[MOAB-dev] MOAB check for x86 failed.

Mon Mar 31 01:34:27 CDT 2008

==26429== Memcheck, a memory error detector.
==26429== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26429== Using LibVEX rev 1804, a library for dynamic binary translation.
==26429== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26429== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26429== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26429== For more details, rerun with: -v
==26429== 
==26429== Syscall param write(buf) points to uninitialised byte(s)
==26429==    at 0x4A26B6E: __write_nocancel (in /emul/ia32-linux/lib/libc-2.7.so)
==26429==    by 0x474936F: H5FD_sec2_write (in /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so.0.0.0)
==26429==  Address 0x8ce7ac0 is 440 bytes inside a block of size 1,864 alloc'd
==26429==    at 0x46DCAB8: malloc (vg_replace_malloc.c:207)
==26429==    by 0x474DB05: H5FL_malloc (in /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so.0.0.0)
==26429== 
==26429== ERROR SUMMARY: 18 errors from 1 contexts (suppressed: 19 from 1)
==26429== malloc/free: in use at exit: 51,900 bytes in 774 blocks.
==26429== malloc/free: 866,009 allocs, 865,235 frees, 299,194,747 bytes allocated.
==26429== For counts of detected errors, rerun with: -v
==26429== searching for pointers to 774 not-freed blocks.
==26429== checked 136,376 bytes.
==26429== 
==26429== LEAK SUMMARY:
==26429==    definitely lost: 51,884 bytes in 772 blocks.
==26429==      possibly lost: 0 bytes in 0 blocks.
==26429==    still reachable: 16 bytes in 2 blocks.
==26429==         suppressed: 0 bytes in 0 blocks.
==26429== Rerun with --leak-check=full to see details of leaked memory.
==26434== Memcheck, a memory error detector.
==26434== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26434== Using LibVEX rev 1804, a library for dynamic binary translation.
==26434== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26434== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26434== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26434== For more details, rerun with: -v
==26434== 
==26434== 
==26434== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26434== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26434== malloc/free: 0 allocs, 0 frees, 0 bytes allocated.
==26434== For counts of detected errors, rerun with: -v
==26434== All heap blocks were freed -- no leaks are possible.
==26437== Memcheck, a memory error detector.
==26437== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26437== Using LibVEX rev 1804, a library for dynamic binary translation.
==26437== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26437== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26437== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26437== For more details, rerun with: -v
==26437== 
==26437== 
==26437== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26437== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26437== malloc/free: 1,220 allocs, 1,220 frees, 73,867,505 bytes allocated.
==26437== For counts of detected errors, rerun with: -v
==26437== All heap blocks were freed -- no leaks are possible.
==26441== Memcheck, a memory error detector.
==26441== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26441== Using LibVEX rev 1804, a library for dynamic binary translation.
==26441== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26441== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26441== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26441== For more details, rerun with: -v
==26441== 
==26441== 
==26441== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26441== malloc/free: in use at exit: 6,882 bytes in 142 blocks.
==26441== malloc/free: 18,966 allocs, 18,824 frees, 1,861,872 bytes allocated.
==26441== For counts of detected errors, rerun with: -v
==26441== searching for pointers to 142 not-freed blocks.
==26441== checked 144,856 bytes.
==26441== 
==26441== LEAK SUMMARY:
==26441==    definitely lost: 6,178 bytes in 140 blocks.
==26441==      possibly lost: 0 bytes in 0 blocks.
==26441==    still reachable: 704 bytes in 2 blocks.
==26441==         suppressed: 0 bytes in 0 blocks.
==26441== Rerun with --leak-check=full to see details of leaked memory.
==26444== Memcheck, a memory error detector.
==26444== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26444== Using LibVEX rev 1804, a library for dynamic binary translation.
==26444== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26444== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26444== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26444== For more details, rerun with: -v
==26444== 
==26444== 
==26444== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26444== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26444== malloc/free: 998 allocs, 998 frees, 100,493 bytes allocated.
==26444== For counts of detected errors, rerun with: -v
==26444== All heap blocks were freed -- no leaks are possible.
==26447== Memcheck, a memory error detector.
==26447== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26447== Using LibVEX rev 1804, a library for dynamic binary translation.
==26447== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26447== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26447== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26447== For more details, rerun with: -v
==26447== 
==26447== 
==26447== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26447== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26447== malloc/free: 203 allocs, 203 frees, 3,792 bytes allocated.
==26447== For counts of detected errors, rerun with: -v
==26447== All heap blocks were freed -- no leaks are possible.
==26450== Memcheck, a memory error detector.
==26450== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26450== Using LibVEX rev 1804, a library for dynamic binary translation.
==26450== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26450== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26450== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26450== For more details, rerun with: -v
==26450== 
==26450== 
==26450== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26450== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26450== malloc/free: 0 allocs, 0 frees, 0 bytes allocated.
==26450== For counts of detected errors, rerun with: -v
==26450== All heap blocks were freed -- no leaks are possible.
==26453== Memcheck, a memory error detector.
==26453== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26453== Using LibVEX rev 1804, a library for dynamic binary translation.
==26453== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26453== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26453== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26453== For more details, rerun with: -v
==26453== 
==26453== 
==26453== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26453== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26453== malloc/free: 0 allocs, 0 frees, 0 bytes allocated.
==26453== For counts of detected errors, rerun with: -v
==26453== All heap blocks were freed -- no leaks are possible.
==26456== Memcheck, a memory error detector.
==26456== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26456== Using LibVEX rev 1804, a library for dynamic binary translation.
==26456== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26456== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26456== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26456== For more details, rerun with: -v
==26456== 
==26456== 
==26456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26456== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26456== malloc/free: 0 allocs, 0 frees, 0 bytes allocated.
==26456== For counts of detected errors, rerun with: -v
==26456== All heap blocks were freed -- no leaks are possible.
==26459== Memcheck, a memory error detector.
==26459== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26459== Using LibVEX rev 1804, a library for dynamic binary translation.
==26459== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26459== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26459== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26459== For more details, rerun with: -v
==26459== 
==26459== 
==26459== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26459== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26459== malloc/free: 1,208 allocs, 1,208 frees, 351,851 bytes allocated.
==26459== For counts of detected errors, rerun with: -v
==26459== All heap blocks were freed -- no leaks are possible.
==26462== Memcheck, a memory error detector.
==26462== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26462== Using LibVEX rev 1804, a library for dynamic binary translation.
==26462== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26462== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26462== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26462== For more details, rerun with: -v
==26462== 
==26462== 
==26462== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26462== malloc/free: in use at exit: 1,008 bytes in 2 blocks.
==26462== malloc/free: 25,579 allocs, 25,577 frees, 55,905,058 bytes allocated.
==26462== For counts of detected errors, rerun with: -v
==26462== searching for pointers to 2 not-freed blocks.
==26462== checked 136,864 bytes.
==26462== 
==26462== LEAK SUMMARY:
==26462==    definitely lost: 252 bytes in 1 blocks.
==26462==      possibly lost: 0 bytes in 0 blocks.
==26462==    still reachable: 756 bytes in 1 blocks.
==26462==         suppressed: 0 bytes in 0 blocks.
==26462== Rerun with --leak-check=full to see details of leaked memory.
==26465== Memcheck, a memory error detector.
==26465== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26465== Using LibVEX rev 1804, a library for dynamic binary translation.
==26465== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26465== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26465== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26465== For more details, rerun with: -v
==26465== 
==26465== 
==26465== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26465== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26465== malloc/free: 21,876 allocs, 21,876 frees, 3,878,856 bytes allocated.
==26465== For counts of detected errors, rerun with: -v
==26465== All heap blocks were freed -- no leaks are possible.
==26468== Memcheck, a memory error detector.
==26468== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26468== Using LibVEX rev 1804, a library for dynamic binary translation.
==26468== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26468== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26468== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26468== For more details, rerun with: -v
==26468== 
==26468== 
==26468== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 17 from 1)
==26468== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26468== malloc/free: 19 allocs, 19 frees, 509 bytes allocated.
==26468== For counts of detected errors, rerun with: -v
==26468== All heap blocks were freed -- no leaks are possible.
==26471== Memcheck, a memory error detector.
==26471== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26471== Using LibVEX rev 1804, a library for dynamic binary translation.
==26471== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26471== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26471== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26471== For more details, rerun with: -v
==26471== 
==26471== Syscall param write(buf) points to uninitialised byte(s)
==26471==    at 0x4A26B6E: __write_nocancel (in /emul/ia32-linux/lib/libc-2.7.so)
==26471==    by 0x474936F: H5FD_sec2_write (in /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so.0.0.0)
==26471==  Address 0x74a7dd8 is 440 bytes inside a block of size 1,864 alloc'd
==26471==    at 0x46DCAB8: malloc (vg_replace_malloc.c:207)
==26471==    by 0x474DB05: H5FL_malloc (in /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so.0.0.0)
HDF5-DIAG: Error detected in HDF5 library version: 1.6.5 thread 0.  Back trace follows.
  #000: H5D.c line 1146 in H5Dopen(): not found
    major(15): Dataset interface
    minor(48): Object not found
  #001: H5G.c line 2296 in H5G_find(): object not found
    major(10): Symbol table layer
    minor(48): Object not found
  #002: H5G.c line 1495 in H5G_namei(): component not found
    major(10): Symbol table layer
    minor(48): Object not found
  #003: H5Gstab.c line 164 in H5G_stab_find(): not found
    major(10): Symbol table layer
    minor(48): Object not found
  #004: H5Gnode.c line 975 in H5G_node_found(): not found
    major(10): Symbol table layer
    minor(48): Object not found
HDF5-DIAG: Error detected in HDF5 library version: 1.6.5 thread 0.  Back trace follows.
  #000: H5D.c line 1146 in H5Dopen(): not found
    major(15): Dataset interface
    minor(48): Object not found
  #001: H5G.c line 2296 in H5G_find(): object not found
    major(10): Symbol table layer
    minor(48): Object not found
  #002: H5G.c line 1495 in H5G_namei(): component not found
    major(10): Symbol table layer
    minor(48): Object not found
  #003: H5Gstab.c line 164 in H5G_stab_find(): not found
    major(10): Symbol table layer
    minor(48): Object not found
  #004: H5Gnode.c line 975 in H5G_node_found(): not found
    major(10): Symbol table layer
    minor(48): Object not found
==26471== 
==26471== ERROR SUMMARY: 13 errors from 1 contexts (suppressed: 19 from 1)
==26471== malloc/free: in use at exit: 16 bytes in 2 blocks.
==26471== malloc/free: 3,202 allocs, 3,200 frees, 316,118,461 bytes allocated.
==26471== For counts of detected errors, rerun with: -v
==26471== searching for pointers to 2 not-freed blocks.
==26471== checked 136,376 bytes.
==26471== 
==26471== LEAK SUMMARY:
==26471==    definitely lost: 0 bytes in 0 blocks.
==26471==      possibly lost: 0 bytes in 0 blocks.
==26471==    still reachable: 16 bytes in 2 blocks.
==26471==         suppressed: 0 bytes in 0 blocks.
==26471== Rerun with --leak-check=full to see details of leaked memory.
==26476== Memcheck, a memory error detector.
==26476== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26476== Using LibVEX rev 1804, a library for dynamic binary translation.
==26476== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26476== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26476== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26476== For more details, rerun with: -v
==26476== 
==26476== 
==26476== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 17 from 1)
==26476== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26476== malloc/free: 5 allocs, 5 frees, 48 bytes allocated.
==26476== For counts of detected errors, rerun with: -v
==26476== All heap blocks were freed -- no leaks are possible.
==26479== Memcheck, a memory error detector.
==26479== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26479== Using LibVEX rev 1804, a library for dynamic binary translation.
==26479== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26479== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26479== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26479== For more details, rerun with: -v
==26479== 
==26479== 
==26479== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 17 from 1)
==26479== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26479== malloc/free: 5 allocs, 5 frees, 48 bytes allocated.
==26479== For counts of detected errors, rerun with: -v
==26479== All heap blocks were freed -- no leaks are possible.
==26482== Memcheck, a memory error detector.
==26482== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al.
==26482== Using LibVEX rev 1804, a library for dynamic binary translation.
==26482== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP.
==26482== Using valgrind-3.3.0-Debian, a dynamic binary instrumentation framework.
==26482== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al.
==26482== For more details, rerun with: -v
==26482== 
==26482== 
==26482== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 1)
==26482== malloc/free: in use at exit: 0 bytes in 0 blocks.
==26482== malloc/free: 7,108 allocs, 7,108 frees, 8,183,089 bytes allocated.
==26482== For counts of detected errors, rerun with: -v
==26482== All heap blocks were freed -- no leaks are possible.
make[2]: *** [check-TESTS] Error 1
make[1]: *** [check-am] Error 2
make: *** [check-recursive] Error 1
dense ...
Running test_get_entity_tags ...
Running test_delete_sparse_tag ...
Running test_delete_dense_tag ...
Running test_delete_mesh_tag ...
Running test_delete_sparse_data ...
Running test_delete_dense_data ...
Running test_delete_bit_data ...
Running test_create_variable_length_tag ...
Running test_get_set_variable_length_sparse ...
Running test_get_set_variable_length_dense ...
Running test_get_set_variable_length_mesh ...
Running regression_one_entity_by_var_tag ...
PASS: tag_test
====================
2 of 17 tests failed
====================
make[2]: Leaving directory `/home/jason/moab/test/x86'
make[1]: Leaving directory `/home/jason/moab/test/x86'

[MOAB-dev] MOAB check for *x86* failed.

[MOAB-dev] MOAB check for x86 failed.