[petsc-users] Error running configure on SOWING

Danyang Su danyang.su at gmail.com
Tue Sep 10 12:43:56 CDT 2019


Dear All,

I am trying to install petsc-dev on a cluster with intel compiler. 
However, the configuration get stuck on SOWING.

Error running configure on SOWING: Could not execute "['./configure 
--prefix=/home/m/min3p/danyangs/soft/petsc/petsc-dev/linux-intel-opt']":
checking for ranlib... ranlib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ar... ar
checking for gcc... no
checking for cc... no
checking for cl.exe... noconfigure: error: in 
`/gpfs/fs1/home/m/min3p/danyangs/soft/petsc/petsc-dev/linux-intel-opt/externalpackages/git.sowing':
configure: error: no acceptable C compiler found in $PATH
See `config.log' for more details

Actually the C compiler is there.

If I use GNU compiler, there is no problem. I also tried to use 
different sowing configuration as discussed on 
https://lists.mcs.anl.gov/pipermail/petsc-dev/2018-June/023070.html, but 
without success.

The configuration is

./configure COPTFLAGS="-march=native -O2" CXXOPTFLAGS="-march=native 
-O2" FOPTFLAGS="-march=native -O2" --with-scalapack=1 
--with-scalapack-lib="[/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so,/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so]" 
--download-parmetis=1 --download-metis=1 --download-ptscotch=1 
--download-fblaslapack=1 --download-hypre=1 --download-superlu_dist=1 
--with-hdf5=1 
--with-hdf5-dir=/scinet/niagara/software/2019a/opt/intel-2019.1-intelmpi-2019.1/hdf5-mpi/1.10.4 
--download-zlib=1 --download-szlib=1 --download-ctetgen=1 
--with-debugging=0 --with-cxx-dialect=C++11 
--with-mpi-dir=/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mpi/intel64 
-download-sowing

Any suggestion on this?

Thanks and regards,

danyang





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