[MOAB-dev] MOAB check for *x86* failed.

[Nightly Test]

configure: WARNING: unknown Fortran name-mangling scheme
make[4]: *** No rule to make target `../../../../src/tools/iMesh/SIDL/iMeshS.sidl', needed by `mserver/babel.make'.  Stop.
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
sion
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for cc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking dependency style of cc... gcc3
checking how to run the C preprocessor... cc -E
checking for CC... no
checking for aCC... no
checking for cxx... no
checking for xlC_r... no
checking for xlC... no
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for known C compilers... GNU
checking for known compiler/OS combinations... GNU:x86_64
checking for known c++ compilers... GNU
checking for known compiler/OS combinations... GNU:x86_64
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... c++ -E
checking for g77... g77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g77 accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC
checking if cc PIC flag -fPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by c++... /usr/bin/ld -m elf_i386
checking if the linker (/usr/bin/ld -m elf_i386) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC
checking if c++ PIC flag -fPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking whether the c++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for g77 option to produce PIC... -fPIC
checking if g77 PIC flag -fPIC works... yes
checking if g77 static flag -static works... yes
checking if g77 supports -c -o file.o... yes
checking whether the g77 linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for gunzip... gunzip -c
checking for gzip... (cached) gunzip -c
checking for zcat... (cached) gunzip -c
checking if C++ compiler supports template specialization... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/x86_64-linux-gnu/4.3.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.1/../../.. -lgfortranbegin -lgfortran -lm
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... unknown
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for sys/types.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for size_t... yes
checking for ptrdiff_t... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking for deflate in -lz... yes
checking for SZ_Decompress in -lsz... no
checking if HDF5 support is enabled... yes
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5Fopen in -lhdf5... yes
checking if NetCDF support is enabled... yes
checking strstream.h usability... no
checking strstream.h presence... no
checking for strstream.h... no
checking sstream.h usability... no
checking sstream.h presence... no
checking for sstream.h... no
checking strstream usability... yes
checking strstream presence... yes
checking for strstream... yes
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking for netcdf.hh... yes
checking for netcdf_c++ library... yes
checking if mbconvert is to be built... yes
checking if hexmodops is to be built... yes
checking if mbchaco is to be built... no
checking if mbcoupler is to be built... no
checking if mbperf is to be built... yes
checking if qvdual is to be built... no
checking if mbsize is to be built... yes
checking if mbskin is to be built... yes
checking if mbtagprop is to be built... yes
checking if mcnpmit is to be built... yes
checking if spheredecomp is to be built... yes
checking if mbsurfplot is to be built... yes
checking if mbzoltan is to be built... no
checking if dagmc is to be built... yes
checking if iMesh support is to be built... yes
checking for /opt/babel-0.10.10-32-c2/bin/babel... yes
configure: creating ./config.status
C:   cc  -g -m32
C++: c++  -Wall -pipe -g -m32
 /bin/sh ./config.status
config.status: creating Makefile
config.status: creating moab.make
config.status: creating testdir.h
config.status: creating parallel/Makefile
config.status: creating mhdf/Makefile
config.status: creating test/Makefile
config.status: creating test/h5file/Makefile
config.status: creating test/dual/Makefile
config.status: creating test/obb/Makefile
config.status: creating test/perf/Makefile
config.status: creating tools/Makefile
config.status: creating tools/converter/Makefile
config.status: creating tools/hexmodops/Makefile
config.status: creating tools/iMesh/Makefile
config.status: creating tools/iMesh/iMesh-Defs.inc
config.status: creating tools/iMesh/SIDL/iMesh-SIDL-Defs.inc
config.status: creating tools/iMesh/SIDL/Makefile
config.status: creating tools/iMesh/SIDL/common.make
config.status: creating tools/mbperf/Makefile
config.status: creating tools/mbchaco/Makefile
config.status: creating tools/mbcoupler/Makefile
config.status: creating tools/mbzoltan/Config.moab
config.status: creating tools/mbzoltan/Makefile
config.status: creating tools/mcnpmit/Makefile
config.status: creating tools/qvdual/Makefile
config.status: creating tools/size/Makefile
config.status: creating tools/skin/Makefile
config.status: creating tools/tagprop/Makefile
config.status: creating tools/spheredecomp/Makefile
config.status: creating tools/surfplot/Makefile
config.status: creating tools/dagmc/Makefile
config.status: creating tools/dagmc/dagmc.make
config.status: creating doc/Makefile
config.status: creating doxygen/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: creating MBVersion.h
config.status: MBVersion.h is unchanged
config.status: creating MBEntityHandle.h
config.status: MBEntityHandle.h is unchanged
config.status: creating MBCN_FCDefs.h
config.status: MBCN_FCDefs.h is unchanged
config.status: executing depfiles commands
make  all-recursive
make[1]: Entering directory `/home/jason/moab/test/x86'
Making all in mhdf
make[2]: Entering directory `/home/jason/moab/test/x86/mhdf'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/jason/moab/test/x86/mhdf'
Making all in .
make[2]: Entering directory `/home/jason/moab/test/x86'
if /bin/sh ./libtool --tag=CXX --mode=compile c++ -DTEMPLATE_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I. -I. -I. -I. -I../src/mhdf/include  -I/opt/netcdf-3.6.1-32-c2/include  -I/opt/hdf5-1.6.5-32-c2/include    -Wall -pipe -g -m32 -MT MBGeomUtil.lo -MD -MP -MF ".deps/MBGeomUtil.Tpo" -c -o MBGeomUtil.lo ../src/MBGeomUtil.cpp; \
	then mv -f ".deps/MBGeomUtil.Tpo" ".deps/MBGeomUtil.Plo"; else rm -f ".deps/MBGeomUtil.Tpo"; exit 1; fi
 c++ -DTEMPLATE_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I. -I. -I. -I. -I../src/mhdf/include -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -Wall -pipe -g -m32 -MT MBGeomUtil.lo -MD -MP -MF .deps/MBGeomUtil.Tpo -c ../src/MBGeomUtil.cpp -o MBGeomUtil.o
/bin/sh ./libtool --tag=CXX --mode=link c++  -Wall -pipe -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib   -L/opt/hdf5-1.6.5-32-c2/lib  -lm -o libMOAB.la -rpath /usr/local/lib  AEntityFactory.lo DualTool.lo EntitySequence.lo ExoIIUtil.lo FileOptions.lo FileTokenizer.lo GeomTopoTool.lo HigherOrderFactory.lo HomXform.lo MBAdaptiveKDTree.lo MBAffineXform.lo MBAlloc.lo MBAxisBox.lo MBBits.lo MBBSPTree.lo MBCN.lo MBCartVect.lo MBHandleUtils.lo MBMatrix3.lo MBCore.lo MBFactory.lo MBGeomUtil.lo MBMeshSet.lo MBOrientedBox.lo MBOrientedBoxTreeTool.lo MBRange.lo MBRangeSeqIntersectIter.lo MBReadUtil.lo MBReaderWriterSet.lo MBSkinner.lo MBSysUtil.lo MBUtil.lo MBWriteUtil.lo MeshSetSequence.lo MeshTopoUtil.lo PolyElementSeq.lo ReadGmsh.lo ReadSTL.lo ReadVtk.lo ReadIDEAS.lo ScdElementData.lo ScdVertexData.lo SequenceData.lo SequenceManager.lo SparseTagSuperCollection.lo SparseTagCollection.lo StructuredElementSeq.lo TagInfo.lo TagServer.lo Tqdcfr.lo TypeSequenceManager.lo UnstructuredElemSeq.lo Ve!
 rtexSequence.lo VtkUtil.lo WriteAns.lo WriteGMV.lo WriteGmsh.lo WriteSTL.lo WriteTemplate.lo WriteVtk.lo ReadNCDF.lo WriteNCDF.lo WriteSLAC.lo ReadHDF5.lo WriteHDF5.lo -lnetcdf_c++ -lnetcdf -lhdf5 ./mhdf/libmhdf.la  -lm
rm -fr  .libs/libMOAB.a .libs/libMOAB.la .libs/libMOAB.lai
rm -fr .libs/libMOAB.lax
mkdir .libs/libMOAB.lax
rm -fr .libs/libMOAB.lax/libmhdf.a
mkdir .libs/libMOAB.lax/libmhdf.a
(cd .libs/libMOAB.lax/libmhdf.a && ar x /home/jason/moab/test/x86/./mhdf/.libs/libmhdf.a)
ar cru .libs/libMOAB.a  AEntityFactory.o DualTool.o EntitySequence.o ExoIIUtil.o FileOptions.o FileTokenizer.o GeomTopoTool.o HigherOrderFactory.o HomXform.o MBAdaptiveKDTree.o MBAffineXform.o MBAlloc.o MBAxisBox.o MBBits.o MBBSPTree.o MBCN.o MBCartVect.o MBHandleUtils.o MBMatrix3.o MBCore.o MBFactory.o MBGeomUtil.o MBMeshSet.o MBOrientedBox.o MBOrientedBoxTreeTool.o MBRange.o MBRangeSeqIntersectIter.o MBReadUtil.o MBReaderWriterSet.o MBSkinner.o MBSysUtil.o MBUtil.o MBWriteUtil.o MeshSetSequence.o MeshTopoUtil.o PolyElementSeq.o ReadGmsh.o ReadSTL.o ReadVtk.o ReadIDEAS.o ScdElementData.o ScdVertexData.o SequenceData.o SequenceManager.o SparseTagSuperCollection.o SparseTagCollection.o StructuredElementSeq.o TagInfo.o TagServer.o Tqdcfr.o TypeSequenceManager.o UnstructuredElemSeq.o VertexSequence.o VtkUtil.o WriteAns.o WriteGMV.o WriteGmsh.o WriteSTL.o WriteTemplate.o WriteVtk.o ReadNCDF.o WriteNCDF.o WriteSLAC.o ReadHDF5.o WriteHDF5.o  .libs/libMOAB.lax/libmhdf.a/adjacency.o!
  .libs/libMOAB.lax/libmhdf.a/file-handle.o .libs/libMOAB.lax/libmhdf.a/status.o .libs/libMOAB.lax/libmhdf.a/tags.o .libs/libMOAB.lax/libmhdf.a/file.o .libs/libMOAB.lax/libmhdf.a/nodes.o .libs/libMOAB.lax/libmhdf.a/sets.o .libs/libMOAB.lax/libmhdf.a/connectivity.o .libs/libMOAB.lax/libmhdf.a/util.o 
ranlib .libs/libMOAB.a
rm -fr .libs/libMOAB.lax
creating libMOAB.la
(cd .libs && rm -f libMOAB.la && ln -s ../libMOAB.la libMOAB.la)
make[2]: Leaving directory `/home/jason/moab/test/x86'
Making all in test
make[2]: Entering directory `/home/jason/moab/test/x86/test'
Making all in dual
make[3]: Entering directory `/home/jason/moab/test/x86/test/dual'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/x86/test/dual'
Making all in h5file
make[3]: Entering directory `/home/jason/moab/test/x86/test/h5file'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/x86/test/h5file'
Making all in obb
make[3]: Entering directory `/home/jason/moab/test/x86/test/obb'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/x86/test/obb'
Making all in perf
make[3]: Entering directory `/home/jason/moab/test/x86/test/perf'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jason/moab/test/x86/test/perf'
make[3]: Entering directory `/home/jason/moab/test/x86/test'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/jason/moab/test/x86/test'
make[2]: Leaving directory `/home/jason/moab/test/x86/test'
Making all in tools
make[2]: Entering directory `/home/jason/moab/test/x86/tools'
Making all in iMesh
make[3]: Entering directory `/home/jason/moab/test/x86/tools/iMesh'
Making all in .
make[4]: Entering directory `/home/jason/moab/test/x86/tools/iMesh'
/bin/sh ../../libtool --tag=CXX --mode=link c++  -Wall -pipe -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib   -L/opt/hdf5-1.6.5-32-c2/lib  -lm -o libiMesh.la -rpath /usr/local/lib  iMesh_MOAB.lo ../../libMOAB.la -lm
rm -fr  .libs/libiMesh.a .libs/libiMesh.la .libs/libiMesh.lai
ar cru .libs/libiMesh.a  iMesh_MOAB.o
ranlib .libs/libiMesh.a
creating libiMesh.la
(cd .libs && rm -f libiMesh.la && ln -s ../libiMesh.la libiMesh.la)
make[4]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh'
Making all in SIDL
make[4]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL'
make[4]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL'
make[3]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh'
make[2]: Leaving directory `/home/jason/moab/test/x86/tools'
make[1]: Leaving directory `/home/jason/moab/test/x86'