[petsc-users] DMDA with dimension of size 1

Phil Tooley phil.tooley at sheffield.ac.uk
Mon Oct 1 10:04:03 CDT 2018


Hi Patrick,

You are spot on, I was copying in a vector and not taking care to pad
with 1s to length 3.

Thanks

Phil

On 01/10/2018 15:57, Patrick Sanan wrote:
> Whoops, sent that patch too fast (forgot to update SETERRQ3 to
> SETERRQ4). Updated patch for maint attached.
>
> Am Mo., 1. Okt. 2018 um 16:55 Uhr schrieb Patrick Sanan
> <patrick.sanan at gmail.com <mailto:patrick.sanan at gmail.com>>:
>
>     Meshes of size 1 should work.
>
>     Looks like there is a bug in the code to produce this error
>     message (patch for maint attached). It's not outputting the "P"
>     (size in the 3rd dimension) component.
>
>     This is just speculation without a full error message or code to
>     reproduce, but perhaps the size in the third dimension is an
>     uninitialized value which is triggering this warning with a 10 x
>     10 x (huge garbage) x 1 (dof) mesh.
>
>     Am Mo., 1. Okt. 2018 um 15:59 Uhr schrieb Phil Tooley
>     <phil.tooley at sheffield.ac.uk <mailto:phil.tooley at sheffield.ac.uk>>:
>
>         Hi all,
>
>         Is it valid to have a DMDA with one of the dimensions of size
>         1.  I was
>         hoping to avoid having to write explicit logic to handle the
>         case that I
>         am working on a 2D rather than a 3D image for my current
>         application.  
>         Unfortunately when I try to construct such a DMDA I get an error:
>
>         [0]PETSC ERROR: --------------------- Error Message
>         --------------------------------------------------------------
>         [0]PETSC ERROR: Overflow in integer operation:
>         [0]PETSC ERROR: Mesh of 10 by 10 by 1 (dof) is too large for
>         32 bit indices
>
>         Is there a workaround other than "write everything twice"?
>
>         Thanks
>
>         Phil
>
>         -- 
>         Phil Tooley
>         Research Software Engineering
>         University of Sheffield
>
-- 
Phil Tooley
Research Software Engineering
University of Sheffield

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