[petsc-users] Error running configure on SOWING

[Danyang Su]

Hi Barry,

With both --download-sowing-cc= and --download-sowing-cxx= specified, it 
can be configured now.

Thanks as always for all your help,

Danyang

On 2019-09-10 11:19 a.m., Smith, Barry F. wrote:
>    Ahh, sorry it also needs the C++ compiler provided with --download-sowing-cxx= something
>
>
>> On Sep 10, 2019, at 1:11 PM, Danyang Su <danyang.su at gmail.com> wrote:
>>
>> Sorry I forgot to attached the log file.
>>
>> Attached are the log files using the following configuration:
>>
>> ./configure COPTFLAGS="-march=native -O2" CXXOPTFLAGS="-march=native -O2" FOPTFLAGS="-march=native -O2" --with-scalapack=1 --with-scalapack-lib="[/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so,/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so]" --download-parmetis=1 --download-metis=1 --download-ptscotch=1 --download-fblaslapack=1 --download-hypre=1 --download-superlu_dist=1 --with-hdf5=1 --with-hdf5-dir=/scinet/niagara/software/2019a/opt/intel-2019.1-intelmpi-2019.1/hdf5-mpi/1.10.4 --download-zlib=1 --download-szlib=1 --download-ctetgen=1 --with-debugging=0 --with-cxx-dialect=C++11 --with-mpi-dir=/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mpi/intel64 --download-sowing-cc=/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/bin/intel64/icc
>>
>> Thanks,
>>
>> Danyang
>>
>> On 2019-09-10 11:03 a.m., Smith, Barry F. wrote:
>>>    Please send the configure.log file when run with --download-sowing-cc=yourCcompiler  and also $PETSC_ARCH/externalpackages/git.sowing/config.log this will tell us why it is rejecting the C compiler.
>>>
>>>     Barry
>>>
>>>
>>>> On Sep 10, 2019, at 12:43 PM, Danyang Su via petsc-users <petsc-users at mcs.anl.gov> wrote:
>>>>
>>>> Dear All,
>>>>
>>>> I am trying to install petsc-dev on a cluster with intel compiler. However, the configuration get stuck on SOWING.
>>>>
>>>> Error running configure on SOWING: Could not execute "['./configure --prefix=/home/m/min3p/danyangs/soft/petsc/petsc-dev/linux-intel-opt']":
>>>> checking for ranlib... ranlib
>>>> checking for a BSD-compatible install... /usr/bin/install -c
>>>> checking whether install works... yes
>>>> checking for ar... ar
>>>> checking for gcc... no
>>>> checking for cc... no
>>>> checking for cl.exe... noconfigure: error: in `/gpfs/fs1/home/m/min3p/danyangs/soft/petsc/petsc-dev/linux-intel-opt/externalpackages/git.sowing':
>>>> configure: error: no acceptable C compiler found in $PATH
>>>> See `config.log' for more details
>>>>
>>>> Actually the C compiler is there.
>>>>
>>>> If I use GNU compiler, there is no problem. I also tried to use different sowing configuration as discussed on https://lists.mcs.anl.gov/pipermail/petsc-dev/2018-June/023070.html, but without success.
>>>>
>>>> The configuration is
>>>>
>>>> ./configure COPTFLAGS="-march=native -O2" CXXOPTFLAGS="-march=native -O2" FOPTFLAGS="-march=native -O2" --with-scalapack=1 --with-scalapack-lib="[/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so,/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so]" --download-parmetis=1 --download-metis=1 --download-ptscotch=1 --download-fblaslapack=1 --download-hypre=1 --download-superlu_dist=1 --with-hdf5=1 --with-hdf5-dir=/scinet/niagara/software/2019a/opt/intel-2019.1-intelmpi-2019.1/hdf5-mpi/1.10.4 --download-zlib=1 --download-szlib=1 --download-ctetgen=1 --with-debugging=0 --with-cxx-dialect=C++11 --with-mpi-dir=/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mpi/intel64 -download-sowing
>>>>
>>>> Any suggestion on this?
>>>>
>>>> Thanks and regards,
>>>>
>>>> danyang
>>>>
>>>>
>>>>
>> <configure.log><sowing-config.log>