[MOAB-dev] Fwd: moab-announce Digest, Vol 5, Issue 2

[Hong-Jun Kim]

If you still have the same problems with Tim's suggestion as below, could you please send me your "config.log" and error signs for me to replicate it?

In addition, can you use "moab-dev at mcs.anl.gov" for this kind of question?
"moab-announce" is for announcing new things and upgrades and looks it has some latencies to get mail.(I just got Tim's message which looks sent yesterday)

Thanks.

-----------------------------
Hong-Jun Kim
Post-doc researcher
MCS, Argonne National Laboratory
9700 S. Cass Ave. B240/R2147
Argonne, IL 60439
630-252-4791
hongjun at mcs.anl.gov
-----------------------------

> Hong-Jun,
> Can you check this out? Tiantian, we haven't seen this problem
> anywhere. The output from your configure looks like
> you're on a 64bit machine, but can you verify that? The only other
> thing that looks strange in your configure is the
> LFLAGS=-static; you should be able to get the same thing, in a more
> standard way, using --disable-shared
> --enable-static. Could you try that? Thanks.
> 
> - tim
> 
> On 10/11/2011 12:58 PM, Tiantian Xu wrote:
> >
> > Hi,
> >
> > I was trying to build moab but met with the "mbcn_test fail" during
> > make
> > check.
> > The commands I used to build the library were:
> >
> > ./configure LFLAGS=-static
> > --with-mpi=/home/tiantian/ITL/mpich2-1.4.1p1/gcc
> > --with-hdf5=/home/tiantian/hdf5
> > --with-netcdf=/home/tiantian/ITL/netcdf-4.1.3/gcc
> > --with-zlib=/home/tiantian/ITL/zlib-1.2.5/gcc
> > --with-szip=/home/tiantian/ITL/szip-2.1/gcc
> > --prefix=/home/tiantian/ITL/moab 2>&1 | tee configure.log
> > make 2>&1 | make.log
> > make check 2>&1 | tee make.check.log
> >
> > Looks like the mbcn_test is about query on entities, I don't know
> > why
> > this went wrong. Later I ignored the make check errors and did "make
> > install". I tried to perform parallel read/write and found mbconvert
> > went wrong too:
> >
> > $mpiexec -np 2 ./mbconvert -O PARALLEL=READ_PART -O
> > PARTITION=MATERIAL_SET -O PARALLEL_RESOLVE_SHARED_ENTS -O
> > PARALLEL_GHOSTS=3.0.1 -o PARALLEL=WRITE_PART ./64bricks_512hex.h5m
> > dummy.h5m
> > Read "./64bricks_512hex.h5m"
> >
> > =====================================================================================
> > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> > = EXIT CODE: 139
> > = CLEANING UP REMAINING PROCESSES
> > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> > =====================================================================================
> > APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
> > (signal 11)
> >
> > I suspect some fundamental functions in moab were not properly made?
> > I had attached the log files. Please take a look.
> >
> > Thanks a lot for your help!
> >
> > Best,
> > Tiantian
> >
> 
> --
> ================================================================
> "You will keep in perfect peace him whose mind is
> steadfast, because he trusts in you." Isaiah 26:3
> 
> Tim Tautges Argonne National Laboratory
> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
> phone: (608) 263-8485 1500 Engineering Dr.
> fax: (608) 263-4499 Madison, WI 53706
> 
> 
> 
> ------------------------------
> 
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> 
> 
> End of moab-announce Digest, Vol 5, Issue 2
> *******************************************