[Darshan-commits] Build failed in Jenkins: darshan-master-mpich-3.0.4-profile-conf #518

jenkins-ci at mcs.anl.gov jenkins-ci at mcs.anl.gov
Sat Sep 17 00:12:38 CDT 2016 

See <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/518/changes>

Changes:

[carns] clarify contents of common access size table

[carns] get file count summary working with stdio

[carns] update rest of darshan-job-summary for STDIO mod

------------------------------------------
[...truncated 9980 lines...]
if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-install/share/doc/mpich/logging.pdf> ; fi
 mkdir -p '<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-install/include'>
 /usr/bin/install -c -m 644 src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod '<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-install/include'>
 mkdir -p '<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-install/include'>
 /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/f77/mpif.h src/include/mpi.h '<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-install/include'>
 mkdir -p '<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-install/lib/pkgconfig'>
 /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-install/lib/pkgconfig'>
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-3.0.4'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-3.0.4'>
Making install in examples
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-3.0.4/examples'>
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-3.0.4/examples'>
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-3.0.4/examples'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-3.0.4/examples'>
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/mpich-3.0.4'>
[darshan-master-mpich-3.0.4-profile-conf] $ /bin/bash /tmp/hudson7294295888207671405.sh
[darshan-master-mpich-3.0.4-profile-conf] $ /bin/bash /tmp/hudson7755676639935055183.sh
checking for a BSD-compatible install... /usr/bin/install -c
checking whether the mpicc compiler works... checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
yes
checking how to run the C preprocessor... mpicc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking for BG/Q environment... no
checking lustre/lustre_user.h usability... no
checking lustre/lustre_user.h presence... no
checking for lustre/lustre_user.h... no
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking whether byte ordering is bigendian... no
checking for struct aiocb64... yes
checking for off64_t... yes
checking mntent.h usability... yes
checking mntent.h presence... yes
checking for mntent.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking for MPI-IO support in MPI... yes
checking for MPI-IO prototypes without const qualifier... no
checking for MPI-IO prototypes with const qualifier... yes
checking for shared libraries in MPI... no
configure: WARNING: mpicc doesn't support shared objects; disabling LD_PRELOAD library
checking for MPIO_Request... yes
checking for old (pre-3.1.1) style MPICH library naming convention... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-mk-log-dirs.pl
config.status: creating darshan-gen-cc.pl
config.status: creating darshan-gen-cxx.pl
config.status: creating darshan-gen-fortran.pl
config.status: creating darshan-config
config.status: creating share/craype-1.x/darshan-module
config.status: creating share/craype-2.x/darshan-module
config.status: creating lib/pkgconfig/darshan-runtime.pc
config.status: creating share/mpi-profile/darshan-cc.conf
config.status: creating share/mpi-profile/darshan-cxx.conf
config.status: creating share/mpi-profile/darshan-f.conf
config.status: creating share/mpi-profile/darshan-bg-cc.conf
config.status: creating share/mpi-profile/darshan-bg-cxx.conf
config.status: creating share/mpi-profile/darshan-bg-f.conf
config.status: creating share/ld-opts/darshan-base-ld-opts
config.status: creating darshan-runtime-config.h
config.status: darshan-runtime-config.h is unchanged
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... yes
checking if bzlib is wanted... yes
checking for BZ2_bzCompressInit in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for BZ2_bzCompressInit in -lbz2... (cached) yes
checking bzlib in /usr... ok
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for inttypes.h... (cached) yes
checking for pdflatex... yes
checking for -halt-on-error argument to pdflatex... yes
checking whether byte ordering is bigendian... no
checking for off64_t... yes
checking for strndup... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating darshan-job-summary/bin/darshan-job-summary.pl
config.status: creating maint/darshan-util.pc
config.status: creating darshan-util-config.h
config.status: darshan-util-config.h is unchanged
[darshan-master-mpich-3.0.4-profile-conf] $ /bin/bash /tmp/hudson2120583545553885418.sh
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib>
install -m 755 lib/libdarshan.a <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib>
install -m 755 lib/libdarshan-stubs.a <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-mk-log-dirs.pl <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-gen-cc.pl <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-gen-cxx.pl <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-gen-fortran.pl <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-config <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/craype-1.x/modulefiles/darshan>
install -m 755 share/craype-1.x/darshan-module <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/craype-1.x/modulefiles/darshan/3.0.1>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/craype-2.x/modulefiles/darshan>
install -m 755 share/craype-2.x/darshan-module <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/craype-2.x/modulefiles/darshan/3.0.1>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/mpi-profile>
install -m 755 share/mpi-profile/darshan-cc.conf <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/mpi-profile/darshan-cc.conf>
install -m 755 share/mpi-profile/darshan-cxx.conf <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/mpi-profile/darshan-cxx.conf>
install -m 755 share/mpi-profile/darshan-f.conf <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/mpi-profile/darshan-f.conf>
install -m 755 share/mpi-profile/darshan-bg-cc.conf <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/mpi-profile/darshan-bg-cc.conf>
install -m 755 share/mpi-profile/darshan-bg-cxx.conf <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/mpi-profile/darshan-bg-cxx.conf>
install -m 755 share/mpi-profile/darshan-bg-f.conf <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/mpi-profile/darshan-bg-f.conf>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/ld-opts>
install -m 644 share/ld-opts/darshan-base-ld-opts <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/ld-opts/darshan-base-ld-opts>
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-posix-ld-opts <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/ld-opts/darshan-posix-ld-opts>
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-hdf5-ld-opts <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/ld-opts/darshan-hdf5-ld-opts>
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-pnetcdf-ld-opts <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/ld-opts/darshan-pnetcdf-ld-opts>
install -m 644 ../../darshan-runtime/share/ld-opts/darshan-stdio-ld-opts <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share/ld-opts/darshan-stdio-ld-opts>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/pkgconfig>
install -m 644 lib/pkgconfig/darshan-runtime.pc <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/pkgconfig/darshan-runtime.pc>
make: Nothing to be done for `all'.
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/pkgconfig>
install -m 755 darshan-analyzer <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-convert <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-diff <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-parser <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 darshan-merge <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 ../../darshan-util/darshan-summary-per-file.sh <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -m 755 libdarshan-util.a <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib>
install -m 644 ../../darshan-util/darshan-logutils.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/darshan-posix-logutils.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/darshan-mpiio-logutils.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/darshan-hdf5-logutils.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/darshan-pnetcdf-logutils.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/darshan-bgq-logutils.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/darshan-null-logutils.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/darshan-stdio-logutils.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/../darshan-null-log-format.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/../darshan-posix-log-format.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/../darshan-mpiio-log-format.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/../darshan-hdf5-log-format.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/../darshan-pnetcdf-log-format.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/../darshan-bgq-log-format.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 644 ../../darshan-util/../darshan-stdio-log-format.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include/uthash-1.9.2>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include/uthash-1.9.2/src>
install -m 644 uthash-1.9.2/src/uthash.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include/uthash-1.9.2/src/>
install -m 644 ../../darshan-util/../darshan-log-format.h <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/include>
install -m 755 darshan-job-summary/bin/darshan-job-summary.pl <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/bin>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/TeX>
install -m 644 ../../darshan-util/darshan-job-summary/lib/TeX/Encode.pm <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/TeX/>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/Number>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/Number/Bytes>
install -m 644 ../../darshan-util/darshan-job-summary/lib/Number/Bytes/Human.pm <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/Number/Bytes>
install -d <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share>
install -m 644 ../../darshan-util/darshan-job-summary/share/* <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/share>
install -m 644 maint/darshan-util.pc <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/install/lib/pkgconfig>
[darshan-master-mpich-3.0.4-profile-conf] $ /bin/bash /tmp/hudson2763268107285885276.sh
Running <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/darshan-test/regression/test-cases/cxxpi.sh...>
Process 3 of 4 is on trounce
Process 2 of 4 is on trounce
Process 0 of 4 is on trounce
pi is approximately 3.14159 Error is 8.33331e-10
wall clock time = 0.000702143
Process 1 of 4 is on trounce
Done.
Running <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/darshan-test/regression/test-cases/fperf-f77.sh...>
 Access size per process =      4194304  bytes, ntimes =            5
 Write bandwidth without file sync =    1233.1115581548383       Mbytes/sec
 Read bandwidth without prior file sync =    2043.9393568509354       Mbytes/sec
 Write bandwidth including file sync =    89.563900124559297       Mbytes/sec
 Read bandwidth after file sync =    2046.9121001123974       Mbytes/sec
Done.
Running <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/darshan-test/regression/test-cases/fperf-f90.sh...>
 Access size per process =      4194304  bytes, ntimes =            5
 Write bandwidth without file sync =    1191.8421492778700       Mbytes/sec
 Read bandwidth without prior file sync =    2006.3508732547543       Mbytes/sec
 Write bandwidth including file sync =    82.432395534565529       Mbytes/sec
 Read bandwidth after file sync =    2526.4332092652139       Mbytes/sec
Done.
Running <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/darshan-test/regression/test-cases/fprintf-fscanf-test.sh...>
# Using stdio calls.
Done.
Running <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/darshan-test/regression/test-cases/mpi-io-test.sh...>
# Using mpi-io calls.
nr_procs = 4, nr_iter = 1, blk_sz = 16777216, coll = 0
# total_size = 67108864
# Write: min_t = 0.014438, max_t = 0.049092, mean_t = 0.031680, var_t = 0.000221
# Read:  min_t = 0.022710, max_t = 0.043626, mean_t = 0.034546, var_t = 0.000110
Write bandwidth = 1366.993884 Mbytes/sec
Read bandwidth = 1538.282745 Mbytes/sec
Done.
Running <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/darshan-test/regression/test-cases/stdio-test.sh...>
# Using stdio calls.
Error: STDIO open count of 0 is incorrect
Error: failed to execute test case <https://jenkins-ci.mcs.anl.gov/job/darshan-master-mpich-3.0.4-profile-conf/ws/darshan-test/regression/test-cases/stdio-test.sh>
Done.
1 tests failed
Build step 'Execute shell' marked build as failure
Recording test results

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