -MF .deps/testc_cbind.Tpo -c -o testc_cbind.o testc_cbind.c
> mv -f .deps/testc_cbind.Tpo .deps/testc_cbind.Po
> /bin/sh ../../libtool --tag=CC --mode=link mpicc -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -o testc_cbind testc_cbind.o libiMesh.la ../../src/libMOAB.la -L/usr/lib -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> libtool: link: mpicc -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o testc_cbind testc_cbind.o -L/home/jvporter/packages/hdf5-x64-parallel/lib ./.libs/libiMesh.a /disks/itaps-buildslave/moab-par/build/src/.libs/libMOAB.a ../../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem /home/jvporter/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT MOAB_iMesh_unit_tests.o -MD -MP -MF .deps/MOAB_iMesh_unit_tests.Tpo -c -o MOAB_iMesh_unit_tests.o MOAB_iMesh_unit_tests.cpp
> mv -f .deps/MOAB_iMesh_unit_tests.Tpo .deps/MOAB_iMesh_unit_tests.Po
> /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -o MOAB_iMesh_unit_tests MOAB_iMesh_unit_tests.o libiMesh.la ../../src/libMOAB.la -L/usr/lib -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o MOAB_iMesh_unit_tests MOAB_iMesh_unit_tests.o -L/home/jvporter/packages/hdf5-x64-parallel/lib ./.libs/libiMesh.a /disks/itaps-buildslave/moab-par/build/src/.libs/libMOAB.a ../../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem /home/jvporter/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT MOAB_iMesh_extensions_tests.o -MD -MP -MF .deps/MOAB_iMesh_extensions_tests.Tpo -c -o MOAB_iMesh_extensions_tests.o MOAB_iMesh_extensions_tests.cpp
> mv -f .deps/MOAB_iMesh_extensions_tests.Tpo .deps/MOAB_iMesh_extensions_tests.Po
> /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -o MOAB_iMesh_extensions_tests MOAB_iMesh_extensions_tests.o libiMesh.la ../../src/libMOAB.la -L/usr/lib -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o MOAB_iMesh_extensions_tests MOAB_iMesh_extensions_tests.o -L/home/jvporter/packages/hdf5-x64-parallel/lib ./.libs/libiMesh.a /disks/itaps-buildslave/moab-par/build/src/.libs/libMOAB.a ../../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> \
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem /home/jvporter/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -g -O2 -O2 -c -o ScdMesh.o ScdMesh.F90
> /bin/sh ../../libtool --tag=FC --mode=link mpif90 -g -O2 -O2 -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -o ScdMesh ScdMesh.o libiMesh.la ../../src/libMOAB.la -L/usr/lib -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> libtool: link: mpif90 -g -O2 -O2 -o ScdMesh ScdMesh.o -L/home/jvporter/packages/hdf5-x64-parallel/lib ./.libs/libiMesh.a /disks/itaps-buildslave/moab-par/build/src/.libs/libMOAB.a ../../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem /home/jvporter/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT partest.o -MD -MP -MF .deps/partest.Tpo -c -o partest.o partest.cpp
> mv -f .deps/partest.Tpo .deps/partest.Po
> /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -o partest partest.o libiMesh.la ../../src/libMOAB.la -L/usr/lib -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o partest partest.o -L/home/jvporter/packages/hdf5-x64-parallel/lib ./.libs/libiMesh.a /disks/itaps-buildslave/moab-par/build/src/.libs/libMOAB.a ../../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/home/jvporter/packages/hdf5-x64-parallel/include -isystem /home/jvporter/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT MOAB_iMeshP_unit_tests.o -MD -MP -MF .deps/MOAB_iMeshP_unit_tests.Tpo -c -o MOAB_iMeshP_unit_tests.o MOAB_iMeshP_unit_tests.cpp
> /usr/include/c++/4.4/bits/stl_algo.h: In function 'int test_get_part_boundary(iMesh_Instance_Private*, iMeshP_PartitionHandle_Private*, const PartMap&)':
> /usr/include/c++/4.4/bits/stl_algo.h:2178: warning: array subscript is above array bounds
> /usr/include/c++/4.4/bits/stl_algo.h: In function 'int test_part_boundary_iter(iMesh_Instance_Private*, iMeshP_PartitionHandle_Private*, const PartMap&)':
> /usr/include/c++/4.4/bits/stl_algo.h:2178: warning: array subscript is above array bounds
> /usr/include/c++/4.4/bits/stl_algo.h:2178: warning: array subscript is above array bounds
> mv -f .deps/MOAB_iMeshP_unit_tests.Tpo .deps/MOAB_iMeshP_unit_tests.Po
> /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -L/home/jvporter/packages/hdf5-x64-parallel/lib -o MOAB_iMeshP_unit_tests MOAB_iMeshP_unit_tests.o libiMesh.la ../../src/libMOAB.la -L/usr/lib -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -o MOAB_iMeshP_unit_tests MOAB_iMeshP_unit_tests.o -L/home/jvporter/packages/hdf5-x64-parallel/lib ./.libs/libiMesh.a /disks/itaps-buildslave/moab-par/build/src/.libs/libMOAB.a ../../src/.libs/libMOAB.a -lnetcdf /homes/jvporter/lib/libhdf5.a -lz -L/usr/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -L/usr/lib/x86_64-linux-gnu -lmpichcxx -lmpich -lopa -lpthread -lrt -lstdc++ -lm
> ...make check-TESTS
> make[5]: Entering directory `/disks/itaps-buildslave/moab-par/build/itaps/imesh'
> make[6]: Entering directory `/disks/itaps-buildslave/moab-par/build/itaps/imesh'
> PASS: testc_cbind
> PASS: MOAB_iMesh_unit_tests
> PASS: MOAB_iMesh_extensions_tests
> /bin/sh: line 1: 21796 Segmentation fault "$tst" > ScdMesh.log-t 2>&1
> FAIL: ScdMesh
> PASS: partest
> PASS: MOAB_iMeshP_unit_tests
> ==============================
> 1 of 6 tests failed
> See itaps/imesh/test-suite.log
> ==============================
>
--
================================================================
"You will keep in perfect peace him whose mind is
steadfast, because he trusts in you." Isaiah 26:3
Tim Tautges Argonne National Laboratory
(tautges at mcs.anl.gov) (telecommuting from UW-Madison)
phone (gvoice): (608) 354-1459 1500 Engineering Dr.
fax: (608) 263-4499 Madison, WI 53706
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