[Darshan-commits] Build failed in Jenkins: Radix-IO » Darshan » theta-master-craymod #7

Tue Apr 10 21:36:48 CDT 2018

See <https://cimaster.alcf.anl.gov/jenkins/job/Radix-IO/job/Darshan/job/theta-master-craymod/7/display/redirect>

------------------------------------------
[...truncated 989 B...]
 > git fetch --tags --progress git at xgitlab.cels.anl.gov:darshan/darshan.git +refs/heads/*:refs/remotes/origin/*
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision 2ffc358418f23149c3259f9506bc53b1d1dbd2b8 (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 2ffc358418f23149c3259f9506bc53b1d1dbd2b8
Commit message: "more automated build refactoring"
 > git rev-list --no-walk 2ffc358418f23149c3259f9506bc53b1d1dbd2b8 # timeout=10
[theta-master-craymod] $ /bin/bash /tmp/jenkins3000686879800603156.sh
[theta-master-craymod] $ /bin/bash /tmp/jenkins2892024311083939878.sh
checking for a BSD-compatible install... /usr/bin/install -c
checking whether the mpicc compiler works... checking for x86_64-gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
yes
checking how to run the C preprocessor... cc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking for BG/Q environment... no
checking lustre/lustre_user.h usability... yes
checking lustre/lustre_user.h presence... yes
checking for lustre/lustre_user.h... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking whether byte ordering is bigendian... no
checking for struct aiocb64... yes
checking for off64_t... yes
checking mntent.h usability... yes
checking mntent.h presence... yes
checking for mntent.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking for MPI-IO support in MPI... yes
checking for MPI-IO prototypes without const qualifier... no
checking for MPI-IO prototypes with const qualifier... yes
checking for shared libraries in MPI... yes
checking for MPIO_Request... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-mk-log-dirs.pl
config.status: creating darshan-gen-cc.pl
config.status: creating darshan-gen-cxx.pl
config.status: creating darshan-gen-fortran.pl
config.status: creating darshan-config
config.status: creating share/craype-1.x/darshan-module
config.status: creating share/craype-2.x/darshan-module
config.status: creating lib/pkgconfig/darshan-runtime.pc
config.status: creating share/mpi-profile/darshan-cc.conf
config.status: creating share/mpi-profile/darshan-cxx.conf
config.status: creating share/mpi-profile/darshan-f.conf
config.status: creating share/mpi-profile/darshan-bg-cc.conf
config.status: creating share/mpi-profile/darshan-bg-cxx.conf
config.status: creating share/mpi-profile/darshan-bg-f.conf
config.status: creating share/ld-opts/darshan-base-ld-opts
config.status: creating darshan-runtime-config.h
config.status: darshan-runtime-config.h is unchanged
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking if bzlib is wanted... yes
checking for BZ2_bzCompressInit in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for BZ2_bzCompressInit in -lbz2... (cached) yes
checking bzlib in /usr... ok
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking for pdflatex... yes
checking for -halt-on-error argument to pdflatex... yes
checking whether byte ordering is bigendian... no
checking for off64_t... yes
checking for strndup... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-job-summary/bin/darshan-job-summary.pl
config.status: creating maint/darshan-util.pc
config.status: creating darshan-util-config.h
config.status: darshan-util-config.h is unchanged
[theta-master-craymod] $ /bin/bash /tmp/jenkins5653722645270759782.sh
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib
install -m 755 lib/libdarshan.a /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib
install -m 755 lib/libdarshan-stubs.a /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib
install -m 755 lib/libdarshan.so /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-mk-log-dirs.pl /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-gen-cc.pl /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-gen-cxx.pl /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-gen-fortran.pl /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-config /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/craype-1.x/modulefiles/darshan
install -m 755 share/craype-1.x/darshan-module /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/craype-1.x/modulefiles/darshan/3.1.6
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/craype-2.x/modulefiles/darshan
install -m 755 share/craype-2.x/darshan-module /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/craype-2.x/modulefiles/darshan/3.1.6
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/mpi-profile
install -m 755 share/mpi-profile/darshan-cc.conf /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/mpi-profile/darshan-cc.conf
install -m 755 share/mpi-profile/darshan-cxx.conf /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/mpi-profile/darshan-cxx.conf
install -m 755 share/mpi-profile/darshan-f.conf /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/mpi-profile/darshan-f.conf
install -m 755 share/mpi-profile/darshan-bg-cc.conf /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/mpi-profile/darshan-bg-cc.conf
install -m 755 share/mpi-profile/darshan-bg-cxx.conf /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/mpi-profile/darshan-bg-cxx.conf
install -m 755 share/mpi-profile/darshan-bg-f.conf /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/mpi-profile/darshan-bg-f.conf
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/ld-opts
install -m 644 share/ld-opts/darshan-base-ld-opts /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/ld-opts/darshan-base-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-posix-ld-opts /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/ld-opts/darshan-posix-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-pnetcdf-ld-opts /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/ld-opts/darshan-pnetcdf-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-stdio-ld-opts /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/ld-opts/darshan-stdio-ld-opts
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-mpiio-ld-opts /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share/ld-opts/darshan-mpiio-ld-opts
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/pkgconfig
install -m 644 lib/pkgconfig/darshan-runtime.pc /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/pkgconfig/darshan-runtime.pc
make: Nothing to be done for 'all'.
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/pkgconfig
install -m 755 darshan-analyzer /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-convert /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-diff /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-parser /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-dxt-parser /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 darshan-merge /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 ../../darshan-util/darshan-summary-per-file.sh /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 ../../darshan-util/dxt_analyzer.py /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -m 755 libdarshan-util.a /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib
install -m 644 ../../darshan-util/darshan-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-posix-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-mpiio-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-hdf5-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-pnetcdf-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-bgq-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-null-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-lustre-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-stdio-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/darshan-dxt-logutils.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-null-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-posix-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-mpiio-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-hdf5-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-pnetcdf-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-bgq-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-lustre-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-stdio-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 644 ../../darshan-util/../darshan-dxt-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include/uthash-1.9.2
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include/uthash-1.9.2/src
install -m 644 uthash-1.9.2/src/uthash.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include/uthash-1.9.2/src/
install -m 644 ../../darshan-util/../darshan-log-format.h /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/include
install -m 755 darshan-job-summary/bin/darshan-job-summary.pl /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/bin
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/TeX
install -m 644 ../../darshan-util/darshan-job-summary/lib/TeX/Encode.pm /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/TeX/
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/Number
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/Number/Bytes
install -m 644 ../../darshan-util/darshan-job-summary/lib/Number/Bytes/Human.pm /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/Number/Bytes
install -d /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share
install -m 644 ../../darshan-util/darshan-job-summary/share/* /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/share
install -m 644 maint/darshan-util.pc /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/install/lib/pkgconfig
[theta-master-craymod] $ /bin/bash /tmp/jenkins2077896178550774047.sh
*********
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod
*********
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/access-size-counter-test.sh...
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/access-size-counter-test.sh: line 17: cray-module-alcf/runjob.sh: No such file or directory
Error: failed to execute access-size-counter-test
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/access-size-counter-test.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/cxxpi.sh...
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/cxxpi.sh: line 17: cray-module-alcf/runjob.sh: No such file or directory
Error: failed to execute cxxpi
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/cxxpi.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f77.sh...
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f77.sh: line 17: cray-module-alcf/runjob.sh: No such file or directory
Error: failed to execute fperf-f77
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f77.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f90.sh...
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f90.sh: line 17: cray-module-alcf/runjob.sh: No such file or directory
Error: failed to execute fperf-f90
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fperf-f90.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fprintf-fscanf-test.sh...
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fprintf-fscanf-test.sh: line 17: cray-module-alcf/runjob.sh: No such file or directory
Error: failed to execute fprintf-fscanf-test
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/fprintf-fscanf-test.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test-dxt.sh...
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test-dxt.sh: line 20: cray-module-alcf/runjob.sh: No such file or directory
Error: failed to execute mpi-io-test
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test-dxt.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test.sh...
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test.sh: line 17: cray-module-alcf/runjob.sh: No such file or directory
Error: failed to execute mpi-io-test
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/mpi-io-test.sh
Done.
Running /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/stdio-test.sh...
/gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/stdio-test.sh: line 17: cray-module-alcf/runjob.sh: No such file or directory
Error: failed to execute stdio-test
Error: failed to execute test case /gpfs/mira-home/radixio/theta/workspace/Radix-IO/Darshan/theta-master-craymod/darshan-test/regression/test-cases/stdio-test.sh
Done.
8 tests failed
Build step 'Execute shell' marked build as failure
Recording test results