[Darshan-commits] [Git][darshan/darshan][dev-dxt-extra-info] 152 commits: clean up string handling in darshan_log_put_mounts()
Rob Latham
xgitlab at cels.anl.gov
Mon Apr 20 10:38:39 CDT 2020
Rob Latham pushed to branch dev-dxt-extra-info at darshan / darshan
Commits:
b5a2087b by Phil Carns at 2018-02-22T13:37:35-05:00
clean up string handling in darshan_log_put_mounts()
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43a2233e by Phil Carns at 2018-02-22T15:01:01-05:00
clean up dxt print routines
- resolve warnings
- make format more consistent
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1c72daf9 by Shane Snyder at 2018-02-27T13:24:13-06:00
additionally set __wrap_MPI_Init to undefined
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4063260c by Rob Latham at 2018-03-01T16:58:38-06:00
minor documentation fixups
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9abfa98b by Rob Latham at 2018-03-01T16:59:51-06:00
mapped wrong function
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6d49a2c4 by Rob Latham at 2018-03-02T15:52:22-06:00
null driver wasn't actually updating new records
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43648780 by Shane Snyder at 2018-03-05T20:48:45+00:00
bump config release numbers for 3.1.6
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1c9b46a4 by Shane Snyder at 2018-03-05T16:20:49-06:00
example output logs for 3.1.6 release
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04f97af4 by Shane Snyder at 2018-03-05T16:31:03-06:00
updated changelog for 3.1.6. release
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c5443990 by Shane Snyder at 2018-03-05T21:31:59-06:00
one more small doc change
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615f5396 by Phil Carns at 2018-04-02T16:59:35-04:00
omit outputting with old-style fopen counters
- these cannot be easily translated into Darshan 3.1.x format
- fixes #241
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9f1250a9 by Shane Snyder at 2018-04-10T17:26:02-05:00
refactor automated builds, and add theta hooks
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2ffc3584 by Shane Snyder at 2018-04-10T17:38:24-05:00
more automated build refactoring
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46fda15b by Shane Snyder at 2018-04-10T21:55:37-05:00
use absolute paths in regression scripts
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4f03b75b by Shane Snyder at 2018-04-13T12:52:33-05:00
CINOW support in automated builds
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6639a912 by Phil Carns at 2018-04-20T15:28:50-04:00
bug fix to MiB value reported in job summary
- perf_mbytes is a global used later in pdf generation, do not overwrite
in stdio output parsing
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81683bb5 by Shane Snyder at 2018-06-08T15:44:49-05:00
don't sum invalid posix counters
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b4ec5840 by Shane Snyder at 2018-06-11T15:22:34-05:00
Merge branch 'master' into 'issue-241-fopen-upconvert'
# Conflicts:
# ChangeLog
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1980d236 by Shane Snyder at 2018-06-11T15:25:47-05:00
add another comment for more details
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2c40940f by Shane Snyder at 2018-06-11T15:26:32-05:00
Merge branch 'issue-241-fopen-upconvert' into 'master'
omit outputting with old-style fopen counters
Closes #241
See merge request darshan/darshan!22
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91fa70eb by Rob Latham at 2018-06-22T11:48:58-05:00
modular instrumentation for MDHIM keyval
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f6588980 by Rob Latham at 2018-06-22T11:48:58-05:00
record distribution of keys to servers
this requires a hacked up version of mdhim until there's a real api for
getting this information.
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7055c66b by Rob Latham at 2018-06-22T11:48:58-05:00
update for API changes
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6129e36f by Rob Latham at 2018-06-22T11:48:58-05:00
get mdhim module working with more than one process
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00997bbb by Rob Latham at 2018-06-25T17:18:59-05:00
fix up shared record handling
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e8b628a9 by Rob Latham at 2018-06-27T09:03:00-05:00
promote server counters to 64 bits
the struct alignment is important here, as we are going to read this
struct once to get the fixed values and a second time to fill in the
extra histogram buckets.
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1a362ac0 by Shane Snyder at 2018-06-29T16:42:28-05:00
Merge branch 'hxhim-module' into 'master'
Hxhim module
See merge request darshan/darshan!23
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930ae155 by Rob Latham at 2018-08-23T16:16:13+00:00
Test the llapi_layout_ versions as well
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b4377269 by Phil Carns at 2018-10-02T15:06:28-04:00
fix typo in m4 test
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52c1c54a by Phil Carns at 2018-10-03T13:45:58-04:00
soften error handling in lustre module
Fixes #243
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b1ab519e by Glenn K. Lockwood at 2018-11-03T20:56:01-07:00
fix darshan-job-summary reporting spurious total bytes written
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4c900db7 by Philip Carns at 2018-11-05T14:19:08-06:00
Merge branch 'fix-perf-bytes' into 'master'
fix darshan-job-summary reporting spurious total bytes written
See merge request darshan/darshan!25
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ddc4cbb4 by Glenn K. Lockwood at 2018-11-24T09:46:38-08:00
bugfix to enable compilation on 32-bit platforms (resolves #252)
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1a8977a1 by Phil Carns at 2018-11-27T10:11:35-05:00
add wrapper for __open_2 function call
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be086b44 by Shane Snyder at 2018-11-27T11:13:51-06:00
Merge branch 'carns/dev-issue-253' into 'master'
add wrapper for __open_2 function call
Closes #253
See merge request darshan/darshan!28
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f119346b by Shane Snyder at 2018-11-27T11:26:17-06:00
Merge branch 'bugfix-32bit' into 'master'
bugfix to enable compilation on 32-bit platforms (resolves #252)
Closes #252
See merge request darshan/darshan!26
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67efd831 by Shane Snyder at 2018-11-29T10:39:37-06:00
add darshan_core_fprintf routine
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500db6a0 by Shane Snyder at 2018-11-29T10:39:49-06:00
convert all darshan fprintf calls to internal call
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9c83fab7 by Shane Snyder at 2018-11-29T10:45:57-06:00
Merge branch 'master' into darshan_core_fprintf
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a658ce00 by Philip Carns at 2018-11-29T11:50:20-06:00
Merge branch 'darshan_core_fprintf' into 'master'
implement internal darshan-core fprintf routine
Closes #251
See merge request darshan/darshan!29
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e0bc4a1a by Shane Snyder at 2018-12-05T14:36:02-06:00
only throwout empty stdin,stdout,stderr stdio recs
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4d0c757c by Shane Snyder at 2018-12-05T16:15:00-06:00
add function to query name associated with recid
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abdf2094 by Shane Snyder at 2018-12-05T16:16:29-06:00
add posix function for registering new fd
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5afac01b by Shane Snyder at 2018-12-05T16:16:43-06:00
wrap fileno in stdio module, forward fd to posix
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b38ff3c3 by Shane Snyder at 2018-12-05T16:32:00-06:00
add fileno counter support to posix, bump mod ver
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cfc92e59 by Shane Snyder at 2018-12-05T17:05:35-06:00
remove unused var
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66216227 by Shane Snyder at 2018-12-14T12:38:25-06:00
forgot header in darshan-core
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76e23680 by Shane Snyder at 2019-01-11T11:19:25-06:00
implement proper handling of dup family of calls
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14521976 by Shane Snyder at 2019-01-11T11:35:37-06:00
refactor interface between stdio/posix for fileno
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db253374 by Shane Snyder at 2019-01-11T14:21:23-06:00
refactor code and properly handle fdopen
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d20ef28f by Shane Snyder at 2019-01-11T15:46:54-06:00
Merge branch 'fileno-wrapping'
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6f661320 by Shane Snyder at 2019-01-14T14:56:08-06:00
add rename support to POSIX module
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598a2e85 by Shane Snyder at 2019-01-16T14:30:22-06:00
add close_start and open_end timers
for MPIIO, PNETCDF, and HDF5 modules.
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bcc58023 by Shane Snyder at 2019-01-17T15:13:51-06:00
add new RENAMED_FROM counter to POSIX module
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202764eb by Shane Snyder at 2019-01-17T15:14:41-06:00
Merge branch 'rename-wrapping'
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3a5d82c6 by Shane Snyder at 2019-01-18T12:55:55-06:00
backwards compatibility support for stdio/posix
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60dc97f3 by Shane Snyder at 2019-01-18T13:22:57-06:00
updated changelog for 3.1.7
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29c044e6 by Shane Snyder at 2019-01-18T14:38:31-06:00
updated docs for new POSIX/STDIO operations
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e023abff by Shane Snyder at 2019-01-18T14:45:53-06:00
more doc updates
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dac6bee1 by Shane Snyder at 2019-01-18T14:51:04-06:00
update config versions for release
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a8815d56 by Shane Snyder at 2019-01-18T16:42:24-06:00
example 3.1.7 darshan logs
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55860948 by Shane Snyder at 2019-01-21T15:03:34-06:00
add parser warnings for new posix/stdio modules
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e65be62d by Shane Snyder at 2019-01-22T11:29:59-06:00
update regression tests to avoid comment lines
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7d70eb0c by Shane Snyder at 2019-01-22T13:40:23-06:00
bug fix in handling dxt in darshan-convert tool
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bb730ef0 by Shane Snyder at 2019-01-22T13:43:05-06:00
updated ChangeLog
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05171223 by Shane Snyder at 2019-07-12T16:03:47-05:00
first cut at gitlab-ci.yml file
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07e48c11 by Shane Snyder at 2019-07-17T11:18:35-05:00
fix naming of gitlab-ci file
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e6dad0ee by Shane Snyder at 2019-07-30T09:07:22-05:00
first cut at refactor of darshan-core for no mpi
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54bd3e2d by Glenn K. Lockwood at 2019-07-30T07:57:55-07:00
allow compilation in the absence of mpicc
- add new --without-mpi to bypass all mpicc checks
- add --disable-xxx-mod to individually enable/disable each module
- add report of enabled/disabled modules at end of configure
- does NOT report compiler version yet
- does NOT report whether MPI is enabled or not yet
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ea5ed00a by Phil Carns at 2019-07-30T11:05:34-05:00
updated generated configure script
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c866a0af by Phil Carns at 2019-07-30T11:05:53-05:00
add darshan_core_wtime_absolute() helper
- works for both mpi and non-mpi builds
- unlike darshan_core_time(), it does not compute relative timestamp and
thus doesn't require darshan core to be initialized
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f67c6ce7 by Shane Snyder at 2019-07-30T11:15:19-05:00
apply no-mpi changes to posix module
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7019c495 by Phil Carns at 2019-08-05T10:07:49-04:00
fill in darshan-core guards around MPI calls
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34563531 by Phil Carns at 2019-08-06T11:05:52-04:00
remove some trailing whitespace
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d76936eb by Phil Carns at 2019-08-06T11:22:43-04:00
MPI guard around common variance reduction op
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b4bbc85a by Phil Carns at 2019-08-06T11:25:28-04:00
MPI guards in darshan-dynamic.h
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14135f2f by Phil Carns at 2019-08-06T11:29:00-04:00
trailing whitespace cleanup
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157643db by Phil Carns at 2019-08-06T12:08:58-04:00
don't build disabled modules
- also add option to disable "null" module for now
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9007db12 by Shane Snyder at 2019-08-07T17:09:06-05:00
first cut at dxt trace triggers
dynamic triggers still not working
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d172df2e by Shane Snyder at 2019-08-07T21:31:14-05:00
add user pointer to record_ref iterators
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ea9fb7f2 by Shane Snyder at 2019-08-08T14:38:24-05:00
code for filtering dynamic trace data
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86a9cb00 by Shane Snyder at 2019-08-09T13:51:05-05:00
finish implementing dynamic trace filtering
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6f70e04b by Shane Snyder at 2019-08-12T16:52:12-05:00
fix redundant MPIIO autoconf output
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d710db8e by Shane Snyder at 2019-08-13T12:54:09-05:00
add missing dxt header
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35a35fe5 by Shane Snyder at 2019-09-09T16:00:41-05:00
Merge branch 'dev-dynamic-dxt-trigger'
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1383589c by Shane Snyder at 2019-09-25T10:56:07-07:00
bug fix in filtering out dxt traces
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e535dd27 by Shane Snyder at 2019-11-06T13:17:56-06:00
update ChangeLog for 3.1.8
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b7a8f339 by Shane Snyder at 2019-11-06T14:14:28-06:00
tweak dxt trigger file env. var. name
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3b87ff57 by Shane Snyder at 2019-11-06T16:46:32-06:00
update runtime docs to explain trace triggers
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a60cfe5d by Shane Snyder at 2019-11-06T17:02:14-06:00
update lib versions in configure scripts
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125721c9 by Shane Snyder at 2019-11-06T20:25:01-06:00
example x86_64 output for 3.1.8
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e5f6d06c by Shane Snyder at 2019-11-07T03:25:10+00:00
example output from ppc
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369bff00 by Shane Snyder at 2019-11-07T15:36:08-06:00
type in ChangeLog
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fbd70e64 by Shane Snyder at 2019-11-11T19:26:22+00:00
add more module debug output to theta tests
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640275d2 by Shane Snyder at 2019-11-11T16:51:50-06:00
port mpiio, pnetcdf, stdio to non-mpi changes
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f6d6be43 by Shane Snyder at 2019-11-15T16:44:31-06:00
port dxt module to no-mpi changes
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fe73ff3e by Shane Snyder at 2019-12-05T13:27:45-06:00
add more autoconf logic for MPI, GCC detection
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bd164684 by Shane Snyder at 2019-12-05T13:49:10-06:00
add new autoconf macro for detecting mpicc
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b103ac60 by Shane Snyder at 2019-12-05T14:34:30-06:00
bug fix in gcc check ac macro
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891fc582 by Shane Snyder at 2019-12-05T22:22:20+00:00
add some missing ifdef wrapping in init
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48c149c8 by Shane Snyder at 2019-12-06T12:19:20-06:00
port null module to new core api
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fbd7831f by Shane Snyder at 2019-12-06T12:19:36-06:00
some autotools sanity checks and cleanup
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5fa159a7 by Shane Snyder at 2019-12-06T14:21:35-06:00
port mdhim module to non-mpi changes
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dee86d0c by Shane Snyder at 2019-12-06T15:15:09-06:00
dup COMM_WORLD rather than using it directly
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2d3f980d by Shane Snyder at 2019-12-10T12:00:52-06:00
update darshan-runtime doc to reflect non-mpi work
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4fd1d6d3 by Shane Snyder at 2019-12-10T12:13:17-08:00
port lustre mod to recent darshan changes
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146a6ccb by Shane Snyder at 2019-12-10T12:29:00-08:00
port hdf5 mod to recent darshan changes
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c0e202d6 by Shane Snyder at 2019-12-10T13:55:25-08:00
only include ld-opts for modules we build
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d987494e by Shane Snyder at 2019-12-10T22:40:47-06:00
bug fix: don't use mpi_in_place on nonzero ranks
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aff75f19 by Shane Snyder at 2019-12-10T22:40:47-06:00
bug fix: set input buffer for mpi reduxes
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e12c75c2 by Shane Snyder at 2019-12-11T15:19:40+00:00
port bgq mod to recent api changes
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9dfed193 by Shane Snyder at 2019-12-11T11:24:20-06:00
Merge branch 'dev-no-mpi' into HEAD
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32daf6fd by Shane Snyder at 2019-12-11T11:34:19-06:00
update ChangeLog for 3.2.0-pre1
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57ffa711 by Shane Snyder at 2019-12-11T11:34:30-06:00
update version numbers for 3.2.0-pre1
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2178526f by Shane Snyder at 2019-12-11T11:54:13-06:00
bug fix: shared records not being removed
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d88e8161 by Shane Snyder at 2019-12-19T15:51:56-06:00
two darshan_core_wtime fixes
1) make sure wtime_offset is set properly when using MPI
2) fix ifdef logic to properly get wtime in all non-MPI cases
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d89229b7 by Shane Snyder at 2019-12-19T15:53:22-06:00
bug fix for segfaults when reducing hdf5 recs
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538bb069 by Shane Snyder at 2019-12-20T09:50:15-06:00
bug fix in dxt_analyzer if no jobid given
reported by Francois Trahay
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0db4e79c by Shane Snyder at 2020-01-07T15:15:56-06:00
Update .gitlab-ci.yml
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d86cfe96 by Shane Snyder at 2020-01-07T15:17:52-06:00
Update .gitlab-ci.yml
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5c353223 by Shane Snyder at 2020-01-07T15:23:33-06:00
Update .gitlab-ci.yml
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6be034f4 by Shane Snyder at 2020-01-08T16:44:25-06:00
more tinkering to get gitlab-ci right
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21483c02 by Shane Snyder at 2020-01-08T16:49:17-06:00
more gitlab-ci tinkering
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28fcd92f by Shane Snyder at 2020-01-24T15:25:08-06:00
compiler warning fix for darshan-log-format
This fix resolves compiler warnings from g++ related to
Darshan module names array.
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733cac5d by Shane Snyder at 2020-01-24T15:42:49-06:00
include variadic args in calls to DARSHAN_WARN
>From Francois Trahay
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36d8e168 by Shane Snyder at 2020-02-13T16:10:11-06:00
add autoconf test for fscanf redirect
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bb2909d1 by Shane Snyder at 2020-02-13T17:42:31-06:00
slight modification of autoconf test
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82eb9e9e by Shane Snyder at 2020-02-13T18:00:35-06:00
need gnu_source for config check
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7ff18700 by Shane Snyder at 2020-02-13T18:03:18-06:00
ifdef wrap in fscanf redirect case
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9c769b2c by Philip Carns at 2020-02-14T07:33:14-06:00
Merge branch 'dev-fscanf-redefined' into 'master'
fix fscanf redefinitions
See merge request darshan/darshan!35
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b102e65f by Philip Carns at 2020-02-24T15:27:52-06:00
bug fix to pkgconfig path for darshan-util
- reported by Matthew Curry
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68b06d4a by Philip Carns at 2020-02-24T15:27:52-06:00
Merge branch 'carns/bugfix-pkgconfig-destdir' into 'master'
bug fix to pkgconfig path for darshan-util
See merge request darshan/darshan!36
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84b360a7 by Christopher J. Morrone at 2020-03-05T11:05:43-08:00
Make DESTDIR operation match common practice
Modify DESTDIR to match common practice (for instance, that of automake),
in that DESTDIR represents a staged install directory. It is intended
that the tree would need to than be copied to the final install location
afterwards. When supplied, DESTDIR will not change any compiled-in
paths in darshan.
See the automake manual section about DESTDIR for an example of standard
usage.
https://www.gnu.org/software/automake/manual/html_node/DESTDIR.html
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b427e72b by Christopher J. Morrone at 2020-03-05T14:14:58-08:00
Make "--with-mem-align" optional, and default to 8
Little guidance is given for what the the memory alignment value means
or how to determine it, so making it optional lowers a barrier to
getting started with darshan.
8 seems to be the common value for "--with-mem-align", so we make
it the default.
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91c2d4a6 by Philip Carns at 2020-03-06T10:07:45-06:00
Merge branch 'fix_destdir' into 'master'
Make DESTDIR operation match common practice
See merge request darshan/darshan!37
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f4939002 by Philip Carns at 2020-03-06T10:10:55-06:00
Merge branch 'mem_align' into 'master'
Make "--with-mem-align" optional, and default to 8
See merge request darshan/darshan!38
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54d7a7a4 by Philip Carns at 2020-03-26T15:23:55-05:00
remove deprecated Fortran notes
- current version of Darshan should work with the particular Intel and
MPICH versions noted in the docs since there is no longer a problem
with bindings using PMPI directly
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428247f4 by Shane Snyder at 2020-03-26T15:23:55-05:00
Merge branch 'carns/dev-remove-fortran-doc-notes' into 'master'
remove deprecated Fortran notes
See merge request darshan/darshan!40
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5102d021 by Philip Carns at 2020-03-27T09:27:23-05:00
alternative implementation of DARSHAN_WRAPPER_MAP
- uses function alias (via glibc's __REDIRECT macro) rather than
generating a shim function
- this is intended to avoid possibility of infinite loop if a
conventional PMPI instrumentation tool is used at the same time as an
explicitly linked darshan library
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405131f9 by Shane Snyder at 2020-03-27T09:27:23-05:00
Merge branch 'carns/dev-wrapper-map-alias' into 'master'
alternative implementation of DARSHAN_WRAPPER_MAP
See merge request darshan/darshan!39
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0750b747 by Philip Carns at 2020-03-27T10:04:24-05:00
explicitly link darshan when dynamically linking
- for some platforms (particularly the Cray Programming Environment)
this is sufficient to enable instrumentation on dynamically-linked
executables with the current version of Darshan
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7715697e by Shane Snyder at 2020-03-27T10:04:24-05:00
Merge branch 'carns/dev-dyn-link-updates' into 'master'
revise dynamic linking strategy
See merge request darshan/darshan!41
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201d8d96 by Shane Snyder at 2020-04-07T09:24:20-05:00
fix for fscanf wrappers in static linking
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50c4669d by Shane Snyder at 2020-04-07T09:24:20-05:00
Merge branch 'dev-fscanf-wrapper-fix' into 'master'
fix for fscanf wrappers in static linking
See merge request darshan/darshan!43
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f759e67f by Shane Snyder at 2020-04-09T13:02:12-05:00
simplify static linking implementation
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bbdfb4f9 by Shane Snyder at 2020-04-09T13:02:12-05:00
Merge branch 'dev-cleanup-static-link' into 'master'
simplify static linking implementation
See merge request darshan/darshan!44
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3b575b42 by Shane Snyder at 2020-04-20T09:33:35-05:00
test stage should actually be shell, not batch
we invoke batch scheduler directly in our scripts
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7dfbddce by Shane Snyder at 2020-04-20T09:33:35-05:00
Merge branch 'dev-gitlab-ci' into 'master'
add GitLab CI hooks
See merge request darshan/darshan!45
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cf60c400 by Rob Latham at 2020-04-20T10:34:39-05:00
Initialize arguments for MPI-IO check
probably paranoia, but just in case a compiler is set to turn warnings
into errors, let's explicitly initialize these parameters to
MPI_File_open (even though it's a compile-only check and will never
execute)
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6bd1cfea by Rob Latham at 2020-04-20T10:34:39-05:00
fix a shadowed declaration warning
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f9eab31e by Rob Latham at 2020-04-20T10:34:39-05:00
add an 'offset' to mpi-io traces
We can obtain the implicit file pointer with MPI_File_get_position.
Similar routine for the shared file pointer. Explicit file ponters
already provide an offset.
In all three cases MPI_File_get_byte_offset turns "offsets in terms of
file types" into an explicit count of bytes, so I stuck _get_byte_offset
into the MPIIO_RECORD_ macro.
- - - - -
00304584 by Rob Latham at 2020-04-20T10:34:39-05:00
update parser to show MPI-IO offset information
- - - - -
25 changed files:
- + .gitlab-ci.yml
- ChangeLog
- darshan-hdf5-log-format.h
- darshan-log-format.h
- + darshan-mdhim-log-format.h
- darshan-mpiio-log-format.h
- darshan-pnetcdf-log-format.h
- darshan-posix-log-format.h
- darshan-runtime/Makefile.in
- darshan-runtime/configure
- darshan-runtime/configure.in
- darshan-runtime/darshan-common.h
- darshan-runtime/darshan-config.in
- darshan-runtime/darshan-core.h
- + darshan-runtime/darshan-dxt.h
- darshan-runtime/darshan-dynamic.h
- darshan-runtime/darshan-gen-cc.pl.in
- darshan-runtime/darshan-gen-cxx.pl.in
- darshan-runtime/darshan-gen-fortran.pl.in
- darshan-runtime/darshan-runtime-config.h.in
- darshan-runtime/darshan.h
- darshan-runtime/doc/darshan-runtime.txt
- darshan-runtime/lib/darshan-bgq.c
- darshan-runtime/lib/darshan-common.c
- darshan-runtime/lib/darshan-core-init-finalize.c
The diff was not included because it is too large.
View it on GitLab: https://xgitlab.cels.anl.gov/darshan/darshan/compare/657de0d7db873245c804525c16713c9c6c635c74...003045842abd7ee69e9e640a481c225b81668fda
--
View it on GitLab: https://xgitlab.cels.anl.gov/darshan/darshan/compare/657de0d7db873245c804525c16713c9c6c635c74...003045842abd7ee69e9e640a481c225b81668fda
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