[Darshan-users] h5py python application error : Darshan failed to map symbol: H5get_libversion

pramod kumbhar pramod.s.kumbhar at gmail.com
Sun Apr 9 06:02:01 CDT 2017


Hello All,

I have used darshan for parallel c/c++ application without issue but trying
to analyse python(3) application first time. This application uses h5py.

I compiled darshan with --enable-HDF5-pre-1.10 (or --enable-HDF5-post-1.10).

When I now run simple h5py test serially I get :

$ python3 test.py
Darshan failed to map symbol: H5get_libversion

If I don't enable hdf5 during configure then I see profiles being generated.
What am I missing here? Do I need parallel h5py application? Any hints will
be helpful!

Regards,
Pramod

p.s. h5py test program

import h5py
a = [1,2,3,4,5]
h5f = h5py.File('data.h5', 'w')
h5f.create_dataset('dataset_1', data=a)
h5f.close()
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