[MOAB-dev] MOAB check for *AMD64* failed.

[Nightly Test]

/bin/sh ./config.status --recheck
running CONFIG_SHELL=/bin/sh /bin/sh ../src/configure  --enable-debug --enable-release --with-babel=/opt/babel-0.10.10-64-c2 --with-cgm=/home/jason/cgm/test/cubit QTDIR=/usr/share/qt3  --no-create --no-recursion
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for a sed that does not truncate output... /bin/sed
checking for style of include used by make... GNU
checking for cc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking dependency style of cc... gcc3
checking how to run the C preprocessor... cc -E
checking for CC... no
checking for aCC... no
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checking for xlC_r... no
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checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for known C compilers... GNU
checking for known compiler/OS combinations... GNU:x86_64
checking for known c++ compilers... GNU
checking for known compiler/OS combinations... GNU:x86_64
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognize dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
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checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... c++ -E
checking the maximum length of command line arguments... 98304
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC
checking if cc PIC flag -fPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by c++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC
checking if c++ PIC flag -fPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
(cached) (cached) checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
(cached) (cached) checking how to hardcode library paths into programs... immediate
checking for gunzip... gunzip -c
checking for gzip... (cached) gunzip -c
checking for zcat... (cached) gunzip -c
checking if C++ compiler supports template class specialization... yes
checking if C++ compiler supports template function specialization... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lgfortranbegin -lgfortran -lm
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for inttypes.h... (cached) yes
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checking stddef.h usability... yes
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checking valgrind/memcheck.h usability... yes
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checking for C++ unordered_map... std::tr1
checking for deflate in -lz... yes
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checking if HDF5 support is enabled... yes
checking hdf5.h usability... yes
checking hdf5.h presence... yes
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checking strstream.h usability... no
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checking strstream usability... yes
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checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
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checking for netcdf_c++ library... yes
checking if mbconvert is to be built... yes
checking if hexmodops is to be built... yes
checking if mbchaco is to be built... no
checking if mbperf is to be built... yes
checking if qvdual is to be built... no
checking if mbsize is to be built... yes
checking if mbskin is to be built... yes
checking if mbtagprop is to be built... yes
checking if mcnpmit is to be built... no
checking if mbcoupler is to be built... no
checking if spheredecomp is to be built... yes
checking if mbsurfplot is to be built... yes
checking if mbzoltan is to be built... no
checking if dagmc is to be built... yes
checking if gsets is to be built... yes
checking if iMesh support is to be built... yes
checking for /home/jason/cgm/test/cubit/lib/cgm.make... no
checking for /home/jason/cgm/test/cubit/cgm.make... yes
checking Checking for GeometryQueryTool::ray_fire(RefFace*,...)... no
checking for /opt/babel-0.10.10-64-c2/bin/babel... yes
configure: creating ./config.status
C:   cc  -Wall -pipe -pedantic -g  -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
C++: c++  -Wall -pipe -pedantic -g  -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
Fortran: gfortran -g -O2 -g
 /bin/sh ./config.status
config.status: creating Makefile
config.status: creating moab.make
config.status: creating testdir.h
config.status: creating parallel/Makefile
config.status: creating mhdf/Makefile
config.status: creating test/Makefile
config.status: creating test/h5file/Makefile
config.status: creating test/dual/Makefile
config.status: creating test/obb/Makefile
config.status: creating test/perf/Makefile
config.status: creating tools/Makefile
config.status: creating tools/iMesh/Makefile
config.status: creating tools/iMesh/iMesh-Defs.inc
config.status: creating tools/iMesh/SIDL/iMesh-SIDL-Defs.inc
config.status: creating tools/iMesh/SIDL/Makefile
config.status: creating tools/iMesh/SIDL/common.make
config.status: creating tools/mbperf/Makefile
config.status: creating tools/mbchaco/Makefile
config.status: creating tools/mbcoupler/Makefile
config.status: creating tools/mbzoltan/Config.moab
config.status: creating tools/mbzoltan/Makefile
config.status: creating tools/mcnpmit/Makefile
config.status: creating tools/qvdual/Makefile
config.status: creating tools/dagmc/Makefile
config.status: creating tools/dagmc/dagmc.make
config.status: creating doc/Makefile
config.status: creating doxygen/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: creating MBVersion.h
config.status: MBVersion.h is unchanged
config.status: creating MBEntityHandle.h
config.status: MBEntityHandle.h is unchanged
config.status: creating MBCN_FCDefs.h
config.status: MBCN_FCDefs.h is unchanged
config.status: executing depfiles commands
make  all-recursive
make[1]: Entering directory `/home/jason/moab/test/AMD64'
Making all in mhdf
make[2]: Entering directory `/home/jason/moab/test/AMD64/mhdf'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/jason/moab/test/AMD64/mhdf'
Making all in .
make[2]: Entering directory `/home/jason/moab/test/AMD64'
make[2]: Leaving directory `/home/jason/moab/test/AMD64'
Making all in test
make[2]: Entering directory `/home/jason/moab/test/AMD64/test'
Making all in dual
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual'
Making all in h5file
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file'
Making all in obb
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb'
Making all in perf
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/perf'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/perf'
make[3]: Entering directory `/home/jason/moab/test/AMD64/test'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test'
make[2]: Leaving directory `/home/jason/moab/test/AMD64/test'
Making all in tools
make[2]: Entering directory `/home/jason/moab/test/AMD64/tools'
Making all in iMesh
make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh'
make  all-recursive
make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh'
Making all in .
make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh'
make[5]: Nothing to be done for `all-am'.
make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh'
Making all in SIDL
make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL'
if test "xyes" = "xyes"; then \
	  (cd mserver && make -f ../../../../../src/tools/iMesh/SIDL/mserver.make all) && \
	  (cd Cclient && make -f ../../../../../src/tools/iMesh/SIDL/Cclient.make all) && \
	  (cd Fclient && make -f ../../../../../src/tools/iMesh/SIDL/Fclient.make all) ; \
	fi
make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/mserver'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/mserver'
make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Cclient'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Cclient'
make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Fclient'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Fclient'
make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL'
make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh'
make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh'
Making all in mbperf
make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/mbperf'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/mbperf'
Making all in dagmc
make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/dagmc'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/dagmc'
make[3]: Entering directory `/home/jason/moab/test/AMD64/tools'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools'
make[2]: Leaving directory `/home/jason/moab/test/AMD64/tools'
Making all in doc
make[2]: Entering directory `/home/jason/moab/test/AMD64/doc'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/jason/moab/test/AMD64/doc'
Making all in doxygen
make[2]: Entering directory `/home/jason/moab/test/AMD64/doxygen'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/jason/moab/test/AMD64/doxygen'
make[1]: Leaving directory `/home/jason/moab/test/AMD64'
Making check in mhdf
make[1]: Entering directory `/home/jason/moab/test/AMD64/mhdf'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/home/jason/moab/test/AMD64/mhdf'
Making check in .
make[1]: Entering directory `/home/jason/moab/test/AMD64'
make  moab_test homxform_test scdseq_test tqdcfr test_adj seq_man_test geom_util_test xform_test obb_test vtk_test adaptive_kd_tree_tests bsp_tree_test file_options_test kd_tree_test var_len_test var_len_test_no_template tag_test mesh_set_test cub_file_test exodus_test mbcn_test kd_tree_tool kd_tree_time
make[2]: Entering directory `/home/jason/moab/test/AMD64'
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include   -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -DTEST_TQDCFR -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -MT tqdcfr-Tqdcfr.o -MD -MP -MF .deps/tqdcfr-Tqdcfr.Tpo -c -o tqdcfr-Tqdcfr.o `test -f 'Tqdcfr.cpp' || echo '../src/'`Tqdcfr.cpp
make[2]: `file_options_test' is up to date.
make[2]: `var_len_test' is up to date.
make[2]: `var_len_test_no_template' is up to date.
make[2]: `mbcn_test' is up to date.
mv -f .deps/tqdcfr-Tqdcfr.Tpo .deps/tqdcfr-Tqdcfr.Po
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include   -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src  -Wall -pipe -pedantic -g -MT MBTest.o -MD -MP -MF .deps/MBTest.Tpo -c -o MBTest.o ../src/MBTest.cpp
make[2]: `homxform_test' is up to date.
make[2]: `scdseq_test' is up to date.
make[2]: `test_adj' is up to date.
make[2]: `seq_man_test' is up to date.
make[2]: `geom_util_test' is up to date.
make[2]: `xform_test' is up to date.
make[2]: `obb_test' is up to date.
make[2]: `vtk_test' is up to date.
make[2]: `adaptive_kd_tree_tests' is up to date.
make[2]: `bsp_tree_test' is up to date.
make[2]: `kd_tree_test' is up to date.
make[2]: `tag_test' is up to date.
make[2]: `mesh_set_test' is up to date.
make[2]: `cub_file_test' is up to date.
make[2]: `exodus_test' is up to date.
make[2]: `kd_tree_tool' is up to date.
make[2]: `kd_tree_time' is up to date.
/bin/sh ./libtool --tag=CXX   --mode=link c++ -DTEST_TQDCFR -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g   -o tqdcfr tqdcfr-Tqdcfr.o ./libMOAB.la -lm
c++ -DTEST_TQDCFR -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -o tqdcfr tqdcfr-Tqdcfr.o  ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm  
mv -f .deps/MBTest.Tpo .deps/MBTest.Po
/bin/sh ./libtool --tag=CXX   --mode=link c++  -Wall -pipe -pedantic -g   -o moab_test MBTest.o ./libMOAB.la -lm
c++ -Wall -pipe -pedantic -g -o moab_test MBTest.o  ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm  
make[2]: Leaving directory `/home/jason/moab/test/AMD64'
make  check-TESTS
make[2]: Entering directory `/home/jason/moab/test/AMD64'
Size of mConnMap = 10512
Size of mUpConnMap = 59904
Size of MBCN = 1


MB TEST PROGRAM:

   mb_adjacent_vertex_test: Success
   mb_adjacencies_test: Success
   mb_upward_adjacencies_test: Success
   mb_vertex_coordinate_test: Success
   mb_vertex_tag_test: Success
   mb_bar_connectivity_test: Success
   mb_tri_connectivity_test: Success
   mb_quad_connectivity_test: Success
   mb_tet_connectivity_test: Success
   mb_temporary_test: Success
   mb_hex_connectivity_test: Success
   mb_mesh_sets_set_test: Success
   mb_mesh_sets_list_test: Success
   mb_mesh_set_parent_child_test: Success
   mb_mesh_set_set_appends: Success
   mb_mesh_set_list_appends: Success
   mb_mesh_set_root_appends: Success
   mb_tags_test: Success
   mb_dense_tag_test: Success
   mb_sparse_tag_test: Success
   mb_write_mesh_test: Success
   mb_delete_mesh_test: Success
   mb_meshset_tracking_test: Success
   mb_higher_order_test: Success
   mb_bit_tags_test: Success
   mb_entity_conversion_test: Success
   mb_forced_adjacencies_test: Success
   mb_canon_number_test: Success
   mb_poly_test: Success
   mb_range_test: Success
   mb_topo_util_test: Success
   mb_split_test: Success
   mb_range_seq_intersect_test: Success
   mb_poly_adjacency_test: Success
   mb_memory_use_test: Success
   mb_merge_test: ---Starting Merge Tests---

---Testing:"test/cell1.gen"---
Loaded test/cell1.gen
---Testing:"test/cell2.gen"---
Loaded test/cell2.gen
num hexes = 28
fl = 68 rl = 0
nodes.size() = 72
---Success---

coin_nodes.size() = 13
TIME: 1226.48 seconds.
Success
   mb_stress_test:     Beginning Stress Test . . .

        Reading elements
        Read 256000 entities in 12.59 seconds
        at 20333.6 elements per second.

        Transforming and copying elements
        Transformed and created 256000 entities in 103.31 seconds

        Creating meshset
        Created meshset with 512000 entities in 0 seconds

        Writing 512K element file . . .
        Wrote file with 512000 entities in 141.73 seconds
        Total time: 257.65 seconds.
Success

MB TEST SUMMARY: 
   Number Tests:           37
   Number Successful:      37
   Number Failed:          0

PASS: moab_test
All tests passed.
PASS: homxform_test
All tests passed.
PASS: scdseq_test
Usage: tqdcfr <cub_file_name>
Success.
Success.
PASS: tqdcfr
PASS: test_adj
Running test_basic ...
Running test_lower_bound ...
Running test_upper_bound ...
Running test_find ...
Running test_get_entities ...
Running test_insert_sequence_merge ...
Running test_insert_sequence_nomerge ...
Running test_remove_sequence ...
Running test_replace_subsequence ...
Running test_erase ...
Running test_find_free_handle ...
Running test_find_free_sequence ...
Running test_is_free_sequence ...
Running regression_svn1952 ...
Running regression_svn1958 ...
Running regression_svn1960 ...
ALL TESTS PASSED
PASS: seq_man_test
Running test_box_plane_overlap ...
Running test_box_linear_elem_overlap_tri ...
Running test_box_linear_elem_overlap_tet ...
Running test_box_linear_elem_overlap_hex ...
Running test_box_tri_overlap ...
Running test_box_tet_overlap ...
Running test_box_hex_overlap ...
Running test_ray_tri_intersect ...
Running test_closest_location_on_tri ...
Running test_closest_location_on_polygon ...
Running test_segment_box_intersect ...
Running test_closest_location_on_box ...
PASS: geom_util_test
PASS: xform_test
PASS: obb_test
Testing edge2...
Testing edge3...
Testing tri3...
Testing tri6...
Testing quad4...
Testing quad8...
Testing polygon...
Testing tet4...
Testing tet10...
Testing hex8...
Testing hex20...
Testing wedge...
Testing pyramid...
Testing structured_points_2d...
Testing structured_grid_2d...
Testing rectilinear_grid_2d...
Testing structured_points_3d...
Testing structured_grid_3d...
Testing rectilinear_grid_3d...
Testing scalar_attrib_1_bit...
Testing scalar_attrib_1_uchar...
Testing scalar_attrib_1_char...
Testing scalar_attrib_1_ushort...
Testing scalar_attrib_1_short...
Testing scalar_attrib_1_uint...
Testing scalar_attrib_1_int...
Testing scalar_attrib_1_ulong...
Testing scalar_attrib_1_long...
Testing scalar_attrib_1_float...
Testing scalar_attrib_1_double...
Testing scalar_attrib_4_bit...
Testing scalar_attrib_4_uchar...
Testing scalar_attrib_4_char...
Testing scalar_attrib_4_ushort...
Testing scalar_attrib_4_short...
Testing scalar_attrib_4_uint...
Testing scalar_attrib_4_int...
Testing scalar_attrib_4_ulong...
Testing scalar_attrib_4_long...
Testing scalar_attrib_4_float...
Testing scalar_attrib_4_double...
Testing vector_attrib_bit...
Testing vector_attrib_uchar...
Testing vector_attrib_char...
Testing vector_attrib_ushort...
Testing vector_attrib_short...
Testing vector_attrib_uint...
Testing vector_attrib_int...
Testing vector_attrib_ulong...
Testing vector_attrib_long...
Testing vector_attrib_float...
Testing vector_attrib_double...
Testing tensor_attrib_uchar...
Testing tensor_attrib_char...
Testing tensor_attrib_ushort...
Testing tensor_attrib_short...
Testing tensor_attrib_uint...
Testing tensor_attrib_int...
Testing tensor_attrib_ulong...
Testing tensor_attrib_long...
Testing tensor_attrib_float...
Testing tensor_attrib_double...
Testing subset...


63 tests passed

PASS: vtk_test
PASS: adaptive_kd_tree_tests
Running test_iterator ...
Running test_box_iterator ...
Running test_tree_create ...
Running test_box_tree_create ...
Running test_leaf_containing_point_bounded_tree ...
Running test_leaf_containing_point_unbounded_tree ...
Running test_merge_leaf ...
PASS: bsp_tree_test
PASS: file_options_test
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 thread 67385840.  Back trace follows.
  #000: ../../../src/H5D.c line 1169 in H5Dopen(): not found
    major(15): Dataset interface
    minor(48): Object not found
  #001: ../../../src/H5G.c line 1783 in H5G_find(): object not found
    major(10): Symbol table layer
    minor(48): Object not found
  #002: ../../../src/H5Gtraverse.c line 395 in H5G_namei(): component not found
    major(10): Symbol table layer
    minor(48): Object not found
  #003: ../../../src/H5Gstab.c line 161 in H5G_stab_find(): not found
    major(10): Symbol table layer
    minor(48): Object not found
  #004: ../../../src/H5Gnode.c line 954 in H5G_node_found(): not found
    major(10): Symbol table layer
    minor(48): Object not found
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 thread 67385840.  Back trace follows.
  #000: ../../../src/H5D.c line 1169 in H5Dopen(): not found
    major(15): Dataset interface
    minor(48): Object not found
  #001: ../../../src/H5G.c line 1783 in H5G_find(): object not found
    major(10): Symbol table layer
    minor(48): Object not found
  #002: ../../../src/H5Gtraverse.c line 395 in H5G_namei(): component not found
    major(10): Symbol table layer
    minor(48): Object not found
  #003: ../../../src/H5Gstab.c line 161 in H5G_stab_find(): not found
    major(10): Symbol table layer
    minor(48): Object not found
  #004: ../../../src/H5Gnode.c line 954 in H5G_node_found(): not found
    major(10): Symbol table layer
    minor(48): Object not found
PASS: kd_tree_test
Running test_valid_struct ...
Running test_inline ...
Running test_non_inline ...
Running test_resize_ii ...
Running test_resize_in ...
Running test_resize_ni ...
Running test_resize_nn ...
PASS: var_len_test
Running test_valid_struct ...
Running test_inline ...
Running test_non_inline ...
Running test_resize_ii ...
Running test_resize_in ...
Running test_resize_ni ...
Running test_resize_nn ...
PASS: var_len_test_no_template
Running test_create_tag ...
Running test_invalid_tag_size ...
Running test_get_set_sparse_int ...
Running test_get_set_dense_int ...
Running test_get_set_dense_double ...
Running test_get_set_bit ...
Running test_get_by_tag ...
Running test_get_by_tag_value ...
Running test_mesh_value ...
Running test_get_pointers_sparse ...
Running test_get_pointers_dense ...
Running test_set_pointers_sparse ...
Running test_set_pointers_dense ...
Running test_get_entity_tags ...
Running test_delete_sparse_tag ...
Running test_delete_dense_tag ...
Running test_delete_mesh_tag ...
Running test_delete_sparse_data ...
Running test_delete_dense_data ...
Running test_delete_bit_data ...
Running test_create_variable_length_tag ...
Running test_get_set_variable_length_sparse ...
Running test_get_set_variable_length_dense ...
Running test_get_set_variable_length_mesh ...
Running regression_one_entity_by_var_tag ...
Running regression_tag_on_nonexistent_entity ...
PASS: tag_test
Running test_add_entities_ordered ...
Running test_add_entities_set ...
Running test_add_entities_ordered_tracking ...
Running test_add_entities_set_tracking ...
Running test_remove_entities_ordered ...
Running test_remove_entities_set ...
Running test_remove_entities_ordered_tracking ...
Running test_remove_entities_set_tracking ...
Running test_entities_by_type_ordered ...
Running test_entities_by_type_set ...
Running test_entities_by_dim_ordered ...
Running test_entities_by_dim_set ...
Running test_subtract_set_set ...
Running test_subtract_set_ordered ...
Running test_subtract_ordered_set ...
Running test_subtract_ordered_ordered ...
Running test_subtract_set_set_tracking ...
Running test_subtract_set_ordered_tracking ...
Running test_subtract_ordered_set_tracking ...
Running test_subtract_ordered_ordered_tracking ...
Running test_itersect_set_set ...
Running test_itersect_set_ordered ...
Running test_itersect_ordered_set ...
Running test_itersect_ordered_ordered ...
Running test_itersect_set_set_tracking ...
Running test_itersect_set_ordered_tracking ...
Running test_itersect_ordered_set_tracking ...
Running test_itersect_ordered_ordered_tracking ...
Running test_unite_set_set ...
Running test_unite_set_ordered ...
Running test_unite_ordered_set ...
Running test_unite_ordered_ordered ...
Running test_unite_set_set_tracking ...
Running test_unite_set_ordered_tracking ...
Running test_unite_ordered_set_tracking ...
Running test_unite_ordered_ordered_tracking ...
Running test_contains_entities_ordered ...
Running test_contains_entities_set ...
Running test_clear_ordered ...
Running test_clear_set ...
Running test_clear_ordered_tracking ...
Running test_clear_set_tracking ...
ALL TESTS PASSED
PASS: mesh_set_test
Running test_vertices ...
Running test_edges ...
Running test_quads ...
Running test_hexes ...
Running test_geometric_topology ...
Running test_geometric_sets ...
Running test_blocks ...
Running test_side_sets ...
Running test_node_sets ...
Running test_file_set ...
Running test_tri6 ...
Running test_tri7 ...
Running test_quad5 ...
Running test_quad8 ...
Running test_quad9 ...
Running test_tet8 ...
Running test_tet10 ...
Running test_tet14 ...
Running test_hex9 ...
Running test_hex20 ...
Running test_hex27 ...
Running test_multiple_files ...
PASS: cub_file_test
Running test_tri6 ...
Running test_tri7 ...
Running test_quad5 ...
Running test_quad8 ...
Running test_quad9 ...
Running test_tet8 ...
Running test_tet10 ...
Running test_tet14 ...
Running test_hex9 ...
Running test_hex20 ...
Running test_hex27 ...
PASS: exodus_test
Running test_dimension_pair ...
Running test_type_names ...
Running test_dimension ...
Running test_vertices_per_entity ...
Running test_num_sub_entities ...
Running test_sub_entity_type_vtx ...
Running test_sub_entity_type_edge ...
Running test_sub_entity_type_tri ...
Running test_sub_entity_type_quad ...
Running test_sub_entity_type_tet ...
Running test_sub_entity_type_pyr ...
Running test_sub_entity_type_pri ...
Running test_sub_entity_type_knife ...
Running test_sub_entity_type_hex ...
Running test_sub_entity_indices_vtx ...
Running test_sub_entity_indices_edge ...
Running test_sub_entity_indices_tri ...
Running test_sub_entity_indices_quad ...
Running test_sub_entity_indices_tet ...
Running test_sub_entity_indices_pyr ...
Running test_sub_entity_indices_pri ...
Running test_sub_entity_indices_hex ...
Running test_side_number_tri ...
Running test_side_number_quad ...
Running test_side_number_tet ...
Running test_side_number_pyr ...
Running test_side_number_pri ...
Running test_side_number_hex ...
Running test_opposite_side_tri ...
Running test_opposite_side_quad ...
Running test_opposite_side_tet ...
Running test_opposite_side_hex ...
Running test_has_mid_nodes_edge ...
Running test_has_mid_nodes_tri ...
Running test_has_mid_nodes_quad ...
Running test_has_mid_nodes_tet ...
Running test_has_mid_nodes_pyr ...
Running test_has_mid_nodes_pri ...
Running test_has_mid_nodes_knife ...
Running test_has_mid_nodes_hex ...
Running test_sub_entity_nodes_tri_edges ...
Running test_sub_entity_nodes_quad_edges ...
Running test_sub_entity_nodes_tet_edges ...
Running test_sub_entity_nodes_tet_faces ...
Running test_sub_entity_nodes_pyr_edges ...
Running test_sub_entity_nodes_pyr_faces ...
Running test_sub_entity_nodes_pri_edges ...
Running test_sub_entity_nodes_pri_faces ...
Running test_sub_entity_nodes_kni_edges ...
Running test_sub_entity_nodes_kni_faces ...
Running test_sub_entity_nodes_hex_edges ...
Running test_sub_entity_nodes_hex_faces ...
Running test_ho_node_parent ...
Running test_ho_node_index ...
PASS: mbcn_test
===================
All 21 tests passed
===================
make[2]: Leaving directory `/home/jason/moab/test/AMD64'
make[1]: Leaving directory `/home/jason/moab/test/AMD64'
Making check in test
make[1]: Entering directory `/home/jason/moab/test/AMD64/test'
Making check in dual
make[2]: Entering directory `/home/jason/moab/test/AMD64/test/dual'
make  dual_test
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual'
make[3]: `dual_test' is up to date.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual'
make  check-TESTS
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual'
Usage: dual_test <mesh_file_name>
PASS: dual_test
==================
All 1 tests passed
==================
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual'
make[2]: Leaving directory `/home/jason/moab/test/AMD64/test/dual'
Making check in h5file
make[2]: Entering directory `/home/jason/moab/test/AMD64/test/h5file'
make  h5test h5legacy h5varlen h5sets_test h5regression
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file'
make[3]: `h5test' is up to date.
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../..  -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -g -MT h5legacy.o -MD -MP -MF .deps/h5legacy.Tpo -c -o h5legacy.o ../../../src/test/h5file/h5legacy.cpp
make[3]: `h5varlen' is up to date.
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../..  -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -g -MT h5sets_test.o -MD -MP -MF .deps/h5sets_test.Tpo -c -o h5sets_test.o ../../../src/test/h5file/h5sets_test.cpp
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../..  -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -g -MT h5regression.o -MD -MP -MF .deps/h5regression.Tpo -c -o h5regression.o ../../../src/test/h5file/h5regression.cpp
mv -f .deps/h5regression.Tpo .deps/h5regression.Po
/bin/sh ../../libtool --tag=CXX   --mode=link c++  -Wall -pipe -pedantic -g   -o h5regression h5regression.o ../../libMOAB.la -lm
mv -f .deps/h5sets_test.Tpo .deps/h5sets_test.Po
/bin/sh ../../libtool --tag=CXX   --mode=link c++  -Wall -pipe -pedantic -g   -o h5sets_test h5sets_test.o ../../libMOAB.la -lm
mv -f .deps/h5legacy.Tpo .deps/h5legacy.Po
/bin/sh ../../libtool --tag=CXX   --mode=link c++  -Wall -pipe -pedantic -g   -o h5legacy h5legacy.o ../../libMOAB.la -lm
c++ -Wall -pipe -pedantic -g -o h5regression h5regression.o  ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm  
c++ -Wall -pipe -pedantic -g -o h5sets_test h5sets_test.o  ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm  
c++ -Wall -pipe -pedantic -g -o h5legacy h5legacy.o  ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm  
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file'
make  check-TESTS
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file'
creating... writing... reading... comparing... success!
writing... clearing db... reading... comparing... success!
cleaning up... done.
PASS: h5test
Running test_moab_v3_poly_format ...
PASS: h5legacy
Running test_var_length_no_data ...
Running test_var_length_data ...
Running test_var_length_big_data ...
Running test_var_length_opaque ...
Running test_var_length_mesh_data ...
Running test_var_length_default_data ...
Running test_var_length_mesh_opaque ...
Running test_var_length_default_opaque ...
Running test_var_length_handle_tag ...
Running test_var_length_data_big ...
PASS: h5varlen
Running test_ranged_set_with_holes ...
Running test_file_set ...
PASS: h5sets_test
Running test_write_invalid_elem ...
PASS: h5regression
==================
All 5 tests passed
==================
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file'
make[2]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file'
Making check in obb
make[2]: Entering directory `/home/jason/moab/test/AMD64/test/obb'
make  obb_test obb_time obb_tree_tool
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb'
c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/obb -I../.. -I../../../src -I../..  -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -g -MT obb_test.o -MD -MP -MF .deps/obb_test.Tpo -c -o obb_test.o ../../../src/test/obb/obb_test.cpp
make[3]: `obb_time' is up to date.
make[3]: `obb_tree_tool' is up to date.
mv -f .deps/obb_test.Tpo .deps/obb_test.Po
/bin/sh ../../libtool --tag=CXX   --mode=link c++  -Wall -pipe -pedantic -g   -o obb_test obb_test.o ../../libMOAB.la -lm
c++ -Wall -pipe -pedantic -g -o obb_test obb_test.o  ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm  
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb'
make  check-TESTS
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb'
MOAB 3.99 (Alpha)
No file(s) specified.
Using default file "../../../src/test/3k-tri-sphere.vtk"
Using default file "../../../src/test/3k-tri-cube.h5m"
../../../src/test/3k-tri-sphere.vtk
------
Building tree from 2970 2D elements

No errors detected.
../../../src/test/3k-tri-cube.h5m
------
Building tree from 6 surfaces
Built tree from 6 surfaces (2934 elements)

No errors detected.
PASS: obb_test
==================
All 1 tests passed
==================
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb'
make[2]: Leaving directory `/home/jason/moab/test/AMD64/test/obb'
Making check in perf
make[2]: Entering directory `/home/jason/moab/test/AMD64/test/perf'
make  perf seqperf adj_time
make[3]: Entering directory `/home/jason/moab/test/AMD64/test/perf'
make[3]: `perf' is up to date.
make[3]: `seqperf' is up to date.
make[3]: `adj_time' is up to date.
make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/perf'
make[2]: Leaving directory `/home/jason/moab/test/AMD64/test/perf'
make[2]: Entering directory `/home/jason/moab/test/AMD64/test'
make[2]: Nothing to be done for `check-am'.
make[2]: Leaving directory `/home/jason/moab/test/AMD64/test'
make[1]: Leaving directory `/home/jason/moab/test/AMD64/test'
Making check in tools
make[1]: Entering directory `/home/jason/moab/test/AMD64/tools'
Making check in iMesh
make[2]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh'
make  check-recursive
make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh'
Making check in .
make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh'
make  testc_cbind 
make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh'
make[5]: `testc_cbind' is up to date.
make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh'
make  check-TESTS
make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh'
Usage: ./testc_cbind <mesh_filename>
  No file specified.  Defaulting to: ../../../src/tools/iMesh/brick.vtk


TSTT TEST PROGRAM:

   load_mesh: Success

   topology_adjacency_test: Success

   entity_connectivity_test: Success

   vertex_coordinates_test: Success

   topology_dimension_test: Success

   entity_sets_test: Success

   vertex_tag_test: Success

   entityset_tag_test: Success

   mesh_tag_test: Success


TSTT TEST SUMMARY: 
   Number Tests:           9
   Number Successful:      9
   Number Not Implemented: 0
   Number Failed:          0



PASS: testc_cbind
==================
All 1 tests passed
==================
make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh'
make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh'
Making check in SIDL
make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL'
make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL'
/bin/sh ../../../libtool --tag=CXX --mode=compile c++   -I/opt/babel-0.10.10-64-c2/include -Imserver  -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  -Wall -pipe -pedantic -g -c -o testcxx.lo ../../../../src/tools/iMesh/SIDL/testcxx.cpp
if test "xyes" = "xyes"; then \
	  (cd mserver && make -f ../../../../../src/tools/iMesh/SIDL/mserver.make all) && \
	  (cd Cclient && make -f ../../../../../src/tools/iMesh/SIDL/Cclient.make all) && \
	  (cd Fclient && make -f ../../../../../src/tools/iMesh/SIDL/Fclient.make all) ; \
	fi
make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/mserver'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/mserver'
make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Cclient'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Cclient'
make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Fclient'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Fclient'
 c++ -I/opt/babel-0.10.10-64-c2/include -Imserver -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -c ../../../../src/tools/iMesh/SIDL/testcxx.cpp -o testcxx.o
../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool entity_connectivity_test(iMesh::Mesh&)’:
../../../../src/tools/iMesh/SIDL/testcxx.cpp:429: error: ‘class iMesh::Mesh’ has no member named ‘getVtxCoordIndex’
../../../../src/tools/iMesh/SIDL/testcxx.cpp:470: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(NULL, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’
mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&)
../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool entity_sets_subtest(iMesh::Mesh&, bool, int)’:
../../../../src/tools/iMesh/SIDL/testcxx.cpp:503: error: ISO C++ forbids variable length array ‘es_array’
../../../../src/tools/iMesh/SIDL/testcxx.cpp:504: error: ISO C++ forbids variable length array ‘number_array’
../../../../src/tools/iMesh/SIDL/testcxx.cpp:1046: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(NULL, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’
mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&)
../../../../src/tools/iMesh/SIDL/testcxx.cpp:1096: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(void*&, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’
mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&)
../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool vertex_coordinates_test(iMesh::Mesh&)’:
../../../../src/tools/iMesh/SIDL/testcxx.cpp:1180: error: ‘class iMesh::Mesh’ has no member named ‘getAllVtxCoords’
make[5]: *** [testcxx.lo] Error 1
make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL'
make[4]: *** [check] Error 2
make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL'
make[3]: *** [check-recursive] Error 1
make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh'
make[2]: *** [check] Error 2
make[2]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/home/jason/moab/test/AMD64/tools'
make: *** [check-recursive] Error 1