[petsc-users] mat_type MATSEQAIJCUSPARSE not recognized
Matthew Knepley
knepley at gmail.com
Mon Jan 28 13:42:27 CST 2019
On Mon, Jan 28, 2019 at 2:36 PM Najeeb Ahmad <nahmad16 at ku.edu.tr> wrote:
> Dear Matthew,
>
> Please find attached configure.log
>
> On Mon, Jan 28, 2019 at 10:32 PM Matthew Knepley <knepley at gmail.com>
> wrote:
>
>> Send your configure.log
>>
>> Thanks,
>>
>> Matt
>>
>> On Mon, Jan 28, 2019 at 2:05 PM Najeeb Ahmad via petsc-users <
>> petsc-users at mcs.anl.gov> wrote:
>>
>>>
>>> Dear all,
>>>
>>> I am trying to use PETSc with GPU. I have followed instructions laid
>>> down at https://www.mcs.anl.gov/petsc/features/gpus.html. When I run my
>>> code, it doesn't recognize the mat_type MATSEQAIJCUSPARSE. Here is the log:
>>>
>>> mpiexec -n 1 ./GMRES_PETSc -fin ../MM2PETScMatConverter/HV15R.bin
>>> -ksp_monitor -pc_type ilu -pc_factor_levels 0 -ksp_gmres_restart 200
>>> -ksp_gmres_preallocate -vec_type VECSEQCUDA -mat_type MATSEQAIJCUSPARSE
>>>
>>
I was not looking closely enough last time. The options are
-vec_type seqcuda -mat_type mpiaijcusparse
Thanks,
Matt
> Processes: 1
>>> [0]PETSC ERROR: --------------------- Error Message
>>> --------------------------------------------------------------
>>> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing
>>> package:
>>> http://www.mcs.anl.gov/petsc/documentation/installation.html#external
>>> [0]PETSC ERROR: Unknown Mat type given: MATSEQAIJCUSPARSE
>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>> for trouble shooting.
>>> [0]PETSC ERROR: Petsc Development GIT revision:
>>> v3.10.3-1369-g58fe69bfc8 GIT Date: 2019-01-25 22:25:25 -0600
>>> [0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
>>> ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
>>> [0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
>>> --with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
>>> [0]PETSC ERROR: #1 MatSetType() line 61 in
>>> /home/ubuntu/petsc/src/mat/interface/matreg.c
>>> [0]PETSC ERROR: #2 MatSetFromOptions() line 230 in
>>> /home/ubuntu/petsc/src/mat/utils/gcreate.c
>>> [0]PETSC ERROR: #3 main() line 48 in
>>> /home/ubuntu/koc-aramco/src_GPU/GMRES_PETSc/main.c
>>> [0]PETSC ERROR: PETSc Option Table entries:
>>> [0]PETSC ERROR: -fin ../MM2PETScMatConverter/HV15R.bin
>>> [0]PETSC ERROR: -ksp_gmres_preallocate
>>> [0]PETSC ERROR: -ksp_gmres_restart 200
>>> [0]PETSC ERROR: -ksp_monitor
>>> [0]PETSC ERROR: -mat_type MATSEQAIJCUSPARSE
>>> [0]PETSC ERROR: -pc_factor_levels 0
>>> [0]PETSC ERROR: -pc_type ilu
>>> [0]PETSC ERROR: -vec_type VECSEQCUDA
>>> [0]PETSC ERROR: ----------------End of Error Message -------send entire
>>> error message to petsc-maint at mcs.anl.gov----------
>>> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0
>>> [cli_0]: readline failed
>>> [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
>>> batch system) has told this process to end
>>> [0]PETSC ERROR: Try option -start_in_debugger or
>>> -on_error_attach_debugger
>>> [0]PETSC ERROR: or see
>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
>>> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
>>> OS X to find memory corruption errors
>>> [0]PETSC ERROR: likely location of problem given in stack below
>>> [0]PETSC ERROR: --------------------- Stack Frames
>>> ------------------------------------
>>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
>>> available,
>>> [0]PETSC ERROR: INSTEAD the line number of the start of the
>>> function
>>> [0]PETSC ERROR: is given.
>>> [0]PETSC ERROR: [0] PetscError line 352
>>> /home/ubuntu/petsc/src/sys/error/err.c
>>> [0]PETSC ERROR: [0] MatSetType line 42
>>> /home/ubuntu/petsc/src/mat/interface/matreg.c
>>> [0]PETSC ERROR: [0] MatSetFromOptions line 214
>>> /home/ubuntu/petsc/src/mat/utils/gcreate.c
>>> [0]PETSC ERROR: --------------------- Error Message
>>> --------------------------------------------------------------
>>> [0]PETSC ERROR: Signal received
>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>> for trouble shooting.
>>> [0]PETSC ERROR: Petsc Development GIT revision:
>>> v3.10.3-1369-g58fe69bfc8 GIT Date: 2019-01-25 22:25:25 -0600
>>> [0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
>>> ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
>>> [0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
>>> --with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
>>> [0]PETSC ERROR: #4 User provided function() line 0 in unknown file
>>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
>>> [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: Caught signal number 13 Broken Pipe: Likely while
>>> reading or writing to a socket
>>> [0]PETSC ERROR: Try option -start_in_debugger or
>>> -on_error_attach_debugger
>>> [0]PETSC ERROR: or see
>>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
>>> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac
>>> OS X to find memory corruption errors
>>> [0]PETSC ERROR: likely location of problem given in stack below
>>> [0]PETSC ERROR: --------------------- Stack Frames
>>> ------------------------------------
>>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
>>> available,
>>> [0]PETSC ERROR: INSTEAD the line number of the start of the
>>> function
>>> [0]PETSC ERROR: is given.
>>> [0]PETSC ERROR: [0] PetscError line 352
>>> /home/ubuntu/petsc/src/sys/error/err.c
>>> [0]PETSC ERROR: [0] MatSetType line 42
>>> /home/ubuntu/petsc/src/mat/interface/matreg.c
>>> [0]PETSC ERROR: [0] MatSetFromOptions line 214
>>> /home/ubuntu/petsc/src/mat/utils/gcreate.c
>>> [0]PETSC ERROR: --------------------- Error Message
>>> --------------------------------------------------------------
>>> [0]PETSC ERROR: Signal received
>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>> for trouble shooting.
>>> [0]PETSC ERROR: Petsc Development GIT revision:
>>> v3.10.3-1369-g58fe69bfc8 GIT Date: 2019-01-25 22:25:25 -0600
>>> [0]PETSC ERROR: ./GMRES_PETSc on a arch-linux2-c-debug named
>>> ip-172-31-86-226 by ubuntu Mon Jan 28 18:10:34 2019
>>> [0]PETSC ERROR: Configure options --with-cc=gcc --download-mpich
>>> --with-cuda=1 --with-cuda-dir=/usr/local/cuda-10.0/ --download-fblaslapack=1
>>> [0]PETSC ERROR: #5 User provided function() line 0 in unknown file
>>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
>>> [cli_0]: write_line error; fd=9 buf=:cmd=abort exitcode=59
>>> :
>>> system msg for write_line failure : Broken pipe
>>>
>>>
>>> Any help will be greatly appreciated.
>>>
>>> Regards,
>>>
>>> --
>>> *Najeeb Ahmad*
>>>
>>>
>>> *Research and Teaching Assistant*
>>> *PARallel and MultiCORE Computing Laboratory (ParCoreLab) *
>>>
>>> *Computer Science and Engineering*
>>> *Koç University, Istanbul, Turkey*
>>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>> https://www.cse.buffalo.edu/~knepley/
>> <http://www.cse.buffalo.edu/~knepley/>
>>
>
>
> --
> *Najeeb Ahmad*
>
>
> *Research and Teaching Assistant*
> *PARallel and MultiCORE Computing Laboratory (ParCoreLab) *
>
> *Computer Science and Engineering*
> *Koç University, Istanbul, Turkey*
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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