[MOAB-dev] buildbot failure in Fathom on moab-serial

[moab-dev at mcs.anl.gov]

The Fathomatic has detected a failed build of moab-serial on Fathom.
Full details are available at:
 http://gnep.mcs.anl.gov:8010/builders/moab-serial/builds/437

Buildbot URL: http://gnep.mcs.anl.gov:8010/

Buildslave for this Build: gnep

Build Reason: The Nightly scheduler named 'nightly' triggered this build
Build Source Stamp: None
Blamelist: 

BUILD FAILED: failed failed slave lost

LOG EXCERPT:
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT SysUtil.lo -MD -MP -MF .deps/SysUtil.Tpo -c -o SysUtil.lo SysUtil.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT SysUtil.lo -MD -MP -MF .deps/SysUtil.Tpo -c SysUtil.cpp -o SysUtil.o
mv -f .deps/SysUtil.Tpo .deps/SysUtil.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT TagInfo.lo -MD -MP -MF .deps/TagInfo.Tpo -c -o TagInfo.lo TagInfo.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT TagInfo.lo -MD -MP -MF .deps/TagInfo.Tpo -c TagInfo.cpp -o TagInfo.o
mv -f .deps/TagInfo.Tpo .deps/TagInfo.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT TypeSequenceManager.lo -MD -MP -MF .deps/TypeSequenceManager.Tpo -c -o TypeSequenceManager.lo TypeSequenceManager.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT TypeSequenceManager.lo -MD -MP -MF .deps/TypeSequenceManager.Tpo -c TypeSequenceManager.cpp -o TypeSequenceManager.o
mv -f .deps/TypeSequenceManager.Tpo .deps/TypeSequenceManager.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT UnstructuredElemSeq.lo -MD -MP -MF .deps/UnstructuredElemSeq.Tpo -c -o UnstructuredElemSeq.lo UnstructuredElemSeq.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT UnstructuredElemSeq.lo -MD -MP -MF .deps/UnstructuredElemSeq.Tpo -c UnstructuredElemSeq.cpp -o UnstructuredElemSeq.o
mv -f .deps/UnstructuredElemSeq.Tpo .deps/UnstructuredElemSeq.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT Util.lo -MD -MP -MF .deps/Util.Tpo -c -o Util.lo Util.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT Util.lo -MD -MP -MF .deps/Util.Tpo -c Util.cpp -o Util.o
mv -f .deps/Util.Tpo .deps/Util.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT VarLenDenseTag.lo -MD -MP -MF .deps/VarLenDenseTag.Tpo -c -o VarLenDenseTag.lo VarLenDenseTag.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT VarLenDenseTag.lo -MD -MP -MF .deps/VarLenDenseTag.Tpo -c VarLenDenseTag.cpp -o VarLenDenseTag.o
mv -f .deps/VarLenDenseTag.Tpo .deps/VarLenDenseTag.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT VarLenSparseTag.lo -MD -MP -MF .deps/VarLenSparseTag.Tpo -c -o VarLenSparseTag.lo VarLenSparseTag.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT VarLenSparseTag.lo -MD -MP -MF .deps/VarLenSparseTag.Tpo -c VarLenSparseTag.cpp -o VarLenSparseTag.o
mv -f .deps/VarLenSparseTag.Tpo .deps/VarLenSparseTag.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT VertexSequence.lo -MD -MP -MF .deps/VertexSequence.Tpo -c -o VertexSequence.lo VertexSequence.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT VertexSequence.lo -MD -MP -MF .deps/VertexSequence.Tpo -c VertexSequence.cpp -o VertexSequence.o
mv -f .deps/VertexSequence.Tpo .deps/VertexSequence.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT WriteUtil.lo -MD -MP -MF .deps/WriteUtil.Tpo -c -o WriteUtil.lo WriteUtil.cpp
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT WriteUtil.lo -MD -MP -MF .deps/WriteUtil.Tpo -c WriteUtil.cpp -o WriteUtil.o
WriteUtil.cpp: In member function 'virtual moab::ErrorCode moab::WriteUtil::get_entity_list_pointers(moab::Range::const_iterator, moab::Range::const_iterator, const moab::EntityHandle**, moab::WriteUtilIface::EntityListType, int*, unsigned char*)':
WriteUtil.cpp:871: warning: 'len' may be used uninitialized in this function
mv -f .deps/WriteUtil.Tpo .deps/WriteUtil.Plo
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DHDF5_FILE -DNETCDF_FILE  -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT moab_mpe.lo -MD -MP -MF .deps/moab_mpe.Tpo -c -o moab_mpe.lo moab_mpe.c
 gcc -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG -MT moab_mpe.lo -MD -MP -MF .deps/moab_mpe.Tpo -c moab_mpe.c -o moab_mpe.o
mv -f .deps/moab_mpe.Tpo .deps/moab_mpe.Plo
/bin/sh ../libtool --tag=CXX   --mode=link g++  -Wall -pipe -pedantic -Wno-long-long -O2 -DNDEBUG   -o libMOAB.la -rpath /usr/local/lib AdaptiveKDTree.lo AEntityFactory.lo AffineXform.lo AxisBox.lo BitPage.lo BitTag.lo BSPTree.lo BSPTreePoly.lo CN.lo CartVect.lo Core.lo DebugOutput.lo DenseTag.lo DualTool.lo EntitySequence.lo Factory.lo FBEngine.lo FileOptions.lo GeomUtil.lo GeomTopoTool.lo HigherOrderFactory.lo HomXform.lo Matrix3.lo MergeMesh.lo MeshSet.lo MeshSetSequence.lo MeshTag.lo MeshTopoUtil.lo OrientedBox.lo OrientedBoxTreeTool.lo PolyElementSeq.lo Range.lo RangeSeqIntersectIter.lo ReadUtil.lo ReaderWriterSet.lo ScdElementData.lo ScdInterface.lo ScdVertexData.lo SequenceData.lo SequenceManager.lo Skinner.lo SmoothCurve.lo SmoothFace.lo SparseTag.lo StructuredElementSeq.lo SweptElementData.lo SweptElementSeq.lo SweptVertexData.lo SysUtil.lo TagInfo.lo TypeSequenceManager.lo UnstructuredElemSeq.lo Util.lo VarLenDenseTag.lo VarLenSparseTag.lo VertexSequence.lo WriteUti
 l.lo moab_mpe.lo io/libmoabio.la  -lm
mkdir .libs
rm -fr .libs/libMOAB.lax
mkdir .libs/libMOAB.lax
rm -fr .libs/libMOAB.lax/libmoabio.a
mkdir .libs/libMOAB.lax/libmoabio.a
(cd .libs/libMOAB.lax/libmoabio.a && ar x /disk/itaps-buildslave/moab-serial/build/src/io/.libs/libmoabio.a)
ar cru .libs/libMOAB.a  AdaptiveKDTree.o AEntityFactory.o AffineXform.o AxisBox.o BitPage.o BitTag.o BSPTree.o BSPTreePoly.o CN.o CartVect.o Core.o DebugOutput.o DenseTag.o DualTool.o EntitySequence.o Factory.o FBEngine.o FileOptions.o GeomUtil.o GeomTopoTool.o HigherOrderFactory.o HomXform.o Matrix3.o MergeMesh.o MeshSet.o MeshSetSequence.o MeshTag.o MeshTopoUtil.o OrientedBox.o OrientedBoxTreeTool.o PolyElementSeq.o Range.o RangeSeqIntersectIter.o ReadUtil.o ReaderWriterSet.o ScdElementData.o ScdInterface.o ScdVertexData.o SequenceData.o SequenceManager.o Skinner.o SmoothCurve.o SmoothFace.o SparseTag.o StructuredElementSeq.o SweptElementData.o SweptElementSeq.o SweptVertexData.o SysUtil.o TagInfo.o TypeSequenceManager.o UnstructuredElemSeq.o Util.o VarLenDenseTag.o VarLenSparseTag.o VertexSequence.o WriteUtil.o moab_mpe.o  .libs/libMOAB.lax/libmoabio.a/nodes.o .libs/libMOAB.lax/libmoabio.a/WriteNCDF.o .libs/libMOAB.lax/libmoabio.a/ReadVtk.o .libs/libMOAB.lax/libmoabio.a/Re
 adSmf.o .libs/libMOAB.lax/libmoabio.a/ReadHDF5.o .libs/libMOAB.lax/libmoabio.a/GmshUtil.o .libs/libMOAB.lax/libmoabio.a/ReadNC.o .libs/libMOAB.lax/libmoabio.a/adjacency.o .libs/libMOAB.lax/libmoabio.a/ReadHDF5VarLen.o .libs/libMOAB.lax/libmoabio.a/ReadNCDF.o .libs/libMOAB.lax/libmoabio.a/ReadGmsh.o .libs/libMOAB.lax/libmoabio.a/ReadSTL.o .libs/libMOAB.lax/libmoabio.a/WriteGMV.o .libs/libMOAB.lax/libmoabio.a/ExoIIUtil.o .libs/libMOAB.lax/libmoabio.a/SMF_State.o .libs/libMOAB.lax/libmoabio.a/WriteTemplate.o .libs/libMOAB.lax/libmoabio.a/WriteSTL.o .libs/libMOAB.lax/libmoabio.a/WriteSmf.o .libs/libMOAB.lax/libmoabio.a/FileTokenizer.o .libs/libMOAB.lax/libmoabio.a/util.o .libs/libMOAB.lax/libmoabio.a/ReadMCNP5.o .libs/libMOAB.lax/libmoabio.a/WriteHDF5.o .libs/libMOAB.lax/libmoabio.a/file.o .libs/libMOAB.lax/libmoabio.a/file-handle.o .libs/libMOAB.lax/libmoabio.a/WriteGmsh.o .libs/libMOAB.lax/libmoabio.a/WriteSLAC.o .libs/libMOAB.lax/libmoabio.a/VtkUtil.o .libs/libMOAB.lax/libmoa
 bio.a/WriteAns.o .libs/libMOAB.lax/libmoabio.a/IODebugTrack.o .libs/libMOAB.lax/libmoabio.a/ReadIDEAS.o .libs/libMOAB.lax/libmoabio.a/ReadSms.o .libs/libMOAB.lax/libmoabio.a/ReadABAQUS.o .libs/libMOAB.lax/libmoabio.a/connectivity.o .libs/libMOAB.lax/libmoabio.a/tags.o .libs/libMOAB.lax/libmoabio.a/WriteVtk.o .libs/libMOAB.lax/libmoabio.a/status.o .libs/libMOAB.lax/libmoabio.a/Tqdcfr.o .libs/libMOAB.lax/libmoabio.a/file-desc.o .libs/libMOAB.lax/libmoabio.a/ReadTetGen.o .libs/libMOAB.lax/libmoabio.a/sets.o .libs/libMOAB.lax/libmoabio.a/ReadNASTRAN.o .libs/libMOAB.lax/libmoabio.a/ReadHDF5Dataset.o 
ranlib .libs/libMOAB.a
rm -fr .libs/libMOAB.lax
creating libMOAB.la
(cd .libs && rm -f libMOAB.la && ln -s ../libMOAB.la libMOAB.la)
 ...
Making all in oldinc
make[5]: Entering directory `/disk/itaps-buildslave/moab-serial/build/src/oldinc'
make[5]: Nothing to be done for `all'.
 ...
Making all in MeshFiles
make[3]: Entering directory `/disk/itaps-buildslave/moab-serial/build/MeshFiles'
Making all in unittest

sincerely,
 -The Fathomatic