[Darshan-commits] Build failed in Jenkins: Radix-IO » Darshan » x86-master-dynamic #467

no-reply at alcf.anl.gov no-reply at alcf.anl.gov
Sat Mar 14 01:45:01 CDT 2020 

See <https://cimaster.alcf.anl.gov/jenkins/job/Radix-IO/job/Darshan/job/x86-master-dynamic/467/display/redirect>

Changes:


------------------------------------------
[...truncated 752.12 KB...]
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking for BG/Q environment... no
checking lustre/lustre_user.h usability... yes
checking lustre/lustre_user.h presence... yes
checking for lustre/lustre_user.h... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking whether byte ordering is bigendian... no
checking for struct aiocb64... yes
checking for off64_t... yes
checking mntent.h usability... yes
checking mntent.h presence... yes
checking for mntent.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking for MPI-IO support in MPI... yes
checking for MPI-IO prototypes without const qualifier... no
checking for MPI-IO prototypes with const qualifier... yes
checking for shared libraries in MPI... yes
checking for MPIO_Request... yes
checking for old (pre-3.1.1) style MPICH library naming convention... no
checking for fscanf redirect... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-mk-log-dirs.pl
config.status: creating darshan-gen-cc.pl
config.status: creating darshan-gen-cxx.pl
config.status: creating darshan-gen-fortran.pl
config.status: creating darshan-config
config.status: creating share/craype-1.x/darshan-module
config.status: creating share/craype-2.x/darshan-module
config.status: creating lib/pkgconfig/darshan-runtime.pc
config.status: creating share/mpi-profile/darshan-cc.conf
config.status: creating share/mpi-profile/darshan-cxx.conf
config.status: creating share/mpi-profile/darshan-f.conf
config.status: creating share/mpi-profile/darshan-bg-cc.conf
config.status: creating share/mpi-profile/darshan-bg-cxx.conf
config.status: creating share/mpi-profile/darshan-bg-f.conf
config.status: creating share/ld-opts/darshan-base-ld-opts
config.status: creating darshan-runtime-config.h
config.status: darshan-runtime-config.h is unchanged
configure: Building Darshan with CC=mpicc and with the following features:
configure: NULL module support:    yes
configure: POSIX module support:   yes
configure: STDIO module support:   yes
configure: DXT module support:     yes
configure: MPIIO module support:   yes
configure: PnetCDF module support: yes
configure: HDF5 module support:    no
configure: BG/Q module support:    no
configure: Lustre module support:  yes
configure: MDHIM module support:   no
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking if bzlib is wanted... yes
checking for BZ2_bzCompressInit in -lbz2... no
checking bzlib.h usability... no
checking bzlib.h presence... no
checking for bzlib.h... no
checking bzlib in /usr... failed
configure: WARNING: libbz2 not found; Darshan utilities will use gzip only.
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking for pdflatex... no
checking whether byte ordering is bigendian... no
checking for off64_t... yes
checking for strndup... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-job-summary/bin/darshan-job-summary.pl
config.status: creating maint/darshan-util.pc
config.status: creating darshan-util-config.h
config.status: darshan-util-config.h is unchanged
configure: WARNING: Please install pdflatex if you wish to use the darshan-job-summary.pl utility
[x86-master-dynamic] $ /bin/bash /tmp/jenkins3495157131728879485.sh
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -m 755 lib/libdarshan.a /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -m 755 lib/libdarshan-stubs.a /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -m 755 lib/libdarshan.so /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-mk-log-dirs.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-gen-cc.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-gen-cxx.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-gen-fortran.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-config /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/craype-1.x/modulefiles/darshan
install -m 755 share/craype-1.x/darshan-module /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/craype-1.x/modulefiles/darshan/3.2.0-pre1
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/craype-2.x/modulefiles/darshan
install -m 755 share/craype-2.x/darshan-module /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/craype-2.x/modulefiles/darshan/3.2.0-pre1
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile
install -m 755 share/mpi-profile/darshan-cc.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-cc.conf
install -m 755 share/mpi-profile/darshan-cxx.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-cxx.conf
install -m 755 share/mpi-profile/darshan-f.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-f.conf
install -m 755 share/mpi-profile/darshan-bg-cc.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-bg-cc.conf
install -m 755 share/mpi-profile/darshan-bg-cxx.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-bg-cxx.conf
install -m 755 share/mpi-profile/darshan-bg-f.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-bg-f.conf
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts
install -m 644 share/ld-opts/darshan-base-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-base-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-posix-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-posix-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-stdio-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-stdio-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-mpiio-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-mpiio-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-pnetcdf-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-pnetcdf-ld-opts
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/pkgconfig
install -m 644 lib/pkgconfig/darshan-runtime.pc /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/pkgconfig/darshan-runtime.pc
make: Nothing to be done for `all'.
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 755 darshan-analyzer /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-convert /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-diff /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-parser /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-dxt-parser /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-merge /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 ../../darshan-util/darshan-summary-per-file.sh /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 ../../darshan-util/dxt_analyzer.py /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 libdarshan-util.a /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -m 644 ../../darshan-util/darshan-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-posix-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-mpiio-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-hdf5-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-pnetcdf-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-bgq-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-null-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-lustre-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-stdio-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-dxt-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-mdhim-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-null-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-posix-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-mpiio-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-hdf5-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-pnetcdf-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-bgq-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-lustre-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-stdio-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-dxt-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-mdhim-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include/uthash-1.9.2
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include/uthash-1.9.2/src
install -m 644 uthash-1.9.2/src/uthash.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include/uthash-1.9.2/src/
install -m 644 ../../darshan-util/../darshan-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 755 darshan-job-summary/bin/darshan-job-summary.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/TeX
install -m 644 ../../darshan-util/darshan-job-summary/lib/TeX/Encode.pm /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/TeX/
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/Number
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/Number/Bytes
install -m 644 ../../darshan-util/darshan-job-summary/lib/Number/Bytes/Human.pm /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/Number/Bytes
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share
install -m 644 ../../darshan-util/darshan-job-summary/share/* /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/pkgconfig
install -m 644 maint/darshan-util.pc /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/pkgconfig/darshan-util.pc
[x86-master-dynamic] $ /bin/bash /tmp/jenkins5084181505667025655.sh
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/access-size-counter-test.sh...
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/cxxpi.sh...
Process 3 of 4 is on cinow-01.mcp.alcf.anl.gov
Process Process 2 of 4 is on cinow-01.mcp.alcf.anl.gov
Process 1 of 40 of 4 is on cinow-01.mcp.alcf.anl.gov
 is on cinow-01.mcp.alcf.anl.gov
pi is approximately 3.14159 Error is 8.33331e-10
wall clock time = 9.13143e-05
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/fperf-f77.sh...
 Access size per process =      4194304  bytes, ntimes =            5
 Write bandwidth without file sync =    429.66719082682948       Mbytes/sec
 Read bandwidth without prior file sync =    234.43041812333718       Mbytes/sec
 Write bandwidth including file sync =    34.846000005775913       Mbytes/sec
 Read bandwidth after file sync =    16545.672273139902       Mbytes/sec
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/fperf-f90.sh...
 Access size per process =      4194304  bytes, ntimes =            5
 Write bandwidth without file sync =    380.86362477830278       Mbytes/sec
 Read bandwidth without prior file sync =    85.211269082862387       Mbytes/sec
 Write bandwidth including file sync =    41.311727513657715       Mbytes/sec
 Read bandwidth after file sync =    10671.632420027905       Mbytes/sec
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/fprintf-fscanf-test.sh...
# Using stdio calls.
Error: STDIO bytes read count of 0 is incorrect
Error: failed to execute test case /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/fprintf-fscanf-test.sh
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/mpi-io-test-dxt.sh...
# Using mpi-io calls.
nr_procs = 4, nr_iter = 1, blk_sz = 16777216, coll = 0
# total_size = 67108864
# Write: min_t = 5.098743, max_t = 6.752218, mean_t = 5.512207, var_t = 0.683390
# Read:  min_t = 0.008380, max_t = 0.066191, mean_t = 0.022979, var_t = 0.000830
Write bandwidth = 9.938788 Mbytes/sec
Read bandwidth = 1013.860239 Mbytes/sec
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/mpi-io-test.sh...
# Using mpi-io calls.
nr_procs = 4, nr_iter = 1, blk_sz = 16777216, coll = 0
# total_size = 67108864
# Write: min_t = 0.004760, max_t = 0.005134, mean_t = 0.004930, var_t = 0.000000
# Read:  min_t = 0.007367, max_t = 0.069243, mean_t = 0.027682, var_t = 0.000851
Write bandwidth = 13072.402782 Mbytes/sec
Read bandwidth = 969.179676 Mbytes/sec
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/stdio-test.sh...
# Using stdio calls.
Done.
1 tests failed
Build step 'Execute shell' marked build as failure
Recording test results

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