[petsc-users] reproduced the problem

[Povolotskyi, Mykhailo]

Hello Satish,

I did what you suggested, now the error is different:


     UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for 
details):
-------------------------------------------------------------------------------
Cannot use SuperLU_DIST without enabling C++11, see --with-cxx-dialect=C++11
*******************************************************************************

The updated configure.log is here:

https://www.dropbox.com/s/tmkksemu294j719/configure.log?dl=0

On 9/20/2019 4:32 PM, Balay, Satish wrote:
> ================================================================================
> TEST checkRuntimeIssues from config.packages.BlasLapack(/depot/kildisha/apps/brown/nemo5/libs/petsc/build-real3.11/config/BuildSystem/config/packages/BlasLapack.py:579)
> TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:579)
>    Determines if BLAS/LAPACK routines use 32 or 64 bit integers
> Checking if BLAS/LAPACK routines use 32 or 64 bit integersExecuting: mpicc -c -o /tmp/petsc-wf99X2/config.packages.BlasLapack/conftest.o -I/tmp/petsc-wf99X2/config.setCompilers -I/tmp/petsc-wf99X2/config.compilers -I/tmp/petsc-wf99X2/config.utilities.closure -I/tmp/petsc-wf99X2/config.headers -I/tmp/petsc-wf99X2/config.utilities.cacheDetails -I/tmp/petsc-wf99X2/config.atomics -I/tmp/petsc-wf99X2/config.libraries -I/tmp/petsc-wf99X2/config.functions -I/tmp/petsc-wf99X2/config.utilities.featureTestMacros -I/tmp/petsc-wf99X2/config.utilities.missing -I/tmp/petsc-wf99X2/config.types -I/tmp/petsc-wf99X2/config.packages.MPI -I/tmp/petsc-wf99X2/config.packages.valgrind -I/tmp/petsc-wf99X2/config.packages.pthread -I/tmp/petsc-wf99X2/config.packages.metis -I/tmp/petsc-wf99X2/config.packages.hdf5 -I/tmp/petsc-wf99X2/config.packages.BlasLapack -fopenmp -fPIC  /tmp/petsc-wf99X2/config.packages.BlasLapack/conftest.c
> Successful compile:
> Source:
> #include "confdefs.h"
> #include "conffix.h"
> #include <sys/types.h>
> #if STDC_HEADERS
> #include <stdlib.h>
> #include <stdio.h>
> #include <stddef.h>
> #endif
>
> int main() {
> FILE *output = fopen("runtimetestoutput","w");
> extern double ddot_(const int*,const double*,const int *,const double*,const int*);
>                    double x1mkl[4] = {3.0,5.0,7.0,9.0};
>                    int one1mkl = 1,nmkl = 2;
>                    double dotresultmkl = 0;
>                    dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl);
>                    fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);;
>    return 0;
> }
> Executing: mpicc  -o /tmp/petsc-wf99X2/config.packages.BlasLapack/conftest   -fopenmp -fPIC /tmp/petsc-wf99X2/config.packages.BlasLapack/conftest.o -L/apps/cent7/intel/compilers_and_libraries_2017.1.132/linux/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core -lm -lstdc++ -ldl -L/apps/brown/openmpi.20190215/2.1.6_gcc-5.2.0/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -L/apps/cent7/gcc/5.2.0/lib/gcc/x86_64-unknown-linux-gnu/5.2.0 -L/apps/cent7/gcc/5.2.0/lib64 -L/apps/cent7/gcc/5.2.0/lib -Wl,-rpath,/apps/brown/openmpi.20190215/2.1.6_gcc-5.2.0/lib -lgfortran -lm -lgomp -lgcc_s -lquadmath -lpthread -lstdc++ -ldl
> Testing executable /tmp/petsc-wf99X2/config.packages.BlasLapack/conftest to see if it can be run
> Executing: /tmp/petsc-wf99X2/config.packages.BlasLapack/conftest
> Executing: /tmp/petsc-wf99X2/config.packages.BlasLapack/conftest
> ERROR while running executable: Could not execute "['/tmp/petsc-wf99X2/config.packages.BlasLapack/conftest']":
> /tmp/petsc-wf99X2/config.packages.BlasLapack/conftest: error while loading shared libraries: libmkl_intel_lp64.so: cannot open shared object file: No such file or directory
>
>                  Defined "HAVE_64BIT_BLAS_INDICES" to "1"
> Checking for 64 bit blas indices: program did not return therefor assuming 64 bit blas indices
>              Defined "HAVE_LIBMKL_INTEL_ILP64" to "1"
>
> <<<<<<<<
>
> So this test has an error but yet the flag HAVE_64BIT_BLAS_INDICES is set.
>
> Is your compiler not returning correct error codes?
>
> Does it make a difference if you also specify -Wl,-rpath along with -L in --with-blaslapack-lib option?
>
>
> Satish
>
> On Fri, 20 Sep 2019, Povolotskyi, Mykhailo wrote:
>
>> Dear Matthew and Satish,
>>
>> I just wrote that the error disappeared, but it still exists (I had to
>> wait longer).
>>
>> The configuration log can be accessed here:
>>
>> https://www.dropbox.com/s/tmkksemu294j719/configure.log?dl=0
>>
>> Sorry for the last e-mail.
>>
>> Michael.
>>
>>
>> On 09/20/2019 03:53 PM, Balay, Satish wrote:
>>> --with-64-bit-indices=1 => PetscInt = int64_t
>>> --known-64-bit-blas-indices=1 => blas specified uses 64bit indices.
>>>
>>> What is your requirement (use case)?
>>>
>>> Satish
>>>
>>> On Fri, 20 Sep 2019, Povolotskyi, Mykhailo via petsc-users wrote:
>>>
>>>> Does it mean I have to configure petsc with --with-64-bit-indices=1 ?
>>>>
>>>> On 09/20/2019 03:41 PM, Matthew Knepley wrote:
>>>> On Fri, Sep 20, 2019 at 1:55 PM Povolotskyi, Mykhailo via petsc-users <petsc-users at mcs.anl.gov<mailto:petsc-users at mcs.anl.gov>> wrote:
>>>> Hello,
>>>>
>>>> I'm upgrading petsc from 3.8 to 3.11.
>>>>
>>>> In doing so, I see an error message:
>>>>
>>>>     UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
>>>> -------------------------------------------------------------------------------
>>>> Cannot use SuperLU_DIST with 64 bit BLAS/Lapack indices
>>>> *******************************************************************************
>>>>
>>>> I wonder why this configuration step worked well for 3.8?  I did not
>>>> change anything else but version of petsc.
>>>>
>>>> This never worked. We are just checking now.
>>>>
>>>>     Thanks,
>>>>
>>>>       Matt
>>>>
>>>> Thank you,
>>>>
>>>> Michael.
>>>>
>>>>
>>>>
>>>> --
>>>> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
>>>> -- Norbert Wiener
>>>>
>>>> https://www.cse.buffalo.edu/~knepley/<http://www.cse.buffalo.edu/%7Eknepley/>
>>>>
>>>>
>>