[petsc-users] Configuration process of Petsc hanging

[Ma, Xiao]

Hi ,

I am trying to install Pylith which is a earthquake simulator using Petsc library, I am building it in PSC bridge cluster, during the steps of building Petsc, the configuration hanging at

TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247)


I am not sure if this has to with the configuration setup of the mpi version I am using.

Any help would be deeply appreciated.

I am attaching the configure options here:


Saving to: ‘petsc-pylith-2.2.1.tgz’

100%[===========================================================>] 10,415,016  37.3MB/s   in 0.3s

2019-05-31 14:03:13 (37.3 MB/s) - ‘petsc-pylith-2.2.1.tgz’ saved [10415016/10415016]

FINISHED --2019-05-31 14:03:13--
Total wall clock time: 1.1s
Downloaded: 1 files, 9.9M in 0.3s (37.3 MB/s)
/usr/bin/tar -zxf petsc-pylith-2.2.1.tgz
cd petsc-pylith && \
        ./configure --prefix=/home/xm12345/pylith \
                --with-c2html=0 --with-x=0 \
                --with-clanguage=C \
                --with-mpicompilers=1 \
                --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 \
                --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1    --with                     -debugging=0  --with-fc=0 CPPFLAGS="-I/home/xm12345/pylith/include -I/home/xm12345/pylith/include " L                     DFLAGS="-L/home/xm12345/pylith/lib -L/home/xm12345/pylith/lib64 -L/home/xm12345/pylith/lib -L/home/xm                     12345/pylith/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS="" \
                PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith PETSC_ARCH=arch-pylith && \
        make -f gmakefile -j2 PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith PETSC_ARCH=arch-pylit                     h && \
        make PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith install && \
        make PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith test && \
        touch ../installed_petsc
===============================================================================
             Configuring PETSc to compile on your system
===============================================================================
===============================================================================                                                 ***** WARNING: MAKEFLAGS (set to w) found in environment variables - ignoring                                              use ./configure MAKEFLAGS=$MAKEFLAGS if you really want to use that value ******                                   ===============================================================================                                           ===============================================================================                                                           WARNING! Compiling PETSc with no debugging, this should                                                                         only be done for timing and production runs. All development should                                                       be done when configured using --with-debugging=1                                                    ===============================================================================                                           TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247)


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