[Darshan-users] Darshan trace file not created for WRF

Tue Nov 26 01:30:19 CST 2024

Hi Shane,

Thanks for the useful information. The binary is indeed dynamically linked to libmpi.so:

$ ldd /apps/ku/gcc-9_4/openmpi-4_1/wrf/4.0/WRF/run/wrf.exe | grep libmpi
        libmpi_usempif08.so.40 => /apps/ku/gcc-9_4/openmpi/4.1/lib/libmpi_usempif08.so.40 (0x00007fc091c85000)
        libmpi_usempi_ignore_tkr.so.40 => /apps/ku/gcc-9_4/openmpi/4.1/lib/libmpi_usempi_ignore_tkr.so.40 (0x00007fc091a7a000)
        libmpi_mpifh.so.40 => /apps/ku/gcc-9_4/openmpi/4.1/lib/libmpi_mpifh.so.40 (0x00007fc09180e000)
        libmpi.so.40 => /apps/ku/gcc-9_4/openmpi/4.1/lib/libmpi.so.40 (0x00007fc0914e2000)
        libmpi_cxx.so.40 => /apps/ku/gcc-9_4/openmpi/4.1/lib/libmpi_cxx.so.40 (0x00007fc090881000)

The application is definitely calling MPI_FINALIZE() as I do not see any runtime error messages from Open MPI. If any of the processes failed to call it, then Open MPI would throw an error message which I am not seeing. I will try DARSHAN_INTERNAL_TIMING=1 and will let you know the outcome of it.

Regards,
Wadud.

Dr. Wadud Miah
Scientific Computing Support Senior Specialist
Scientific Computing Support

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From: Snyder, Shane <ssnyder at mcs.anl.gov>
Sent: 16 November 2024 01:03
To: Wadud Miah <wadud.miah at ku.ac.ae>; darshan-users at lists.mcs.anl.gov
Subject: Re: Darshan trace file not created for WRF

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One thing you can check is setting DARSHAN_INTERNAL_TIMING=1 in your environment — this will make Darshan print out a little bit of internal library timing information at initialize/finalize time which could give us a better clue about how far Darshan is getting.

Just guessing, but is it possible the job isn't calling MPI_Finalize()? That's when Darshan generates the log file for MPI applications. Usually, I would expect some sort of warning message if the app does call MPI_Finalize() and Darshan doesn't succeed in generating the log file.

Using LD_PRELOAD is also usually pretty fail-safe in terms of ensuring Darshan properly intercepts what the app is doing. That said, is it possible the app is somehow statically linking the MPI library? You could run ldd <wrf_executable_path> and ensure that you see libmpi.so listed? That would confirm MPI is linked dynamically which would theoretically be easy to instrument using LD_PRELOAD the way you are.

--Shane
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From: Darshan-users <darshan-users-bounces at lists.mcs.anl.gov<mailto:darshan-users-bounces at lists.mcs.anl.gov>> on behalf of Wadud Miah <wadud.miah at ku.ac.ae<mailto:wadud.miah at ku.ac.ae>>
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Subject: [Darshan-users] Darshan trace file not created for WRF

Hi, I am trying to profile the I/O of WRF and have the following settings: export DARSHAN_LOGPATH=/home/miahw/WRF_WADUD_PRE-COMPILED LD_PRELOAD=/home/miahw/openmpi-4. 1-darshan-3. 4. 5/lib/libdarshan. so mpirun -n $SLURM_NTASKS /apps/ku/gcc-9_4/openmpi-4_1/wrf/4. 0/WRF/run/wrf. exe
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Hi,

I am trying to profile the I/O of WRF and have the following settings:

export DARSHAN_LOGPATH=/home/miahw/WRF_WADUD_PRE-COMPILED

LD_PRELOAD=/home/miahw/openmpi-4.1-darshan-3.4.5/lib/libdarshan.so mpirun -n $SLURM_NTASKS /apps/ku/gcc-9_4/openmpi-4_1/wrf/4.0/WRF/run/wrf.exe

However, no trace file gets created and the job stdout and stderr does not contain any Darshan warning/error messages. Can anyone suggest a way to increase debug level to investigate this further?

Regards,

Dr. Wadud Miah
Scientific Computing Support Senior Specialist
Scientific Computing Support

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