[Darshan-commits] Build failed in Jenkins: Radix-IO » Darshan » theta-master-craymod #138
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Wed Jan 1 00:50:38 CST 2020
See <https://cimaster.alcf.anl.gov/jenkins/job/Radix-IO/job/Darshan/job/theta-master-craymod/138/display/redirect>
Changes:
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[...truncated 23.56 KB...]
uthash-1.9.2/tests/test23.c
uthash-1.9.2/tests/test24.ans
uthash-1.9.2/tests/test24.c
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uthash-1.9.2/tests/test25.c
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uthash-1.9.2/tests/test27.c
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uthash-1.9.2/tests/test28.c
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uthash-1.9.2/tests/test29.c
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uthash-1.9.2/tests/test3.c
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uthash-1.9.2/tests/test30.c
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uthash-1.9.2/tests/test31.c
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uthash-1.9.2/tests/test32.c
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uthash-1.9.2/tests/test33.c
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uthash-1.9.2/tests/test34.c
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uthash-1.9.2/tests/test35.c
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uthash-1.9.2/tests/test36.c
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uthash-1.9.2/tests/test39.c
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uthash-1.9.2/tests/test4.c
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uthash-1.9.2/tests/test8.c
uthash-1.9.2/tests/test9.ans
uthash-1.9.2/tests/test9.c
uthash-1.9.2/tests/threads/
uthash-1.9.2/tests/threads/Makefile
uthash-1.9.2/tests/threads/README
uthash-1.9.2/tests/threads/do_tests
uthash-1.9.2/tests/threads/test1.c
uthash-1.9.2/tests/threads/test2.c
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-logutils.c -o darshan-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-posix-logutils.c -o darshan-posix-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-mpiio-logutils.c -o darshan-mpiio-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-hdf5-logutils.c -o darshan-hdf5-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-pnetcdf-logutils.c -o darshan-pnetcdf-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-bgq-logutils.c -o darshan-bgq-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-lustre-logutils.c -o darshan-lustre-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-stdio-logutils.c -o darshan-stdio-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-dxt-logutils.c -o darshan-dxt-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-mdhim-logutils.c -o darshan-mdhim-logutils.o
ar rcs libdarshan-util.a darshan-logutils.o darshan-posix-logutils.o darshan-mpiio-logutils.o darshan-hdf5-logutils.o darshan-pnetcdf-logutils.o darshan-bgq-logutils.o darshan-lustre-logutils.o darshan-stdio-logutils.o darshan-dxt-logutils.o darshan-mdhim-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/darshan-null-logutils.c -o darshan-null-logutils.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -L/usr/lib ../../darshan-util/darshan-analyzer.c libdarshan-util.a -o darshan-analyzer -lz -lbz2
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -c ../../darshan-util/lookup3.c -o lookup3.o
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -L/usr/lib ../../darshan-util/darshan-convert.c lookup3.o libdarshan-util.a -o darshan-convert -lz -lbz2
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -L/usr/lib ../../darshan-util/darshan-diff.c libdarshan-util.a -o darshan-diff -lz -lbz2
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -L/usr/lib ../../darshan-util/darshan-parser.c libdarshan-util.a -o darshan-parser -lz -lbz2
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -L/usr/lib ../../darshan-util/darshan-dxt-parser.c libdarshan-util.a -o darshan-dxt-parser -lz -lbz2
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -L/usr/lib ../../darshan-util/darshan-merge.c libdarshan-util.a -o darshan-merge -lz -lbz2
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
gcc -I . -I .. -I ../../darshan-util -I ../../darshan-util/../ -DDARSHAN_CONFIG_H=\"darshan-util-config.h\" -g -O2 -I/usr/include -L/usr/lib ../../darshan-util/jenkins-hash-gen.c lookup3.o -o jenkins-hash-gen -lz -lbz2
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/pkgconfig
install -m 755 darshan-analyzer /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-convert /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-diff /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-parser /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-dxt-parser /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-merge /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 ../../darshan-util/darshan-summary-per-file.sh /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 ../../darshan-util/dxt_analyzer.py /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 libdarshan-util.a /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib
install -m 644 ../../darshan-util/darshan-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-posix-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-mpiio-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-hdf5-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-pnetcdf-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-bgq-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-null-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-lustre-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-stdio-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-dxt-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-mdhim-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-null-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-posix-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-mpiio-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-hdf5-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-pnetcdf-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-bgq-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-lustre-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-stdio-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-dxt-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-mdhim-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include/uthash-1.9.2
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include/uthash-1.9.2/src
install -m 644 uthash-1.9.2/src/uthash.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include/uthash-1.9.2/src/
install -m 644 ../../darshan-util/../darshan-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 755 darshan-job-summary/bin/darshan-job-summary.pl /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/TeX
install -m 644 ../../darshan-util/darshan-job-summary/lib/TeX/Encode.pm /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/TeX/
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/Number
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/Number/Bytes
install -m 644 ../../darshan-util/darshan-job-summary/lib/Number/Bytes/Human.pm /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/Number/Bytes
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share
install -m 644 ../../darshan-util/darshan-job-summary/share/* /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share
install -m 644 maint/darshan-util.pc /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/pkgconfig
[theta-master-craymod] $ /bin/bash /tmp/jenkins2635608955584707315.sh
Currently Loaded Modulefiles:
1) modules/3.2.11.3
2) gcc/8.3.0
3) craype-mic-knl
4) craype-network-aries
5) craype/2.6.1
6) cray-mpich/7.7.10
7) nompirun/nompirun
8) trackdeps
9) xalt
10) cray-libsci/19.06.1
11) udreg/2.3.2-6.0.7.1_5.15__g5196236.ari
12) ugni/6.0.14.0-6.0.7.1_3.15__gea11d3d.ari
13) pmi/5.0.14
14) dmapp/7.1.1-6.0.7.1_6.6__g45d1b37.ari
15) gni-headers/5.0.12.0-6.0.7.1_3.13__g3b1768f.ari
16) xpmem/2.2.15-6.0.7.1_5.13__g7549d06.ari
17) job/2.2.3-6.0.7.1_5.48__g6c4e934.ari
18) dvs/2.7_2.2.120-6.0.7.1_12.5__g74cb2cc4
19) alps/6.6.43-6.0.7.1_5.51__ga796da32.ari
20) rca/2.2.18-6.0.7.1_5.52__g2aa4f39.ari
21) atp/2.1.3
22) perftools-base/7.0.5
23) PrgEnv-gnu/6.0.5
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/access-size-counter-test.sh...
Job routed to queue "debug-cache-quad".
Memory mode set to cache quad for queue debug-cache-quad
Error: failed to open darshan log file /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/access-size-counter-test.darshan.
Error: failed to parse /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/access-size-counter-test.darshan
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/access-size-counter-test.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/cxxpi.sh...
Job routed to queue "debug-cache-quad".
Memory mode set to cache quad for queue debug-cache-quad
Error: failed to open darshan log file /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/cxxpi.darshan.
Error: failed to parse /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/cxxpi.darshan
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/cxxpi.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f77.sh...
Job routed to queue "debug-cache-quad".
Memory mode set to cache quad for queue debug-cache-quad
Error: failed to open darshan log file /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/fperf-f77.darshan.
Error: failed to parse /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/fperf-f77.darshan
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f77.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f90.sh...
Job routed to queue "debug-cache-quad".
Memory mode set to cache quad for queue debug-cache-quad
Error: failed to open darshan log file /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/fperf-f90.darshan.
Error: failed to parse /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/fperf-f90.darshan
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f90.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fprintf-fscanf-test.sh...
Job routed to queue "debug-cache-quad".
Memory mode set to cache quad for queue debug-cache-quad
Error: failed to open darshan log file /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/fprintf-fscanf-test.darshan.
Error: failed to parse /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/fprintf-fscanf-test.darshan
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fprintf-fscanf-test.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test-dxt.sh...
Job routed to queue "debug-cache-quad".
Memory mode set to cache quad for queue debug-cache-quad
Error: failed to open darshan log file /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/mpi-io-test-dxt.darshan.
Error: failed to parse /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/mpi-io-test-dxt.darshan
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test-dxt.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test.sh...
Job routed to queue "debug-cache-quad".
Memory mode set to cache quad for queue debug-cache-quad
Error: failed to open darshan log file /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/mpi-io-test.darshan.
Error: failed to parse /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/mpi-io-test.darshan
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/stdio-test.sh...
Job routed to queue "debug-cache-quad".
Memory mode set to cache quad for queue debug-cache-quad
Error: failed to open darshan log file /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/stdio-test.darshan.
Error: failed to parse /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/scratch/stdio-test.darshan
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/stdio-test.sh
Done.
8 tests failed
Build step 'Execute shell' marked build as failure
Recording test results
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