[petsc-users] Error with parallel solve

[Manav Bhatia]

BTW,  yes, I am using Mumps for the parallel direct solve. 

> On Apr 8, 2019, at 1:23 PM, Manav Bhatia <bhatiamanav at gmail.com> wrote:
> 
> Thanks for identifying this, Mark. 
> 
> If I compile the debug version of Petsc, will it also build a debug version of Mumps? 
> 
>> On Apr 8, 2019, at 12:58 PM, Mark Adams <mfadams at lbl.gov <mailto:mfadams at lbl.gov>> wrote:
>> 
>> This looks like an error in MUMPS:
>> 
>>         IF ( IROW_GRID .NE. root%MYROW .OR.
>>      &       JCOL_GRID .NE. root%MYCOL ) THEN
>>             WRITE(*,*) MYID,':INTERNAL Error: recvd root arrowhead '
>> 
>> On Mon, Apr 8, 2019 at 1:37 PM Smith, Barry F. via petsc-users <petsc-users at mcs.anl.gov <mailto:petsc-users at mcs.anl.gov>> wrote:
>>   Difficult to tell what is going on. 
>> 
>>   The message User provided function() line 0 in  unknown file  indicates the crash took place OUTSIDE of PETSc code and error message INTERNAL Error: recvd root arrowhead  is definitely not coming from PETSc. 
>> 
>>    Yes, debug with the debug version and also try valgrind.
>> 
>>    Barry
>> 
>> 
>> > On Apr 8, 2019, at 12:12 PM, Manav Bhatia via petsc-users <petsc-users at mcs.anl.gov <mailto:petsc-users at mcs.anl.gov>> wrote:
>> > 
>> > 
>> > Hi,
>> >   
>> >     I am running a code a nonlinear simulation using mesh-refinement on libMesh. The code runs without issues on a Mac (can run for days without issues), but crashes on Linux (Centos 6). I am using version 3.11 on Linux with openmpi 3.1.3 and gcc8.2. 
>> > 
>> >     I tried to use the -on_error_attach_debugger, but it only gave me this message. Does this message imply something to the more experienced eyes? 
>> > 
>> >     I am going to try to build a debug version of petsc to figure out what is going wrong. I will get and share more detailed logs in a bit. 
>> > 
>> > Regards,
>> > Manav
>> > 
>> > [8]PETSC ERROR: ------------------------------------------------------------------------
>> > [8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
>> > [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
>> > [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind <http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind>
>> > [8]PETSC ERROR: or try http://valgrind.org <http://valgrind.org/> on GNU/linux and Apple Mac OS X to find memory corruption errors
>> > [8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
>> > [8]PETSC ERROR: to get more information on the crash.
>> > [8]PETSC ERROR: User provided function() line 0 in  unknown file  
>> > PETSC: Attaching gdb to /cavs/projects/brg_codes/users/bhatia/mast/mast_topology/opt/examples/structural/example_5/structural_example_5 of pid 2108 on display localhost:10.0 on machine Warhawk1.HPC.MsState.Edu <http://warhawk1.hpc.msstate.edu/>
>> > PETSC: Attaching gdb to /cavs/projects/brg_codes/users/bhatia/mast/mast_topology/opt/examples/structural/example_5/structural_example_5 of pid 2112 on display localhost:10.0 on machine Warhawk1.HPC.MsState.Edu <http://warhawk1.hpc.msstate.edu/>
>> >            0 :INTERNAL Error: recvd root arrowhead 
>> >            0 :not belonging to me. IARR,JARR=       67525       67525
>> >            0 :IROW_GRID,JCOL_GRID=           0           4
>> >            0 :MYROW, MYCOL=           0           0
>> >            0 :IPOSROOT,JPOSROOT=    92264688    92264688
>> > --------------------------------------------------------------------------
>> > MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
>> > with errorcode -99.
>> > 
>> > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
>> > You may or may not see output from other processes, depending on
>> > exactly when Open MPI kills them.
>> > --------------------------------------------------------------------------
>> > 
>> 
> 

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