[MOAB-dev] buildbot failure in Fathom on moab-shared

Mon Sep 27 00:16:57 CDT 2010

The Fathomatic has detected a failed build of moab-shared on Fathom.
Full details are available at:
 http://gnep.mcs.anl.gov:8010/builders/moab-shared/builds/237

Buildbot URL: http://gnep.mcs.anl.gov:8010/

Buildslave for this Build: gnep

Build Reason: 
Build Source Stamp: None
Blamelist: 

BUILD FAILED: failed compile

LOG EXCERPT:
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -O2 -DNDEBUG -MT VertexSequence.lo -MD -MP -MF .deps/VertexSequence.Tpo -c VertexSequence.cpp  -fPIC -DPIC -o .libs/VertexSequence.o
 g++ -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -O2 -DNDEBUG -MT VertexSequence.lo -MD -MP -MF .deps/VertexSequence.Tpo -c VertexSequence.cpp -o VertexSequence.o >/dev/null 2>&1
mv -f .deps/VertexSequence.Tpo .deps/VertexSequence.Plo
/bin/sh ../libtool --tag=CXX   --mode=link g++  -Wall -pipe -O2 -DNDEBUG   -o libMOAB.la -rpath /disk/itaps-buildslave/packages/moab-shared/lib AEntityFactory.lo BitTagServer.lo BSPTreePoly.lo DebugOutput.lo DualTool.lo EntitySequence.lo FileOptions.lo GeomTopoTool.lo HigherOrderFactory.lo HomXform.lo AdaptiveKDTree.lo AffineXform.lo AxisBox.lo BSPTree.lo CN.lo CartVect.lo Matrix3.lo Core.lo Factory.lo GeomUtil.lo MeshSet.lo OrientedBox.lo OrientedBoxTreeTool.lo Range.lo RangeSeqIntersectIter.lo ReadUtil.lo ReaderWriterSet.lo Skinner.lo SysUtil.lo Util.lo WriteUtil.lo MeshSetSequence.lo MeshTopoUtil.lo PolyElementSeq.lo ScdElementData.lo ScdVertexData.lo SequenceData.lo SequenceManager.lo SparseTagSuperCollection.lo SparseTagCollection.lo StructuredElementSeq.lo SweptElementData.lo SweptElementSeq.lo SweptVertexData.lo TagInfo.lo TagServer.lo TypeSequenceManager.lo UnstructuredElemSeq.lo VertexSequence.lo io/libmoabio.la  -lm
g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.2.4/crtbeginS.o  .libs/AEntityFactory.o .libs/BitTagServer.o .libs/BSPTreePoly.o .libs/DebugOutput.o .libs/DualTool.o .libs/EntitySequence.o .libs/FileOptions.o .libs/GeomTopoTool.o .libs/HigherOrderFactory.o .libs/HomXform.o .libs/AdaptiveKDTree.o .libs/AffineXform.o .libs/AxisBox.o .libs/BSPTree.o .libs/CN.o .libs/CartVect.o .libs/Matrix3.o .libs/Core.o .libs/Factory.o .libs/GeomUtil.o .libs/MeshSet.o .libs/OrientedBox.o .libs/OrientedBoxTreeTool.o .libs/Range.o .libs/RangeSeqIntersectIter.o .libs/ReadUtil.o .libs/ReaderWriterSet.o .libs/Skinner.o .libs/SysUtil.o .libs/Util.o .libs/WriteUtil.o .libs/MeshSetSequence.o .libs/MeshTopoUtil.o .libs/PolyElementSeq.o .libs/ScdElementData.o .libs/ScdVertexData.o .libs/SequenceData.o .libs/SequenceManager.o .libs/SparseTagSuperCollection.o .libs/SparseTagCollection.o .libs/StructuredElementSeq.o .libs/SweptElementData.o .
 libs/SweptElementSeq.o .libs/SweptVertexData.o .libs/TagInfo.o .libs/TagServer.o .libs/TypeSequenceManager.o .libs/UnstructuredElemSeq.o .libs/VertexSequence.o -Wl,--whole-archive io/.libs/libmoabio.a -Wl,--no-whole-archive  -lnetcdf_c++ -lnetcdf -L/usr/lib/mpich/lib/ /usr/lib/libhdf5.so -lpthread -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.2.4/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib/crtn.o  -Wl,-soname -Wl,libMOAB.so.0 -o .libs/libMOAB.so.0.0.0
(cd .libs && rm -f libMOAB.so.0 && ln -s libMOAB.so.0.0.0 libMOAB.so.0)
(cd .libs && rm -f libMOAB.so && ln -s libMOAB.so.0.0.0 libMOAB.so)
rm -fr .libs/libMOAB.lax
mkdir .libs/libMOAB.lax
rm -fr .libs/libMOAB.lax/libmoabio.a
mkdir .libs/libMOAB.lax/libmoabio.a
(cd .libs/libMOAB.lax/libmoabio.a && ar x /disk/itaps-buildslave/moab-shared/build/src/io/.libs/libmoabio.a)
ar cru .libs/libMOAB.a  AEntityFactory.o BitTagServer.o BSPTreePoly.o DebugOutput.o DualTool.o EntitySequence.o FileOptions.o GeomTopoTool.o HigherOrderFactory.o HomXform.o AdaptiveKDTree.o AffineXform.o AxisBox.o BSPTree.o CN.o CartVect.o Matrix3.o Core.o Factory.o GeomUtil.o MeshSet.o OrientedBox.o OrientedBoxTreeTool.o Range.o RangeSeqIntersectIter.o ReadUtil.o ReaderWriterSet.o Skinner.o SysUtil.o Util.o WriteUtil.o MeshSetSequence.o MeshTopoUtil.o PolyElementSeq.o ScdElementData.o ScdVertexData.o SequenceData.o SequenceManager.o SparseTagSuperCollection.o SparseTagCollection.o StructuredElementSeq.o SweptElementData.o SweptElementSeq.o SweptVertexData.o TagInfo.o TagServer.o TypeSequenceManager.o UnstructuredElemSeq.o VertexSequence.o  .libs/libMOAB.lax/libmoabio.a/nodes.o .libs/libMOAB.lax/libmoabio.a/WriteNCDF.o .libs/libMOAB.lax/libmoabio.a/ReadVtk.o .libs/libMOAB.lax/libmoabio.a/ReadSmf.o .libs/libMOAB.lax/libmoabio.a/ReadHDF5.o .libs/libMOAB.lax/libmoabio.a/GmshUtil
 .o .libs/libMOAB.lax/libmoabio.a/ReadNC.o .libs/libMOAB.lax/libmoabio.a/adjacency.o .libs/libMOAB.lax/libmoabio.a/ReadNCDF.o .libs/libMOAB.lax/libmoabio.a/ReadGmsh.o .libs/libMOAB.lax/libmoabio.a/ReadSTL.o .libs/libMOAB.lax/libmoabio.a/WriteGMV.o .libs/libMOAB.lax/libmoabio.a/ExoIIUtil.o .libs/libMOAB.lax/libmoabio.a/SMF_State.o .libs/libMOAB.lax/libmoabio.a/WriteTemplate.o .libs/libMOAB.lax/libmoabio.a/WriteSTL.o .libs/libMOAB.lax/libmoabio.a/WriteSmf.o .libs/libMOAB.lax/libmoabio.a/FileTokenizer.o .libs/libMOAB.lax/libmoabio.a/util.o .libs/libMOAB.lax/libmoabio.a/ReadMCNP5.o .libs/libMOAB.lax/libmoabio.a/WriteHDF5.o .libs/libMOAB.lax/libmoabio.a/file.o .libs/libMOAB.lax/libmoabio.a/file-handle.o .libs/libMOAB.lax/libmoabio.a/WriteGmsh.o .libs/libMOAB.lax/libmoabio.a/WriteSLAC.o .libs/libMOAB.lax/libmoabio.a/VtkUtil.o .libs/libMOAB.lax/libmoabio.a/WriteAns.o .libs/libMOAB.lax/libmoabio.a/IODebugTrack.o .libs/libMOAB.lax/libmoabio.a/ReadIDEAS.o .libs/libMOAB.lax/libmoabio.a/
 ReadSms.o .libs/libMOAB.lax/libmoabio.a/ReadABAQUS.o .libs/libMOAB.lax/libmoabio.a/connectivity.o .libs/libMOAB.lax/libmoabio.a/tags.o .libs/libMOAB.lax/libmoabio.a/WriteVtk.o .libs/libMOAB.lax/libmoabio.a/status.o .libs/libMOAB.lax/libmoabio.a/Tqdcfr.o .libs/libMOAB.lax/libmoabio.a/file-desc.o .libs/libMOAB.lax/libmoabio.a/ReadTetGen.o .libs/libMOAB.lax/libmoabio.a/sets.o .libs/libMOAB.lax/libmoabio.a/ReadNASTRAN.o .libs/libMOAB.lax/libmoabio.a/ReadHDF5Dataset.o 
ranlib .libs/libMOAB.a
rm -fr .libs/libMOAB.lax
creating libMOAB.la
(cd .libs && rm -f libMOAB.la && ln -s ../libMOAB.la libMOAB.la)
 ...
Making all in oldinc
make[5]: Entering directory `/disk/itaps-buildslave/moab-shared/build/src/oldinc'
make[5]: Nothing to be done for `all'.
 ...
Making all in MeshFiles
make[3]: Entering directory `/disk/itaps-buildslave/moab-shared/build/MeshFiles'
Making all in unittest
make[4]: Entering directory `/disk/itaps-buildslave/moab-shared/build/MeshFiles/unittest'
Making all in io
make[5]: Entering directory `/disk/itaps-buildslave/moab-shared/build/MeshFiles/unittest/io'
make[5]: Nothing to be done for `all'.
 ...
make[5]: Entering directory `/disk/itaps-buildslave/moab-shared/build/MeshFiles/unittest'
make[5]: Nothing to be done for `all-am'.
 ...
make[4]: Entering directory `/disk/itaps-buildslave/moab-shared/build/MeshFiles'
make[4]: Nothing to be done for `all-am'.
 ...
Making all in test
make[3]: Entering directory `/disk/itaps-buildslave/moab-shared/build/test'
Making all in .
make[4]: Entering directory `/disk/itaps-buildslave/moab-shared/build/test'
make[4]: Nothing to be done for `all-am'.
 ...
Making all in io
make[4]: Entering directory `/disk/itaps-buildslave/moab-shared/build/test/io'
make[4]: Nothing to be done for `all'.
 ...
Making all in dual
make[4]: Entering directory `/disk/itaps-buildslave/moab-shared/build/test/dual'
make[4]: Nothing to be done for `all'.
 ...
Making all in obb
make[4]: Entering directory `/disk/itaps-buildslave/moab-shared/build/test/obb'
make[4]: Nothing to be done for `all'.
 ...
Making all in perf
make[4]: Entering directory `/disk/itaps-buildslave/moab-shared/build/test/perf'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DHDF5_FILE -DNETCDF_FILE -I../../src -I../../src/io/mhdf/include -I../../src -I../../itaps/imesh -I../../itaps -I../../itaps -I../../itaps/imesh -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -O2 -DNDEBUG -MT point_in_elem.o -MD -MP -MF .deps/point_in_elem.Tpo -c -o point_in_elem.o point_in_elem.cpp
mv -f .deps/point_in_elem.Tpo .deps/point_in_elem.Po
make[4]: *** No rule to make target `../../itaps/imesh/libiMesh.la', needed by `point_in_elem'.  Stop.

sincerely,
 -The Fathomatic