[Darshan-commits] [Darshan] branch, master, updated. darshan-2.3.1-pre2-6-g3cd66a9

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- Log -----------------------------------------------------------------
commit 3cd66a93b5f8d2cb6725e5302f64da8163e6adce
Author: Phil Carns <carns at mcs.anl.gov>
Date:   Fri Mar 13 14:43:35 2015 +0000

    bluegend profile testing environment

-----------------------------------------------------------------------

Summary of changes:
 .../env.sh                                         |   15 ++++++-----
 darshan-test/regression/bg-profile-conf/runjob.sh  |   26 ++++++++++++++++++++
 2 files changed, 34 insertions(+), 7 deletions(-)
 copy darshan-test/regression/{workstation-profile-conf => bg-profile-conf}/env.sh (66%)
 create mode 100755 darshan-test/regression/bg-profile-conf/runjob.sh


Diff of changes:
diff --git a/darshan-test/regression/workstation-profile-conf/env.sh b/darshan-test/regression/bg-profile-conf/env.sh
similarity index 66%
copy from darshan-test/regression/workstation-profile-conf/env.sh
copy to darshan-test/regression/bg-profile-conf/env.sh
index 0147783..df4f16b 100755
--- a/darshan-test/regression/workstation-profile-conf/env.sh
+++ b/darshan-test/regression/bg-profile-conf/env.sh
@@ -16,23 +16,24 @@
 # variables (as in a dynamically linked environment), or generate mpicc
 # wrappers (as in a statically linked environment).
 
-# Notes specific to this platform (workstation-dynamic)_
+# Notes specific to this platform (bg-profile-conf)
 ########################
 # This particular env script assumes that mpicc and its variants for other 
 # languages are already in the path, and that they will produce static 
 # executables by default.  Darshan instrumentation is added by specifying
 # a profiling configuration file using environment variables.
 
-# The runjob command is just mpiexec, no scheduler
+# the RUNJOB command is the most complex part here.  We use a script that submits
+# a cobalt job, waits for its completion, and checks its return status
 
 export DARSHAN_CC=mpicc
 export DARSHAN_CXX=mpicxx
 export DARSHAN_F77=mpif77
 export DARSHAN_F90=mpif90
 
-export MPICC_PROFILE=$DARSHAN_PATH/share/mpi-profile/darshan-cc
-export MPICXX_PROFILE=$DARSHAN_PATH/share/mpi-profile/darshan-cxx
-export MPIF90_PROFILE=$DARSHAN_PATH/share/mpi-profile/darshan-f
-export MPIF77_PROFILE=$DARSHAN_PATH/share/mpi-profile/darshan-f
+export MPICC_PROFILE=$DARSHAN_PATH/share/mpi-profile/darshan-bg-cc
+export MPICXX_PROFILE=$DARSHAN_PATH/share/mpi-profile/darshan-bg-cxx
+export MPIF90_PROFILE=$DARSHAN_PATH/share/mpi-profile/darshan-bg-f
+export MPIF77_PROFILE=$DARSHAN_PATH/share/mpi-profile/darshan-bg-f
 
-export DARSHAN_RUNJOB="mpiexec -n $DARSHAN_DEFAULT_NPROCS"
+export DARSHAN_RUNJOB="bg-profile-conf/runjob.sh"
diff --git a/darshan-test/regression/bg-profile-conf/runjob.sh b/darshan-test/regression/bg-profile-conf/runjob.sh
new file mode 100755
index 0000000..d21c8bb
--- /dev/null
+++ b/darshan-test/regression/bg-profile-conf/runjob.sh
@@ -0,0 +1,26 @@
+#!/bin/bash
+
+# submit job and get job id
+jobid=`qsub --mode c16 --proccount $DARSHAN_DEFAULT_NPROCS -A SSSPPg -t 10 -n 1 --output $DARSHAN_TMP/$$-tmp.out --error $DARSHAN_TMP/$$-tmp.err --debuglog $DARSHAN_TMP/$$-tmp.debuglog "$@"`
+if [ $? -ne 0 ]; then
+	echo "Error: failed to qsub $@"
+	exit 1
+fi
+
+output="foo"
+rc=0
+
+# loop as long as qstat succeeds and shows information about job
+while [ -n "$output" -a "$rc" -eq 0 ]; do
+	sleep 5
+	output=`qstat $jobid`
+	rc=$?
+done
+
+# look for return code
+grep "exit code of 0" $$-tmp.debuglog
+if [ $? -ne 0 ]; then
+	exit 1
+else
+	exit 0
+fi


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