[Darshan-commits] Build failed in Jenkins: Radix-IO » Darshan » x86-master-dynamic #141
no-reply at alcf.anl.gov
no-reply at alcf.anl.gov
Fri Aug 31 01:45:01 CDT 2018
See <https://cimaster.alcf.anl.gov/jenkins/job/Radix-IO/job/Darshan/job/x86-master-dynamic/141/display/redirect>
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[...truncated 751.47 KB...]
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
yes
checking how to run the C preprocessor... mpicc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking for BG/Q environment... no
checking lustre/lustre_user.h usability... yes
checking lustre/lustre_user.h presence... yes
checking for lustre/lustre_user.h... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking whether byte ordering is bigendian... no
checking for struct aiocb64... yes
checking for off64_t... yes
checking mntent.h usability... yes
checking mntent.h presence... yes
checking for mntent.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking for MPI-IO support in MPI... yes
checking for MPI-IO prototypes without const qualifier... no
checking for MPI-IO prototypes with const qualifier... yes
checking for shared libraries in MPI... yes
checking for MPIO_Request... yes
checking for old (pre-3.1.1) style MPICH library naming convention... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-mk-log-dirs.pl
config.status: creating darshan-gen-cc.pl
config.status: creating darshan-gen-cxx.pl
config.status: creating darshan-gen-fortran.pl
config.status: creating darshan-config
config.status: creating share/craype-1.x/darshan-module
config.status: creating share/craype-2.x/darshan-module
config.status: creating lib/pkgconfig/darshan-runtime.pc
config.status: creating share/mpi-profile/darshan-cc.conf
config.status: creating share/mpi-profile/darshan-cxx.conf
config.status: creating share/mpi-profile/darshan-f.conf
config.status: creating share/mpi-profile/darshan-bg-cc.conf
config.status: creating share/mpi-profile/darshan-bg-cxx.conf
config.status: creating share/mpi-profile/darshan-bg-f.conf
config.status: creating share/ld-opts/darshan-base-ld-opts
config.status: creating darshan-runtime-config.h
config.status: darshan-runtime-config.h is unchanged
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking if bzlib is wanted... yes
checking for BZ2_bzCompressInit in -lbz2... no
checking bzlib.h usability... no
checking bzlib.h presence... no
checking for bzlib.h... no
checking bzlib in /usr... failed
configure: WARNING: libbz2 not found; Darshan utilities will use gzip only.
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking for pdflatex... no
checking whether byte ordering is bigendian... no
checking for off64_t... yes
checking for strndup... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-job-summary/bin/darshan-job-summary.pl
config.status: creating maint/darshan-util.pc
config.status: creating darshan-util-config.h
config.status: darshan-util-config.h is unchanged
configure: WARNING: Please install pdflatex if you wish to use the darshan-job-summary.pl utility
[x86-master-dynamic] $ /bin/bash /tmp/jenkins9212538395612287377.sh
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -m 755 lib/libdarshan.a /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -m 755 lib/libdarshan-stubs.a /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -m 755 lib/libdarshan.so /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-mk-log-dirs.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-gen-cc.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-gen-cxx.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-gen-fortran.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-config /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/craype-1.x/modulefiles/darshan
install -m 755 share/craype-1.x/darshan-module /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/craype-1.x/modulefiles/darshan/3.1.6
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/craype-2.x/modulefiles/darshan
install -m 755 share/craype-2.x/darshan-module /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/craype-2.x/modulefiles/darshan/3.1.6
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile
install -m 755 share/mpi-profile/darshan-cc.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-cc.conf
install -m 755 share/mpi-profile/darshan-cxx.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-cxx.conf
install -m 755 share/mpi-profile/darshan-f.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-f.conf
install -m 755 share/mpi-profile/darshan-bg-cc.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-bg-cc.conf
install -m 755 share/mpi-profile/darshan-bg-cxx.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-bg-cxx.conf
install -m 755 share/mpi-profile/darshan-bg-f.conf /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/mpi-profile/darshan-bg-f.conf
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts
install -m 644 share/ld-opts/darshan-base-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-base-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-posix-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-posix-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-pnetcdf-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-pnetcdf-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-stdio-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-stdio-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-mpiio-ld-opts /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share/ld-opts/darshan-mpiio-ld-opts
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/pkgconfig
install -m 644 lib/pkgconfig/darshan-runtime.pc /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/pkgconfig/darshan-runtime.pc
make: Nothing to be done for `all'.
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/pkgconfig
install -m 755 darshan-analyzer /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-convert /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-diff /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-parser /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-dxt-parser /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 darshan-merge /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 ../../darshan-util/darshan-summary-per-file.sh /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 ../../darshan-util/dxt_analyzer.py /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -m 755 libdarshan-util.a /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib
install -m 644 ../../darshan-util/darshan-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-posix-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-mpiio-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-hdf5-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-pnetcdf-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-bgq-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-null-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-lustre-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-stdio-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-dxt-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/darshan-mdhim-logutils.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-null-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-posix-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-mpiio-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-hdf5-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-pnetcdf-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-bgq-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-lustre-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-stdio-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-dxt-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 644 ../../darshan-util/../darshan-mdhim-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include/uthash-1.9.2
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include/uthash-1.9.2/src
install -m 644 uthash-1.9.2/src/uthash.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include/uthash-1.9.2/src/
install -m 644 ../../darshan-util/../darshan-log-format.h /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/include
install -m 755 darshan-job-summary/bin/darshan-job-summary.pl /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/bin
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/TeX
install -m 644 ../../darshan-util/darshan-job-summary/lib/TeX/Encode.pm /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/TeX/
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/Number
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/Number/Bytes
install -m 644 ../../darshan-util/darshan-job-summary/lib/Number/Bytes/Human.pm /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/Number/Bytes
install -d /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share
install -m 644 ../../darshan-util/darshan-job-summary/share/* /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/share
install -m 644 maint/darshan-util.pc /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/install/lib/pkgconfig
[x86-master-dynamic] $ /bin/bash /tmp/jenkins2844128477249174130.sh
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/access-size-counter-test.sh...
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/cxxpi.sh...
Process 3 of 4 is on cinow-01.mcp.alcf.anl.gov
Process 2 of 4 is on cinow-01.mcp.alcf.anl.gov
Process 0 of 4 is on cinow-01.mcp.alcf.anl.gov
Process 1 of 4 is on cinow-01.mcp.alcf.anl.gov
pi is approximately 3.14159 Error is 8.33331e-10
wall clock time = 0.000840187
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/fperf-f77.sh...
Access size per process = 4194304 bytes, ntimes = 5
Write bandwidth without file sync = 462.90962791363955 Mbytes/sec
Read bandwidth without prior file sync = 385.98188906683635 Mbytes/sec
Write bandwidth including file sync = 37.591406215948510 Mbytes/sec
Read bandwidth after file sync = 15129.809541531713 Mbytes/sec
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/fperf-f90.sh...
Access size per process = 4194304 bytes, ntimes = 5
Write bandwidth without file sync = 301.18964619178553 Mbytes/sec
Read bandwidth without prior file sync = 89.877339799964744 Mbytes/sec
Write bandwidth including file sync = 36.231610560471879 Mbytes/sec
Read bandwidth after file sync = 14279.371789298701 Mbytes/sec
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/fprintf-fscanf-test.sh...
# Using stdio calls.
Error: STDIO bytes read count of 0 is incorrect
Error: failed to execute test case /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/fprintf-fscanf-test.sh
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/mpi-io-test-dxt.sh...
# Using mpi-io calls.
nr_procs = 4, nr_iter = 1, blk_sz = 16777216, coll = 0
# total_size = 67108864
# Write: min_t = 1.421427, max_t = 5.901099, mean_t = 3.996514, var_t = 3.494435
# Read: min_t = 0.008085, max_t = 0.056109, mean_t = 0.020234, var_t = 0.000572
Write bandwidth = 11.372266 Mbytes/sec
Read bandwidth = 1196.040506 Mbytes/sec
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/mpi-io-test.sh...
# Using mpi-io calls.
nr_procs = 4, nr_iter = 1, blk_sz = 16777216, coll = 0
# total_size = 67108864
# Write: min_t = 0.004699, max_t = 0.005170, mean_t = 0.004920, var_t = 0.000000
# Read: min_t = 0.007598, max_t = 0.056578, mean_t = 0.022628, var_t = 0.000539
Write bandwidth = 12980.768157 Mbytes/sec
Read bandwidth = 1186.126675 Mbytes/sec
Done.
Running /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/stdio-test.sh...
# Using stdio calls.
Error: STDIO open count of 0 is incorrect
Error: failed to execute test case /gpfs/mira-home/radixio/cinow-01/workspace/Radix-IO/Darshan/x86-master-dynamic/darshan-test/regression/test-cases/stdio-test.sh
Done.
2 tests failed
Build step 'Execute shell' marked build as failure
Recording test results
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