From jroman at dsic.upv.es Tue Nov 1 06:14:38 2016 From: jroman at dsic.upv.es (Jose E. Roman) Date: Tue, 1 Nov 2016 12:14:38 +0100 Subject: [petsc-users] Provide Matrix Factorization to EPS for Generalized Eigenvalue Problem In-Reply-To: References: Message-ID: <78125C48-B577-479A-BC3C-C0E07EEAD0D1@dsic.upv.es> > El 31 oct 2016, a las 22:40, Peetz, Darin T escribi?: > > Hello, > > I'm wondering how I could go about providing a matrix factorization calculated in Petsc to the eigenvalue routines in Slepc. I'm trying to solve the eigenvalue problem for stability, where the solution to KU=F is needed to construct the A-matrix (K_sigma) in the eigenvalue problem. Since the eigenvalue problem is generalized, it seems like the best way to solve it is to factorize the B-Matrix (K, same as in KU=F) with a package like MUMPS and use a method in Slepc such as Krylov-Schur. Since I need to solve both KU=F and the eigenvalue problem, I'd like to compute the factorization of K first to solve KU=F, and then reuse it in the EPS routines. > > I've tried using EPSGetST() and STSetKSP() to provide the KSP object that I used to solve KU=F, but then for some reason when I change nonzero values in K (but not nonzero locations) Petsc redoes the symbolic factorization when I go to solve KU=F again (it's part of an optimization routine, so I'm solving both problems, updating parts of K, and repeating). This does provide the correct solution, and allows me to use the same factorization for KU=F and the eigenvalue problem, but the extra symbolic factorizations, while comparatively cheap, are unnecessary and ideally should be eliminated. If I skip the calls to EPSGetST() and STSetKSP(), the symbolic factorization for the KSP object associated with KU=F is only performed once, as it should be. Is there some option I'm overlooking, or maybe a better way to go about this? > > Thanks, > Darin I don't know what your code is doing exactly, but I tried to reproduce the behaviour in a SLEPc example and it works as expected. The attached example calls KSPSolve()+EPSSolve()+KSPSolve()+EPSSolve(), modifying B in the middle, and it computes just one symbolic factorization and two numeric factorizations. An alternative scheme would be the following: pass the matrices to EPS, call EPSSetUp(), then use EPSGetST()+STGetKSP() to extract the KSP object from EPS. This way you could solve linear systems without having to create the KSP object yourself. A second alternative would be to solve a standard eigenproblem with a shell matrix instead of a generalized eigenproblem. That is, instead of EPSSetOperators(A,B) do EPSSetOperators(S,NULL), where S is a shell matrix whose MATOP_MULT operation does a MatMult(A) followed by a KSPSolve(B). Jose -------------- next part -------------- A non-text attachment was scrubbed... Name: ex13.c Type: application/octet-stream Size: 7671 bytes Desc: not available URL: From Lukasz.Kaczmarczyk at glasgow.ac.uk Tue Nov 1 06:21:34 2016 From: Lukasz.Kaczmarczyk at glasgow.ac.uk (Lukasz Kaczmarczyk) Date: Tue, 1 Nov 2016 11:21:34 +0000 Subject: [petsc-users] fieldsplit - preconditioner mix Message-ID: <10DCA074-2769-4EE5-BA32-C8F38AA998A6@glasgow.ac.uk> Hello, I solve problems of identifying forces on the surface, which are results in displacements (measured) on some other surface. This technique is used in cell engineering where we can observe the movement of dots through transparent gels. That is unknown to us is tractions on the surface and stresses in the body. The body is composed of two materials, which two orders difference in stiffness. We constructed problem which gives the stable solution, works great with direct solvers like mumps or superlu_dist, however, we have the problem with scalability, for a larger number of processors and DOFs (>1m). The general system which we solving looks like this, [ K K K 0 ][u]=[0] [ K K K C ][u]=[0] [ K K K 0 ][u]=[0] [ 0 0 B 0 ][L]=[0] I am trying to use PCFIELDSPLIT however I have the problem which the best mix of preconditioners and set-up. I can converge for a very small problem, but overall efficiency is far from perfect. Note that matrices C, B are small compared to the block of K matrices. Block of K matrices is positive define and symmetric. Note that [0 0 B]*[ 0 C 0]^T = 0. Anyone have any advise what I can do with this. The full code can bee seen here http://mofem.eng.gla.ac.uk/mofem/html/cell__forces_8cpp.html Kind regards Lukasz From knepley at gmail.com Tue Nov 1 07:19:35 2016 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 1 Nov 2016 07:19:35 -0500 Subject: [petsc-users] fieldsplit - preconditioner mix In-Reply-To: <10DCA074-2769-4EE5-BA32-C8F38AA998A6@glasgow.ac.uk> References: <10DCA074-2769-4EE5-BA32-C8F38AA998A6@glasgow.ac.uk> Message-ID: On Tue, Nov 1, 2016 at 6:21 AM, Lukasz Kaczmarczyk < Lukasz.Kaczmarczyk at glasgow.ac.uk> wrote: > Hello, > > I solve problems of identifying forces on the surface, which are results > in displacements (measured) on some other surface. This technique is used > in cell engineering where we can observe the movement of dots through > transparent gels. That is unknown to us is tractions on the surface and > stresses in the body. > > The body is composed of two materials, which two orders difference in > stiffness. > > We constructed problem which gives the stable solution, works great with > direct solvers like mumps or superlu_dist, however, we have the problem > with scalability, for a larger number of processors and DOFs (>1m). > > The general system which we solving looks like this, > [ K K K 0 ][u]=[0] > [ K K K C ][u]=[0] > [ K K K 0 ][u]=[0] > [ 0 0 B 0 ][L]=[0] > > I am trying to use PCFIELDSPLIT however I have the problem which the best > mix of preconditioners and set-up. I can converge for a very small problem, > but overall efficiency is far from perfect. Note that matrices C, B are > small compared to the block of K matrices. Block of K matrices is positive > define and symmetric. Note that [0 0 B]*[ 0 C 0]^T = 0. > Always start from a known position. Can you run full Schur complement with an exact solve for K and very accurate solve for the Schur block? Does it converge in 1 iterate? That is the first step. Then you need to look at the two block solves. Generally, the hard part is solving the Schur block. Do you know what would be a good preconditioner? It looks like it could be worth directly forming your Schur complement. Thanks, Matt > Anyone have any advise what I can do with this. > > The full code can bee seen here > http://mofem.eng.gla.ac.uk/mofem/html/cell__forces_8cpp.html > > Kind regards > Lukasz -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From mfadams at lbl.gov Tue Nov 1 08:19:09 2016 From: mfadams at lbl.gov (Mark Adams) Date: Tue, 1 Nov 2016 09:19:09 -0400 Subject: [petsc-users] GAMG In-Reply-To: <1477933384.21553.15.camel@seamplex.com> References: <1477660420.2766.15.camel@seamplex.com> <1477661072.2766.22.camel@seamplex.com> <1477661923.2766.24.camel@seamplex.com> <1477911251.7699.19.camel@seamplex.com> <87h97svaqt.fsf@jedbrown.org> <1477933384.21553.15.camel@seamplex.com> Message-ID: > > > The labeling is right, I re-checked. That's the funny part, I can't get > GAMG to work with PCSetCoordinates (which BTW, I think its documentation > does not address the issue of DOF ordering). > Yep, this needs to be made clear. I guess people do actually look at the manual so I will add that. As far as symmetry and BCs. If all dofs are set at a node, so the node is all zero when you zero out BC's, then this should cause a problem in parallel (you may need several processor to hit the problem). You really should remove them from the matrix and adjust the RHS accordingly, but if you set -pc_gamg_threshold X to a negative number (default is zero) and keep the zeros in the matrix after zero out rows then it should work (the graph algorithms will keep your zero node so the graph is symmetric). -------------- next part -------------- An HTML attachment was scrubbed... URL: From peetz2 at illinois.edu Tue Nov 1 14:42:46 2016 From: peetz2 at illinois.edu (Peetz, Darin T) Date: Tue, 1 Nov 2016 19:42:46 +0000 Subject: [petsc-users] Provide Matrix Factorization to EPS for Generalized Eigenvalue Problem In-Reply-To: <78125C48-B577-479A-BC3C-C0E07EEAD0D1@dsic.upv.es> References: , <78125C48-B577-479A-BC3C-C0E07EEAD0D1@dsic.upv.es> Message-ID: Thank you for providing the example. I have managed to get it working properly; however, after looking at the example, I have one more question. First, let me provide a little background on how the code is set up. I have one function that takes care of solving the linear system of equations, and a separate one that takes care of the eigenvalue problem. The KSP object for the linear system is passed between both functions, and kept for the duration of the program to save some of the cost of factorizing the matrix each time. I have been keeping the EPS object local to the function that takes care of the eigenvalue problem since it is only relevant within that function, and I haven't seen a need to reuse the same EPS object in every iteration (I'm assuming the cost of creating the EPS object itself is relatively small). The reason for the extra symbolic factorizations seems to have been that when I destroyed the EPS object before it goes out of scope, it also destroys the underlying KSP object that I provided. Basically, I'm wondering if my assumption about the cost of creating the EPS object is correct. Is it okay to recreate the EPS object every time the eigenvalue function is called, or does this create a significant overhead? It seems that if I try to reuse the same EPS object I have to make sure I'm reusing the same A-matrix as well, or else the ST object redoes both the symbolic and numeric factorizations (so the same K matrix is numerically factorized twice in each iteration) each time. Thus I would be able to save a significant amount of memory if I could let the EPS object and A-matrix exist in a local scope. As a side note, I worked around the KSP destruction issue by providing an empty (uninitialized) KSP object to the EPS object after calling EPSSolve and extracting the eigenvalues/eigenvectors. This is functional but seems like a bad/crude approach. Is there a more elegant way to "free" the KSP object from the EPS object once it is no longer needed, or should I stick with this approach? Thanks a lot for your help, Darin ________________________________________ From: Jose E. Roman [jroman at dsic.upv.es] Sent: Tuesday, November 01, 2016 6:14 AM To: Peetz, Darin T Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Provide Matrix Factorization to EPS for Generalized Eigenvalue Problem > El 31 oct 2016, a las 22:40, Peetz, Darin T escribi?: > > Hello, > > I'm wondering how I could go about providing a matrix factorization calculated in Petsc to the eigenvalue routines in Slepc. I'm trying to solve the eigenvalue problem for stability, where the solution to KU=F is needed to construct the A-matrix (K_sigma) in the eigenvalue problem. Since the eigenvalue problem is generalized, it seems like the best way to solve it is to factorize the B-Matrix (K, same as in KU=F) with a package like MUMPS and use a method in Slepc such as Krylov-Schur. Since I need to solve both KU=F and the eigenvalue problem, I'd like to compute the factorization of K first to solve KU=F, and then reuse it in the EPS routines. > > I've tried using EPSGetST() and STSetKSP() to provide the KSP object that I used to solve KU=F, but then for some reason when I change nonzero values in K (but not nonzero locations) Petsc redoes the symbolic factorization when I go to solve KU=F again (it's part of an optimization routine, so I'm solving both problems, updating parts of K, and repeating). This does provide the correct solution, and allows me to use the same factorization for KU=F and the eigenvalue problem, but the extra symbolic factorizations, while comparatively cheap, are unnecessary and ideally should be eliminated. If I skip the calls to EPSGetST() and STSetKSP(), the symbolic factorization for the KSP object associated with KU=F is only performed once, as it should be. Is there some option I'm overlooking, or maybe a better way to go about this? > > Thanks, > Darin I don't know what your code is doing exactly, but I tried to reproduce the behaviour in a SLEPc example and it works as expected. The attached example calls KSPSolve()+EPSSolve()+KSPSolve()+EPSSolve(), modifying B in the middle, and it computes just one symbolic factorization and two numeric factorizations. An alternative scheme would be the following: pass the matrices to EPS, call EPSSetUp(), then use EPSGetST()+STGetKSP() to extract the KSP object from EPS. This way you could solve linear systems without having to create the KSP object yourself. A second alternative would be to solve a standard eigenproblem with a shell matrix instead of a generalized eigenproblem. That is, instead of EPSSetOperators(A,B) do EPSSetOperators(S,NULL), where S is a shell matrix whose MATOP_MULT operation does a MatMult(A) followed by a KSPSolve(B). Jose From bikash at umich.edu Tue Nov 1 23:09:33 2016 From: bikash at umich.edu (Bikash Kanungo) Date: Wed, 2 Nov 2016 00:09:33 -0400 Subject: [petsc-users] Inconsistent data Message-ID: Hi, I'm trying to perform several KSPSolve in sequence. After several successful runs I get the following error: [4]PETSC ERROR: Petsc has generated inconsistent data [4]PETSC ERROR: No more room in array, limit 256 recompile src/sys/objects/destroy.c with larger value for MAXREGDESOBJS [7]PETSC ERROR: #1 PetscObjectRegisterDestroy() line 228 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/objects/destroy.c [7]PETSC ERROR: #2 PetscViewerASCIIGetStdout() line 45 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c [2]PETSC ERROR: #3 PETSC_VIEWER_STDOUT_() line 81 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c\ [3]PETSC ERROR: #4 PetscObjectRegisterDestroy() line 228 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/objects/destroy.c [3]PETSC ERROR: #5 PetscViewerASCIIGetStdout() line 45 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c [4]PETSC ERROR: #6 PETSC_VIEWER_STDOUT_() line 81 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c [5]PETSC ERROR: #7 PetscObjectRegisterDestroy() line 228 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/objects/destroy.c [5]PETSC ERROR: #8 PetscViewerASCIIGetStdout() line 45 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c [5]PETSC ERROR: #9 PCView() line 1695 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/ksp/pc/interface/precon.c [5]PETSC ERROR: #10 KSPView() line 211 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/ksp/ksp/interface/itcreate.c I tried to be destroy the ksp object after each solve but to no avail. Can you provide some input on what might be causing the abort? Regards, Bikash -- Bikash S. Kanungo PhD Student Computational Materials Physics Group Mechanical Engineering University of Michigan -------------- next part -------------- An HTML attachment was scrubbed... URL: From jroman at dsic.upv.es Wed Nov 2 03:29:54 2016 From: jroman at dsic.upv.es (Jose E. Roman) Date: Wed, 2 Nov 2016 09:29:54 +0100 Subject: [petsc-users] Provide Matrix Factorization to EPS for Generalized Eigenvalue Problem In-Reply-To: References: <78125C48-B577-479A-BC3C-C0E07EEAD0D1@dsic.upv.es> Message-ID: <12F2588E-EB27-4667-8BF3-EE404B2BB520@dsic.upv.es> > El 1 nov 2016, a las 20:42, Peetz, Darin T escribi?: > > Thank you for providing the example. I have managed to get it working properly; however, after looking at the example, I have one more question. > > First, let me provide a little background on how the code is set up. I have one function that takes care of solving the linear system of equations, and a separate one that takes care of the eigenvalue problem. The KSP object for the linear system is passed between both functions, and kept for the duration of the program to save some of the cost of factorizing the matrix each time. I have been keeping the EPS object local to the function that takes care of the eigenvalue problem since it is only relevant within that function, and I haven't seen a need to reuse the same EPS object in every iteration (I'm assuming the cost of creating the EPS object itself is relatively small). The reason for the extra symbolic factorizations seems to have been that when I destroyed the EPS object before it goes out of scope, it also destroys the underlying KSP object that I provided. > > Basically, I'm wondering if my assumption about the cost of creating the EPS object is correct. Is it okay to recreate the EPS object every time the eigenvalue function is called, or does this create a significant overhead? It seems that if I try to reuse the same EPS object I have to make sure I'm reusing the same A-matrix as well, or else the ST object redoes both the symbolic and numeric factorizations (so the same K matrix is numerically factorized twice in each iteration) each time. Thus I would be able to save a significant amount of memory if I could let the EPS object and A-matrix exist in a local scope. > > As a side note, I worked around the KSP destruction issue by providing an empty (uninitialized) KSP object to the EPS object after calling EPSSolve and extracting the eigenvalues/eigenvectors. This is functional but seems like a bad/crude approach. Is there a more elegant way to "free" the KSP object from the EPS object once it is no longer needed, or should I stick with this approach? > > Thanks a lot for your help, > Darin STSetKSP() increases the reference count of the KSP object, so when EPS is destroyed, the KSP object remains. I don't understand why you need to provide an empty KSP. Regarding your question about recreating EPS, yes the cost can be considered small. Jose From bsmith at mcs.anl.gov Wed Nov 2 03:49:59 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 2 Nov 2016 03:49:59 -0500 Subject: [petsc-users] Inconsistent data In-Reply-To: References: Message-ID: <62B39CE2-7E8A-4675-92C2-446A7D718547@mcs.anl.gov> This is probably due to a bug in the way we were handling the PETSC_VIEWER_STDOUT in version 3.6. Can you try 3.7 and see if the problem goes away? Are you using monitor or view command line options? Barry > On Nov 1, 2016, at 11:09 PM, Bikash Kanungo wrote: > > Hi, > > I'm trying to perform several KSPSolve in sequence. After several successful runs I get the following error: > > [4]PETSC ERROR: Petsc has generated inconsistent data > [4]PETSC ERROR: No more room in array, limit 256 > recompile src/sys/objects/destroy.c with larger value for MAXREGDESOBJS > > [7]PETSC ERROR: #1 PetscObjectRegisterDestroy() line 228 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/objects/destroy.c > [7]PETSC ERROR: #2 PetscViewerASCIIGetStdout() line 45 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c > [2]PETSC ERROR: #3 PETSC_VIEWER_STDOUT_() line 81 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c\ > [3]PETSC ERROR: #4 PetscObjectRegisterDestroy() line 228 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/objects/destroy.c > [3]PETSC ERROR: #5 PetscViewerASCIIGetStdout() line 45 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c > [4]PETSC ERROR: #6 PETSC_VIEWER_STDOUT_() line 81 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c > [5]PETSC ERROR: #7 PetscObjectRegisterDestroy() line 228 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/objects/destroy.c > [5]PETSC ERROR: #8 PetscViewerASCIIGetStdout() line 45 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/sys/classes/viewer/impls/ascii/vcreatea.c > [5]PETSC ERROR: #9 PCView() line 1695 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/ksp/pc/interface/precon.c > [5]PETSC ERROR: #10 KSPView() line 211 in /home/bikash/fem_dft_softwares/petsc/petsc-3.6.3/src/ksp/ksp/interface/itcreate.c > > > I tried to be destroy the ksp object after each solve but to no avail. Can you provide some input on what might be causing the abort? > > Regards, > Bikash > -- > Bikash S. Kanungo > PhD Student > Computational Materials Physics Group > Mechanical Engineering > University of Michigan > From loic.gouarin at math.u-psud.fr Wed Nov 2 06:59:17 2016 From: loic.gouarin at math.u-psud.fr (Loic Gouarin) Date: Wed, 2 Nov 2016 12:59:17 +0100 Subject: [petsc-users] DMDA set dof Message-ID: <72dcba83-4747-0ae8-9595-e3dae872c1ba@math.u-psud.fr> Hi, I try to run this code #include int main(int argc, char **argv) { PetscErrorCode ierr; DM DApressure, DAvel; ierr = PetscInitialize(&argc, &argv, (char *)0, (char *)0);CHKERRQ(ierr); ierr = DMDACreate2d(PETSC_COMM_WORLD, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, 5, 5, PETSC_DECIDE, PETSC_DECIDE, 1, 1, 0, 0, &DApressure);CHKERRQ(ierr); ierr = DMRefine(DApressure, PETSC_COMM_WORLD, &DAvel); ierr = DMSetFromOptions(DAvel);CHKERRQ(ierr); ierr = DMSetUp(DAvel);CHKERRQ(ierr); ierr = DMDASetDof(DAvel, 2);CHKERRQ(ierr); ierr = PetscFinalize();CHKERRQ(ierr); return 0; } and I get the error that DAvel is in wrong state whereas I call SetUp as mentioned in the error message. It seems that it is not possible to redefine the dof number if it is already set. Could you confirm ? Thanks, Loic -- Tel: 01 69 15 60 14 http://www.math.u-psud.fr/~gouarin https://github.com/gouarin -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Wed Nov 2 07:28:13 2016 From: jed at jedbrown.org (Jed Brown) Date: Wed, 02 Nov 2016 06:28:13 -0600 Subject: [petsc-users] DMDA set dof In-Reply-To: <72dcba83-4747-0ae8-9595-e3dae872c1ba@math.u-psud.fr> References: <72dcba83-4747-0ae8-9595-e3dae872c1ba@math.u-psud.fr> Message-ID: <87d1ieqd5u.fsf@jedbrown.org> Loic Gouarin writes: > Hi, > > I try to run this code > > #include > > int main(int argc, char **argv) > { > PetscErrorCode ierr; > DM DApressure, DAvel; > > ierr = PetscInitialize(&argc, &argv, (char *)0, (char > *)0);CHKERRQ(ierr); > > ierr = DMDACreate2d(PETSC_COMM_WORLD, DM_BOUNDARY_NONE, > DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, > 5, 5, PETSC_DECIDE, PETSC_DECIDE, > 1, 1, 0, 0, &DApressure);CHKERRQ(ierr); > > ierr = DMRefine(DApressure, PETSC_COMM_WORLD, &DAvel); > ierr = DMSetFromOptions(DAvel);CHKERRQ(ierr); > ierr = DMSetUp(DAvel);CHKERRQ(ierr); > ierr = DMDASetDof(DAvel, 2);CHKERRQ(ierr); "This function must be called before DMSetUp()" > ierr = PetscFinalize();CHKERRQ(ierr); > > return 0; > } > > and I get the error that DAvel is in wrong state whereas I call SetUp as > mentioned in the error message. It seems that it is not possible to > redefine the dof number if it is already set. Could you confirm ? Correct. Create a new DM. When asking questions, *always* send the entire error message. -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 800 bytes Desc: not available URL: From peetz2 at illinois.edu Wed Nov 2 08:55:33 2016 From: peetz2 at illinois.edu (Peetz, Darin T) Date: Wed, 2 Nov 2016 13:55:33 +0000 Subject: [petsc-users] Provide Matrix Factorization to EPS for Generalized Eigenvalue Problem In-Reply-To: <12F2588E-EB27-4667-8BF3-EE404B2BB520@dsic.upv.es> References: <78125C48-B577-479A-BC3C-C0E07EEAD0D1@dsic.upv.es> , <12F2588E-EB27-4667-8BF3-EE404B2BB520@dsic.upv.es> Message-ID: I don't fully understand what the empty KSP is doing either, because it seems to me that if a KSP object was properly destroyed, KSPCreate() should have to be called again before it is used again, right? So it must not be fully destroyed or else the second linear system solve would fail, but something is happening to it such that the symbolic factorization is redone. Like I said, the fix I implemented seems to work (even if it doesn't seem necessary), so I don't know that it really needs any more attention. However, I was able to reproduce the behavior in the example you sent me. If you're curious, running the program as normal should behave the same way as the original example. Running with the option "-destroy_eps" destroys and recreates the EPS object, and running with the additional option "-empty_ksp" gives the EPS object an empty KSP before it is destroyed. At least when I ran it on my machine, I got 1 symbolic factorization for the original program, 2 with the "-destroy_eps" option, and 1 with both "-destroy_eps" and "-empty_ksp". Thanks, Darin ________________________________________ From: Jose E. Roman [jroman at dsic.upv.es] Sent: Wednesday, November 02, 2016 3:29 AM To: Peetz, Darin T Cc: petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Provide Matrix Factorization to EPS for Generalized Eigenvalue Problem > El 1 nov 2016, a las 20:42, Peetz, Darin T escribi?: > > Thank you for providing the example. I have managed to get it working properly; however, after looking at the example, I have one more question. > > First, let me provide a little background on how the code is set up. I have one function that takes care of solving the linear system of equations, and a separate one that takes care of the eigenvalue problem. The KSP object for the linear system is passed between both functions, and kept for the duration of the program to save some of the cost of factorizing the matrix each time. I have been keeping the EPS object local to the function that takes care of the eigenvalue problem since it is only relevant within that function, and I haven't seen a need to reuse the same EPS object in every iteration (I'm assuming the cost of creating the EPS object itself is relatively small). The reason for the extra symbolic factorizations seems to have been that when I destroyed the EPS object before it goes out of scope, it also destroys the underlying KSP object that I provided. > > Basically, I'm wondering if my assumption about the cost of creating the EPS object is correct. Is it okay to recreate the EPS object every time the eigenvalue function is called, or does this create a significant overhead? It seems that if I try to reuse the same EPS object I have to make sure I'm reusing the same A-matrix as well, or else the ST object redoes both the symbolic and numeric factorizations (so the same K matrix is numerically factorized twice in each iteration) each time. Thus I would be able to save a significant amount of memory if I could let the EPS object and A-matrix exist in a local scope. > > As a side note, I worked around the KSP destruction issue by providing an empty (uninitialized) KSP object to the EPS object after calling EPSSolve and extracting the eigenvalues/eigenvectors. This is functional but seems like a bad/crude approach. Is there a more elegant way to "free" the KSP object from the EPS object once it is no longer needed, or should I stick with this approach? > > Thanks a lot for your help, > Darin STSetKSP() increases the reference count of the KSP object, so when EPS is destroyed, the KSP object remains. I don't understand why you need to provide an empty KSP. Regarding your question about recreating EPS, yes the cost can be considered small. Jose -------------- next part -------------- A non-text attachment was scrubbed... Name: ex14.c Type: text/x-csrc Size: 9008 bytes Desc: ex14.c URL: From jroman at dsic.upv.es Wed Nov 2 09:55:57 2016 From: jroman at dsic.upv.es (Jose E. Roman) Date: Wed, 2 Nov 2016 15:55:57 +0100 Subject: [petsc-users] Provide Matrix Factorization to EPS for Generalized Eigenvalue Problem In-Reply-To: References: <78125C48-B577-479A-BC3C-C0E07EEAD0D1@dsic.upv.es> <12F2588E-EB27-4667-8BF3-EE404B2BB520@dsic.upv.es> Message-ID: <7C8D2117-36AE-4346-A65D-E5AE148827AC@dsic.upv.es> > El 2 nov 2016, a las 14:55, Peetz, Darin T escribi?: > > I don't fully understand what the empty KSP is doing either, because it seems to me that if a KSP object was properly destroyed, KSPCreate() should have to be called again before it is used again, right? So it must not be fully destroyed or else the second linear system solve would fail, but something is happening to it such that the symbolic factorization is redone. > > Like I said, the fix I implemented seems to work (even if it doesn't seem necessary), so I don't know that it really needs any more attention. However, I was able to reproduce the behavior in the example you sent me. If you're curious, running the program as normal should behave the same way as the original example. Running with the option "-destroy_eps" destroys and recreates the EPS object, and running with the additional option "-empty_ksp" gives the EPS object an empty KSP before it is destroyed. At least when I ran it on my machine, I got 1 symbolic factorization for the original program, 2 with the "-destroy_eps" option, and 1 with both "-destroy_eps" and "-empty_ksp". > > Thanks, > Darin The -empty_ksp option does not work for me because, first, the compiler gives a warning about an uninitialized variable "empty", and second if I initialize empty=NULL then STSetKSP() fails because the ksp argument is not valid. Regarding the -destroy_eps option, the explanation is the following: when EPSDestroy() is called the following sequence of calls EPSDestroy --> EPSReset --> STReset --> KSPReset results in the assignment ksp->setupstage = KSP_SETUP_NEW That makes a difference because then the next call to KSPSolve will force a setup (including the symbolic factorization). Jose From bsmith at mcs.anl.gov Wed Nov 2 19:17:26 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 2 Nov 2016 19:17:26 -0500 Subject: [petsc-users] examples of using PETSc with spectral methods Message-ID: <6469F769-F1EF-4966-A67F-11ECA18E8AC6@mcs.anl.gov> Is anyone away of cases where PETSc has been used with spectral methods? Thanks Barry From oxberry1 at llnl.gov Wed Nov 2 19:30:53 2016 From: oxberry1 at llnl.gov (Oxberry, Geoffrey Malcolm) Date: Thu, 3 Nov 2016 00:30:53 +0000 Subject: [petsc-users] examples of using PETSc with spectral methods In-Reply-To: <6469F769-F1EF-4966-A67F-11ECA18E8AC6@mcs.anl.gov> References: <6469F769-F1EF-4966-A67F-11ECA18E8AC6@mcs.anl.gov> Message-ID: Google search with "petsc spectral method -element -site:lists.mcs.anl.gov? turns up https://kth.diva-portal.org/smash/get/diva2:904127/FULLTEXT01.pdf http://iopscience.iop.org/article/10.1088/1742-6596/719/1/012022/pdf https://www.black-holes.org/SpEC.html https://damask.mpie.de/Documentation/SpectralSolver I assume you?re already aware of DAMASK, because it was presented at the 2016 PETSc meeting, and of Jed?s work on spectral methods for nonlinear elliptic/Stokes problems. On 11/2/16, 5:17 PM, "petsc-users-bounces at mcs.anl.gov on behalf of Barry Smith" wrote: > > Is anyone away of cases where PETSc has been used with spectral methods? > > Thanks > > Barry > From jed at jedbrown.org Thu Nov 3 11:24:20 2016 From: jed at jedbrown.org (Jed Brown) Date: Thu, 03 Nov 2016 10:24:20 -0600 Subject: [petsc-users] examples of using PETSc with spectral methods In-Reply-To: References: <6469F769-F1EF-4966-A67F-11ECA18E8AC6@mcs.anl.gov> Message-ID: <87vaw4o7kb.fsf@jedbrown.org> I wrote a spectral Chebyshev/FFT Stokes solver. It has been unmaintained for a while, but wouldn't be hard to update. https://github.com/jedbrown/spectral-petsc "Oxberry, Geoffrey Malcolm" writes: > Google search with "petsc spectral method -element > -site:lists.mcs.anl.gov? turns up > > https://kth.diva-portal.org/smash/get/diva2:904127/FULLTEXT01.pdf > > http://iopscience.iop.org/article/10.1088/1742-6596/719/1/012022/pdf > > https://www.black-holes.org/SpEC.html > > https://damask.mpie.de/Documentation/SpectralSolver > > > I assume you?re already aware of DAMASK, because it was presented at the > 2016 PETSc meeting, and of Jed?s work on spectral methods for nonlinear > elliptic/Stokes problems. > > On 11/2/16, 5:17 PM, "petsc-users-bounces at mcs.anl.gov on behalf of Barry > Smith" > wrote: > >> >> Is anyone away of cases where PETSc has been used with spectral methods? >> >> Thanks >> >> Barry >> -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 800 bytes Desc: not available URL: From ztdepyahoo at 163.com Thu Nov 3 17:46:19 2016 From: ztdepyahoo at 163.com (ztdepyahoo at 163.com) Date: Fri, 4 Nov 2016 06:46:19 +0800 Subject: [petsc-users] examples of using PETSc with spectral methods In-Reply-To: <6469F769-F1EF-4966-A67F-11ECA18E8AC6@mcs.anl.gov> References: <6469F769-F1EF-4966-A67F-11ECA18E8AC6@mcs.anl.gov> Message-ID: <581BBE3B.60206@163.com> I write a spectral collocation method for the solution of NS equations. with a pencil decomposition. - ???WPS?? - ? 2016/11/3 08:17, Barry Smith ??: Is anyone away of cases where PETSc has been used with spectral methods? Thanks Barry -------------- next part -------------- An HTML attachment was scrubbed... URL: From mailinglists at xgm.de Fri Nov 4 09:14:56 2016 From: mailinglists at xgm.de (Florian Lindner) Date: Fri, 4 Nov 2016 15:14:56 +0100 Subject: [petsc-users] How to view draw a matrix? Message-ID: Hello, I want to print the sparsity structure of a matrix of type MPISBAIJ and try to use this code: PetscErrorCode ierr = 0; PetscViewer viewer; PetscDraw draw; ierr = PetscViewerCreate(communicator, &viewer); CHKERRV(ierr); ierr = PetscViewerSetType(viewer, PETSCVIEWERDRAW); CHKERRV(ierr); ierr = MatView(matrix, viewer); CHKERRV(ierr); ierr = PetscViewerDrawGetDraw(viewer, 0, &draw); CHKERRV(ierr); ierr = PetscDrawSetPause(draw, -1); CHKERRV(ierr); // Wait for user ierr = PetscDrawDestroy(&draw); CHKERRV(ierr); ierr = PetscViewerDestroy(&viewer); CHKERRV(ierr); communicator is of type MPI_Comm and is PETSC_COMM_WORLD. It opens an X window and shows the matrix just fine. The window closes after a right click and then my application crashes: -------------------------------------------------------------------------- [1]PETSC ERROR: PetscDrawFlush() line 27 in /data/scratch/lindnefn/software/petsc/src/sys/classes/draw/interface/dflush.c Wrong type of object: Parameter # 1 -------------------------------------------------------------------------- I tried to swap the DrawDestroy and ViewerDestroy calls (though, imho the order is correct), but changes nothing. Thanks, Florian From knepley at gmail.com Fri Nov 4 09:21:26 2016 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 4 Nov 2016 09:21:26 -0500 Subject: [petsc-users] How to view draw a matrix? In-Reply-To: References: Message-ID: On Fri, Nov 4, 2016 at 9:14 AM, Florian Lindner wrote: > Hello, > > I want to print the sparsity structure of a matrix of type MPISBAIJ and > try to use this code: > > PetscErrorCode ierr = 0; > PetscViewer viewer; > PetscDraw draw; > ierr = PetscViewerCreate(communicator, &viewer); CHKERRV(ierr); > ierr = PetscViewerSetType(viewer, PETSCVIEWERDRAW); CHKERRV(ierr); > ierr = MatView(matrix, viewer); CHKERRV(ierr); > ierr = PetscViewerDrawGetDraw(viewer, 0, &draw); CHKERRV(ierr); > ierr = PetscDrawSetPause(draw, -1); CHKERRV(ierr); // Wait for user > ierr = PetscDrawDestroy(&draw); CHKERRV(ierr); > ierr = PetscViewerDestroy(&viewer); CHKERRV(ierr); > > communicator is of type MPI_Comm and is PETSC_COMM_WORLD. > > It opens an X window and shows the matrix just fine. The window closes > after a right click and then my application crashes: > > -------------------------------------------------------------------------- > [1]PETSC ERROR: PetscDrawFlush() line 27 in /data/scratch/lindnefn/ > software/petsc/src/sys/classes/draw/interface/dflush.c > Wrong type of object: Parameter # 1 > -------------------------------------------------------------------------- > > I tried to swap the DrawDestroy and ViewerDestroy calls (though, imho the > order is correct), but changes nothing. > 1) Do not Destroy the Draw you get. That is just a borrowed reference. 2) You can do all that by calling MatViewFromOptions(matrix, NULL, "-mymat_view"); and then passing -mymat_view draw -draw_pause -1 Matt > Thanks, > Florian > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From mailinglists at xgm.de Fri Nov 4 09:33:08 2016 From: mailinglists at xgm.de (Florian Lindner) Date: Fri, 4 Nov 2016 15:33:08 +0100 Subject: [petsc-users] How to view draw a matrix? In-Reply-To: References: Message-ID: <4297b30f-4086-adcd-eba8-5355bb4fa2ea@xgm.de> Hey, Am 04.11.2016 um 15:21 schrieb Matthew Knepley: > On Fri, Nov 4, 2016 at 9:14 AM, Florian Lindner > wrote: > > Hello, > > I want to print the sparsity structure of a matrix of type MPISBAIJ and try to use this code: > > PetscErrorCode ierr = 0; > PetscViewer viewer; > PetscDraw draw; > ierr = PetscViewerCreate(communicator, &viewer); CHKERRV(ierr); > ierr = PetscViewerSetType(viewer, PETSCVIEWERDRAW); CHKERRV(ierr); > ierr = MatView(matrix, viewer); CHKERRV(ierr); > ierr = PetscViewerDrawGetDraw(viewer, 0, &draw); CHKERRV(ierr); > ierr = PetscDrawSetPause(draw, -1); CHKERRV(ierr); // Wait for user > ierr = PetscDrawDestroy(&draw); CHKERRV(ierr); > ierr = PetscViewerDestroy(&viewer); CHKERRV(ierr); > > communicator is of type MPI_Comm and is PETSC_COMM_WORLD. > > It opens an X window and shows the matrix just fine. The window closes after a right click and then my application > crashes: > > -------------------------------------------------------------------------- > [1]PETSC ERROR: PetscDrawFlush() line 27 in > /data/scratch/lindnefn/software/petsc/src/sys/classes/draw/interface/dflush.c > Wrong type of object: Parameter # 1 > -------------------------------------------------------------------------- > > I tried to swap the DrawDestroy and ViewerDestroy calls (though, imho the order is correct), but changes nothing. > > > 1) Do not Destroy the Draw you get. That is just a borrowed reference. Perfekt, that works. > 2) You can do all that by calling > > MatViewFromOptions(matrix, NULL, "-mymat_view"); > > and then passing > > -mymat_view draw -draw_pause -1 Yeah, the arguments or .petscrc are really great for experimenting! Best, Florian > -- > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any > results to which their experiments lead. > -- Norbert Wiener From mailinglists at xgm.de Fri Nov 4 10:44:01 2016 From: mailinglists at xgm.de (Florian Lindner) Date: Fri, 4 Nov 2016 16:44:01 +0100 Subject: [petsc-users] Seeking help for analyzing non-convergence (KSP) Message-ID: Hello, I have a matrix C that is the result of an RBF interpolation. It is constructured like that: c_ij = phi( |x_i - x_j| ) x are supporting points. phi is the radial basis functions, here it is a Gaussian: phi(r) = exp( -(1.5*r)^2 ). The system is augmented by a global polynomial, which results in the first 3 rows being dense. The matrix is symmetric and of size 2309. It is also sparse since the basis functions are decaying very rapidly. A picture of the sparsity pattern I have uploaded at [1] I am having big trouble solving the system. Using default settings on 10 procs I'm not achieving convergence after 40k iterations: 40000 KSP preconditioned resid norm 2.525546749843e+01 true resid norm 5.470906445602e+01 ||r(i)||/||b|| 3.122197420093e-02 I have uploaded a small python script using petsc4py that simply loads the matrix and the rhs and tries to solve it. It is bundled with the matrix and rhs and available at [2] (650 KB). Some paths in the Python source need to be adapted. The condition number using -pc_type svd -pc_svd_monitor did not work, due to incompatible matrix formats. The condition number estimate using -pc_type none -ksp_type gmres -ksp_monitor_singular_value -ksp_gmres_restart 1000 has been running for over half an hour now, its current line is: 5655 KSP preconditioned resid norm 9.481821216790e-02 true resid norm 9.481821212512e-02 ||r(i)||/||b|| 5.411190635748e-05 5655 KSP Residual norm 9.481821216790e-02 % max 2.853532248325e+02 min 1.073886912921e-06 max/min 2.657199947212e+08 The Eigenvalues, computed with -ksp_compute_eigenvalues -ksp_gmres_restart 1000 -pc_type none did not converge after 40k iterations, bit they eigenvalues were printed. They are all real, none is zero, but some are pretty close. I've pasted them at the end of the mail. I tried a bunch of different PCs, but I'm somehow helpless on how to analyse that problem more systematically. I know that RBF interpolation tends to produce badly conditioned matrices, but this seems to be (almost) singular. I have scrutinized my algorithms and in most cases it works just fine, converges and the output results are sane. I am grateful for any help! Best, Florian [1] http://xgm.de/upload/sparsity.png [2] http://xgm.de/upload/RBF.tar.bz2 Eigenvalues: Iteratively computed eigenvalues -276.515 + 0.i -276.348 + 0.i -43.5577 + 0.i 3.27753e-09 + 0.i 5.09352e-06 + 0.i 1.56431e-05 + 0.i 2.79046e-05 + 0.i 0.000145571 + 0.i 0.000184333 + 0.i 0.000283665 + 0.i 0.000395128 + 0.i 0.000488579 + 0.i 0.000568982 + 0.i 0.000704054 + 0.i 0.000864538 + 0.i 0.00101309 + 0.i 0.00119913 + 0.i 0.00142954 + 0.i 0.00156907 + 0.i 0.00178931 + 0.i 0.00200295 + 0.i 0.00223425 + 0.i 0.00246876 + 0.i 0.00276749 + 0.i 0.00303141 + 0.i 0.00326647 + 0.i 0.00346721 + 0.i 0.00437335 + 0.i 0.0047525 + 0.i 0.0049999 + 0.i 0.0051701 + 0.i 0.00556462 + 0.i 0.00605938 + 0.i 0.00628264 + 0.i 0.00697463 + 0.i 0.00756472 + 0.i 0.00783031 + 0.i 0.00822392 + 0.i 0.00868428 + 0.i 0.00928107 + 0.i 0.00954981 + 0.i 0.0104767 + 0.i 0.0108791 + 0.i 0.0111159 + 0.i 0.0119535 + 0.i 0.0125402 + 0.i 0.0131083 + 0.i 0.0135975 + 0.i 0.0142472 + 0.i 0.0148179 + 0.i 0.0156007 + 0.i 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4.96201 + 0.i 4.96209 + 0.i 4.981 + 0.i 4.98151 + 0.i 5.06651 + 0.i 5.19733 + 0.i 5.21834 + 0.i 5.2184 + 0.i 5.2184 + 0.i 5.2184 + 0.i 5.21846 + 0.i 5.49277 + 0.i 5.50119 + 0.i 5.50517 + 0.i 5.5204 + 0.i 5.52046 + 0.i 5.52046 + 0.i 5.52081 + 0.i 5.52102 + 0.i 5.5294 + 0.i 5.52954 + 0.i 5.5956 + 0.i 5.59687 + 0.i 5.59694 + 0.i 5.59766 + 0.i 5.6491 + 0.i 5.64982 + 0.i 5.64984 + 0.i 5.64987 + 0.i 5.8325 + 0.i 5.93872 + 0.i 5.95213 + 0.i 5.95213 + 0.i 5.95367 + 0.i 5.95377 + 0.i 5.96576 + 0.i 6.13806 + 0.i 6.13941 + 0.i 6.36023 + 0.i 6.37305 + 0.i 6.37312 + 0.i 6.37312 + 0.i 6.37498 + 0.i 6.37574 + 0.i 6.8939 + 0.i 6.92001 + 0.i 6.92009 + 0.i 6.92009 + 0.i 6.92009 + 0.i 6.92017 + 0.i 7.10562 + 0.i 7.12889 + 0.i 7.12897 + 0.i 7.12897 + 0.i 7.13024 + 0.i 7.13089 + 0.i 7.40688 + 0.i 7.46155 + 0.i 7.47877 + 0.i 7.49077 + 0.i 7.49077 + 0.i 7.49145 + 0.i 7.49157 + 0.i 7.49954 + 0.i 7.56572 + 0.i 7.56602 + 0.i 7.76145 + 0.i 7.76855 + 0.i 7.76864 + 0.i 7.76864 + 0.i 7.8675 + 0.i 7.86924 + 0.i 7.93069 + 0.i 7.93406 + 0.i 7.93419 + 0.i 8.58745 + 0.i 8.58793 + 0.i 8.65657 + 0.i 8.65693 + 0.i 8.65703 + 0.i 8.65703 + 0.i 8.76218 + 0.i 8.76323 + 0.i 8.76344 + 0.i 8.76345 + 0.i 8.76364 + 0.i 8.76379 + 0.i 8.84516 + 0.i 8.84531 + 0.i 8.84538 + 0.i 8.84542 + 0.i 8.84542 + 0.i 8.84542 + 0.i 9.96128 + 0.i 10.0422 + 0.i 10.3582 + 0.i 11.1981 + 0.i 11.5961 + 0.i 11.5961 + 0.i 11.5961 + 0.i 11.5962 + 0.i 11.5962 + 0.i 11.5962 + 0.i 11.5962 + 0.i 11.5963 + 0.i 16.048 + 0.i 17.1999 + 0.i 17.2057 + 0.i 18.1546 + 0.i 18.1548 + 0.i 18.1548 + 0.i 18.155 + 0.i 18.155 + 0.i 18.155 + 0.i 53.4484 + 0.i 285.167 + 0.i 285.353 + 0.i From abdullahasivas at gmail.com Fri Nov 4 11:15:49 2016 From: abdullahasivas at gmail.com (abdullahasivas at gmail.com) Date: Fri, 04 Nov 2016 12:15:49 -0400 Subject: [petsc-users] Seeking help for analyzing non-convergence (KSP) Message-ID: Hello Florian, I usually apply following steps before going to preconditioners; - Construct a smaller matrix and examine the nonzeros, try to use permutations to get a smaller bandwidth (minimum degree or symrcm). - Use symmetric diagonal scaling, which usually helps a lot but mostly not enough by itself. - I have found out that (as a part of my master thesis), ParaSails is a good general purpose preconditioner and you can have symmetric ParaSails preconditioners easily. I hope this helps.? Regards,Abdullah Ali Sivas -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Nov 4 11:57:59 2016 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 4 Nov 2016 11:57:59 -0500 Subject: [petsc-users] Seeking help for analyzing non-convergence (KSP) In-Reply-To: References: Message-ID: On Fri, Nov 4, 2016 at 10:44 AM, Florian Lindner wrote: > Hello, > > I have a matrix C that is the result of an RBF interpolation. > > It is constructured like that: > > c_ij = phi( |x_i - x_j| ) > > x are supporting points. phi is the radial basis functions, here it is a > Gaussian: phi(r) = exp( -(1.5*r)^2 ). > > The system is augmented by a global polynomial, which results in the first > 3 rows being dense. > > The matrix is symmetric and of size 2309. It is also sparse since the > basis functions are decaying very rapidly. A > picture of the sparsity pattern I have uploaded at [1] > > I am having big trouble solving the system. > > Using default settings on 10 procs I'm not achieving convergence after 40k > iterations: > > 40000 KSP preconditioned resid norm 2.525546749843e+01 true resid norm > 5.470906445602e+01 ||r(i)||/||b|| 3.122197420093e-02 > > I have uploaded a small python script using petsc4py that simply loads the > matrix and the rhs and tries to solve it. It > is bundled with the matrix and rhs and available at [2] (650 KB). Some > paths in the Python source need to be adapted. > > The condition number using -pc_type svd -pc_svd_monitor did not work, due > to incompatible matrix formats. > > The condition number estimate using -pc_type none -ksp_type gmres > -ksp_monitor_singular_value -ksp_gmres_restart 1000 > has been running for over half an hour now, its current line is: > > 5655 KSP preconditioned resid norm 9.481821216790e-02 true resid norm > 9.481821212512e-02 ||r(i)||/||b|| 5.411190635748e-05 > 5655 KSP Residual norm 9.481821216790e-02 % max 2.853532248325e+02 min > 1.073886912921e-06 max/min 2.657199947212e+08 > > The Eigenvalues, computed with -ksp_compute_eigenvalues -ksp_gmres_restart > 1000 -pc_type none did not converge after 40k > iterations, bit they eigenvalues were printed. They are all real, none is > zero, but some are pretty close. I've pasted > them at the end of the mail. > > I tried a bunch of different PCs, but I'm somehow helpless on how to > analyse that problem more systematically. > Small block RASM is a good preconditioner. Here is a lengthy explanation https://arxiv.org/abs/0909.5413 Thanks, Matt > I know that RBF interpolation tends to produce badly conditioned matrices, > but this seems to be (almost) singular. I > have scrutinized my algorithms and in most cases it works just fine, > converges and the output results are sane. > > I am grateful for any help! > > Best, > Florian > > > [1] http://xgm.de/upload/sparsity.png > [2] http://xgm.de/upload/RBF.tar.bz2 > > Eigenvalues: > > Iteratively computed eigenvalues > -276.515 + 0.i > -276.348 + 0.i > -43.5577 + 0.i > 3.27753e-09 + 0.i > 5.09352e-06 + 0.i > 1.56431e-05 + 0.i > 2.79046e-05 + 0.i > 0.000145571 + 0.i > 0.000184333 + 0.i > 0.000283665 + 0.i > 0.000395128 + 0.i > 0.000488579 + 0.i > 0.000568982 + 0.i > 0.000704054 + 0.i > 0.000864538 + 0.i > 0.00101309 + 0.i > 0.00119913 + 0.i > 0.00142954 + 0.i > 0.00156907 + 0.i > 0.00178931 + 0.i > 0.00200295 + 0.i > 0.00223425 + 0.i > 0.00246876 + 0.i > 0.00276749 + 0.i > 0.00303141 + 0.i > 0.00326647 + 0.i > 0.00346721 + 0.i > 0.00437335 + 0.i > 0.0047525 + 0.i > 0.0049999 + 0.i > 0.0051701 + 0.i > 0.00556462 + 0.i > 0.00605938 + 0.i > 0.00628264 + 0.i > 0.00697463 + 0.i > 0.00756472 + 0.i > 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3.65001 + 0.i > 3.70438 + 0.i > 3.7044 + 0.i > 3.75027 + 0.i > 3.75027 + 0.i > 3.78498 + 0.i > 3.78501 + 0.i > 3.79402 + 0.i > 3.80135 + 0.i > 3.80244 + 0.i > 3.80273 + 0.i > 3.8261 + 0.i > 3.82995 + 0.i > 3.86128 + 0.i > 3.86376 + 0.i > 3.86632 + 0.i > 3.86861 + 0.i > 3.87662 + 0.i > 3.88743 + 0.i > 3.88747 + 0.i > 3.88747 + 0.i > 3.90168 + 0.i > 3.90383 + 0.i > 3.94272 + 0.i > 4.07034 + 0.i > 4.07073 + 0.i > 4.07106 + 0.i > 4.0712 + 0.i > 4.12802 + 0.i > 4.179 + 0.i > 4.179 + 0.i > 4.21785 + 0.i > 4.21785 + 0.i > 4.23041 + 0.i > 4.26551 + 0.i > 4.26984 + 0.i > 4.26984 + 0.i > 4.28215 + 0.i > 4.28222 + 0.i > 4.28253 + 0.i > 4.28253 + 0.i > 4.28439 + 0.i > 4.30964 + 0.i > 4.41513 + 0.i > 4.42009 + 0.i > 4.4201 + 0.i > 4.4201 + 0.i > 4.55339 + 0.i > 4.55351 + 0.i > 4.5543 + 0.i > 4.5544 + 0.i > 4.6759 + 0.i > 4.69125 + 0.i > 4.6913 + 0.i > 4.6913 + 0.i > 4.69141 + 0.i > 4.69152 + 0.i > 4.779 + 0.i > 4.78551 + 0.i > 4.78649 + 0.i > 4.78681 + 0.i > 4.96201 + 0.i > 4.96209 + 0.i > 4.981 + 0.i > 4.98151 + 0.i > 5.06651 + 0.i > 5.19733 + 0.i > 5.21834 + 0.i > 5.2184 + 0.i > 5.2184 + 0.i > 5.2184 + 0.i > 5.21846 + 0.i > 5.49277 + 0.i > 5.50119 + 0.i > 5.50517 + 0.i > 5.5204 + 0.i > 5.52046 + 0.i > 5.52046 + 0.i > 5.52081 + 0.i > 5.52102 + 0.i > 5.5294 + 0.i > 5.52954 + 0.i > 5.5956 + 0.i > 5.59687 + 0.i > 5.59694 + 0.i > 5.59766 + 0.i > 5.6491 + 0.i > 5.64982 + 0.i > 5.64984 + 0.i > 5.64987 + 0.i > 5.8325 + 0.i > 5.93872 + 0.i > 5.95213 + 0.i > 5.95213 + 0.i > 5.95367 + 0.i > 5.95377 + 0.i > 5.96576 + 0.i > 6.13806 + 0.i > 6.13941 + 0.i > 6.36023 + 0.i > 6.37305 + 0.i > 6.37312 + 0.i > 6.37312 + 0.i > 6.37498 + 0.i > 6.37574 + 0.i > 6.8939 + 0.i > 6.92001 + 0.i > 6.92009 + 0.i > 6.92009 + 0.i > 6.92009 + 0.i > 6.92017 + 0.i > 7.10562 + 0.i > 7.12889 + 0.i > 7.12897 + 0.i > 7.12897 + 0.i > 7.13024 + 0.i > 7.13089 + 0.i > 7.40688 + 0.i > 7.46155 + 0.i > 7.47877 + 0.i > 7.49077 + 0.i > 7.49077 + 0.i > 7.49145 + 0.i > 7.49157 + 0.i > 7.49954 + 0.i > 7.56572 + 0.i > 7.56602 + 0.i > 7.76145 + 0.i > 7.76855 + 0.i > 7.76864 + 0.i > 7.76864 + 0.i > 7.8675 + 0.i > 7.86924 + 0.i > 7.93069 + 0.i > 7.93406 + 0.i > 7.93419 + 0.i > 8.58745 + 0.i > 8.58793 + 0.i > 8.65657 + 0.i > 8.65693 + 0.i > 8.65703 + 0.i > 8.65703 + 0.i > 8.76218 + 0.i > 8.76323 + 0.i > 8.76344 + 0.i > 8.76345 + 0.i > 8.76364 + 0.i > 8.76379 + 0.i > 8.84516 + 0.i > 8.84531 + 0.i > 8.84538 + 0.i > 8.84542 + 0.i > 8.84542 + 0.i > 8.84542 + 0.i > 9.96128 + 0.i > 10.0422 + 0.i > 10.3582 + 0.i > 11.1981 + 0.i > 11.5961 + 0.i > 11.5961 + 0.i > 11.5961 + 0.i > 11.5962 + 0.i > 11.5962 + 0.i > 11.5962 + 0.i > 11.5962 + 0.i > 11.5963 + 0.i > 16.048 + 0.i > 17.1999 + 0.i > 17.2057 + 0.i > 18.1546 + 0.i > 18.1548 + 0.i > 18.1548 + 0.i > 18.155 + 0.i > 18.155 + 0.i > 18.155 + 0.i > 53.4484 + 0.i > 285.167 + 0.i > 285.353 + 0.i > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener 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URL: From bsmith at mcs.anl.gov Fri Nov 4 12:42:00 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 4 Nov 2016 12:42:00 -0500 Subject: [petsc-users] Seeking help for analyzing non-convergence (KSP) In-Reply-To: References: Message-ID: <153764A7-94BC-433F-9610-E374982175FA@mcs.anl.gov> Try running on one process with the SuperLU direct solver (note superlu NOT superlu_dist). You need to ./configure PETSc with --download-superlu then run your code with -pc_type lu -pc_factor_mat_solver_package superlu Barry > On Nov 4, 2016, at 10:44 AM, Florian Lindner wrote: > > Hello, > > I have a matrix C that is the result of an RBF interpolation. > > It is constructured like that: > > c_ij = phi( |x_i - x_j| ) > > x are supporting points. phi is the radial basis functions, here it is a Gaussian: phi(r) = exp( -(1.5*r)^2 ). > > The system is augmented by a global polynomial, which results in the first 3 rows being dense. > > The matrix is symmetric and of size 2309. It is also sparse since the basis functions are decaying very rapidly. A > picture of the sparsity pattern I have uploaded at [1] > > I am having big trouble solving the system. > > Using default settings on 10 procs I'm not achieving convergence after 40k iterations: > > 40000 KSP preconditioned resid norm 2.525546749843e+01 true resid norm 5.470906445602e+01 ||r(i)||/||b|| 3.122197420093e-02 > > I have uploaded a small python script using petsc4py that simply loads the matrix and the rhs and tries to solve it. It > is bundled with the matrix and rhs and available at [2] (650 KB). Some paths in the Python source need to be adapted. > > The condition number using -pc_type svd -pc_svd_monitor did not work, due to incompatible matrix formats. > > The condition number estimate using -pc_type none -ksp_type gmres -ksp_monitor_singular_value -ksp_gmres_restart 1000 > has been running for over half an hour now, its current line is: > > 5655 KSP preconditioned resid norm 9.481821216790e-02 true resid norm 9.481821212512e-02 ||r(i)||/||b|| 5.411190635748e-05 > 5655 KSP Residual norm 9.481821216790e-02 % max 2.853532248325e+02 min 1.073886912921e-06 max/min 2.657199947212e+08 > > The Eigenvalues, computed with -ksp_compute_eigenvalues -ksp_gmres_restart 1000 -pc_type none did not converge after 40k > iterations, bit they eigenvalues were printed. They are all real, none is zero, but some are pretty close. I've pasted > them at the end of the mail. > > I tried a bunch of different PCs, but I'm somehow helpless on how to analyse that problem more systematically. > > I know that RBF interpolation tends to produce badly conditioned matrices, but this seems to be (almost) singular. I > have scrutinized my algorithms and in most cases it works just fine, converges and the output results are sane. > > I am grateful for any help! > > Best, > Florian > > > [1] http://xgm.de/upload/sparsity.png > [2] http://xgm.de/upload/RBF.tar.bz2 > > Eigenvalues: > > Iteratively computed eigenvalues > -276.515 + 0.i > -276.348 + 0.i > -43.5577 + 0.i > 3.27753e-09 + 0.i > 5.09352e-06 + 0.i > 1.56431e-05 + 0.i > 2.79046e-05 + 0.i > 0.000145571 + 0.i > 0.000184333 + 0.i > 0.000283665 + 0.i > 0.000395128 + 0.i > 0.000488579 + 0.i > 0.000568982 + 0.i > 0.000704054 + 0.i > 0.000864538 + 0.i > 0.00101309 + 0.i > 0.00119913 + 0.i > 0.00142954 + 0.i > 0.00156907 + 0.i > 0.00178931 + 0.i > 0.00200295 + 0.i > 0.00223425 + 0.i > 0.00246876 + 0.i > 0.00276749 + 0.i > 0.00303141 + 0.i > 0.00326647 + 0.i > 0.00346721 + 0.i > 0.00437335 + 0.i > 0.0047525 + 0.i > 0.0049999 + 0.i > 0.0051701 + 0.i > 0.00556462 + 0.i > 0.00605938 + 0.i > 0.00628264 + 0.i > 0.00697463 + 0.i > 0.00756472 + 0.i > 0.00783031 + 0.i > 0.00822392 + 0.i > 0.00868428 + 0.i > 0.00928107 + 0.i > 0.00954981 + 0.i > 0.0104767 + 0.i > 0.0108791 + 0.i > 0.0111159 + 0.i > 0.0119535 + 0.i > 0.0125402 + 0.i > 0.0131083 + 0.i > 0.0135975 + 0.i > 0.0142472 + 0.i > 0.0148179 + 0.i > 0.0156007 + 0.i > 0.0160567 + 0.i > 0.0169899 + 0.i > 0.0174895 + 0.i > 0.0182683 + 0.i > 0.0189543 + 0.i > 0.0196781 + 0.i > 0.0206413 + 0.i > 0.0212257 + 0.i > 0.0220118 + 0.i > 0.0229829 + 0.i > 0.023606 + 0.i > 0.0244077 + 0.i > 0.0253428 + 0.i > 0.0263089 + 0.i > 0.0269905 + 0.i > 0.0278572 + 0.i > 0.028664 + 0.i > 0.0293435 + 0.i > 0.0306571 + 0.i > 0.0315797 + 0.i > 0.0320843 + 0.i > 0.0334732 + 0.i > 0.0344048 + 0.i > 0.0349148 + 0.i > 0.0361261 + 0.i > 0.037176 + 0.i > 0.0382401 + 0.i > 0.0390156 + 0.i > 0.0404156 + 0.i > 0.0413084 + 0.i > 0.0421763 + 0.i > 0.0434521 + 0.i > 0.0452247 + 0.i > 0.0460417 + 0.i > 0.0467954 + 0.i > 0.0479258 + 0.i > 0.0489899 + 0.i > 0.0506182 + 0.i > 0.0512171 + 0.i > 0.0529938 + 0.i > 0.0537732 + 0.i > 0.0549977 + 0.i > 0.056272 + 0.i > 0.0574546 + 0.i > 0.0585867 + 0.i > 0.0595438 + 0.i > 0.0614507 + 0.i > 0.0625339 + 0.i > 0.0634786 + 0.i > 0.0651556 + 0.i > 0.066393 + 0.i > 0.067585 + 0.i > 0.0701521 + 0.i > 0.0709748 + 0.i > 0.0725257 + 0.i > 0.073676 + 0.i > 0.0739372 + 0.i > 0.0758159 + 0.i > 0.078728 + 0.i > 0.0803127 + 0.i > 0.0813565 + 0.i > 0.0819371 + 0.i > 0.0824692 + 0.i > 0.0847166 + 0.i > 0.0878818 + 0.i > 0.0901822 + 0.i > 0.0906192 + 0.i > 0.0912192 + 0.i > 0.0921386 + 0.i > 0.0964252 + 0.i > 0.0978271 + 0.i > 0.0991256 + 0.i > 0.100197 + 0.i > 0.101757 + 0.i > 0.103163 + 0.i > 0.104427 + 0.i > 0.105316 + 0.i > 0.108255 + 0.i > 0.110149 + 0.i > 0.111963 + 0.i > 0.113533 + 0.i > 0.114857 + 0.i > 0.11807 + 0.i > 0.119241 + 0.i > 0.121196 + 0.i > 0.124063 + 0.i > 0.124824 + 0.i > 0.125867 + 0.i > 0.129153 + 0.i > 0.129692 + 0.i > 0.130804 + 0.i > 0.13186 + 0.i > 0.136671 + 0.i > 0.137159 + 0.i > 0.139948 + 0.i > 0.140338 + 0.i > 0.143836 + 0.i > 0.145398 + 0.i > 0.146868 + 0.i > 0.14813 + 0.i > 0.149113 + 0.i > 0.152292 + 0.i > 0.154569 + 0.i > 0.1592 + 0.i > 0.159868 + 0.i > 0.16113 + 0.i > 0.163854 + 0.i > 0.16612 + 0.i > 0.167395 + 0.i > 0.169089 + 0.i > 0.171137 + 0.i > 0.173693 + 0.i > 0.176847 + 0.i > 0.177794 + 0.i > 0.178951 + 0.i > 0.179342 + 0.i > 0.185936 + 0.i > 0.18772 + 0.i > 0.189272 + 0.i > 0.191293 + 0.i > 0.193085 + 0.i > 0.195212 + 0.i > 0.197571 + 0.i > 0.199457 + 0.i > 0.201105 + 0.i > 0.204097 + 0.i > 0.207915 + 0.i > 0.208748 + 0.i > 0.212964 + 0.i > 0.214298 + 0.i > 0.217664 + 0.i > 0.218679 + 0.i > 0.220846 + 0.i > 0.222277 + 0.i > 0.226707 + 0.i > 0.228239 + 0.i > 0.229806 + 0.i > 0.231871 + 0.i > 0.235329 + 0.i > 0.237857 + 0.i > 0.241059 + 0.i > 0.242546 + 0.i > 0.244337 + 0.i > 0.246314 + 0.i > 0.248005 + 0.i > 0.250223 + 0.i > 0.252628 + 0.i > 0.255812 + 0.i > 0.256945 + 0.i > 0.258131 + 0.i > 0.266436 + 0.i > 0.269103 + 0.i > 0.270135 + 0.i > 0.271536 + 0.i > 0.273719 + 0.i > 0.279941 + 0.i > 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0.650915 + 0.i > 0.652575 + 0.i > 0.654514 + 0.i > 0.656047 + 0.i > 0.658775 + 0.i > 0.66205 + 0.i > 0.664198 + 0.i > 0.666337 + 0.i > 0.670879 + 0.i > 0.675989 + 0.i > 0.677792 + 0.i > 0.678938 + 0.i > 0.6845 + 0.i > 0.684931 + 0.i > 0.687205 + 0.i > 0.692041 + 0.i > 0.692177 + 0.i > 0.693601 + 0.i > 0.711189 + 0.i > 0.716514 + 0.i > 0.71922 + 0.i > 0.72388 + 0.i > 0.72405 + 0.i > 0.730072 + 0.i > 0.730319 + 0.i > 0.732633 + 0.i > 0.73299 + 0.i > 0.737779 + 0.i > 0.74204 + 0.i > 0.744661 + 0.i > 0.746251 + 0.i > 0.746947 + 0.i > 0.751408 + 0.i > 0.751786 + 0.i > 0.753859 + 0.i > 0.761784 + 0.i > 0.762905 + 0.i > 0.765961 + 0.i > 0.767479 + 0.i > 0.769471 + 0.i > 0.769529 + 0.i > 0.774108 + 0.i > 0.794173 + 0.i > 0.799031 + 0.i > 0.799111 + 0.i > 0.811928 + 0.i > 0.812351 + 0.i > 0.813483 + 0.i > 0.815524 + 0.i > 0.815749 + 0.i > 0.826079 + 0.i > 0.826832 + 0.i > 0.831323 + 0.i > 0.832443 + 0.i > 0.8415 + 0.i > 0.842963 + 0.i > 0.843567 + 0.i > 0.84377 + 0.i > 0.847571 + 0.i > 0.8493 + 0.i > 0.849347 + 0.i > 0.85882 + 0.i > 0.859196 + 0.i > 0.862321 + 0.i > 0.863661 + 0.i > 0.867476 + 0.i > 0.8677 + 0.i > 0.884245 + 0.i > 0.884266 + 0.i > 0.893719 + 0.i > 0.893886 + 0.i > 0.907204 + 0.i > 0.907405 + 0.i > 0.908615 + 0.i > 0.909567 + 0.i > 0.909714 + 0.i > 0.916938 + 0.i > 0.920716 + 0.i > 0.926377 + 0.i > 0.926776 + 0.i > 0.928557 + 0.i > 0.928572 + 0.i > 0.939078 + 0.i > 0.939392 + 0.i > 0.940033 + 0.i > 0.941661 + 0.i > 0.942081 + 0.i > 0.942419 + 0.i > 0.942522 + 0.i > 0.951621 + 0.i > 0.952499 + 0.i > 0.959928 + 0.i > 0.96003 + 0.i > 0.960158 + 0.i > 0.96049 + 0.i > 0.974053 + 0.i > 0.974116 + 0.i > 0.988145 + 0.i > 0.988274 + 0.i > 0.988988 + 0.i > 0.989061 + 0.i > 0.98914 + 0.i > 0.991796 + 0.i > 0.991902 + 0.i > 0.994804 + 0.i > 0.994863 + 0.i > 1.0045 + 0.i > 1.00453 + 0.i > 1.00987 + 0.i > 1.02901 + 0.i > 1.03109 + 0.i > 1.0311 + 0.i > 1.03117 + 0.i > 1.03133 + 0.i > 1.03275 + 0.i > 1.0329 + 0.i > 1.03517 + 0.i > 1.03527 + 0.i > 1.03931 + 0.i > 1.03945 + 0.i > 1.07673 + 0.i > 1.07703 + 0.i > 1.07789 + 0.i > 1.07789 + 0.i > 1.08547 + 0.i > 1.08549 + 0.i > 1.09246 + 0.i > 1.09269 + 0.i > 1.09886 + 0.i > 1.09886 + 0.i > 1.10179 + 0.i > 1.10188 + 0.i > 1.10626 + 0.i > 1.10653 + 0.i > 1.10814 + 0.i > 1.10819 + 0.i > 1.10901 + 0.i > 1.10911 + 0.i > 1.10923 + 0.i > 1.10954 + 0.i > 1.11153 + 0.i > 1.11368 + 0.i > 1.11412 + 0.i > 1.11424 + 0.i > 1.11729 + 0.i > 1.1174 + 0.i > 1.14549 + 0.i > 1.14715 + 0.i > 1.14717 + 0.i > 1.14717 + 0.i > 1.14746 + 0.i > 1.14758 + 0.i > 1.16574 + 0.i > 1.16597 + 0.i > 1.17815 + 0.i > 1.17845 + 0.i > 1.18206 + 0.i > 1.18208 + 0.i > 1.20113 + 0.i > 1.20116 + 0.i > 1.20318 + 0.i > 1.2033 + 0.i > 1.20947 + 0.i > 1.20955 + 0.i > 1.21223 + 0.i > 1.21596 + 0.i > 1.21596 + 0.i > 1.22727 + 0.i > 1.2273 + 0.i > 1.23049 + 0.i > 1.23086 + 0.i > 1.23474 + 0.i > 1.23636 + 0.i > 1.2396 + 0.i > 1.23962 + 0.i > 1.25889 + 0.i > 1.25919 + 0.i > 1.25948 + 0.i > 1.25961 + 0.i > 1.26135 + 0.i > 1.26146 + 0.i > 1.27463 + 0.i > 1.27486 + 0.i > 1.30179 + 0.i > 1.30211 + 0.i > 1.30257 + 0.i > 1.30268 + 0.i > 1.34742 + 0.i > 1.34745 + 0.i > 1.34827 + 0.i > 1.34845 + 0.i > 1.35084 + 0.i > 1.35085 + 0.i > 1.36396 + 0.i > 1.36397 + 0.i > 1.36462 + 0.i > 1.36466 + 0.i > 1.36931 + 0.i > 1.36973 + 0.i > 1.37666 + 0.i > 1.37668 + 0.i > 1.3813 + 0.i > 1.38144 + 0.i > 1.40369 + 0.i > 1.4043 + 0.i > 1.41065 + 0.i > 1.41108 + 0.i > 1.41788 + 0.i > 1.42358 + 0.i > 1.4236 + 0.i > 1.42376 + 0.i > 1.42376 + 0.i > 1.42417 + 0.i > 1.42649 + 0.i > 1.4265 + 0.i > 1.45085 + 0.i > 1.45403 + 0.i > 1.45407 + 0.i > 1.45408 + 0.i > 1.48153 + 0.i > 1.48178 + 0.i > 1.48257 + 0.i > 1.48285 + 0.i > 1.49974 + 0.i > 1.50306 + 0.i > 1.50322 + 0.i > 1.50531 + 0.i > 1.50533 + 0.i > 1.52388 + 0.i > 1.52389 + 0.i > 1.52647 + 0.i > 1.52651 + 0.i > 1.53664 + 0.i > 1.53809 + 0.i > 1.53809 + 0.i > 1.53813 + 0.i > 1.5383 + 0.i > 1.53846 + 0.i > 1.54051 + 0.i > 1.54722 + 0.i > 1.54724 + 0.i > 1.54724 + 0.i > 1.54841 + 0.i > 1.54889 + 0.i > 1.57043 + 0.i > 1.5721 + 0.i > 1.58658 + 0.i > 1.58678 + 0.i > 1.6039 + 0.i > 1.60416 + 0.i > 1.60877 + 0.i > 1.60896 + 0.i > 1.60942 + 0.i > 1.60954 + 0.i > 1.63187 + 0.i > 1.63223 + 0.i > 1.6468 + 0.i > 1.64683 + 0.i > 1.66346 + 0.i > 1.66348 + 0.i > 1.67861 + 0.i > 1.68121 + 0.i > 1.68151 + 0.i > 1.70128 + 0.i > 1.70146 + 0.i > 1.71076 + 0.i > 1.71132 + 0.i > 1.71362 + 0.i > 1.71366 + 0.i > 1.73403 + 0.i > 1.73465 + 0.i > 1.73479 + 0.i > 1.74324 + 0.i > 1.74327 + 0.i > 1.74354 + 0.i > 1.74354 + 0.i > 1.74419 + 0.i > 1.7508 + 0.i > 1.75082 + 0.i > 1.76674 + 0.i > 1.76702 + 0.i > 1.78801 + 0.i > 1.78817 + 0.i > 1.80169 + 0.i > 1.80507 + 0.i > 1.80564 + 0.i > 1.80578 + 0.i > 1.81023 + 0.i > 1.81038 + 0.i > 1.83173 + 0.i > 1.83187 + 0.i > 1.83281 + 0.i > 1.83288 + 0.i > 1.84212 + 0.i > 1.84215 + 0.i > 1.85367 + 0.i > 1.8537 + 0.i > 1.87126 + 0.i > 1.87299 + 0.i > 1.87655 + 0.i > 1.87656 + 0.i > 1.89401 + 0.i > 1.89404 + 0.i > 1.93557 + 0.i > 1.93584 + 0.i > 1.93787 + 0.i > 1.9379 + 0.i > 1.95212 + 0.i > 1.96311 + 0.i > 1.97136 + 0.i > 1.97138 + 0.i > 1.97138 + 0.i > 1.97192 + 0.i > 1.97218 + 0.i > 1.98881 + 0.i > 1.98909 + 0.i > 2.00743 + 0.i > 2.00744 + 0.i > 2.01614 + 0.i > 2.01641 + 0.i > 2.01714 + 0.i > 2.01731 + 0.i > 2.04198 + 0.i > 2.04202 + 0.i > 2.04887 + 0.i > 2.04913 + 0.i > 2.05054 + 0.i > 2.05063 + 0.i > 2.06708 + 0.i > 2.06709 + 0.i > 2.08633 + 0.i > 2.08636 + 0.i > 2.08982 + 0.i > 2.09 + 0.i > 2.104 + 0.i > 2.10422 + 0.i > 2.15289 + 0.i > 2.15334 + 0.i > 2.16771 + 0.i > 2.16774 + 0.i > 2.23282 + 0.i > 2.233 + 0.i > 2.23696 + 0.i > 2.237 + 0.i > 2.2372 + 0.i > 2.2615 + 0.i > 2.26457 + 0.i > 2.2646 + 0.i > 2.26937 + 0.i > 2.26981 + 0.i > 2.27639 + 0.i > 2.27642 + 0.i > 2.27643 + 0.i > 2.27643 + 0.i > 2.27649 + 0.i > 2.27795 + 0.i > 2.27799 + 0.i > 2.28052 + 0.i > 2.28057 + 0.i > 2.28567 + 0.i > 2.28568 + 0.i > 2.29304 + 0.i > 2.29558 + 0.i > 2.29618 + 0.i > 2.29631 + 0.i > 2.33763 + 0.i > 2.33788 + 0.i > 2.36223 + 0.i > 2.36224 + 0.i > 2.4134 + 0.i > 2.41361 + 0.i > 2.42906 + 0.i > 2.42923 + 0.i > 2.4563 + 0.i > 2.45677 + 0.i > 2.48269 + 0.i > 2.48306 + 0.i > 2.48393 + 0.i > 2.48416 + 0.i > 2.48829 + 0.i > 2.48835 + 0.i > 2.50243 + 0.i > 2.50255 + 0.i > 2.50619 + 0.i > 2.51896 + 0.i > 2.51899 + 0.i > 2.51899 + 0.i > 2.51902 + 0.i > 2.51902 + 0.i > 2.51964 + 0.i > 2.51996 + 0.i > 2.54248 + 0.i > 2.5425 + 0.i > 2.54795 + 0.i > 2.54806 + 0.i > 2.60176 + 0.i > 2.60315 + 0.i > 2.62963 + 0.i > 2.62983 + 0.i > 2.63234 + 0.i > 2.63238 + 0.i > 2.63751 + 0.i > 2.66482 + 0.i > 2.66483 + 0.i > 2.68963 + 0.i > 2.68966 + 0.i > 2.71695 + 0.i > 2.71733 + 0.i > 2.72705 + 0.i > 2.7271 + 0.i > 2.72955 + 0.i > 2.73537 + 0.i > 2.73583 + 0.i > 2.73595 + 0.i > 2.78551 + 0.i > 2.78567 + 0.i > 2.79934 + 0.i > 2.81368 + 0.i > 2.82558 + 0.i > 2.82562 + 0.i > 2.82586 + 0.i > 2.82586 + 0.i > 2.82649 + 0.i > 2.83904 + 0.i > 2.83906 + 0.i > 2.85523 + 0.i > 2.85553 + 0.i > 2.87397 + 0.i > 2.87398 + 0.i > 2.90074 + 0.i > 2.90076 + 0.i > 2.94142 + 0.i > 2.94174 + 0.i > 2.96105 + 0.i > 2.96115 + 0.i > 2.99596 + 0.i > 2.99649 + 0.i > 2.99656 + 0.i > 2.99662 + 0.i > 3.02402 + 0.i > 3.02424 + 0.i > 3.03894 + 0.i > 3.03896 + 0.i > 3.05052 + 0.i > 3.05054 + 0.i > 3.07641 + 0.i > 3.07642 + 0.i > 3.09111 + 0.i > 3.10507 + 0.i > 3.10509 + 0.i > 3.11683 + 0.i > 3.11704 + 0.i > 3.14499 + 0.i > 3.15685 + 0.i > 3.15689 + 0.i > 3.15689 + 0.i > 3.15747 + 0.i > 3.15777 + 0.i > 3.20644 + 0.i > 3.20655 + 0.i > 3.2738 + 0.i > 3.27616 + 0.i > 3.29973 + 0.i > 3.29978 + 0.i > 3.32425 + 0.i > 3.32745 + 0.i > 3.33317 + 0.i > 3.33317 + 0.i > 3.33317 + 0.i > 3.34044 + 0.i > 3.34045 + 0.i > 3.37155 + 0.i > 3.37158 + 0.i > 3.39934 + 0.i > 3.39938 + 0.i > 3.44127 + 0.i > 3.44128 + 0.i > 3.47332 + 0.i > 3.47336 + 0.i > 3.52504 + 0.i > 3.52537 + 0.i > 3.52593 + 0.i > 3.52611 + 0.i > 3.57033 + 0.i > 3.57053 + 0.i > 3.57644 + 0.i > 3.5895 + 0.i > 3.5895 + 0.i > 3.59299 + 0.i > 3.59346 + 0.i > 3.59352 + 0.i > 3.60413 + 0.i > 3.60415 + 0.i > 3.61629 + 0.i > 3.6163 + 0.i > 3.64999 + 0.i > 3.65001 + 0.i > 3.70438 + 0.i > 3.7044 + 0.i > 3.75027 + 0.i > 3.75027 + 0.i > 3.78498 + 0.i > 3.78501 + 0.i > 3.79402 + 0.i > 3.80135 + 0.i > 3.80244 + 0.i > 3.80273 + 0.i > 3.8261 + 0.i > 3.82995 + 0.i > 3.86128 + 0.i > 3.86376 + 0.i > 3.86632 + 0.i > 3.86861 + 0.i > 3.87662 + 0.i > 3.88743 + 0.i > 3.88747 + 0.i > 3.88747 + 0.i > 3.90168 + 0.i > 3.90383 + 0.i > 3.94272 + 0.i > 4.07034 + 0.i > 4.07073 + 0.i > 4.07106 + 0.i > 4.0712 + 0.i > 4.12802 + 0.i > 4.179 + 0.i > 4.179 + 0.i > 4.21785 + 0.i > 4.21785 + 0.i > 4.23041 + 0.i > 4.26551 + 0.i > 4.26984 + 0.i > 4.26984 + 0.i > 4.28215 + 0.i > 4.28222 + 0.i > 4.28253 + 0.i > 4.28253 + 0.i > 4.28439 + 0.i > 4.30964 + 0.i > 4.41513 + 0.i > 4.42009 + 0.i > 4.4201 + 0.i > 4.4201 + 0.i > 4.55339 + 0.i > 4.55351 + 0.i > 4.5543 + 0.i > 4.5544 + 0.i > 4.6759 + 0.i > 4.69125 + 0.i > 4.6913 + 0.i > 4.6913 + 0.i > 4.69141 + 0.i > 4.69152 + 0.i > 4.779 + 0.i > 4.78551 + 0.i > 4.78649 + 0.i > 4.78681 + 0.i > 4.96201 + 0.i > 4.96209 + 0.i > 4.981 + 0.i > 4.98151 + 0.i > 5.06651 + 0.i > 5.19733 + 0.i > 5.21834 + 0.i > 5.2184 + 0.i > 5.2184 + 0.i > 5.2184 + 0.i > 5.21846 + 0.i > 5.49277 + 0.i > 5.50119 + 0.i > 5.50517 + 0.i > 5.5204 + 0.i > 5.52046 + 0.i > 5.52046 + 0.i > 5.52081 + 0.i > 5.52102 + 0.i > 5.5294 + 0.i > 5.52954 + 0.i > 5.5956 + 0.i > 5.59687 + 0.i > 5.59694 + 0.i > 5.59766 + 0.i > 5.6491 + 0.i > 5.64982 + 0.i > 5.64984 + 0.i > 5.64987 + 0.i > 5.8325 + 0.i > 5.93872 + 0.i > 5.95213 + 0.i > 5.95213 + 0.i > 5.95367 + 0.i > 5.95377 + 0.i > 5.96576 + 0.i > 6.13806 + 0.i > 6.13941 + 0.i > 6.36023 + 0.i > 6.37305 + 0.i > 6.37312 + 0.i > 6.37312 + 0.i > 6.37498 + 0.i > 6.37574 + 0.i > 6.8939 + 0.i > 6.92001 + 0.i > 6.92009 + 0.i > 6.92009 + 0.i > 6.92009 + 0.i > 6.92017 + 0.i > 7.10562 + 0.i > 7.12889 + 0.i > 7.12897 + 0.i > 7.12897 + 0.i > 7.13024 + 0.i > 7.13089 + 0.i > 7.40688 + 0.i > 7.46155 + 0.i > 7.47877 + 0.i > 7.49077 + 0.i > 7.49077 + 0.i > 7.49145 + 0.i > 7.49157 + 0.i > 7.49954 + 0.i > 7.56572 + 0.i > 7.56602 + 0.i > 7.76145 + 0.i > 7.76855 + 0.i > 7.76864 + 0.i > 7.76864 + 0.i > 7.8675 + 0.i > 7.86924 + 0.i > 7.93069 + 0.i > 7.93406 + 0.i > 7.93419 + 0.i > 8.58745 + 0.i > 8.58793 + 0.i > 8.65657 + 0.i > 8.65693 + 0.i > 8.65703 + 0.i > 8.65703 + 0.i > 8.76218 + 0.i > 8.76323 + 0.i > 8.76344 + 0.i > 8.76345 + 0.i > 8.76364 + 0.i > 8.76379 + 0.i > 8.84516 + 0.i > 8.84531 + 0.i > 8.84538 + 0.i > 8.84542 + 0.i > 8.84542 + 0.i > 8.84542 + 0.i > 9.96128 + 0.i > 10.0422 + 0.i > 10.3582 + 0.i > 11.1981 + 0.i > 11.5961 + 0.i > 11.5961 + 0.i > 11.5961 + 0.i > 11.5962 + 0.i > 11.5962 + 0.i > 11.5962 + 0.i > 11.5962 + 0.i > 11.5963 + 0.i > 16.048 + 0.i > 17.1999 + 0.i > 17.2057 + 0.i > 18.1546 + 0.i > 18.1548 + 0.i > 18.1548 + 0.i > 18.155 + 0.i > 18.155 + 0.i > 18.155 + 0.i > 53.4484 + 0.i > 285.167 + 0.i > 285.353 + 0.i From mvalera at mail.sdsu.edu Fri Nov 4 19:37:12 2016 From: mvalera at mail.sdsu.edu (Manuel Valera) Date: Fri, 4 Nov 2016 17:37:12 -0700 Subject: [petsc-users] Best way to share variables in fortran ? Message-ID: Hello all, I'm reviving this old post because we are trying to share the petsc objects from outside our iteration routine, this means several levels outside the linear solver script where they are created now, we have tried with fortran modules but right now we have conflicts while taking the includes, if we make the #include in the module it conflicts with the rest of the routines, so we wanted to ask you guys what other option to make the petsc objects available for the entire program we have, carrying them as arguments seems maybe too cumbersome, Thanks for your help, Manuel On Fri, Sep 23, 2016 at 12:39 PM, Barry Smith wrote: > > I don't know much about modules so can't help, but PETSc variables are > just like any other variables and so should behave in the same way. > > Barry > > > On Sep 23, 2016, at 2:31 PM, Manuel Valera > wrote: > > > > Ok, i got this: > > > > RHS loaded, size: 213120 / 213120 > > CSRMAt loaded, sizes: 213120 x 213120 > > 8.43036175 s > > solveP pass: 1 > > RHS loaded, size: 213120 / 213120 > > [0]PETSC ERROR: MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/ > petsc/src/mat/interface/matrix.c Wrong type of object: Parameter # 1 > > > > Program received signal SIGABRT: Process abort signal. > > > > Backtrace for this error: > > #0 0x7F2A35AEA777 > > #1 0x7F2A35AEAD7E > > #2 0x7F2A34FC6CAF > > #3 0x7F2A34FC6C37 > > #4 0x7F2A34FCA027 > > #5 0x7F2A35F6F6AA > > #6 0x7F2A35F6A2EA > > #7 0x7F2A362E2FEF > > #8 0x7F2A36326681 > > #9 0x799AFF in solvepetsclinear_ at SolvePetscLinear.f90:137 > (discriminator 2) > > #10 0x798F6A in solvep_rhs_ at SolveP_Rhs.f90:284 > > #11 0x80D028 in ucmsmain at ucmsMain.f90:472 > > > > .-.-.-.-.-.-.-.- > > > > What is weird for me is why it loads everything as it should for the > first timestep of the problem and then it breaks on the second one, > shouldnt the matrix be loaded at modules and shared with all subroutines? > also, shouldnt the matrix be locked after assembly_final was used ? that > matrix call is Ap which is inside LoadPetscMatrix module, and it looks like > its changed after the first timestep. > > > > > > On Fri, Sep 23, 2016 at 12:18 PM, Barry Smith > wrote: > > > > Ok, so the problem is not memory corruption. > > > > > 0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > [0]PETSC ERROR: Invalid argument > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in > /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > So it looks like the matrix has not been created yet in this call. > You can run with -start_in_debugger noxterm and then type cont in the > debugger and it should stop at this error so you can look at the mat object > to see what its value is. > > > > Barry > > > > > > > > > On Sep 23, 2016, at 2:07 PM, Manuel Valera > wrote: > > > > > > Barry, that was awesome, all the valgrind error dissappeared after > using the mpiexec from petsc folder, the more you know... > > > > > > Anyway this is my output from valgrind running with those options: > > > > > > Last Update: 9/23/2016 12: 5:12 > > > ucmsSeamount Entering MAIN loop. > > > RHS loaded, size: 213120 / 213120 > > > CSRMAt loaded, sizes: 213120 x 213120 > > > 8.32709217 s > > > solveP pass: 1 > > > RHS loaded, size: 213120 / 213120 > > > CSRMAt loaded, sizes: 213120 x 0 > > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > [0]PETSC ERROR: Invalid argument > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/ > documentation/faq.html for trouble shooting. > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > [0]PETSC ERROR: ./ucmsSeamount > > > ?J? on a > arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 > 12:05:03 2016 > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ > --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 > --download-ml?=1 > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in > /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > [0]PETSC ERROR: Invalid argument > > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/ > documentation/faq.html for trouble shooting. > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > [0]PETSC ERROR: ./ucmsSeamount > > > ?J? on a > arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 > 12:05:03 2016 > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ > --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 > --download-ml?=1 > > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c > > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > [0]PETSC ERROR: Nonconforming object sizes > > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not equal > resulting vector number of rows 213120 > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/ > documentation/faq.html for trouble shooting. > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > [0]PETSC ERROR: ./ucmsSeamount > > > ?J? on a > arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 > 12:05:03 2016 > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ > --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 > --download-ml?=1 > > > [0]PETSC ERROR: #3 PCApply() line 474 in /home/valera/v5PETSc/petsc/ > petsc/src/ksp/pc/interface/precon.c > > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > [0]PETSC ERROR: Object is in wrong state > > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/ > documentation/faq.html for trouble shooting. > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > [0]PETSC ERROR: ./ucmsSeamount > > > ?J? on a > arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 > 12:05:03 2016 > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ > --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 > --download-ml?=1 > > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in > /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c > > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > [cli_0]: aborting job: > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > > ============================================================ > ======================= > > > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > > > = PID 6490 RUNNING AT valera-HP-xw4600-Workstation > > > = EXIT CODE: 73 > > > = CLEANING UP REMAINING PROCESSES > > > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > > > ============================================================ > ======================= > > > ==6488== > > > ==6488== HEAP SUMMARY: > > > ==6488== in use at exit: 131,120 bytes in 2 blocks > > > ==6488== total heap usage: 1,224 allocs, 1,222 frees, 249,285 bytes > allocated > > > ==6488== > > > ==6488== LEAK SUMMARY: > > > ==6488== definitely lost: 0 bytes in 0 blocks > > > ==6488== indirectly lost: 0 bytes in 0 blocks > > > ==6488== possibly lost: 0 bytes in 0 blocks > > > ==6488== still reachable: 131,120 bytes in 2 blocks > > > ==6488== suppressed: 0 bytes in 0 blocks > > > ==6488== Rerun with --leak-check=full to see details of leaked memory > > > ==6488== > > > ==6488== For counts of detected and suppressed errors, rerun with: -v > > > ==6488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) > > > > > > > > > On Fri, Sep 23, 2016 at 11:15 AM, Barry Smith > wrote: > > > > > > > On Sep 23, 2016, at 1:09 PM, Manuel Valera > wrote: > > > > > > > > Thanks Barry, for the quick reply, > > > > > > > > I tried doing that once recently, not for this problem though, but > it looks like the model i'm working on isn't optimized at all for memory > leaks, and valgrind stopped with thousands of errors before reaching this > part of the execution. > > > > > > Some MPI implementations by default produce many meaningless > valgrind messages. So make sure you ./configure PETSc with --download-mpich > this version will not produce any meaningless valgrind messages about MPI. > > > > > > You are not concerned with "memory leaks" in this exercise, only > with using uninitialized memory or overwriting memory you should not > overwrite. So you want valgrind arguments like -q --tool=memcheck > --num-callers=20 --track-origins=yes you do not need --leak-check=yes > > > > > > So run with valgrind and email use the output and we may have > suggestions on the cause. > > > > > > Barry > > > > > > > > > > > > > > > > > Is there maybe an alternative approach ? or it would be better to > just get the model in better shape already ? > > > > > > > > Thanks > > > > > > > > On Fri, Sep 23, 2016 at 10:53 AM, Barry Smith > wrote: > > > > > > > > Run with valgrind to find the exact location of the first memory > corruption. http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > > > > > > > > > On Sep 23, 2016, at 12:47 PM, Manuel Valera > wrote: > > > > > > > > > > Hello all, > > > > > > > > > > I'm trying to load my laplacian matrix into a fortran module, and > i have implemented it and it works for the first iteration of laplacian > solver, but when starts the second step the laplacian matrix object becomes > corrupts and looks like it loses one of it's dimensions. > > > > > > > > > > Can you help me understand whats happening? > > > > > > > > > > The modules are attached, the error i get is the following, i > bolded the lines where i detected corruption: > > > > > > > > > > ucmsSeamount Entering MAIN loop. > > > > > RHS loaded, size: 213120 / 213120 > > > > > CSRMAt loaded, sizes: 213120 x 213120 > > > > > 8.39198399 s > > > > > solveP pass: 1 !Iteration number > > > > > RHS loaded, size: 213120 / 213120 > > > > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > > > [0]PETSC ERROR: Invalid argument > > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/ > documentation/faq.html for trouble shooting. > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > [0]PETSC ERROR: ./ucmsSeamount > > > ?J? on a > arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 > 10:27:21 2016 > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ > --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 > --download-ml?=1 > > > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in > /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > > CSRMAt loaded, sizes: 213120 x 0 > > > > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > > > [0]PETSC ERROR: Invalid argument > > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/ > documentation/faq.html for trouble shooting. > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > [0]PETSC ERROR: ./ucmsSeamount > > > ?J? on a > arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 > 10:27:21 2016 > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ > --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 > --download-ml?=1 > > > > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c > > > > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > > > [0]PETSC ERROR: Nonconforming object sizes > > > > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not > equal resulting vector number of rows 213120 > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/ > documentation/faq.html for trouble shooting. > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > [0]PETSC ERROR: ./ucmsSeamount > > > ?J? on a > arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 > 10:27:21 2016 > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ > --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 > --download-ml?=1 > > > > > [0]PETSC ERROR: #3 PCApply() line 474 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > > > > > [0]PETSC ERROR: Object is in wrong state > > > > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/ > documentation/faq.html for trouble shooting. > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > [0]PETSC ERROR: ./ucmsSeamount > > > ?J? on a > arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 > 10:27:21 2016 > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ > --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 > --download-ml?=1 > > > > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in > /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c > > > > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in > /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c > > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > [unset]: aborting job: > > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Fri Nov 4 20:15:07 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 4 Nov 2016 20:15:07 -0500 Subject: [petsc-users] Best way to share variables in fortran ? In-Reply-To: References: Message-ID: For some of the includes once you include them in a module you cannot include them in routines that use the module. This is generally true for includes that do not have def at the end of the filename before the prefix. Just let us know what errors you are getting and we can probably determine what includes you should not "reinclude" Barry > On Nov 4, 2016, at 7:37 PM, Manuel Valera wrote: > > Hello all, > > I'm reviving this old post because we are trying to share the petsc objects from outside our iteration routine, this means several levels outside the linear solver script where they are created now, > > we have tried with fortran modules but right now we have conflicts while taking the includes, if we make the #include in the module it conflicts with the rest of the routines, so we wanted to ask you guys what other option to make the petsc objects available for the entire program we have, carrying them as arguments seems maybe too cumbersome, > > Thanks for your help, > > Manuel > > > > On Fri, Sep 23, 2016 at 12:39 PM, Barry Smith wrote: > > I don't know much about modules so can't help, but PETSc variables are just like any other variables and so should behave in the same way. > > Barry > > > On Sep 23, 2016, at 2:31 PM, Manuel Valera wrote: > > > > Ok, i got this: > > > > RHS loaded, size: 213120 / 213120 > > CSRMAt loaded, sizes: 213120 x 213120 > > 8.43036175 s > > solveP pass: 1 > > RHS loaded, size: 213120 / 213120 > > [0]PETSC ERROR: MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c Wrong type of object: Parameter # 1 > > > > Program received signal SIGABRT: Process abort signal. > > > > Backtrace for this error: > > #0 0x7F2A35AEA777 > > #1 0x7F2A35AEAD7E > > #2 0x7F2A34FC6CAF > > #3 0x7F2A34FC6C37 > > #4 0x7F2A34FCA027 > > #5 0x7F2A35F6F6AA > > #6 0x7F2A35F6A2EA > > #7 0x7F2A362E2FEF > > #8 0x7F2A36326681 > > #9 0x799AFF in solvepetsclinear_ at SolvePetscLinear.f90:137 (discriminator 2) > > #10 0x798F6A in solvep_rhs_ at SolveP_Rhs.f90:284 > > #11 0x80D028 in ucmsmain at ucmsMain.f90:472 > > > > .-.-.-.-.-.-.-.- > > > > What is weird for me is why it loads everything as it should for the first timestep of the problem and then it breaks on the second one, shouldnt the matrix be loaded at modules and shared with all subroutines? also, shouldnt the matrix be locked after assembly_final was used ? that matrix call is Ap which is inside LoadPetscMatrix module, and it looks like its changed after the first timestep. > > > > > > On Fri, Sep 23, 2016 at 12:18 PM, Barry Smith wrote: > > > > Ok, so the problem is not memory corruption. > > > > > 0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > [0]PETSC ERROR: Invalid argument > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > So it looks like the matrix has not been created yet in this call. You can run with -start_in_debugger noxterm and then type cont in the debugger and it should stop at this error so you can look at the mat object to see what its value is. > > > > Barry > > > > > > > > > On Sep 23, 2016, at 2:07 PM, Manuel Valera wrote: > > > > > > Barry, that was awesome, all the valgrind error dissappeared after using the mpiexec from petsc folder, the more you know... > > > > > > Anyway this is my output from valgrind running with those options: > > > > > > Last Update: 9/23/2016 12: 5:12 > > > ucmsSeamount Entering MAIN loop. > > > RHS loaded, size: 213120 / 213120 > > > CSRMAt loaded, sizes: 213120 x 213120 > > > 8.32709217 s > > > solveP pass: 1 > > > RHS loaded, size: 213120 / 213120 > > > CSRMAt loaded, sizes: 213120 x 0 > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > [0]PETSC ERROR: Invalid argument > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > [0]PETSC ERROR: ./ucmsSeamount ?J? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 12:05:03 2016 > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > [0]PETSC ERROR: Invalid argument > > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > [0]PETSC ERROR: ./ucmsSeamount ?J? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 12:05:03 2016 > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > [0]PETSC ERROR: Nonconforming object sizes > > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not equal resulting vector number of rows 213120 > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > [0]PETSC ERROR: ./ucmsSeamount ?J? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 12:05:03 2016 > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > [0]PETSC ERROR: #3 PCApply() line 474 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > [0]PETSC ERROR: Object is in wrong state > > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > [0]PETSC ERROR: ./ucmsSeamount ?J? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 12:05:03 2016 > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c > > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > [cli_0]: aborting job: > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > > =================================================================================== > > > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > > > = PID 6490 RUNNING AT valera-HP-xw4600-Workstation > > > = EXIT CODE: 73 > > > = CLEANING UP REMAINING PROCESSES > > > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > > > =================================================================================== > > > ==6488== > > > ==6488== HEAP SUMMARY: > > > ==6488== in use at exit: 131,120 bytes in 2 blocks > > > ==6488== total heap usage: 1,224 allocs, 1,222 frees, 249,285 bytes allocated > > > ==6488== > > > ==6488== LEAK SUMMARY: > > > ==6488== definitely lost: 0 bytes in 0 blocks > > > ==6488== indirectly lost: 0 bytes in 0 blocks > > > ==6488== possibly lost: 0 bytes in 0 blocks > > > ==6488== still reachable: 131,120 bytes in 2 blocks > > > ==6488== suppressed: 0 bytes in 0 blocks > > > ==6488== Rerun with --leak-check=full to see details of leaked memory > > > ==6488== > > > ==6488== For counts of detected and suppressed errors, rerun with: -v > > > ==6488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) > > > > > > > > > On Fri, Sep 23, 2016 at 11:15 AM, Barry Smith wrote: > > > > > > > On Sep 23, 2016, at 1:09 PM, Manuel Valera wrote: > > > > > > > > Thanks Barry, for the quick reply, > > > > > > > > I tried doing that once recently, not for this problem though, but it looks like the model i'm working on isn't optimized at all for memory leaks, and valgrind stopped with thousands of errors before reaching this part of the execution. > > > > > > Some MPI implementations by default produce many meaningless valgrind messages. So make sure you ./configure PETSc with --download-mpich this version will not produce any meaningless valgrind messages about MPI. > > > > > > You are not concerned with "memory leaks" in this exercise, only with using uninitialized memory or overwriting memory you should not overwrite. So you want valgrind arguments like -q --tool=memcheck --num-callers=20 --track-origins=yes you do not need --leak-check=yes > > > > > > So run with valgrind and email use the output and we may have suggestions on the cause. > > > > > > Barry > > > > > > > > > > > > > > > > > Is there maybe an alternative approach ? or it would be better to just get the model in better shape already ? > > > > > > > > Thanks > > > > > > > > On Fri, Sep 23, 2016 at 10:53 AM, Barry Smith wrote: > > > > > > > > Run with valgrind to find the exact location of the first memory corruption. http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > > > > > > > > > On Sep 23, 2016, at 12:47 PM, Manuel Valera wrote: > > > > > > > > > > Hello all, > > > > > > > > > > I'm trying to load my laplacian matrix into a fortran module, and i have implemented it and it works for the first iteration of laplacian solver, but when starts the second step the laplacian matrix object becomes corrupts and looks like it loses one of it's dimensions. > > > > > > > > > > Can you help me understand whats happening? > > > > > > > > > > The modules are attached, the error i get is the following, i bolded the lines where i detected corruption: > > > > > > > > > > ucmsSeamount Entering MAIN loop. > > > > > RHS loaded, size: 213120 / 213120 > > > > > CSRMAt loaded, sizes: 213120 x 213120 > > > > > 8.39198399 s > > > > > solveP pass: 1 !Iteration number > > > > > RHS loaded, size: 213120 / 213120 > > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > > [0]PETSC ERROR: Invalid argument > > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > [0]PETSC ERROR: ./ucmsSeamount ?J? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 10:27:21 2016 > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > > CSRMAt loaded, sizes: 213120 x 0 > > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > > [0]PETSC ERROR: Invalid argument > > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > [0]PETSC ERROR: ./ucmsSeamount ?J? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 10:27:21 2016 > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c > > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > > [0]PETSC ERROR: Nonconforming object sizes > > > > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not equal resulting vector number of rows 213120 > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > [0]PETSC ERROR: ./ucmsSeamount ?J? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 10:27:21 2016 > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > > [0]PETSC ERROR: #3 PCApply() line 474 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > > [0]PETSC ERROR: Object is in wrong state > > > > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > [0]PETSC ERROR: ./ucmsSeamount ?J? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 10:27:21 2016 > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c > > > > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c > > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > [unset]: aborting job: > > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > From balay at mcs.anl.gov Fri Nov 4 20:32:33 2016 From: balay at mcs.anl.gov (Satish Balay) Date: Fri, 4 Nov 2016 20:32:33 -0500 Subject: [petsc-users] Best way to share variables in fortran ? In-Reply-To: References: Message-ID: you can check src/ksp/ksp/examples/tutorials/ex44f.F90 for example usage.. Satish On Fri, 4 Nov 2016, Barry Smith wrote: > > For some of the includes once you include them in a module you cannot include them in routines that use the module. This is generally true for includes that do not have def at the end of the filename before the prefix. Just let us know what errors you are getting and we can probably determine what includes you should not "reinclude" > > Barry > > > On Nov 4, 2016, at 7:37 PM, Manuel Valera wrote: > > > > Hello all, > > > > I'm reviving this old post because we are trying to share the petsc objects from outside our iteration routine, this means several levels outside the linear solver script where they are created now, > > > > we have tried with fortran modules but right now we have conflicts while taking the includes, if we make the #include in the module it conflicts with the rest of the routines, so we wanted to ask you guys what other option to make the petsc objects available for the entire program we have, carrying them as arguments seems maybe too cumbersome, > > > > Thanks for your help, > > > > Manuel > > > > > > > > On Fri, Sep 23, 2016 at 12:39 PM, Barry Smith wrote: > > > > I don't know much about modules so can't help, but PETSc variables are just like any other variables and so should behave in the same way. > > > > Barry > > > > > On Sep 23, 2016, at 2:31 PM, Manuel Valera wrote: > > > > > > Ok, i got this: > > > > > > RHS loaded, size: 213120 / 213120 > > > CSRMAt loaded, sizes: 213120 x 213120 > > > 8.43036175 s > > > solveP pass: 1 > > > RHS loaded, size: 213120 / 213120 > > > [0]PETSC ERROR: MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c Wrong type of object: Parameter # 1 > > > > > > Program received signal SIGABRT: Process abort signal. > > > > > > Backtrace for this error: > > > #0 0x7F2A35AEA777 > > > #1 0x7F2A35AEAD7E > > > #2 0x7F2A34FC6CAF > > > #3 0x7F2A34FC6C37 > > > #4 0x7F2A34FCA027 > > > #5 0x7F2A35F6F6AA > > > #6 0x7F2A35F6A2EA > > > #7 0x7F2A362E2FEF > > > #8 0x7F2A36326681 > > > #9 0x799AFF in solvepetsclinear_ at SolvePetscLinear.f90:137 (discriminator 2) > > > #10 0x798F6A in solvep_rhs_ at SolveP_Rhs.f90:284 > > > #11 0x80D028 in ucmsmain at ucmsMain.f90:472 > > > > > > .-.-.-.-.-.-.-.- > > > > > > What is weird for me is why it loads everything as it should for the first timestep of the problem and then it breaks on the second one, shouldnt the matrix be loaded at modules and shared with all subroutines? also, shouldnt the matrix be locked after assembly_final was used ? that matrix call is Ap which is inside LoadPetscMatrix module, and it looks like its changed after the first timestep. > > > > > > > > > On Fri, Sep 23, 2016 at 12:18 PM, Barry Smith wrote: > > > > > > Ok, so the problem is not memory corruption. > > > > > > > 0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > [0]PETSC ERROR: Invalid argument > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > > > So it looks like the matrix has not been created yet in this call. You can run with -start_in_debugger noxterm and then type cont in the debugger and it should stop at this error so you can look at the mat object to see what its value is. > > > > > > Barry > > > > > > > > > > > > > On Sep 23, 2016, at 2:07 PM, Manuel Valera wrote: > > > > > > > > Barry, that was awesome, all the valgrind error dissappeared after using the mpiexec from petsc folder, the more you know... > > > > > > > > Anyway this is my output from valgrind running with those options: > > > > > > > > Last Update: 9/23/2016 12: 5:12 > > > > ucmsSeamount Entering MAIN loop. > > > > RHS loaded, size: 213120 / 213120 > > > > CSRMAt loaded, sizes: 213120 x 213120 > > > > 8.32709217 s > > > > solveP pass: 1 > > > > RHS loaded, size: 213120 / 213120 > > > > CSRMAt loaded, sizes: 213120 x 0 > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > [0]PETSC ERROR: Invalid argument > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > [0]PETSC ERROR: ./ucmsSeamount ???J??? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 12:05:03 2016 > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > [0]PETSC ERROR: Invalid argument > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > [0]PETSC ERROR: ./ucmsSeamount ???J??? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 12:05:03 2016 > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > [0]PETSC ERROR: Nonconforming object sizes > > > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not equal resulting vector number of rows 213120 > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > [0]PETSC ERROR: ./ucmsSeamount ???J??? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 12:05:03 2016 > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > [0]PETSC ERROR: #3 PCApply() line 474 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > [0]PETSC ERROR: Object is in wrong state > > > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > [0]PETSC ERROR: ./ucmsSeamount ???J??? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 12:05:03 2016 > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c > > > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > [cli_0]: aborting job: > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > > > > =================================================================================== > > > > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > > > > = PID 6490 RUNNING AT valera-HP-xw4600-Workstation > > > > = EXIT CODE: 73 > > > > = CLEANING UP REMAINING PROCESSES > > > > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > > > > =================================================================================== > > > > ==6488== > > > > ==6488== HEAP SUMMARY: > > > > ==6488== in use at exit: 131,120 bytes in 2 blocks > > > > ==6488== total heap usage: 1,224 allocs, 1,222 frees, 249,285 bytes allocated > > > > ==6488== > > > > ==6488== LEAK SUMMARY: > > > > ==6488== definitely lost: 0 bytes in 0 blocks > > > > ==6488== indirectly lost: 0 bytes in 0 blocks > > > > ==6488== possibly lost: 0 bytes in 0 blocks > > > > ==6488== still reachable: 131,120 bytes in 2 blocks > > > > ==6488== suppressed: 0 bytes in 0 blocks > > > > ==6488== Rerun with --leak-check=full to see details of leaked memory > > > > ==6488== > > > > ==6488== For counts of detected and suppressed errors, rerun with: -v > > > > ==6488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) > > > > > > > > > > > > On Fri, Sep 23, 2016 at 11:15 AM, Barry Smith wrote: > > > > > > > > > On Sep 23, 2016, at 1:09 PM, Manuel Valera wrote: > > > > > > > > > > Thanks Barry, for the quick reply, > > > > > > > > > > I tried doing that once recently, not for this problem though, but it looks like the model i'm working on isn't optimized at all for memory leaks, and valgrind stopped with thousands of errors before reaching this part of the execution. > > > > > > > > Some MPI implementations by default produce many meaningless valgrind messages. So make sure you ./configure PETSc with --download-mpich this version will not produce any meaningless valgrind messages about MPI. > > > > > > > > You are not concerned with "memory leaks" in this exercise, only with using uninitialized memory or overwriting memory you should not overwrite. So you want valgrind arguments like -q --tool=memcheck --num-callers=20 --track-origins=yes you do not need --leak-check=yes > > > > > > > > So run with valgrind and email use the output and we may have suggestions on the cause. > > > > > > > > Barry > > > > > > > > > > > > > > > > > > > > > > Is there maybe an alternative approach ? or it would be better to just get the model in better shape already ? > > > > > > > > > > Thanks > > > > > > > > > > On Fri, Sep 23, 2016 at 10:53 AM, Barry Smith wrote: > > > > > > > > > > Run with valgrind to find the exact location of the first memory corruption. http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > > > > > > > > > > > On Sep 23, 2016, at 12:47 PM, Manuel Valera wrote: > > > > > > > > > > > > Hello all, > > > > > > > > > > > > I'm trying to load my laplacian matrix into a fortran module, and i have implemented it and it works for the first iteration of laplacian solver, but when starts the second step the laplacian matrix object becomes corrupts and looks like it loses one of it's dimensions. > > > > > > > > > > > > Can you help me understand whats happening? > > > > > > > > > > > > The modules are attached, the error i get is the following, i bolded the lines where i detected corruption: > > > > > > > > > > > > ucmsSeamount Entering MAIN loop. > > > > > > RHS loaded, size: 213120 / 213120 > > > > > > CSRMAt loaded, sizes: 213120 x 213120 > > > > > > 8.39198399 s > > > > > > solveP pass: 1 !Iteration number > > > > > > RHS loaded, size: 213120 / 213120 > > > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > > > [0]PETSC ERROR: Invalid argument > > > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 > > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > > [0]PETSC ERROR: ./ucmsSeamount ???J??? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 10:27:21 2016 > > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > > > CSRMAt loaded, sizes: 213120 x 0 > > > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > > > [0]PETSC ERROR: Invalid argument > > > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 > > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > > [0]PETSC ERROR: ./ucmsSeamount ???J??? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 10:27:21 2016 > > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c > > > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > > > [0]PETSC ERROR: Nonconforming object sizes > > > > > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not equal resulting vector number of rows 213120 > > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > > [0]PETSC ERROR: ./ucmsSeamount ???J??? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 10:27:21 2016 > > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > > > [0]PETSC ERROR: #3 PCApply() line 474 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > > > > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > > > > > > [0]PETSC ERROR: Object is in wrong state > > > > > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 > > > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > > > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown > > > > > > [0]PETSC ERROR: ./ucmsSeamount ???J??? on a arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 10:27:21 2016 > > > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 --download-ml?=1 > > > > > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c > > > > > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c > > > > > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c > > > > > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c > > > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > > [unset]: aborting job: > > > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > From knepley at gmail.com Fri Nov 4 22:19:41 2016 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 4 Nov 2016 22:19:41 -0500 Subject: [petsc-users] Best way to share variables in fortran ? In-Reply-To: References: Message-ID: On Fri, Nov 4, 2016 at 7:37 PM, Manuel Valera wrote: > Hello all, > > I'm reviving this old post because we are trying to share the petsc > objects from outside our iteration routine, this means several levels > outside the linear solver script where they are created now, > > we have tried with fortran modules but right now we have conflicts while > taking the includes, if we make the #include in the module it conflicts > with the rest of the routines, so we wanted to ask you guys what other > option to make the petsc objects available for the entire program we have, > carrying them as arguments seems maybe too cumbersome, > Use the Fortran modules http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Sys/UsingFortran.html although I would delicately recommend a language with a non-broken scoping model. Matt > Thanks for your help, > > Manuel > > > > On Fri, Sep 23, 2016 at 12:39 PM, Barry Smith wrote: > >> >> I don't know much about modules so can't help, but PETSc variables are >> just like any other variables and so should behave in the same way. >> >> Barry >> >> > On Sep 23, 2016, at 2:31 PM, Manuel Valera >> wrote: >> > >> > Ok, i got this: >> > >> > RHS loaded, size: 213120 / 213120 >> > CSRMAt loaded, sizes: 213120 x 213120 >> > 8.43036175 s >> > solveP pass: 1 >> > RHS loaded, size: 213120 / 213120 >> > [0]PETSC ERROR: MatGetSize() line 6295 in /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >> Wrong type of object: Parameter # 1 >> > >> > Program received signal SIGABRT: Process abort signal. >> > >> > Backtrace for this error: >> > #0 0x7F2A35AEA777 >> > #1 0x7F2A35AEAD7E >> > #2 0x7F2A34FC6CAF >> > #3 0x7F2A34FC6C37 >> > #4 0x7F2A34FCA027 >> > #5 0x7F2A35F6F6AA >> > #6 0x7F2A35F6A2EA >> > #7 0x7F2A362E2FEF >> > #8 0x7F2A36326681 >> > #9 0x799AFF in solvepetsclinear_ at SolvePetscLinear.f90:137 >> (discriminator 2) >> > #10 0x798F6A in solvep_rhs_ at SolveP_Rhs.f90:284 >> > #11 0x80D028 in ucmsmain at ucmsMain.f90:472 >> > >> > .-.-.-.-.-.-.-.- >> > >> > What is weird for me is why it loads everything as it should for the >> first timestep of the problem and then it breaks on the second one, >> shouldnt the matrix be loaded at modules and shared with all subroutines? >> also, shouldnt the matrix be locked after assembly_final was used ? that >> matrix call is Ap which is inside LoadPetscMatrix module, and it looks like >> its changed after the first timestep. >> > >> > >> > On Fri, Sep 23, 2016 at 12:18 PM, Barry Smith >> wrote: >> > >> > Ok, so the problem is not memory corruption. >> > >> > > 0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > [0]PETSC ERROR: Invalid argument >> > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 >> > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in >> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >> > >> > So it looks like the matrix has not been created yet in this call. >> You can run with -start_in_debugger noxterm and then type cont in the >> debugger and it should stop at this error so you can look at the mat object >> to see what its value is. >> > >> > Barry >> > >> > >> > >> > > On Sep 23, 2016, at 2:07 PM, Manuel Valera >> wrote: >> > > >> > > Barry, that was awesome, all the valgrind error dissappeared after >> using the mpiexec from petsc folder, the more you know... >> > > >> > > Anyway this is my output from valgrind running with those options: >> > > >> > > Last Update: 9/23/2016 12: 5:12 >> > > ucmsSeamount Entering MAIN loop. >> > > RHS loaded, size: 213120 / 213120 >> > > CSRMAt loaded, sizes: 213120 x 213120 >> > > 8.32709217 s >> > > solveP pass: 1 >> > > RHS loaded, size: 213120 / 213120 >> > > CSRMAt loaded, sizes: 213120 x 0 >> > > [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > [0]PETSC ERROR: Invalid argument >> > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 >> > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >> ocumentation/faq.html for trouble shooting. >> > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >> > > [0]PETSC ERROR: ./ucmsSeamount >> >> >> ?J? on a >> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >> 12:05:03 2016 >> > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >> --download-ml?=1 >> > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in >> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >> > > [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > [0]PETSC ERROR: Invalid argument >> > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 >> > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >> ocumentation/faq.html for trouble shooting. >> > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >> > > [0]PETSC ERROR: ./ucmsSeamount >> >> >> ?J? on a >> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >> 12:05:03 2016 >> > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >> --download-ml?=1 >> > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c >> > > [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > [0]PETSC ERROR: Nonconforming object sizes >> > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not equal >> resulting vector number of rows 213120 >> > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >> ocumentation/faq.html for trouble shooting. >> > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >> > > [0]PETSC ERROR: ./ucmsSeamount >> >> >> ?J? on a >> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >> 12:05:03 2016 >> > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >> --download-ml?=1 >> > > [0]PETSC ERROR: #3 PCApply() line 474 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c >> > > [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > [0]PETSC ERROR: Object is in wrong state >> > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 >> > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >> ocumentation/faq.html for trouble shooting. >> > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >> > > [0]PETSC ERROR: ./ucmsSeamount >> >> >> ?J? on a >> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >> 12:05:03 2016 >> > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >> --download-ml?=1 >> > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in >> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >> > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c >> > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c >> > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c >> > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >> > > [cli_0]: aborting job: >> > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >> > > >> > > ============================================================ >> ======================= >> > > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES >> > > = PID 6490 RUNNING AT valera-HP-xw4600-Workstation >> > > = EXIT CODE: 73 >> > > = CLEANING UP REMAINING PROCESSES >> > > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES >> > > ============================================================ >> ======================= >> > > ==6488== >> > > ==6488== HEAP SUMMARY: >> > > ==6488== in use at exit: 131,120 bytes in 2 blocks >> > > ==6488== total heap usage: 1,224 allocs, 1,222 frees, 249,285 bytes >> allocated >> > > ==6488== >> > > ==6488== LEAK SUMMARY: >> > > ==6488== definitely lost: 0 bytes in 0 blocks >> > > ==6488== indirectly lost: 0 bytes in 0 blocks >> > > ==6488== possibly lost: 0 bytes in 0 blocks >> > > ==6488== still reachable: 131,120 bytes in 2 blocks >> > > ==6488== suppressed: 0 bytes in 0 blocks >> > > ==6488== Rerun with --leak-check=full to see details of leaked memory >> > > ==6488== >> > > ==6488== For counts of detected and suppressed errors, rerun with: -v >> > > ==6488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from >> 0) >> > > >> > > >> > > On Fri, Sep 23, 2016 at 11:15 AM, Barry Smith >> wrote: >> > > >> > > > On Sep 23, 2016, at 1:09 PM, Manuel Valera >> wrote: >> > > > >> > > > Thanks Barry, for the quick reply, >> > > > >> > > > I tried doing that once recently, not for this problem though, but >> it looks like the model i'm working on isn't optimized at all for memory >> leaks, and valgrind stopped with thousands of errors before reaching this >> part of the execution. >> > > >> > > Some MPI implementations by default produce many meaningless >> valgrind messages. So make sure you ./configure PETSc with --download-mpich >> this version will not produce any meaningless valgrind messages about MPI. >> > > >> > > You are not concerned with "memory leaks" in this exercise, only >> with using uninitialized memory or overwriting memory you should not >> overwrite. So you want valgrind arguments like -q --tool=memcheck >> --num-callers=20 --track-origins=yes you do not need --leak-check=yes >> > > >> > > So run with valgrind and email use the output and we may have >> suggestions on the cause. >> > > >> > > Barry >> > > >> > > >> > > >> > > > >> > > > Is there maybe an alternative approach ? or it would be better to >> just get the model in better shape already ? >> > > > >> > > > Thanks >> > > > >> > > > On Fri, Sep 23, 2016 at 10:53 AM, Barry Smith >> wrote: >> > > > >> > > > Run with valgrind to find the exact location of the first memory >> corruption. http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >> > > > >> > > > > On Sep 23, 2016, at 12:47 PM, Manuel Valera < >> mvalera at mail.sdsu.edu> wrote: >> > > > > >> > > > > Hello all, >> > > > > >> > > > > I'm trying to load my laplacian matrix into a fortran module, and >> i have implemented it and it works for the first iteration of laplacian >> solver, but when starts the second step the laplacian matrix object becomes >> corrupts and looks like it loses one of it's dimensions. >> > > > > >> > > > > Can you help me understand whats happening? >> > > > > >> > > > > The modules are attached, the error i get is the following, i >> bolded the lines where i detected corruption: >> > > > > >> > > > > ucmsSeamount Entering MAIN loop. >> > > > > RHS loaded, size: 213120 / 213120 >> > > > > CSRMAt loaded, sizes: 213120 x 213120 >> > > > > 8.39198399 s >> > > > > solveP pass: 1 !Iteration number >> > > > > RHS loaded, size: 213120 / 213120 >> > > > > [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > > > [0]PETSC ERROR: Invalid argument >> > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 >> > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >> ocumentation/faq.html for trouble shooting. >> > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >> > > > > [0]PETSC ERROR: ./ucmsSeamount >> >> >> ?J? on a >> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >> 10:27:21 2016 >> > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >> --download-ml?=1 >> > > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in >> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >> > > > > CSRMAt loaded, sizes: 213120 x 0 >> > > > > [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > > > [0]PETSC ERROR: Invalid argument >> > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 >> > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >> ocumentation/faq.html for trouble shooting. >> > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >> > > > > [0]PETSC ERROR: ./ucmsSeamount >> >> >> ?J? on a >> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >> 10:27:21 2016 >> > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >> --download-ml?=1 >> > > > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c >> > > > > [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > > > [0]PETSC ERROR: Nonconforming object sizes >> > > > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not >> equal resulting vector number of rows 213120 >> > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >> ocumentation/faq.html for trouble shooting. >> > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >> > > > > [0]PETSC ERROR: ./ucmsSeamount >> >> >> ?J? on a >> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >> 10:27:21 2016 >> > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >> --download-ml?=1 >> > > > > [0]PETSC ERROR: #3 PCApply() line 474 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c >> > > > > [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> > > > > [0]PETSC ERROR: Object is in wrong state >> > > > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 >> > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >> ocumentation/faq.html for trouble shooting. >> > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >> > > > > [0]PETSC ERROR: ./ucmsSeamount >> >> >> ?J? on a >> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >> 10:27:21 2016 >> > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >> --download-ml?=1 >> > > > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in >> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >> > > > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c >> > > > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c >> > > > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in >> /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c >> > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >> > > > > [unset]: aborting job: >> > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >> > > > > >> > > > > >> > > > >> > > > >> > > >> > > >> > >> > >> >> > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From leejearl at 126.com Sat Nov 5 06:17:49 2016 From: leejearl at 126.com (leejearl) Date: Sat, 5 Nov 2016 19:17:49 +0800 Subject: [petsc-users] how to output components of a section Message-ID: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> Hi, all: I meet a problems which I can not overcome. The programe is like the code in "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/examples/tutorials/ex1.c.html". The code create a section which has three fields: u,v,w. How can I output the fields u and v without together with w? Thanks! leejearl From Sander.Arens at ugent.be Sat Nov 5 06:29:50 2016 From: Sander.Arens at ugent.be (Sander Arens) Date: Sat, 5 Nov 2016 12:29:50 +0100 Subject: [petsc-users] how to output components of a section In-Reply-To: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> Message-ID: You can first obtain an IS with http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMCreateSubDM.html and with that you can obtain a subvector with http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Vec/VecGetSubVector.html which you can then view the usual way. Thanks, Sander On 5 November 2016 at 12:17, leejearl wrote: > Hi, all: > > I meet a problems which I can not overcome. The programe is like the > code in > > "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/ple > x/examples/tutorials/ex1.c.html". > > The code create a section which has three fields: u,v,w. How can I > output the fields u and v without together with w? > > Thanks! > > > leejearl > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mvalera at mail.sdsu.edu Sat Nov 5 19:35:52 2016 From: mvalera at mail.sdsu.edu (Manuel Valera) Date: Sat, 5 Nov 2016 17:35:52 -0700 Subject: [petsc-users] Error reading binary file Message-ID: Hello all, In the model we are working now, we are using a big laplacian matrix written as a binary file that is read in each iteration to solve for pressure, in a particular testcase and always for iteration 1008 we get the following error, any ideas why this would be ? Thanks : solveP pass: 1008 RHS loaded, size: 200000 / 200000 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Unable to open file [0]PETSC ERROR: Cannot open file laplacian.petsc for reading [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.7.4, unknown [0]PETSC ERROR: ./ucmsLEP on a arch-linux2-c-debug named node21 by valera Sat Nov 5 16:23:47 2016 [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack --download-mpich --download-hdf5 --download-netcdf --download-hypre --download-metis --download-parmetis --download-superlu_dist --download-cmake --with-cxx-dialect=C++11 [0]PETSC ERROR: #1 PetscViewerFileSetUp_Binary() line 1249 in /usr/dataC/home/valera/petsc/src/sys/classes/viewer/impls/binary/binv.c [0]PETSC ERROR: #2 PetscViewerSetUp_Binary() line 1387 in /usr/dataC/home/valera/petsc/src/sys/classes/viewer/impls/binary/binv.c [0]PETSC ERROR: #3 PetscViewerSetUp() line 336 in /usr/dataC/home/valera/petsc/src/sys/classes/viewer/interface/view.c [0]PETSC ERROR: #4 MatLoad_SeqAIJ() line 4152 in /usr/dataC/home/valera/petsc/src/mat/impls/aij/seq/aij.c [0]PETSC ERROR: #5 MatLoad() line 1013 in /usr/dataC/home/valera/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Nonconforming object sizes [0]PETSC ERROR: Preconditioner number of local rows -1 does not equal resulting vector number of rows 200000 [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.7.4, unknown [0]PETSC ERROR: ./ucmsLEP on a arch-linux2-c-debug named node21 by valera Sat Nov 5 16:23:47 2016 [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack --download-mpich --download-hdf5 --download-netcdf --download-hypre --download-metis --download-parmetis --download-superlu_dist --download-cmake --with-cxx-dialect=C++11 [0]PETSC ERROR: #6 PCApply() line 474 in /usr/dataC/home/valera/petsc/src/ksp/pc/interface/precon.c [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Object is in wrong state [0]PETSC ERROR: Must call MatXXXSetPreallocation() or MatSetUp() on argument 1 "mat" before MatGetFactorAvailable() [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.7.4, unknown [0]PETSC ERROR: ./ucmsLEP on a arch-linux2-c-debug named node21 by valera Sat Nov 5 16:23:47 2016 [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack --download-mpich --download-hdf5 --download-netcdf --download-hypre --download-metis --download-parmetis --download-superlu_dist --download-cmake --with-cxx-dialect=C++11 [0]PETSC ERROR: #6 PCApply() line 474 in /usr/dataC/home/valera/petsc/src/ksp/pc/interface/precon.c [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Object is in wrong state [0]PETSC ERROR: Must call MatXXXSetPreallocation() or MatSetUp() on argument 1 "mat" before MatGetFactorAvailable() [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.7.4, unknown [0]PETSC ERROR: ./ucmsLEP on a arch-linux2-c-debug named node21 by valera Sat Nov 5 16:23:47 2016 [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack --download-mpich --download-hdf5 --download-netcdf --download-hypre --download-metis --download-parmetis --download-superlu_dist --download-cmake --with-cxx-dialect=C++11 [0]PETSC ERROR: #7 MatGetFactorAvailable() line 4289 in /usr/dataC/home/valera/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: #8 PCGetDefaultType_Private() line 28 in /usr/dataC/home/valera/petsc/src/ksp/pc/interface/precon.c [0]PETSC ERROR: #9 PCSetFromOptions() line 159 in /usr/dataC/home/valera/petsc/src/ksp/pc/interface/pcset.c [0]PETSC ERROR: #10 KSPSetFromOptions() line 400 in /usr/dataC/home/valera/petsc/src/ksp/ksp/interface/itcl.c application called MPI_Abort(comm=0x84000000, 73) - process 0 [cli_0]: aborting job: application called MPI_Abort(comm=0x84000000, 73) - process 0 =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 15931 RUNNING AT node21 = EXIT CODE: 73 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== ~ -------------- next part -------------- An HTML attachment was scrubbed... URL: From leejearl at 126.com Sat Nov 5 20:36:50 2016 From: leejearl at 126.com (leejearl) Date: Sun, 6 Nov 2016 09:36:50 +0800 Subject: [petsc-users] how to output components of a section In-Reply-To: References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> Message-ID: <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> Hi Sander: Thank you for your advices, and it works. But it is only available in th local vector. Is there any methods to reach this purposes in the global vector? Thanks leejearl On 2016?11?05? 19:29, Sander Arens wrote: > You can first obtain an IS with > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMCreateSubDM.html > and with that you can obtain a subvector with > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Vec/VecGetSubVector.html > which you can then view the usual way. > > Thanks, > Sander > > On 5 November 2016 at 12:17, leejearl > wrote: > > Hi, all: > > I meet a problems which I can not overcome. The programe is > like the code in > > "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/examples/tutorials/ex1.c.html > ". > > The code create a section which has three fields: u,v,w. How > can I output the fields u and v without together with w? > > Thanks! > > > leejearl > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mvalera at mail.sdsu.edu Sat Nov 5 20:38:57 2016 From: mvalera at mail.sdsu.edu (Manuel Valera) Date: Sat, 5 Nov 2016 18:38:57 -0700 Subject: [petsc-users] Best way to share variables in fortran ? In-Reply-To: References: Message-ID: Great ! it worked, im carrying out tests, Btw, any of you developers and users are attending SC16 next week ? i will be there as a volunteer and a big group from CSRC-SDSU also, we would like to share some thoughts, Regards and many thanks, Manuel On Fri, Nov 4, 2016 at 8:19 PM, Matthew Knepley wrote: > On Fri, Nov 4, 2016 at 7:37 PM, Manuel Valera > wrote: > >> Hello all, >> >> I'm reviving this old post because we are trying to share the petsc >> objects from outside our iteration routine, this means several levels >> outside the linear solver script where they are created now, >> >> we have tried with fortran modules but right now we have conflicts while >> taking the includes, if we make the #include in the module it conflicts >> with the rest of the routines, so we wanted to ask you guys what other >> option to make the petsc objects available for the entire program we have, >> carrying them as arguments seems maybe too cumbersome, >> > > Use the Fortran modules > > http://www.mcs.anl.gov/petsc/petsc-current/docs/ > manualpages/Sys/UsingFortran.html > > although I would delicately recommend a language with a non-broken scoping > model. > > Matt > > >> Thanks for your help, >> >> Manuel >> >> >> >> On Fri, Sep 23, 2016 at 12:39 PM, Barry Smith wrote: >> >>> >>> I don't know much about modules so can't help, but PETSc variables >>> are just like any other variables and so should behave in the same way. >>> >>> Barry >>> >>> > On Sep 23, 2016, at 2:31 PM, Manuel Valera >>> wrote: >>> > >>> > Ok, i got this: >>> > >>> > RHS loaded, size: 213120 / 213120 >>> > CSRMAt loaded, sizes: 213120 x 213120 >>> > 8.43036175 s >>> > solveP pass: 1 >>> > RHS loaded, size: 213120 / 213120 >>> > [0]PETSC ERROR: MatGetSize() line 6295 in >>> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c Wrong type >>> of object: Parameter # 1 >>> > >>> > Program received signal SIGABRT: Process abort signal. >>> > >>> > Backtrace for this error: >>> > #0 0x7F2A35AEA777 >>> > #1 0x7F2A35AEAD7E >>> > #2 0x7F2A34FC6CAF >>> > #3 0x7F2A34FC6C37 >>> > #4 0x7F2A34FCA027 >>> > #5 0x7F2A35F6F6AA >>> > #6 0x7F2A35F6A2EA >>> > #7 0x7F2A362E2FEF >>> > #8 0x7F2A36326681 >>> > #9 0x799AFF in solvepetsclinear_ at SolvePetscLinear.f90:137 >>> (discriminator 2) >>> > #10 0x798F6A in solvep_rhs_ at SolveP_Rhs.f90:284 >>> > #11 0x80D028 in ucmsmain at ucmsMain.f90:472 >>> > >>> > .-.-.-.-.-.-.-.- >>> > >>> > What is weird for me is why it loads everything as it should for the >>> first timestep of the problem and then it breaks on the second one, >>> shouldnt the matrix be loaded at modules and shared with all subroutines? >>> also, shouldnt the matrix be locked after assembly_final was used ? that >>> matrix call is Ap which is inside LoadPetscMatrix module, and it looks like >>> its changed after the first timestep. >>> > >>> > >>> > On Fri, Sep 23, 2016 at 12:18 PM, Barry Smith >>> wrote: >>> > >>> > Ok, so the problem is not memory corruption. >>> > >>> > > 0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > [0]PETSC ERROR: Invalid argument >>> > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 >>> > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in >>> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >>> > >>> > So it looks like the matrix has not been created yet in this call. >>> You can run with -start_in_debugger noxterm and then type cont in the >>> debugger and it should stop at this error so you can look at the mat object >>> to see what its value is. >>> > >>> > Barry >>> > >>> > >>> > >>> > > On Sep 23, 2016, at 2:07 PM, Manuel Valera >>> wrote: >>> > > >>> > > Barry, that was awesome, all the valgrind error dissappeared after >>> using the mpiexec from petsc folder, the more you know... >>> > > >>> > > Anyway this is my output from valgrind running with those options: >>> > > >>> > > Last Update: 9/23/2016 12: 5:12 >>> > > ucmsSeamount Entering MAIN loop. >>> > > RHS loaded, size: 213120 / 213120 >>> > > CSRMAt loaded, sizes: 213120 x 213120 >>> > > 8.32709217 s >>> > > solveP pass: 1 >>> > > RHS loaded, size: 213120 / 213120 >>> > > CSRMAt loaded, sizes: 213120 x 0 >>> > > [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > [0]PETSC ERROR: Invalid argument >>> > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 >>> > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>> ocumentation/faq.html for trouble shooting. >>> > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >>> > > [0]PETSC ERROR: ./ucmsSeamount >>> >>> >>> ?J? on a >>> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >>> 12:05:03 2016 >>> > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >>> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >>> --download-ml?=1 >>> > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in >>> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >>> > > [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > [0]PETSC ERROR: Invalid argument >>> > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 >>> > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>> ocumentation/faq.html for trouble shooting. >>> > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >>> > > [0]PETSC ERROR: ./ucmsSeamount >>> >>> >>> ?J? on a >>> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >>> 12:05:03 2016 >>> > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >>> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >>> --download-ml?=1 >>> > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c >>> > > [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > [0]PETSC ERROR: Nonconforming object sizes >>> > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not >>> equal resulting vector number of rows 213120 >>> > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>> ocumentation/faq.html for trouble shooting. >>> > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >>> > > [0]PETSC ERROR: ./ucmsSeamount >>> >>> >>> ?J? on a >>> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >>> 12:05:03 2016 >>> > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >>> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >>> --download-ml?=1 >>> > > [0]PETSC ERROR: #3 PCApply() line 474 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c >>> > > [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > [0]PETSC ERROR: Object is in wrong state >>> > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 >>> > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>> ocumentation/faq.html for trouble shooting. >>> > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >>> > > [0]PETSC ERROR: ./ucmsSeamount >>> >>> >>> ?J? on a >>> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >>> 12:05:03 2016 >>> > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >>> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >>> --download-ml?=1 >>> > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in >>> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >>> > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c >>> > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c >>> > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c >>> > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >>> > > [cli_0]: aborting job: >>> > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >>> > > >>> > > ============================================================ >>> ======================= >>> > > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES >>> > > = PID 6490 RUNNING AT valera-HP-xw4600-Workstation >>> > > = EXIT CODE: 73 >>> > > = CLEANING UP REMAINING PROCESSES >>> > > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES >>> > > ============================================================ >>> ======================= >>> > > ==6488== >>> > > ==6488== HEAP SUMMARY: >>> > > ==6488== in use at exit: 131,120 bytes in 2 blocks >>> > > ==6488== total heap usage: 1,224 allocs, 1,222 frees, 249,285 >>> bytes allocated >>> > > ==6488== >>> > > ==6488== LEAK SUMMARY: >>> > > ==6488== definitely lost: 0 bytes in 0 blocks >>> > > ==6488== indirectly lost: 0 bytes in 0 blocks >>> > > ==6488== possibly lost: 0 bytes in 0 blocks >>> > > ==6488== still reachable: 131,120 bytes in 2 blocks >>> > > ==6488== suppressed: 0 bytes in 0 blocks >>> > > ==6488== Rerun with --leak-check=full to see details of leaked memory >>> > > ==6488== >>> > > ==6488== For counts of detected and suppressed errors, rerun with: -v >>> > > ==6488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from >>> 0) >>> > > >>> > > >>> > > On Fri, Sep 23, 2016 at 11:15 AM, Barry Smith >>> wrote: >>> > > >>> > > > On Sep 23, 2016, at 1:09 PM, Manuel Valera >>> wrote: >>> > > > >>> > > > Thanks Barry, for the quick reply, >>> > > > >>> > > > I tried doing that once recently, not for this problem though, but >>> it looks like the model i'm working on isn't optimized at all for memory >>> leaks, and valgrind stopped with thousands of errors before reaching this >>> part of the execution. >>> > > >>> > > Some MPI implementations by default produce many meaningless >>> valgrind messages. So make sure you ./configure PETSc with --download-mpich >>> this version will not produce any meaningless valgrind messages about MPI. >>> > > >>> > > You are not concerned with "memory leaks" in this exercise, only >>> with using uninitialized memory or overwriting memory you should not >>> overwrite. So you want valgrind arguments like -q --tool=memcheck >>> --num-callers=20 --track-origins=yes you do not need --leak-check=yes >>> > > >>> > > So run with valgrind and email use the output and we may have >>> suggestions on the cause. >>> > > >>> > > Barry >>> > > >>> > > >>> > > >>> > > > >>> > > > Is there maybe an alternative approach ? or it would be better to >>> just get the model in better shape already ? >>> > > > >>> > > > Thanks >>> > > > >>> > > > On Fri, Sep 23, 2016 at 10:53 AM, Barry Smith >>> wrote: >>> > > > >>> > > > Run with valgrind to find the exact location of the first memory >>> corruption. http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind >>> > > > >>> > > > > On Sep 23, 2016, at 12:47 PM, Manuel Valera < >>> mvalera at mail.sdsu.edu> wrote: >>> > > > > >>> > > > > Hello all, >>> > > > > >>> > > > > I'm trying to load my laplacian matrix into a fortran module, >>> and i have implemented it and it works for the first iteration of laplacian >>> solver, but when starts the second step the laplacian matrix object becomes >>> corrupts and looks like it loses one of it's dimensions. >>> > > > > >>> > > > > Can you help me understand whats happening? >>> > > > > >>> > > > > The modules are attached, the error i get is the following, i >>> bolded the lines where i detected corruption: >>> > > > > >>> > > > > ucmsSeamount Entering MAIN loop. >>> > > > > RHS loaded, size: 213120 / 213120 >>> > > > > CSRMAt loaded, sizes: 213120 x 213120 >>> > > > > 8.39198399 s >>> > > > > solveP pass: 1 !Iteration number >>> > > > > RHS loaded, size: 213120 / 213120 >>> > > > > [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > > > [0]PETSC ERROR: Invalid argument >>> > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 1 >>> > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>> ocumentation/faq.html for trouble shooting. >>> > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >>> > > > > [0]PETSC ERROR: ./ucmsSeamount >>> >>> >>> ?J? on a >>> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >>> 10:27:21 2016 >>> > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >>> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >>> --download-ml?=1 >>> > > > > [0]PETSC ERROR: #1 MatGetSize() line 6295 in >>> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >>> > > > > CSRMAt loaded, sizes: 213120 x 0 >>> > > > > [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > > > [0]PETSC ERROR: Invalid argument >>> > > > > [0]PETSC ERROR: Wrong type of object: Parameter # 2 >>> > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>> ocumentation/faq.html for trouble shooting. >>> > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >>> > > > > [0]PETSC ERROR: ./ucmsSeamount >>> >>> >>> ?J? on a >>> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >>> 10:27:21 2016 >>> > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >>> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >>> --download-ml?=1 >>> > > > > [0]PETSC ERROR: #2 KSPSetOperators() line 531 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcreate.c >>> > > > > [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > > > [0]PETSC ERROR: Nonconforming object sizes >>> > > > > [0]PETSC ERROR: Preconditioner number of local rows -1 does not >>> equal resulting vector number of rows 213120 >>> > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>> ocumentation/faq.html for trouble shooting. >>> > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >>> > > > > [0]PETSC ERROR: ./ucmsSeamount >>> >>> >>> ?J? on a >>> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >>> 10:27:21 2016 >>> > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >>> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >>> --download-ml?=1 >>> > > > > [0]PETSC ERROR: #3 PCApply() line 474 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c >>> > > > > [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> > > > > [0]PETSC ERROR: Object is in wrong state >>> > > > > [0]PETSC ERROR: Mat object's type is not set: Argument # 1 >>> > > > > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>> ocumentation/faq.html for trouble shooting. >>> > > > > [0]PETSC ERROR: Petsc Release Version 3.7.3, unknown >>> > > > > [0]PETSC ERROR: ./ucmsSeamount >>> >>> >>> ?J? on a >>> arch-linux2-c-debug named valera-HP-xw4600-Workstation by valera Fri Sep 23 >>> 10:27:21 2016 >>> > > > > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ >>> --with-fc=gfortran --download-fblaslapack=1 --download-mpich=1 >>> --download-ml?=1 >>> > > > > [0]PETSC ERROR: #4 MatGetFactorAvailable() line 4286 in >>> /home/valera/v5PETSc/petsc/petsc/src/mat/interface/matrix.c >>> > > > > [0]PETSC ERROR: #5 PCGetDefaultType_Private() line 28 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/precon.c >>> > > > > [0]PETSC ERROR: #6 PCSetFromOptions() line 159 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/pc/interface/pcset.c >>> > > > > [0]PETSC ERROR: #7 KSPSetFromOptions() line 400 in >>> /home/valera/v5PETSc/petsc/petsc/src/ksp/ksp/interface/itcl.c >>> > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >>> > > > > [unset]: aborting job: >>> > > > > application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >>> > > > > >>> > > > > >>> > > > >>> > > > >>> > > >>> > > >>> > >>> > >>> >>> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -------------- next part -------------- An HTML attachment was scrubbed... URL: From fdkong.jd at gmail.com Sat Nov 5 21:35:28 2016 From: fdkong.jd at gmail.com (Fande Kong) Date: Sat, 5 Nov 2016 20:35:28 -0600 Subject: [petsc-users] -pc_asm_type none Message-ID: Hi All, I know what "basic", "restrict" and "interpolate" represent, but have no idea about "none". Anybody knows what does mean when using "-pc_asm_type none"? Regards, Fande Kong, -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Sat Nov 5 23:10:47 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Sat, 5 Nov 2016 23:10:47 -0500 Subject: [petsc-users] -pc_asm_type none In-Reply-To: References: Message-ID: <39CE2BF5-F195-4C18-9BB6-79E9F763C5F4@mcs.anl.gov> > On Nov 5, 2016, at 9:35 PM, Fande Kong wrote: > > Hi All, > > I know what "basic", "restrict" and "interpolate" represent, but have no idea about "none". Anybody knows what does mean when using "-pc_asm_type none"? PC_ASM_NONE - Residuals from ghost points are not used, computed ghost values are $ discarded. $ Not very good. In the P (A_subdomain)^-1 R both the R and the P skip values in the overlap region. Sort of the worst of restrict and interpolate. > > Regards, > > Fande Kong, From bsmith at mcs.anl.gov Sat Nov 5 23:18:28 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Sat, 5 Nov 2016 23:18:28 -0500 Subject: [petsc-users] Error reading binary file In-Reply-To: References: Message-ID: <365E79BD-717C-4D72-BC44-983F5556147F@mcs.anl.gov> Have you destroyed all the previously opened viewers? Unix only allows a limited number of open files at at once. Is it a different "binary file to solver for pressure" at each iteration? If it is the same then just read the file in once and keep the KSP object from the first time and call KSPSolve() for the new iteration, it will be much faster. Barry > On Nov 5, 2016, at 7:35 PM, Manuel Valera wrote: > > Hello all, > > In the model we are working now, we are using a big laplacian matrix written as a binary file that is read in each iteration to solve for pressure, in a particular testcase and always for iteration 1008 we get the following error, any ideas why this would be ? Thanks : > > solveP pass: 1008 > RHS loaded, size: 200000 / 200000 > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > [0]PETSC ERROR: Unable to open file > [0]PETSC ERROR: Cannot open file laplacian.petsc for reading > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.7.4, unknown > [0]PETSC ERROR: ./ucmsLEP on a arch-linux2-c-debug named node21 by valera Sat Nov 5 16:23:47 2016 > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack --download-mpich --download-hdf5 --download-netcdf --download-hypre --download-metis --download-parmetis --download-superlu_dist --download-cmake --with-cxx-dialect=C++11 > [0]PETSC ERROR: #1 PetscViewerFileSetUp_Binary() line 1249 in /usr/dataC/home/valera/petsc/src/sys/classes/viewer/impls/binary/binv.c > [0]PETSC ERROR: #2 PetscViewerSetUp_Binary() line 1387 in /usr/dataC/home/valera/petsc/src/sys/classes/viewer/impls/binary/binv.c > [0]PETSC ERROR: #3 PetscViewerSetUp() line 336 in /usr/dataC/home/valera/petsc/src/sys/classes/viewer/interface/view.c > [0]PETSC ERROR: #4 MatLoad_SeqAIJ() line 4152 in /usr/dataC/home/valera/petsc/src/mat/impls/aij/seq/aij.c > [0]PETSC ERROR: #5 MatLoad() line 1013 in /usr/dataC/home/valera/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > [0]PETSC ERROR: Nonconforming object sizes > [0]PETSC ERROR: Preconditioner number of local rows -1 does not equal resulting vector number of rows 200000 > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.7.4, unknown > [0]PETSC ERROR: ./ucmsLEP on a arch-linux2-c-debug named node21 by valera Sat Nov 5 16:23:47 2016 > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack --download-mpich --download-hdf5 --download-netcdf --download-hypre --download-metis --download-parmetis --download-superlu_dist --download-cmake --with-cxx-dialect=C++11 > [0]PETSC ERROR: #6 PCApply() line 474 in /usr/dataC/home/valera/petsc/src/ksp/pc/interface/precon.c > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > [0]PETSC ERROR: Object is in wrong state > [0]PETSC ERROR: Must call MatXXXSetPreallocation() or MatSetUp() on argument 1 "mat" before MatGetFactorAvailable() > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.7.4, unknown > [0]PETSC ERROR: ./ucmsLEP on a arch-linux2-c-debug named node21 by valera Sat Nov 5 16:23:47 2016 > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack --download-mpich --download-hdf5 --download-netcdf --download-hypre --download-metis --download-parmetis --download-superlu_dist --download-cmake --with-cxx-dialect=C++11 > [0]PETSC ERROR: #6 PCApply() line 474 in /usr/dataC/home/valera/petsc/src/ksp/pc/interface/precon.c > [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > [0]PETSC ERROR: Object is in wrong state > [0]PETSC ERROR: Must call MatXXXSetPreallocation() or MatSetUp() on argument 1 "mat" before MatGetFactorAvailable() > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.7.4, unknown > [0]PETSC ERROR: ./ucmsLEP on a arch-linux2-c-debug named node21 by valera Sat Nov 5 16:23:47 2016 > [0]PETSC ERROR: Configure options --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack --download-mpich --download-hdf5 --download-netcdf --download-hypre --download-metis --download-parmetis --download-superlu_dist --download-cmake --with-cxx-dialect=C++11 > [0]PETSC ERROR: #7 MatGetFactorAvailable() line 4289 in /usr/dataC/home/valera/petsc/src/mat/interface/matrix.c > [0]PETSC ERROR: #8 PCGetDefaultType_Private() line 28 in /usr/dataC/home/valera/petsc/src/ksp/pc/interface/precon.c > [0]PETSC ERROR: #9 PCSetFromOptions() line 159 in /usr/dataC/home/valera/petsc/src/ksp/pc/interface/pcset.c > [0]PETSC ERROR: #10 KSPSetFromOptions() line 400 in /usr/dataC/home/valera/petsc/src/ksp/ksp/interface/itcl.c > application called MPI_Abort(comm=0x84000000, 73) - process 0 > [cli_0]: aborting job: > application called MPI_Abort(comm=0x84000000, 73) - process 0 > > =================================================================================== > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > = PID 15931 RUNNING AT node21 > = EXIT CODE: 73 > = CLEANING UP REMAINING PROCESSES > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > =================================================================================== > ~ From bsmith at mcs.anl.gov Sat Nov 5 23:21:50 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Sat, 5 Nov 2016 23:21:50 -0500 Subject: [petsc-users] how to output components of a section In-Reply-To: <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> Message-ID: <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> > On Nov 5, 2016, at 8:36 PM, leejearl wrote: > > Hi Sander: > Thank you for your advices, and it works. But it is only available in th local vector. This should work on the global vector. Please send the full output of the error messages when used with a global vector. Barry > Is there any methods to reach this purposes in the global vector? > Thanks > leejearl > On 2016?11?05? 19:29, Sander Arens wrote: >> You can first obtain an IS with >> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMCreateSubDM.html >> and with that you can obtain a subvector with >> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Vec/VecGetSubVector.html >> which you can then view the usual way. >> >> Thanks, >> Sander >> >> On 5 November 2016 at 12:17, leejearl wrote: >> Hi, all: >> >> I meet a problems which I can not overcome. The programe is like the code in >> >> "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/examples/tutorials/ex1.c.html". >> >> The code create a section which has three fields: u,v,w. How can I output the fields u and v without together with w? >> >> Thanks! >> >> >> leejearl >> >> >> >> > From fdkong.jd at gmail.com Sat Nov 5 23:47:16 2016 From: fdkong.jd at gmail.com (Fande Kong) Date: Sat, 5 Nov 2016 22:47:16 -0600 Subject: [petsc-users] -pc_asm_type none In-Reply-To: <39CE2BF5-F195-4C18-9BB6-79E9F763C5F4@mcs.anl.gov> References: <39CE2BF5-F195-4C18-9BB6-79E9F763C5F4@mcs.anl.gov> Message-ID: On Sat, Nov 5, 2016 at 10:10 PM, Barry Smith wrote: > > > On Nov 5, 2016, at 9:35 PM, Fande Kong wrote: > > > > Hi All, > > > > I know what "basic", "restrict" and "interpolate" represent, but have no > idea about "none". Anybody knows what does mean when using "-pc_asm_type > none"? > > PC_ASM_NONE - Residuals from ghost points are not used, computed > ghost values are > $ discarded. > $ Not very good. > > In the P (A_subdomain)^-1 R both the R and the P skip values in the > overlap region. Sort of the worst of restrict and interpolate. > Thanks, Barry. Did some experiments, and I observed that "none" works better than "basic" for an incompressible Navier-Stokes defined on a complex domain. Is it normal? I think for PC_ASM_BASIC, we could average the values on the overlap region. Right now, we are just simply adding all values from different processors together for the overlap region. There are some literatures that shows the averaged version works similarly as the restrict/interpolate version. Fande, > > > > > > Regards, > > > > Fande Kong, > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mpovolot at purdue.edu Sun Nov 6 01:03:00 2016 From: mpovolot at purdue.edu (Michael Povolotskyi) Date: Sun, 6 Nov 2016 02:03:00 -0500 Subject: [petsc-users] strange error during configuration Message-ID: <052986c7-1fb4-390e-bf86-e905385a6a56@purdue.edu> Dear Petsc developers, I'm trying to execute ./config/configure.py --with-x=0 --with-hdf5 \ --with-hdf5-include=/usr/include \ --with-hdf5-lib=/usr/lib/libhdf5.so\ --with-scalar-type=real --with-single-library=1\ --with-pic=1 --with-shared-libraries=0 --with-log=0 \ --with-clanguage=C++ --CXXFLAGS=-fopenmp --with-fortran=1 \ --with-debugging=0 --with-cc="mpicc" --with-fc="mpif90" --with-cxx="mpic++" COPTFLAGS="-O3" CXXOPTFLAGS="-O3" FOPTFLAGS="-O3" --download-metis=1 \ --download-parmetis=1 --with-valgrind-dir= /usr/include/valgrind \ --download-mumps=1 --with-fortran-kernels=0 \ --download-superlu_dist=1 \ --with-blas-lapack-lib ="-L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core " \ --with-blacs-lib=/opt/intel/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so \ --with-blacs-include=/opt/intel/mkl/include \ --with-scalapack-lib="-Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core -lpthread -L/opt/intel/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64" \ --with-scalapack-include=/opt/intel/mkl/include and I get a strange error: UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- You set a value for --with-blas-lapack-lib=, but ['1'] cannot be used The log file is attached. Please advise. Thank you, Michael. -------------- next part -------------- Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Sun Nov 6 01:52:04 2016 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-x=0 --with-hdf5 --with-hdf5-include=/usr/include --with-hdf5-lib=/usr/lib/libhdf5.so --with-scalar-type=real --with-single-library=1 --with-pic=1 --with-shared-libraries=0 --with-log=0 --with-clanguage=C++ --CXXFLAGS=-fopenmp --with-fortran=1 --with-debugging=0 --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpic++ COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 --download-metis=1 --download-parmetis=1 --with-valgrind-dir= /usr/include/valgrind --download-mumps=1 --with-fortran-kernels=0 --download-superlu_dist=1 --with-blas-lapack-lib ="-L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core " --with-blacs-lib=/opt/intel/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so --with-blacs-include=/opt/intel/mkl/include --with-scalapack-lib="-Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core -lpthread -L/opt/intel/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64" --with-scalapack-include=/opt/intel/mkl/include Working directory: /home/mpovolot/NEMO5/NEMO/libs/petsc/build-real Machine platform: ('Linux', 'ncnlnx15.ecn.purdue.edu', '4.0.5-200.fc21.x86_64', '#1 SMP Mon Jun 8 16:25:02 UTC 2015', 'x86_64', 'x86_64') Python version: 2.7.8 (default, Sep 24 2015, 18:26:19) [GCC 4.9.2 20150212 (Red Hat 4.9.2-6)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/framework.py:834) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:834) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program ./gdb...not found Checking for program /home/mpovolot/bin/gdb...not found Checking for program /bin/gdb...found Defined make macro "GDB" to "/bin/gdb" Checking for program ./dbx...not found Checking for program /home/mpovolot/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/local/visit/bin/dbx...not found Checking for program /opt/matlab/bin/dbx...not found Checking for program /home/mpovolot/dbx...not found Checking for program ./xdb...not found Checking for program /home/mpovolot/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/local/visit/bin/xdb...not found Checking for program /opt/matlab/bin/xdb...not found Checking for program /home/mpovolot/xdb...not found Checking for program ./dsymutil...not found Checking for program /home/mpovolot/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/local/visit/bin/dsymutil...not found Checking for program /opt/matlab/bin/dsymutil...not found Checking for program /home/mpovolot/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program ./git...not found Checking for program /home/mpovolot/bin/git...not found Checking for program /bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.1.0 ================================================================================ TEST configureMercurial from config.sourceControl(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program ./hg...not found Checking for program /home/mpovolot/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/local/visit/bin/hg...not found Checking for program /opt/matlab/bin/hg...not found Checking for program /home/mpovolot/hg...not found ================================================================================ TEST configureCLanguage from PETSc.options.languages(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is Cxx Defined "CLANGUAGE_CXX" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 7 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jun, 05, 2016" #define PETSC_VERSION_GIT "v3.7.2" #define PETSC_VERSION_DATE_GIT "2016-06-05 12:07:54 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation ================================================================================ TEST configureArchitecture from PETSc.options.arch(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/arch.py:25) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""linux"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/installDir.py:74) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:74) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/installDir.py:67) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:67) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/installDir.py:51) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:51) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/linux/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/installDir.py:87) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:87) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1592) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1592) **** printenv **** SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass LOADEDMODULES= GROUP=mpovolot REMOTEHOST=c-98-223-96-89.hsd1.in.comcast.net HOSTTYPE=x86_64-linux LESSOPEN=||/usr/bin/lesspipe.sh %s SSH_CLIENT=98.223.96.89 50712 22 SELINUX_USE_CURRENT_RANGE= LOGNAME=mpovolot USER=mpovolot PATH=./:/home/mpovolot/bin/:/bin/:/usr/bin/:/usr/local/bin/:/usr/local/visit/bin/:/opt/matlab/bin/ QTDIR=/usr/lib64/qt-3.3 MAKEFLAGS= SSH_CONNECTION=98.223.96.89 50712 128.46.94.46 22 LANG=en_US.UTF-8 QTLIB=/usr/lib64/qt-3.3/lib TERM=xterm SHELL=/usr/bin/csh QTINC=/usr/lib64/qt-3.3/include PWD=/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real PETSC_DIR=/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real EDITOR=joe OSTYPE=linux MFLAGS= MODULESHOME=/usr/share/Modules VENDOR=unknown XDG_RUNTIME_DIR=/run/user/1000 HOME=/home/mpovolot SHLVL=2 HOST=ncnlnx15.ecn.purdue.edu QT_GRAPHICSSYSTEM_CHECKED=1 XDG_SESSION_ID=3087 _=./config/configure.py MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles:/usr/share/modulefiles KDEDIRS=/usr MACHTYPE=x86_64 SSH_TTY=/dev/pts/11 OLDPWD=/home/mpovolot/NEMO5/NEMO/libs/petsc HOSTNAME=ncnlnx15.ecn.purdue.edu SELINUX_ROLE_REQUESTED= SELINUX_LEVEL_REQUESTED= MAKELEVEL=1 PETSC_ARCH=linux MAIL=/var/spool/mail/mpovolot 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================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1599) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1599) =============================================================================== ***** WARNING: MAKEFLAGS (set to ) found in environment variables - ignoring use ./configure MAKEFLAGS=$MAKEFLAGS if you really want to use that value ****** =============================================================================== ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1629) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1629) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1564) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1564) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1583) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1583) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:417) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:417) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:427) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:427) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to -fopenmp Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:553) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:553) Locate a functional C compiler Checking for program ./mpicc...not found Checking for program /home/mpovolot/bin/mpicc...not found Checking for program /bin/mpicc...not found Checking for program /usr/bin/mpicc...not found Checking for program /usr/local/bin/mpicc...found Defined make macro "CC" to "mpicc" Pushing language C All intermediate test results are stored in /tmp/petsc-F9l5hH All intermediate test results are stored in /tmp/petsc-F9l5hH/config.setCompilers Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Testing executable /tmp/petsc-F9l5hH/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:586) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:586) Locate a functional C preprocessor Checking for program ./mpicc...not found Checking for program /home/mpovolot/bin/mpicc...not found Checking for program /bin/mpicc...not found Checking for program /usr/bin/mpicc...not found Checking for program /usr/local/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Pushing language C Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 513 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 578 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 711 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 774 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 811 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 898 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 950 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 4 # 955 "/usr/include/stdlib.h" 2 3 4 # 967 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:627) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:627) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:667) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:667) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:779) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:779) Locate a functional Cxx compiler Checking for program ./mpic++...not found Checking for program /home/mpovolot/bin/mpic++...not found Checking for program /bin/mpic++...not found Checking for program /usr/bin/mpic++...not found Checking for program /usr/local/bin/mpic++...found Defined make macro "CXX" to "mpic++" Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Testing executable /tmp/petsc-F9l5hH/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:817) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:817) Locate a functional Cxx preprocessor Checking for program ./mpic++...not found Checking for program /home/mpovolot/bin/mpic++...not found Checking for program /bin/mpic++...not found Checking for program /usr/bin/mpic++...not found Checking for program /usr/local/bin/mpic++...found Defined make macro "CXXCPP" to "mpic++ -E" Pushing language Cxx Executing: mpic++ -E -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.cc" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-F9l5hH/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-F9l5hH/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.9.2/cstdlib" 1 3 # 39 "/usr/include/c++/4.9.2/cstdlib" 3 # 40 "/usr/include/c++/4.9.2/cstdlib" 3 # 1 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/c++config.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 4 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/c++config.h" 2 3 # 1865 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 2109 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/c++config.h" 3 # 1 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/os_defines.h" 1 3 # 39 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 40 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/os_defines.h" 2 3 # 2110 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/cpu_defines.h" 1 3 # 2113 "/usr/include/c++/4.9.2/x86_64-redhat-linux/bits/c++config.h" 2 3 # 42 "/usr/include/c++/4.9.2/cstdlib" 2 3 # 72 "/usr/include/c++/4.9.2/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 32 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); # 235 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 236 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern unsigned long int strtoul_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern long long int strtoll_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern unsigned long long int strtoull_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern double strtod_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern float strtof_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern long double strtold_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 extern "C" { typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 # 54 "/usr/include/sys/select.h" 3 4 typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 extern "C" { # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 } # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 } # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/usr/include/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 } # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *secure_getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 629 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 651 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 673 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 683 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 693 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 705 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (const char *__command) ; extern char *canonicalize_file_name (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (const void *, const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (const void *, const void *, void *); extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 811 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) throw (); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw (); extern int wctomb (char *__s, wchar_t __wchar) throw (); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 898 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 4 # 955 "/usr/include/stdlib.h" 2 3 4 # 967 "/usr/include/stdlib.h" 3 4 } # 73 "/usr/include/c++/4.9.2/cstdlib" 2 3 # 114 "/usr/include/c++/4.9.2/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } } # 196 "/usr/include/c++/4.9.2/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 228 "/usr/include/c++/4.9.2/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-F9l5hH/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:934) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:934) Locate a functional Fortran compiler Checking for program ./mpif90...not found Checking for program /home/mpovolot/bin/mpif90...not found Checking for program /bin/mpif90...not found Checking for program /usr/bin/mpif90...not found Checking for program /usr/local/bin/mpif90...found Defined make macro "FC" to "mpif90" Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Testing executable /tmp/petsc-F9l5hH/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:955) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:955) Make sure fortran comment "!" works Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1072) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1072) ================================================================================ TEST checkArchiver from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1171) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1171) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar version 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program ./ar...not found Checking for program /home/mpovolot/bin/ar...not found Checking for program /bin/ar...found Defined make macro "AR" to "/bin/ar" Checking for program ./ranlib...not found Checking for program /home/mpovolot/bin/ranlib...not found Checking for program /bin/ranlib...found Defined make macro "RANLIB" to "/bin/ranlib -c" Executing: /bin/ar cr /tmp/petsc-F9l5hH/config.setCompilers/libconf1.a /tmp/petsc-F9l5hH/config.setCompilers/conf1.o Executing: /bin/ranlib -c /tmp/petsc-F9l5hH/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.24 Copyright 2013 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program ./ar...not found Checking for program /home/mpovolot/bin/ar...not found Checking for program /bin/ar...found Defined make macro "AR" to "/bin/ar" Checking for program ./ranlib...not found Checking for program /home/mpovolot/bin/ranlib...not found Checking for program /bin/ranlib...found Defined make macro "RANLIB" to "/bin/ranlib" Executing: /bin/ar cr /tmp/petsc-F9l5hH/config.setCompilers/libconf1.a /tmp/petsc-F9l5hH/config.setCompilers/conf1.o Executing: /bin/ranlib /tmp/petsc-F9l5hH/config.setCompilers/libconf1.a Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/tmp/petsc-F9l5hH/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1283) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1283) Check that the linker can produce shared libraries Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /bin/ar using flags [] Checking for program /bin/ar...found Defined make macro "LD_SHARED" to "/bin/ar" Trying C compiler flag Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /bin/ar cr /tmp/petsc-F9l5hH/config.setCompilers/libconftest.a /tmp/petsc-F9l5hH/config.setCompilers/conftest.o ; /bin/ranlib /tmp/petsc-F9l5hH/config.setCompilers/libconftest.a Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/tmp/petsc-F9l5hH/config.setCompilers -lconftest Using shared linker /bin/ar with flags [] and library extension a Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1031) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1031) Determine the PIC option for each compiler Pushing language C Trying C compiler flag Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void foo(void); void bar(void){foo();} Pushing language C Popping language C Executing: /bin/ar cr /tmp/petsc-F9l5hH/config.setCompilers/libconftest.a /tmp/petsc-F9l5hH/config.setCompilers/conftest.o ; /bin/ranlib /tmp/petsc-F9l5hH/config.setCompilers/libconftest.a Accepted C compiler flag Popping language C Pushing language Cxx Trying Cxx compiler flag Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" void foo(void); void bar(void){foo();} Pushing language C Pushing language C Popping language C Popping language C Executing: /bin/ar cr /tmp/petsc-F9l5hH/config.setCompilers/libconftest.a /tmp/petsc-F9l5hH/config.setCompilers/conftest.o ; /bin/ranlib /tmp/petsc-F9l5hH/config.setCompilers/libconftest.a Accepted Cxx compiler flag Popping language Cxx Pushing language FC Trying FC compiler flag Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: function foo(a) real:: a, bar foo = bar(a) end Pushing language C Pushing language C Popping language C Popping language C Executing: /bin/ar cr /tmp/petsc-F9l5hH/config.setCompilers/libconftest.a /tmp/petsc-F9l5hH/config.setCompilers/conftest.o ; /bin/ranlib /tmp/petsc-F9l5hH/config.setCompilers/libconftest.a Accepted FC compiler flag Popping language FC ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1372) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1372) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: mpicc -V Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wl,-rpath,/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wl,-rpath,/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real -fopenmp /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: mpicc -V Trying FC linker flag -Wl,-rpath, Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wl,-rpath,/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real /tmp/petsc-F9l5hH/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1407) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1407) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1456) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1456) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-F9l5hH/config.headers Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 22 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 28 "/usr/include/dlfcn.h" 2 3 4 # 52 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 82 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 188 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-F9l5hH/config.libraries Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.libraries /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest /tmp/petsc-F9l5hH/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker /bin/ar using flags [] Checking for program /bin/ar...found Defined make macro "DYNAMICLINKER" to "/bin/ar" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /bin/ar -o /tmp/petsc-F9l5hH/config.setCompilers/libconftest.so /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: /bin/ar: creating /tmp/petsc-F9l5hH/config.setCompilers/libconftest.so Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ?printf? printf("Could not load symbol\n"); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ?printf? printf("Invalid return from foo()\n"); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ?printf? printf("Could not close library\n"); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-F9l5hH/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -ldl Using dynamic linker /bin/ar with flags [] and library extension so ================================================================================ TEST output from config.setCompilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/setCompilers.py:1508) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1508) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with " " Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpic++" Substituting "CXX_CXXFLAGS" with " " Substituting "CXXFLAGS" with "-fopenmp" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "mpic++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "mpif90" Substituting "FFLAGS" with " " Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined make macro "PETSC_INDEX_SIZE" to "32" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "MPICC_SHOW" to "gcc -I/usr/local/include -L/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -lmpi" Trying C compiler flag -Wall Trying C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fvisibility=hidden Trying C compiler flag -O3 Ignoring default options which were overridden using --CXXFLAGS -fopenmp Trying Cxx compiler flag -O3 Defined make macro "MPIFC_SHOW" to "gfortran -I/usr/local/include -I/usr/local/include -L/usr/local/lib -lmpifort -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -lmpi" Trying FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -O3 Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -Wall /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O3 Popping language C Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O3 Popping language Cxx Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wall Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -O3 Popping language FC Executing: mpicc --version stdout: gcc (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Copyright (C) 2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: mpicc gcc (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Executing: mpicc -show stdout: gcc -I/usr/local/include -L/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -lmpi Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: mpic++ --version stdout: g++ (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Copyright (C) 2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: mpic++ g++ (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Executing: mpif90 --version stdout: GNU Fortran (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Copyright (C) 2014 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: mpif90 GNU Fortran (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Executing: mpif90 -show stdout: gfortran -I/usr/local/include -I/usr/local/include -L/usr/local/lib -lmpifort -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -lmpi Executing: gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gfortran --version stdout: GNU Fortran (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Copyright (C) 2014 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Copyright (C) 2014 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (GCC) 4.9.2 20150212 (Red Hat 4.9.2-6) Copyright (C) 2014 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING ================================================================================ TEST configureDebugging from PETSc.options.debugging(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== Executing: mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: mpicc -V Pushing language C All intermediate test results are stored in /tmp/petsc-F9l5hH/config.compilers Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.compilers/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.compilers/conftest.c:5:18: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?x? float * restrict x;; ^ /tmp/petsc-F9l5hH/config.compilers/conftest.c:5:18: error: ?x? undeclared (first use in this function) /tmp/petsc-F9l5hH/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.compilers/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.compilers/conftest.c:5:23: warning: unused variable ?x? [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:317) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:317) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:328) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:328) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:168) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:168) Determines the libraries needed to link with C Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -ldl stdout: mpicc for MPICH version 3.2 Possible ERROR while running linker: stdout: mpicc for MPICH version 3.2stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.9.2 20150212 (Red Hat 4.9.2-6) (GCC) COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-F9l5hH/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fvisibility=hidden' '-O3' '-I' '/usr/local/include' '-L/usr/local/lib' '-mtune=generic' '-march=x86-64' /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 -plugin /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper -plugin-opt=-fresolution=/tmp/cc4dMD6n.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-F9l5hH/config.compilers/conftest /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../.. /tmp/petsc-F9l5hH/config.compilers/conftest.o -ldl -rpath /usr/local/lib --enable-new-dtags -lmpi -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.2 compilers: Unknown arg 3.2 compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gcc compilers: Unknown arg COLLECT_GCC=gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-redhat-linux compilers: Unknown arg x86_64-redhat-linux compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --with-bugurl=http://bugzilla.redhat.com/bugzilla compilers: Unknown arg --with-bugurl=http://bugzilla.redhat.com/bugzilla compilers: Checking arg --enable-bootstrap compilers: Unknown arg --enable-bootstrap compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg --disable-libunwind-exceptions compilers: Unknown arg --disable-libunwind-exceptions compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-linker-hash-style=gnu compilers: Unknown arg --with-linker-hash-style=gnu compilers: Checking arg --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto compilers: Unknown arg --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-initfini-array compilers: Unknown arg --enable-initfini-array compilers: Checking arg --disable-libgcj compilers: Unknown arg --disable-libgcj compilers: Checking arg --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install compilers: Unknown arg --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install compilers: Checking arg --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install compilers: Unknown arg --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install compilers: Checking arg --enable-gnu-indirect-function compilers: Unknown arg --enable-gnu-indirect-function compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --with-arch_32=i686 compilers: Unknown arg --with-arch_32=i686 compilers: Checking arg --build=x86_64-redhat-linux compilers: Unknown arg --build=x86_64-redhat-linux compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.9.2 compilers: Unknown arg 4.9.2 compilers: Checking arg 20150212 compilers: Unknown arg 20150212 compilers: Checking arg (Red compilers: Unknown arg (Red compilers: Checking arg Hat compilers: Unknown arg Hat compilers: Checking arg 4.9.2-6) compilers: Unknown arg 4.9.2-6) compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ compilers: Unknown arg COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 compilers: Unknown arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so compilers: Unknown arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/cc4dMD6n.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/cc4dMD6n.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-F9l5hH/config.compilers/conftest compilers: Unknown arg /tmp/petsc-F9l5hH/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o compilers: Checking arg -L/usr/local/lib compilers: Found library directory: -L/usr/local/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Found library directory: -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../.. compilers: Checking arg /tmp/petsc-F9l5hH/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-F9l5hH/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/lib compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Found library : -lmpi compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o compilers: Libraries needed to link C code with another linker: ['-L/usr/local/lib', '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2', '-ldl', '-Wl,-rpath,/usr/local/lib', '-lmpi', '-lgcc_s'] compilers: Check that C libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1359) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1359) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 -MMD -MP /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -fopenmp -O3 -MMD -MP /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -MMD -MP /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Popping language FC ================================================================================ TEST checkC99Flag from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1405) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1405) Check for -std=c99 or equivalent flag Accepted C99 compile flag: -std=c99 Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:11:5: error: ?for? loop initial declarations are only allowed in C99 or C11 mode for (int i=0; i<2; i++){ ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:11:5: note: use option -std=c99, -std=gnu99, -std=c11 or -std=gnu11 to compile your code /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-F9l5hH/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:11:5: error: ?for? loop initial declarations are only allowed in C99 or C11 mode for (int i=0; i<2; i++){ ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:11:5: note: use option -std=c99, -std=gnu99, -std=c11 or -std=gnu11 to compile your code /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] float x[2],y; ^ PETSc Error: No output file produced Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 -std=c99 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Popping language C Executing: mpic++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: mpicc -V Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.compilers/conftest.cc: In function ?int main()?: /tmp/petsc-F9l5hH/config.compilers/conftest.cc:5:18: error: expected initializer before ?x? float * restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:368) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:368) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:341) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:341) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:426) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:426) Determines the libraries needed to link with C++ Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.compilers/conftest -v -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl stdout: mpicxx for MPICH version 3.2 Possible ERROR while running linker: stdout: mpicxx for MPICH version 3.2stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.9.2 20150212 (Red Hat 4.9.2-6) (GCC) COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ Reading specs from /usr/lib/gcc/x86_64-redhat-linux/4.9.2/libgomp.spec COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-F9l5hH/config.compilers/conftest' '-v' '-fopenmp' '-O3' '-L/usr/local/lib' '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2' '-I' '/usr/local/include' '-L/usr/local/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-pthread' /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 -plugin /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper -plugin-opt=-fresolution=/tmp/cc89tjJV.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lpthread -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-F9l5hH/config.compilers/conftest /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../.. /tmp/petsc-F9l5hH/config.compilers/conftest.o -ldl -rpath /usr/local/lib -lmpi -lgcc_s -ldl -lmpicxx -rpath /usr/local/lib --enable-new-dtags -lmpi -lstdc++ -lm -lgomp -lgcc_s -lgcc -lpthread -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o Popping language Cxx compilers: Checking arg mpicxx compilers: Unknown arg mpicxx compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.2 compilers: Unknown arg 3.2 compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=g++ compilers: Unknown arg COLLECT_GCC=g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-redhat-linux compilers: Unknown arg x86_64-redhat-linux compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --with-bugurl=http://bugzilla.redhat.com/bugzilla compilers: Unknown arg --with-bugurl=http://bugzilla.redhat.com/bugzilla compilers: Checking arg --enable-bootstrap compilers: Unknown arg --enable-bootstrap compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg --disable-libunwind-exceptions compilers: Unknown arg --disable-libunwind-exceptions compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-linker-hash-style=gnu compilers: Unknown arg --with-linker-hash-style=gnu compilers: Checking arg --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto compilers: Unknown arg --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-initfini-array compilers: Unknown arg --enable-initfini-array compilers: Checking arg --disable-libgcj compilers: Unknown arg --disable-libgcj compilers: Checking arg --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install compilers: Unknown arg --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install compilers: Checking arg --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install compilers: Unknown arg --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install compilers: Checking arg --enable-gnu-indirect-function compilers: Unknown arg --enable-gnu-indirect-function compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --with-arch_32=i686 compilers: Unknown arg --with-arch_32=i686 compilers: Checking arg --build=x86_64-redhat-linux compilers: Unknown arg --build=x86_64-redhat-linux compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.9.2 compilers: Unknown arg 4.9.2 compilers: Checking arg 20150212 compilers: Unknown arg 20150212 compilers: Checking arg (Red compilers: Unknown arg (Red compilers: Checking arg Hat compilers: Unknown arg Hat compilers: Checking arg 4.9.2-6) compilers: Unknown arg 4.9.2-6) compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ compilers: Unknown arg COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/libgomp.spec compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/libgomp.spec compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 compilers: Unknown arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so compilers: Unknown arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/cc89tjJV.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/cc89tjJV.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lpthread compilers: Unknown arg -plugin-opt=-pass-through=-lpthread compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-F9l5hH/config.compilers/conftest compilers: Unknown arg /tmp/petsc-F9l5hH/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o compilers: Checking arg -L/usr/local/lib compilers: Found library directory: -L/usr/local/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Found library directory: -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Checking arg -L/usr/local/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../.. compilers: Checking arg /tmp/petsc-F9l5hH/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-F9l5hH/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/lib compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lmpicxx compilers: Found library: -lmpicxx compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lgomp compilers: Found library: -lgomp compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-L/usr/local/lib', '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2', '-Wl,-rpath,/usr/local/lib', '-lmpicxx', '-lstdc++', '-lgomp', '-lpthread'] compilers: Check that Cxx libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -Wl,-rpath,/usr/local/lib -lmpicxx -lstdc++ -lgomp -lpthread -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -Wl,-rpath,/usr/local/lib -lmpicxx -lstdc++ -lgomp -lpthread -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -Wl,-rpath,/usr/local/lib -lmpicxx -lstdc++ -lgomp -lpthread -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -Wl,-rpath,/usr/local/lib -lmpicxx -lstdc++ -lgomp -lpthread -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -Wl,-rpath,/usr/local/lib -lmpicxx -lstdc++ -lgomp -lpthread -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -Wl,-rpath,/usr/local/lib -lmpicxx -lstdc++ -lgomp -lpthread -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:383) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:383) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/include/c++/4.9.2/random:35:0, from /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:4: /usr/include/c++/4.9.2/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:5:32: error: ?constexpr? does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:5:32: note: C++11 ?constexpr? only available with -std=c++11 or -std=gnu++11 /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc: In function ?int main()?: /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:10:11: error: ?random_device? is not a member of ?std? std::random_device rd; ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:11:11: error: ?mt19937? is not a member of ?std? std::mt19937 mt(rd()); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:12:11: error: ?normal_distribution? is not a member of ?std? std::normal_distribution dist(0,1); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ?double? std::normal_distribution dist(0,1); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:13:33: error: ?mt? was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:13:35: error: ?dist? was not declared in this scope const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.9.2/random:35:0, from /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:4: /usr/include/c++/4.9.2/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:5:32: error: ?constexpr? does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:5:32: note: C++11 ?constexpr? only available with -std=c++11 or -std=gnu++11 /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc: In function ?int main()?: /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:10:11: error: ?random_device? is not a member of ?std? std::random_device rd; ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:11:11: error: ?mt19937? is not a member of ?std? std::mt19937 mt(rd()); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:12:11: error: ?normal_distribution? is not a member of ?std? std::normal_distribution dist(0,1); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ?double? std::normal_distribution dist(0,1); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:13:33: error: ?mt? was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc:13:35: error: ?dist? was not declared in this scope const double x = dist(mt); ^ PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:589) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:589) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.compilers/conftest.F:2.21: real*8 variable 1 Warning: Unused variable 'variable' declared at (1) Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:648) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:648) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o /tmp/petsc-F9l5hH/config.compilers/confc.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:685) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:685) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o /tmp/petsc-F9l5hH/config.compilers/confc.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.compilers/conftest.o: In function `main': conftest.F:(.text.startup+0x1b): undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:695) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:695) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:719) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:719) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -DTesting /tmp/petsc-F9l5hH/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC ================================================================================ TEST checkFortranLibraries from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:739) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:739) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: mpif90 -V Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl stdout: mpifort for MPICH version 3.2 Possible ERROR while running linker: stdout: mpifort for MPICH version 3.2stderr: Driving: gfortran -o /tmp/petsc-F9l5hH/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -I/usr/local/include -I/usr/local/include -L/usr/local/lib -lmpifort -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -lmpi -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.9.2 20150212 (Red Hat 4.9.2-6) (GCC) Reading specs from /usr/lib/gcc/x86_64-redhat-linux/4.9.2/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-F9l5hH/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-L/usr/local/lib' '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2' '-I' '/usr/local/include' '-I' '/usr/local/include' '-L/usr/local/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-F9l5hH/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-L/usr/local/lib' '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2' '-I' '/usr/local/include' '-I' '/usr/local/include' '-L/usr/local/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 -plugin /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper -plugin-opt=-fresolution=/tmp/ccTUJmlT.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-F9l5hH/config.compilers/conftest /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../.. /tmp/petsc-F9l5hH/config.compilers/conftest.o -ldl -rpath /usr/local/lib -lmpi -lgcc_s -ldl -lmpifort -rpath /usr/local/lib --enable-new-dtags -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o Popping language FC compilers: Checking arg mpifort compilers: Unknown arg mpifort compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.2 compilers: Unknown arg 3.2 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-F9l5hH/config.compilers/conftest compilers: Unknown arg /tmp/petsc-F9l5hH/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -O3 compilers: Unknown arg -O3 compilers: Checking arg /tmp/petsc-F9l5hH/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-F9l5hH/config.compilers/conftest.o compilers: Checking arg -L/usr/local/lib compilers: Found library directory: -L/usr/local/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Found library directory: -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/usr/local/lib compilers: Unknown arg -Wl,-rpath,/usr/local/lib compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -I/usr/local/include compilers: Found include directory: /usr/local/include compilers: Checking arg -I/usr/local/include compilers: Found include directory: /usr/local/include compilers: Checking arg -L/usr/local/lib compilers: Already in lflags so skipping: -L/usr/local/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -Wl,-rpath compilers: Unknown arg -Wl,-rpath compilers: Checking arg -Wl,/usr/local/lib compilers: Unknown arg -Wl,/usr/local/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-redhat-linux compilers: Unknown arg x86_64-redhat-linux compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --with-bugurl=http://bugzilla.redhat.com/bugzilla compilers: Unknown arg --with-bugurl=http://bugzilla.redhat.com/bugzilla compilers: Checking arg --enable-bootstrap compilers: Unknown arg --enable-bootstrap compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg --disable-libunwind-exceptions compilers: Unknown arg --disable-libunwind-exceptions compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-linker-hash-style=gnu compilers: Unknown arg --with-linker-hash-style=gnu compilers: Checking arg --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto compilers: Unknown arg --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-initfini-array compilers: Unknown arg --enable-initfini-array compilers: Checking arg --disable-libgcj compilers: Unknown arg --disable-libgcj compilers: Checking arg --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install compilers: Unknown arg --with-isl=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/isl-install compilers: Checking arg --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install compilers: Unknown arg --with-cloog=/builddir/build/BUILD/gcc-4.9.2-20150212/obj-x86_64-redhat-linux/cloog-install compilers: Checking arg --enable-gnu-indirect-function compilers: Unknown arg --enable-gnu-indirect-function compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --with-arch_32=i686 compilers: Unknown arg --with-arch_32=i686 compilers: Checking arg --build=x86_64-redhat-linux compilers: Unknown arg --build=x86_64-redhat-linux compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.9.2 compilers: Unknown arg 4.9.2 compilers: Checking arg 20150212 compilers: Unknown arg 20150212 compilers: Checking arg (Red compilers: Unknown arg (Red compilers: Checking arg Hat compilers: Unknown arg Hat compilers: Checking arg 4.9.2-6) compilers: Unknown arg 4.9.2-6) compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ compilers: Skipping arg COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.9.2/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 compilers: Unknown arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so compilers: Unknown arg /usr/libexec/gcc/x86_64-redhat-linux/4.9.2/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/ccTUJmlT.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/ccTUJmlT.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lquadmath compilers: Unknown arg -plugin-opt=-pass-through=-lquadmath compilers: Checking arg -plugin-opt=-pass-through=-lm compilers: Unknown arg -plugin-opt=-pass-through=-lm compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-F9l5hH/config.compilers/conftest compilers: Unknown arg /tmp/petsc-F9l5hH/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtbegin.o compilers: Checking arg -L/usr/local/lib compilers: Already in lflags so skipping: -L/usr/local/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Checking arg -L/usr/local/lib compilers: Already in lflags so skipping: -L/usr/local/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../.. compilers: Checking arg /tmp/petsc-F9l5hH/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-F9l5hH/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/lib compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-L/usr/local/lib', '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/usr/local/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX compilers: Fortran libraries can be used from C++ Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpic++ -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpic++ -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpic++ -o /tmp/petsc-F9l5hH/config.setCompilers/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.setCompilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Executing: /tmp/petsc-F9l5hH/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1093) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1093) Check that Fortran can be linked against C++ Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fopenmp -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o /tmp/petsc-F9l5hH/config.compilers/cxxobj.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s /tmp/petsc-F9l5hH/config.compilers/confc.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1128) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1128) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1141) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1141) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.compilers/conftest.F: In function ?main?: /tmp/petsc-F9l5hH/config.compilers/conftest.F:9:0: warning: ?carray.dim[0].lbound? may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-F9l5hH/config.compilers/conftest.F:4:0: note: ?carray.dim[0].lbound? was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ /tmp/petsc-F9l5hH/config.compilers/conftest.F:9:0: warning: ?carray.dim[0].stride? may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-F9l5hH/config.compilers/conftest.F:4:0: note: ?carray.dim[0].stride? was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ /tmp/petsc-F9l5hH/config.compilers/conftest.F:9:0: warning: ?carray.offset? may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-F9l5hH/config.compilers/conftest.F:4:0: note: ?carray.offset? was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1161) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1161) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o /tmp/petsc-F9l5hH/config.compilers/fooobj.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.compilers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.compilers/conftest Executing: /tmp/petsc-F9l5hH/config.compilers/conftest stdout: arrays [0x7ffdba8e89a0 0x7ffdba8e89a0 0x7ffdba8e89a0] arrays [0x7ffdba8e8900 0x7ffdba8e8950 0x7ffdba8e8900] pointers do not match! [0x7efcca768a40 0x7efccacbb520] [0x7efccbc99b40] ERROR while running executable: Could not execute "/tmp/petsc-F9l5hH/config.compilers/conftest": arrays [0x7ffdba8e89a0 0x7ffdba8e89a0 0x7ffdba8e89a0] arrays [0x7ffdba8e8900 0x7ffdba8e8950 0x7ffdba8e8900] pointers do not match! [0x7efcca768a40 0x7efccacbb520] [0x7efccbc99b40] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1248) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1248) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.compilers/conftest -I/tmp/petsc-F9l5hH/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.o /tmp/petsc-F9l5hH/config.compilers/configtest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1314) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1314) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -module /tmp/petsc-F9l5hH/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ?-module? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -module:/tmp/petsc-F9l5hH/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ?-module:/tmp/petsc-F9l5hH/config.compilers/confdir? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -fmod=/tmp/petsc-F9l5hH/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ?-fmod=/tmp/petsc-F9l5hH/config.compilers/confdir? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.compilers/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -J/tmp/petsc-F9l5hH/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/compilers.py:1472) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1472) ================================================================================ TEST configureClosure from config.utilities.closure(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /tmp/petsc-F9l5hH/config.utilities.closure Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.closure/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.utilities.closure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.utilities.closure/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.utilities.closure/conftest.c:6:6: error: expected identifier or ?(? before ?^? token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.options.fortranCPP(config/PETSc/options/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.headers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 # 44 "/usr/include/string.h" 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 96 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 127 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 164 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 341 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 396 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 426 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 444 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 488 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 516 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 533 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 556 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 643 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 513 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 578 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 711 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 774 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 811 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 898 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 950 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 4 # 955 "/usr/include/stdlib.h" 2 3 4 # 967 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.headers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.headers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.headers/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.headers/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.headers/conftest Executing: /tmp/petsc-F9l5hH/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 5 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/stat.h" 1 3 4 # 36 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 37 "/usr/include/sys/stat.h" 2 3 4 # 102 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/bits/stat.h" 1 3 4 # 46 "/usr/include/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 4 __syscall_slong_t __glibc_reserved[3]; # 115 "/usr/include/bits/stat.h" 3 4 }; # 105 "/usr/include/sys/stat.h" 2 3 4 # 208 "/usr/include/sys/stat.h" 3 4 extern int stat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 237 "/usr/include/sys/stat.h" 3 4 extern int fstatat (int __fd, const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 262 "/usr/include/sys/stat.h" 3 4 extern int lstat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 283 "/usr/include/sys/stat.h" 3 4 extern int chmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int fchmodat (int __fd, const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__ , __leaf__)); # 320 "/usr/include/sys/stat.h" 3 4 extern int mkdir (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mknod (const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, const char *__path, const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, const struct timespec __times[2]) __attribute__ ((__nothrow__ , __leaf__)); # 398 "/usr/include/sys/stat.h" 3 4 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))); # 441 "/usr/include/sys/stat.h" 3 4 extern int __xmknod (int __ver, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 5))); # 533 "/usr/include/sys/stat.h" 3 4 # 6 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.headers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 21 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 26 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 28 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 30 "/usr/include/sys/time.h" 2 3 4 # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 71 "/usr/include/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/sys/time.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.headers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 26 "/usr/include/math.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/huge_val.h" 1 3 4 # 33 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/huge_valf.h" 1 3 4 # 35 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/huge_vall.h" 1 3 4 # 36 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/inf.h" 1 3 4 # 39 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/nan.h" 1 3 4 # 42 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/mathdef.h" 1 3 4 # 28 "/usr/include/bits/mathdef.h" 3 4 typedef float float_t; typedef double double_t; # 46 "/usr/include/math.h" 2 3 4 # 69 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/bits/mathcalls.h" 3 4 extern double acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/bits/mathcalls.h" 3 4 extern double acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/bits/mathcalls.h" 3 4 extern double expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); # 371 "/usr/include/bits/mathcalls.h" 3 4 extern double scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/math.h" 2 3 4 # 88 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/bits/mathcalls.h" 3 4 extern float acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/bits/mathcalls.h" 3 4 extern float acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/bits/mathcalls.h" 3 4 extern float expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); # 371 "/usr/include/bits/mathcalls.h" 3 4 extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); # 89 "/usr/include/math.h" 2 3 4 # 132 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/bits/mathcalls.h" 3 4 extern long double acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/bits/mathcalls.h" 3 4 extern long double acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/bits/mathcalls.h" 3 4 extern long double expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); # 371 "/usr/include/bits/mathcalls.h" 3 4 extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); # 133 "/usr/include/math.h" 2 3 4 # 148 "/usr/include/math.h" 3 4 extern int signgam; # 189 "/usr/include/math.h" 3 4 enum { FP_NAN = 0, FP_INFINITE = 1, FP_ZERO = 2, FP_SUBNORMAL = 3, FP_NORMAL = 4 }; # 301 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 326 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 488 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATH_H" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.headers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 22 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 23 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 24 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 43 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/sys/uio.h" 2 3 4 # 39 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/sys/uio.h" 3 4 # 27 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 38 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 27 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 28 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/bits/socket_type.h" 1 3 4 # 24 "/usr/include/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/bits/socket.h" 2 3 4 # 146 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 147 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 162 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 272 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 299 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 345 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 346 "/usr/include/bits/socket.h" 2 3 4 # 379 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/sys/socket.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 22 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 24 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 29 "/usr/include/stdio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 34 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 36 "/usr/include/stdio.h" 2 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 74 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 31 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 82 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 32 "/usr/include/libio.h" 2 3 4 # 49 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 50 "/usr/include/libio.h" 2 3 4 # 144 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 154 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 177 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 245 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 293 "/usr/include/libio.h" 3 4 __off64_t _offset; # 302 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 338 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 390 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 434 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 464 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 75 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 90 "/usr/include/stdio.h" 3 4 typedef __off_t off_t; # 102 "/usr/include/stdio.h" 3 4 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 164 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 165 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (const char *__filename) __attribute__ ((__nothrow__ , __leaf__)); extern int rename (const char *__old, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern int renameat (int __oldfd, const char *__old, int __newfd, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern FILE *tmpfile (void) ; # 209 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; # 227 "/usr/include/stdio.h" 3 4 extern char *tempnam (const char *__dir, const char *__pfx) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 252 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 266 "/usr/include/stdio.h" 3 4 extern FILE *fopen (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; # 295 "/usr/include/stdio.h" 3 4 # 306 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; # 319 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int fprintf (FILE *__restrict __stream, const char *__restrict __format, ...); extern int printf (const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 412 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) ; extern int scanf (const char *__restrict __format, ...) ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__ , __leaf__)); # 443 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__ , __leaf__)) ; # 463 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 494 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 522 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 550 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 561 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 594 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 638 "/usr/include/stdio.h" 3 4 extern char *gets (char *__s) __attribute__ ((__deprecated__)); # 665 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (const char *__restrict __s, FILE *__restrict __stream); extern int puts (const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 737 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 773 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 792 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, const fpos_t *__pos); # 815 "/usr/include/stdio.h" 3 4 # 824 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void perror (const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 4 # 26 "/usr/include/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern const char *const sys_errlist[]; # 854 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; # 872 "/usr/include/stdio.h" 3 4 extern FILE *popen (const char *__command, const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 912 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); # 942 "/usr/include/stdio.h" 3 4 # 25 "/usr/include/malloc.h" 2 3 4 # 35 "/usr/include/malloc.h" 3 4 extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *pvalloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__ , __leaf__)); # 121 "/usr/include/malloc.h" 3 4 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__ , __leaf__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void malloc_stats (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_info (int __options, FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern void *malloc_get_state (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void (*volatile __malloc_initialize_hook) (void) __attribute__ ((__deprecated__)); extern void (*volatile __free_hook) (void *__ptr, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __malloc_hook)(size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __realloc_hook)(void *__ptr, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __memalign_hook)(size_t __alignment, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void (*volatile __after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 21 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/endian.h" 2 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 26 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/strings.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/strings.h" 2 3 4 # 39 "/usr/include/strings.h" 3 4 extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); # 76 "/usr/include/strings.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 104 "/usr/include/strings.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((const)); extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 128 "/usr/include/strings.h" 2 3 4 extern int strcasecmp_l (const char *__s1, const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (const char *__s1, const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 22 "/usr/include/sched.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 4 # 72 "/usr/include/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 95 "/usr/include/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 118 "/usr/include/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 201 "/usr/include/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 21 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 7 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/asm/posix_types.h" 1 3 4 # 1 "/usr/include/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 25 "/usr/include/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 25 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 30 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 102 "/usr/include/bits/sigset.h" 3 4 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 33 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/signum.h" 1 3 4 # 58 "/usr/include/signal.h" 2 3 4 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 76 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/siginfo.h" 1 3 4 # 24 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 58 "/usr/include/bits/siginfo.h" 3 4 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; short int si_addr_lsb; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 153 "/usr/include/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR, BUS_MCEERR_AR, BUS_MCEERR_AO }; # 257 "/usr/include/bits/siginfo.h" 3 4 enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 309 "/usr/include/bits/siginfo.h" 3 4 typedef union pthread_attr_t pthread_attr_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 100 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 4 # 127 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); # 167 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 189 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 209 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 245 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigaction.h" 1 3 4 # 24 "/usr/include/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 246 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 303 "/usr/include/signal.h" 3 4 extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 327 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/bits/sigcontext.h" 1 3 4 # 29 "/usr/include/bits/sigcontext.h" 3 4 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 121 "/usr/include/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 333 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 343 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/bits/sigstack.h" 1 3 4 # 25 "/usr/include/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 49 "/usr/include/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 350 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/sys/ucontext.h" 1 3 4 # 22 "/usr/include/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 23 "/usr/include/sys/ucontext.h" 2 3 4 # 31 "/usr/include/sys/ucontext.h" 3 4 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 92 "/usr/include/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 353 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 387 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 388 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/sigthread.h" 1 3 4 # 30 "/usr/include/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 389 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 36 "/usr/include/sys/wait.h" 2 3 4 # 60 "/usr/include/sys/wait.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 77 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 78 "/usr/include/sys/wait.h" 2 3 4 # 99 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 113 "/usr/include/sys/wait.h" 3 4 extern __pid_t wait (__WAIT_STATUS __stat_loc); # 136 "/usr/include/sys/wait.h" 3 4 extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); typedef __id_t id_t; # 1 "/usr/include/bits/siginfo.h" 1 3 4 # 24 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 2 3 4 # 147 "/usr/include/sys/wait.h" 2 3 4 # 159 "/usr/include/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 513 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 578 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 711 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 774 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 811 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 898 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 950 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 4 # 955 "/usr/include/stdlib.h" 2 3 4 # 967 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 21 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 23 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 28 "/usr/include/sched.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 4 # 72 "/usr/include/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 95 "/usr/include/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 118 "/usr/include/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 201 "/usr/include/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/setjmp.h" 1 3 4 # 26 "/usr/include/bits/setjmp.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 28 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 116 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 157 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 192 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 230 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 273 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 431 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 496 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 508 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 542 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 682 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 694 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 735 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 808 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 890 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 1002 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1046 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1113 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1147 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); # 1161 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 25 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/bits/setjmp.h" 1 3 4 # 26 "/usr/include/bits/setjmp.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 31 "/usr/include/setjmp.h" 2 3 4 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; # 102 "/usr/include/setjmp.h" 3 4 extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 112 "/usr/include/setjmp.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 25 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 30 "/usr/include/sys/utsname.h" 2 3 4 # 48 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 81 "/usr/include/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 25 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/limits.h" 2 3 4 # 143 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 38 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 2 3 4 # 161 "/usr/include/bits/posix1_lim.h" 2 3 4 # 144 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 148 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 2 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 25 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/bits/fcntl.h" 1 3 4 # 35 "/usr/include/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 61 "/usr/include/bits/fcntl.h" 3 4 # 1 "/usr/include/bits/fcntl-linux.h" 1 3 4 # 345 "/usr/include/bits/fcntl-linux.h" 3 4 # 419 "/usr/include/bits/fcntl-linux.h" 3 4 # 61 "/usr/include/bits/fcntl.h" 2 3 4 # 36 "/usr/include/fcntl.h" 2 3 4 typedef __mode_t mode_t; typedef __off_t off_t; # 60 "/usr/include/fcntl.h" 3 4 typedef __pid_t pid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 68 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/bits/stat.h" 1 3 4 # 46 "/usr/include/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 4 __syscall_slong_t __glibc_reserved[3]; # 115 "/usr/include/bits/stat.h" 3 4 }; # 69 "/usr/include/fcntl.h" 2 3 4 # 160 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 169 "/usr/include/fcntl.h" 3 4 extern int open (const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 193 "/usr/include/fcntl.h" 3 4 extern int openat (int __fd, const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 215 "/usr/include/fcntl.h" 3 4 extern int creat (const char *__file, mode_t __mode) __attribute__ ((__nonnull__ (1))); # 244 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, off_t __len); # 261 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, off_t __offset, off_t __len, int __advise) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, off_t __offset, off_t __len); # 305 "/usr/include/fcntl.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 # 44 "/usr/include/string.h" 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 96 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 127 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 164 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 341 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 396 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 426 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 444 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 488 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 516 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 533 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 556 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 643 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 25 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 29 "/usr/include/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 25 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 25 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/pwd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/pwd.h" 2 3 4 # 72 "/usr/include/pwd.h" 3 4 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); # 94 "/usr/include/pwd.h" 3 4 extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (const char *__name); # 139 "/usr/include/pwd.h" 3 4 extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 163 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 183 "/usr/include/pwd.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/float.h" 1 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 23 "/usr/include/sys/param.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 24 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 26 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 143 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 38 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 2 3 4 # 161 "/usr/include/bits/posix1_lim.h" 2 3 4 # 144 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 148 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 2 3 4 # 27 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 30 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 102 "/usr/include/bits/sigset.h" 3 4 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 33 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; # 57 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/signum.h" 1 3 4 # 58 "/usr/include/signal.h" 2 3 4 # 75 "/usr/include/signal.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 76 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/siginfo.h" 1 3 4 # 24 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 58 "/usr/include/bits/siginfo.h" 3 4 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; short int si_addr_lsb; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 153 "/usr/include/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR, BUS_MCEERR_AR, BUS_MCEERR_AO }; # 257 "/usr/include/bits/siginfo.h" 3 4 enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 313 "/usr/include/bits/siginfo.h" 3 4 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 100 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 4 # 127 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); # 167 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 189 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 209 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 245 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigaction.h" 1 3 4 # 24 "/usr/include/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 246 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 303 "/usr/include/signal.h" 3 4 extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 327 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/bits/sigcontext.h" 1 3 4 # 29 "/usr/include/bits/sigcontext.h" 3 4 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 121 "/usr/include/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 333 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 343 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/bits/sigstack.h" 1 3 4 # 25 "/usr/include/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 49 "/usr/include/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 350 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/sys/ucontext.h" 1 3 4 # 22 "/usr/include/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 23 "/usr/include/sys/ucontext.h" 2 3 4 # 31 "/usr/include/sys/ucontext.h" 3 4 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 92 "/usr/include/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 353 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 388 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigthread.h" 1 3 4 # 30 "/usr/include/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 389 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 29 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/bits/param.h" 1 3 4 # 28 "/usr/include/bits/param.h" 3 4 # 1 "/usr/include/linux/param.h" 1 3 4 # 1 "/usr/include/asm/param.h" 1 3 4 # 1 "/usr/include/asm-generic/param.h" 1 3 4 # 1 "/usr/include/asm/param.h" 2 3 4 # 5 "/usr/include/linux/param.h" 2 3 4 # 29 "/usr/include/bits/param.h" 2 3 4 # 32 "/usr/include/sys/param.h" 2 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 25 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 22 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 24 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 23 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 200 "/usr/include/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 24 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 43 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/sys/uio.h" 2 3 4 # 39 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/sys/uio.h" 3 4 # 27 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 38 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 27 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 28 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/bits/socket_type.h" 1 3 4 # 24 "/usr/include/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/bits/socket.h" 2 3 4 # 146 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 147 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 162 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 272 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 299 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 345 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 346 "/usr/include/bits/socket.h" 2 3 4 # 379 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/sys/socket.h" 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/bits/in.h" 1 3 4 # 138 "/usr/include/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 38 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135 }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; # 209 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 237 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 374 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 386 "/usr/include/netinet/in.h" 2 3 4 # 501 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 628 "/usr/include/netinet/in.h" 3 4 # 28 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/rpc/netdb.h" 1 3 4 # 42 "/usr/include/rpc/netdb.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 43 "/usr/include/rpc/netdb.h" 2 3 4 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__ , __leaf__)); extern void endrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbyname (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbyname_r (const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); # 33 "/usr/include/netdb.h" 2 3 4 # 42 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/bits/netdb.h" 1 3 4 # 26 "/usr/include/bits/netdb.h" 3 4 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 43 "/usr/include/netdb.h" 2 3 4 # 53 "/usr/include/netdb.h" 3 4 extern int *__h_errno_location (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 92 "/usr/include/netdb.h" 3 4 extern void herror (const char *__str) __attribute__ ((__nothrow__ , __leaf__)); extern const char *hstrerror (int __err_num) __attribute__ ((__nothrow__ , __leaf__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (const char *__name); # 155 "/usr/include/netdb.h" 3 4 extern struct hostent *gethostbyname2 (const char *__name, int __af); # 167 "/usr/include/netdb.h" 3 4 extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); # 198 "/usr/include/netdb.h" 3 4 extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (const char *__name); # 237 "/usr/include/netdb.h" 3 4 extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (const char *__name, const char *__proto); extern struct servent *getservbyport (int __port, const char *__proto); # 308 "/usr/include/netdb.h" 3 4 extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (const char *__restrict __name, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (const char *__name); extern struct protoent *getprotobynumber (int __proto); # 374 "/usr/include/netdb.h" 3 4 extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); # 395 "/usr/include/netdb.h" 3 4 extern int setnetgrent (const char *__netgroup); extern void endnetgrent (void); # 412 "/usr/include/netdb.h" 3 4 extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); # 423 "/usr/include/netdb.h" 3 4 extern int innetgr (const char *__netgroup, const char *__host, const char *__user, const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); # 451 "/usr/include/netdb.h" 3 4 extern int rcmd (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p); # 463 "/usr/include/netdb.h" 3 4 extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 479 "/usr/include/netdb.h" 3 4 extern int rexec (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p); # 491 "/usr/include/netdb.h" 3 4 extern int rexec_af (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 505 "/usr/include/netdb.h" 3 4 extern int ruserok (const char *__rhost, int __suser, const char *__remuser, const char *__locuser); # 515 "/usr/include/netdb.h" 3 4 extern int ruserok_af (const char *__rhost, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); # 528 "/usr/include/netdb.h" 3 4 extern int iruserok (uint32_t __raddr, int __suser, const char *__remuser, const char *__locuser); # 539 "/usr/include/netdb.h" 3 4 extern int iruserok_af (const void *__raddr, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); # 551 "/usr/include/netdb.h" 3 4 extern int rresvport (int *__alport); # 560 "/usr/include/netdb.h" 3 4 extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 662 "/usr/include/netdb.h" 3 4 extern int getaddrinfo (const char *__restrict __name, const char *__restrict __service, const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__ , __leaf__)); extern const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__ , __leaf__)); extern int getnameinfo (const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, int __flags); # 713 "/usr/include/netdb.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 22 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/search.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/search.h" 2 3 4 # 44 "/usr/include/search.h" 3 4 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__ , __leaf__)); extern void remque (void *__elem) __attribute__ ((__nothrow__ , __leaf__)); typedef int (*__compar_fn_t) (const void *, const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; # 87 "/usr/include/search.h" 3 4 extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__ , __leaf__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__ , __leaf__)); extern void hdestroy (void) __attribute__ ((__nothrow__ , __leaf__)); # 118 "/usr/include/search.h" 3 4 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (const void *__key, void *const *__rootp, __compar_fn_t __compar); extern void *tdelete (const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (const void *__nodep, VISIT __value, int __level); extern void twalk (const void *__root, __action_fn_t __action); # 164 "/usr/include/search.h" 3 4 extern void *lfind (const void *__key, const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 30 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 31 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 23 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 26 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 28 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 30 "/usr/include/sys/time.h" 2 3 4 # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 71 "/usr/include/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/sys/time.h" 3 4 # 32 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 33 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/user.h" 1 3 4 # 27 "/usr/include/sys/user.h" 3 4 struct user_fpregs_struct { unsigned short int cwd; unsigned short int swd; unsigned short int ftw; unsigned short int fop; __extension__ unsigned long long int rip; __extension__ unsigned long long int rdp; unsigned int mxcsr; unsigned int mxcr_mask; unsigned int st_space[32]; unsigned int xmm_space[64]; unsigned int padding[24]; }; struct user_regs_struct { __extension__ unsigned long long int r15; __extension__ unsigned long long int r14; __extension__ unsigned long long int r13; __extension__ unsigned long long int r12; __extension__ unsigned long long int rbp; __extension__ unsigned long long int rbx; __extension__ unsigned long long int r11; __extension__ unsigned long long int r10; __extension__ unsigned long long int r9; __extension__ unsigned long long int r8; __extension__ unsigned long long int rax; __extension__ unsigned long long int rcx; __extension__ unsigned long long int rdx; __extension__ unsigned long long int rsi; __extension__ unsigned long long int rdi; __extension__ unsigned long long int orig_rax; __extension__ unsigned long long int rip; __extension__ unsigned long long int cs; __extension__ unsigned long long int eflags; __extension__ unsigned long long int rsp; __extension__ unsigned long long int ss; __extension__ unsigned long long int fs_base; __extension__ unsigned long long int gs_base; __extension__ unsigned long long int ds; __extension__ unsigned long long int es; __extension__ unsigned long long int fs; __extension__ unsigned long long int gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; __extension__ unsigned long long int u_tsize; __extension__ unsigned long long int u_dsize; __extension__ unsigned long long int u_ssize; __extension__ unsigned long long int start_code; __extension__ unsigned long long int start_stack; __extension__ long long int signal; int reserved; __extension__ union { struct user_regs_struct* u_ar0; __extension__ unsigned long long int __u_ar0_word; }; __extension__ union { struct user_fpregs_struct* u_fpstate; __extension__ unsigned long long int __u_fpstate_word; }; __extension__ unsigned long long int magic; char u_comm [32]; __extension__ unsigned long long int u_debugreg [8]; }; # 34 "/usr/include/sys/procfs.h" 2 3 4 __extension__ typedef unsigned long long elf_greg_t; # 49 "/usr/include/sys/procfs.h" 3 4 typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 63 "/usr/include/sys/procfs.h" 3 4 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; # 82 "/usr/include/sys/procfs.h" 3 4 struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 21 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/bits/resource.h" 1 3 4 # 23 "/usr/include/bits/resource.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/bits/resource.h" 2 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 131 "/usr/include/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 158 "/usr/include/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 176 "/usr/include/bits/resource.h" 3 4 }; # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 180 "/usr/include/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; __extension__ union { long int ru_maxrss; __syscall_slong_t __ru_maxrss_word; }; __extension__ union { long int ru_ixrss; __syscall_slong_t __ru_ixrss_word; }; __extension__ union { long int ru_idrss; __syscall_slong_t __ru_idrss_word; }; __extension__ union { long int ru_isrss; __syscall_slong_t __ru_isrss_word; }; __extension__ union { long int ru_minflt; __syscall_slong_t __ru_minflt_word; }; __extension__ union { long int ru_majflt; __syscall_slong_t __ru_majflt_word; }; __extension__ union { long int ru_nswap; __syscall_slong_t __ru_nswap_word; }; __extension__ union { long int ru_inblock; __syscall_slong_t __ru_inblock_word; }; __extension__ union { long int ru_oublock; __syscall_slong_t __ru_oublock_word; }; __extension__ union { long int ru_msgsnd; __syscall_slong_t __ru_msgsnd_word; }; __extension__ union { long int ru_msgrcv; __syscall_slong_t __ru_msgrcv_word; }; __extension__ union { long int ru_nsignals; __syscall_slong_t __ru_nsignals_word; }; __extension__ union { long int ru_nvcsw; __syscall_slong_t __ru_nvcsw_word; }; __extension__ union { long int ru_nivcsw; __syscall_slong_t __ru_nivcsw_word; }; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 328 "/usr/include/bits/resource.h" 3 4 # 25 "/usr/include/sys/resource.h" 2 3 4 typedef __id_t id_t; # 42 "/usr/include/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 69 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 25 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/unistd.h" 2 3 4 # 202 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/bits/posix_opt.h" 1 3 4 # 203 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/bits/environments.h" 1 3 4 # 22 "/usr/include/bits/environments.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/environments.h" 2 3 4 # 207 "/usr/include/unistd.h" 2 3 4 # 217 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 218 "/usr/include/unistd.h" 2 3 4 typedef __ssize_t ssize_t; # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 227 "/usr/include/unistd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 255 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 287 "/usr/include/unistd.h" 3 4 extern int access (const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 304 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 334 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 353 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, const void *__buf, size_t __n) ; # 376 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, const void *__buf, size_t __n, __off_t __offset) ; # 417 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 432 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 444 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 469 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 511 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 525 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 543 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (const char *__path, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (const char *__path, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (const char *__file, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (const char *__file, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 598 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/bits/confname.h" 1 3 4 # 24 "/usr/include/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 610 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 660 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 700 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; # 756 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, const char *__from, int __tofd, const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (const char *__from, int __tofd, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 871 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 57 "/usr/include/getopt.h" 3 4 extern char *optarg; # 71 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 150 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 872 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (const char *__prompt) __attribute__ ((__nonnull__ (1))); extern int fsync (int __fd); # 969 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 993 "/usr/include/unistd.h" 3 4 extern int truncate (const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1016 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1037 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1058 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1081 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1112 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1151 "/usr/include/unistd.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 21 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 24 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 23 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 200 "/usr/include/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 24 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 43 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/sys/uio.h" 2 3 4 # 39 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/sys/uio.h" 3 4 # 27 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 38 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 27 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 28 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/bits/socket_type.h" 1 3 4 # 24 "/usr/include/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/bits/socket.h" 2 3 4 # 146 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 147 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 162 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 272 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 299 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 345 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 346 "/usr/include/bits/socket.h" 2 3 4 # 379 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/sys/socket.h" 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/bits/in.h" 1 3 4 # 138 "/usr/include/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 38 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135 }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; # 209 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 237 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 374 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 386 "/usr/include/netinet/in.h" 2 3 4 # 501 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 628 "/usr/include/netinet/in.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.headers/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-F9l5hH/config.utilities.cacheDetails Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-F9l5hH/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST check_siginfo_t from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-F9l5hH/config.types Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:13:11: warning: unused variable ?a? [-Wunused-variable] siginfo_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:13:1: error: unknown type name ?__int64? __int64 a;; ^ /tmp/petsc-F9l5hH/config.types/conftest.c:13:9: warning: unused variable ?a? [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:13:8: warning: unused variable ?a? [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:13:8: warning: unused variable ?a? [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:13:7: warning: unused variable ?a? [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:13:9: warning: unused variable ?a? [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:13:7: warning: unused variable ?a? [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.types/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.types/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.types/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.types/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.types/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.types/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 # 146 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 3 "/tmp/petsc-F9l5hH/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:6:17: warning: variable ?x? set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:6:17: warning: variable ?x? set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -fopenmp -O3 /tmp/petsc-F9l5hH/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.types/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.types/conftest.F Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.F:4.43: real(kind=selected_real_kind(10)) d 1 Warning: Unused variable 'd' declared at (1) /tmp/petsc-F9l5hH/config.types/conftest.F:3.45: integer(kind=selected_int_kind(10)) i 1 Warning: Unused variable 'i' declared at (1) Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:30:9: warning: ?t? is used uninitialized in this function [-Wuninitialized] *t++ = 0; ^ /tmp/petsc-F9l5hH/config.types/conftest.c:46:25: warning: ?b? is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.types/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.types/conftest.c:11:3: error: unknown type name ?not? not big endian ^ /tmp/petsc-F9l5hH/config.types/conftest.c:11:11: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?endian? not big endian ^ Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:356) Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Popping language C Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -fopenmp -O3 /tmp/petsc-F9l5hH/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" Popping language Cxx ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lsocket -lnsl -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lfpe -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lsocket -lnsl -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lfpe -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_sin?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:5:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_sin() { double x = 0,y; y = sin(x); ^ /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_floor?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:8:43: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_floor() { double x = 0,y; y = floor(x); ^ /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_log10?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:11:43: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_log10() { double x = 0,y; y = log10(x); ^ /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_pow?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:14:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_pow() { double x = 0,y ; y = pow(x, x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: /tmp/petsc-F9l5hH/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.2.5' /lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Popping language C Checking for functions [sin floor log10 pow] in library ['m'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_sin?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:5:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_sin() { double x = 0,y; y = sin(x); ^ /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_floor?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:8:43: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_floor() { double x = 0,y; y = floor(x); ^ /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_log10?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:11:43: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_log10() { double x = 0,y; y = log10(x); ^ /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_pow?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:14:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_pow() { double x = 0,y ; y = pow(x, x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Using libm for the math library ================================================================================ TEST checkMathErf from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_erf?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:5:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_erf() { double x = 0,y; y = erf(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_tgamma?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:5:44: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double x = 0,y; y = tgamma(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:293) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:293) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_log2?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:5:42: warning: variable ?y? set but not used [-Wunused-but-set-variable] static void _check_log2() { double x = 1,y; y = log2(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log2(double); static void _check_log2() { double x = 1,y; y = log2(x); ; } int main() { _check_log2();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkCompression from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:302) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:302) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_compress?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:5:119: warning: variable ?ret? set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_uncompress?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:8:121: warning: variable ?ret? set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x19): undefined reference to `compress' conftest.c:(.text.startup+0x32): undefined reference to `uncompress' collect2: error: ld returned 1 exit status Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_compress?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:5:119: warning: variable ?ret? set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-F9l5hH/config.libraries/conftest.c: In function ?_check_uncompress?: /tmp/petsc-F9l5hH/config.libraries/conftest.c:8:121: warning: variable ?ret? set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lz -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBZ" to "1" Popping language C Using libz for the compression library ================================================================================ TEST checkRealtime from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:323) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:323) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:339) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:339) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -ldl -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 22 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 28 "/usr/include/dlfcn.h" 2 3 4 # 52 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 82 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 188 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "0" Executing: mpicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/libraryOptions.py:91) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:91) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_SIZE" to "PETSC_SIZEOF_SHORT" ================================================================================ TEST configureCPURelax from config.atomics(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-F9l5hH/config.atomics Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.atomics/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.atomics/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.atomics/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.atomics/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST checkMemcmp from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /tmp/petsc-F9l5hH/config.functions Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.functions/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.functions/conftest Executing: /tmp/petsc-F9l5hH/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 7 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/asm/posix_types.h" 1 3 4 # 1 "/usr/include/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 21 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 7 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/asm/posix_types.h" 1 3 4 # 1 "/usr/include/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 25 "/usr/include/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-F9l5hH/config.functions/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.functions/conftest.c:17:1: warning: implicit declaration of function ?sysinfo? [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ?vprintf? char vprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_VPRINTF" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ?vfprintf? char vfprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_VFPRINTF" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.functions/conftest.c:6:1: warning: implicit declaration of function ?_vsnprintf? [-Wimplicit-function-declaration] _vsnprintf(0,0,0,0); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { _vsnprintf(0,0,0,0); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0xf): undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status Checking for functions [vsnprintf] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ?vsnprintf? char vsnprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl ================================================================================ TEST checkNanosleep from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:206) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:206) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:182) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:182) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.types -fopenmp -O3 /tmp/petsc-F9l5hH/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.functions/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:192) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:192) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:6:5: warning: variable ?ierr? set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:198) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:198) Checks whether the variable argument list functionality is working Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _mkdir time sysctlbyname stricmp] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ?snprintf? char snprintf(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ?bzero? char bzero(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:36:6: warning: conflicting types for built-in function ?fork? char fork(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:48:6: warning: conflicting types for built-in function ?strcasecmp? char strcasecmp(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:52:6: warning: conflicting types for built-in function ?memmove? char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _mkdir(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x3f): warning: the `getwd' function is dangerous and should not be used. conftest.c:(.text.startup+0x15): undefined reference to `_sleep' conftest.c:(.text.startup+0x38): undefined reference to `_getcwd' conftest.c:(.text.startup+0x4d): undefined reference to `_lseek' conftest.c:(.text.startup+0x5b): undefined reference to `_access' conftest.c:(.text.startup+0x93): undefined reference to `_snprintf' conftest.c:(.text.startup+0xb6): undefined reference to `sbreak' conftest.c:(.text.startup+0xe7): undefined reference to `_set_output_format' conftest.c:(.text.startup+0xee): undefined reference to `PXFGETARG' conftest.c:(.text.startup+0x13b): undefined reference to `_mkdir' conftest.c:(.text.startup+0x149): undefined reference to `sysctlbyname' conftest.c:(.text.startup+0x150): undefined reference to `stricmp' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:17:6: warning: conflicting types for built-in function ?bzero? char bzero(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:26:6: warning: conflicting types for built-in function ?fork? char fork(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ?strcasecmp? char strcasecmp(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:23:6: warning: conflicting types for built-in function ?memmove? char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_sleep' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ?snprintf? char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [getwd] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_lseek' collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_access' collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Checking for functions [sysctlbyname] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `stricmp' collect2: error: ld returned 1 exit status ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^compilation terminated.: Checking for header: fpxcp.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^compilation terminated.: Checking for header: floatingpoint.h Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.headers/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.c" 2stderr: /tmp/petsc-F9l5hH/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-F9l5hH/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language FC Popping language FC Pushing language C Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C Checking for functions [get_command_argument_] in library [''] ['-L/usr/local/lib', '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/usr/local/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `get_command_argument_' collect2: error: ld returned 1 exit status Popping language C Checking for functions [getarg_] in library [''] ['-L/usr/local/lib', '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/usr/local/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `getarg_' collect2: error: ld returned 1 exit status Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Checking for functions [ipxfargc_] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [iargc_] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `iargc_' collect2: error: ld returned 1 exit status Checking for functions [GETARG at 16] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.functions/conftest.c:13:12: error: stray ?@? in program char GETARG at 16(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:13:13: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before numeric constant char GETARG at 16(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.functions/conftest.c:21:27: error: missing ')' after "defined" #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:21:28: error: missing binary operator before token "16" #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:24:7: error: stray ?@? in program GETARG at 16(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:24:1: error: ?GETARG? undeclared (first use in this function) GETARG at 16(); ^ /tmp/petsc-F9l5hH/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-F9l5hH/config.functions/conftest.c:24:8: error: expected ?;? before numeric constant GETARG at 16(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG at 16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) GETARG at 16_will_always_fail_with_ENOSYS(); #else GETARG at 16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.functions/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-F9l5hH/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.functions/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm Defined "HAVE__GFORTRAN_IARGC" to "1" ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-F9l5hH/config.utilities.featureTestMacros Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: In file included from /usr/include/stdlib.h:24:0, from /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.c:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMissingDefines from config.utilities.missing(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /tmp/petsc-F9l5hH/config.utilities.missing Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c:6:9: warning: unused variable ?foo? [-Wunused-variable] u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:110) Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.utilities.missing -fopenmp -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:135) Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.utilities.missing -fopenmp -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.utilities.missing/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.utilities.missing/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureMkdir from config.programs(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/programs.py:23) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:23) Make sure we can have mkdir automatically make intermediate directories Checking for program ./mkdir...not found Checking for program /home/mpovolot/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/programs.py:45) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:45) Check for autoreconf Checking for program ./autoreconf...not found Checking for program /home/mpovolot/bin/autoreconf...not found Checking for program /bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-F9l5hH/config.programs Executing: cd /tmp/petsc-F9l5hH/config.programs/autoconfdir&&/bin/autoreconf autoreconf test successful! Checking for program ./libtoolize...not found Checking for program /home/mpovolot/bin/libtoolize...not found Checking for program /bin/libtoolize...not found Checking for program /usr/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/local/visit/bin/libtoolize...not found Checking for program /opt/matlab/bin/libtoolize...not found Checking for program /home/mpovolot/libtoolize...not found Checking for program /home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/bin/win32fe/libtoolize...not found Checking for program ./glibtoolize...not found Checking for program /home/mpovolot/bin/glibtoolize...not found Checking for program /bin/glibtoolize...not found Checking for program /usr/bin/glibtoolize...not found Checking for program /usr/local/bin/glibtoolize...not found Checking for program /usr/local/visit/bin/glibtoolize...not found Checking for program /opt/matlab/bin/glibtoolize...not found Checking for program /home/mpovolot/glibtoolize...not found Checking for program /home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/bin/win32fe/glibtoolize...not found ================================================================================ TEST configurePrograms from config.programs(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/programs.py:72) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:72) Check for the programs needed to build and run PETSc Checking for program ./sh...not found Checking for program /home/mpovolot/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program ./sed...not found Checking for program /home/mpovolot/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-F9l5hH/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program ./mv...not found Checking for program /home/mpovolot/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program ./cp...not found Checking for program /home/mpovolot/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program ./grep...not found Checking for program /home/mpovolot/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program ./rm...not found Checking for program /home/mpovolot/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program ./diff...not found Checking for program /home/mpovolot/bin/diff...not found Checking for program /bin/diff...found Executing: "/bin/diff" -w "/tmp/petsc-F9l5hH/config.programs/diff1" "/tmp/petsc-F9l5hH/config.programs/diff2" Defined make macro "DIFF" to "/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/mpovolot/ps...not found Checking for program /home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/bin/win32fe/ps...not found Checking for program ./gzip...not found Checking for program /home/mpovolot/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/bin/python" ================================================================================ TEST configureMake from config.packages.make(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/make.py:83) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:83) Check for user specified make - or gmake, make Checking for program ./gmake...not found Checking for program /home/mpovolot/bin/gmake...not found Checking for program /bin/gmake...found Defined make macro "MAKE" to "/bin/gmake" Executing: /bin/gmake --version stdout: GNU Make 4.0 Built for x86_64-redhat-linux-gnu Copyright (C) 1988-2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. ================================================================================ TEST configureCheckGNUMake from config.packages.make(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/make.py:120) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:120) Setup other GNU make stuff Executing: /bin/gmake --version stdout: GNU Make 4.0 Built for x86_64-redhat-linux-gnu Copyright (C) 1988-2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/make.py:158) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:158) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "NPMAX" to "8" Defined make macro "OMAKE_PRINTDIR " to "/bin/gmake --print-directory" Defined make macro "OMAKE" to "/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:483) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:483) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.utilities.missing -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx Checking for headers Compiler specific search MPI: ['/usr/local/include'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: mpic++ -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers -I/usr/local/include /tmp/petsc-F9l5hH/config.headers/conftest.cc stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/usr/local/include/mpi.h" 1 3 # 14 "/usr/local/include/mpi.h" 3 extern "C" { # 98 "/usr/local/include/mpi.h" 3 typedef int MPI_Datatype; # 281 "/usr/local/include/mpi.h" 3 typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 364 "/usr/local/include/mpi.h" 3 typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; # 396 "/usr/local/include/mpi.h" 3 typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; # 424 "/usr/local/include/mpi.h" 3 typedef int MPI_Errhandler; # 445 "/usr/local/include/mpi.h" 3 typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); # 499 "/usr/local/include/mpi.h" 3 enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18, MPI_COMBINER_HINDEXED_BLOCK = 19 }; typedef int MPI_Info; # 549 "/usr/local/include/mpi.h" 3 typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; # 568 "/usr/local/include/mpi.h" 3 typedef long long MPI_Offset; typedef struct MPI_Status { int count_lo; int count_hi_and_cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum_s; struct MPIR_T_cvar_handle_s; struct MPIR_T_pvar_handle_s; struct MPIR_T_pvar_session_s; typedef struct MPIR_T_enum_s * MPI_T_enum; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES; # 605 "/usr/local/include/mpi.h" 3 typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t; typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO } MPIR_T_bind_t; typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_CONSTANT = 60438, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t; typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIR_T_PVAR_CLASS_FIRST = 240, MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC, MPIR_T_PVAR_CLASS_LAST, MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t; # 727 "/usr/local/include/mpi.h" 3 extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; # 742 "/usr/local/include/mpi.h" 3 typedef struct { MPI_Fint count_lo; MPI_Fint count_hi_and_cancelled; MPI_Fint MPI_SOURCE; MPI_Fint MPI_TAG; MPI_Fint MPI_ERROR; } MPI_F08_Status; extern MPI_F08_Status MPIR_F08_MPI_STATUS_IGNORE_OBJ; extern MPI_F08_Status MPIR_F08_MPI_STATUSES_IGNORE_OBJ[1]; extern int MPIR_F08_MPI_IN_PLACE; extern int MPIR_F08_MPI_BOTTOM; extern MPI_F08_Status *MPI_F08_STATUS_IGNORE; extern MPI_F08_Status *MPI_F08_STATUSES_IGNORE; # 766 "/usr/local/include/mpi.h" 3 typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); # 896 "/usr/local/include/mpi.h" 3 typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); # 916 "/usr/local/include/mpi.h" 3 int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Buffer_attach(void *buffer, int size); int MPI_Buffer_detach(void *buffer_addr, int *size); int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Wait(MPI_Request *request, MPI_Status *status); int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int MPI_Request_free(MPI_Request *request); int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int MPI_Cancel(MPI_Request *request); int MPI_Test_cancelled(const MPI_Status *status, int *flag); int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Start(MPI_Request *request); int MPI_Startall(int count, MPI_Request array_of_requests[]); int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int MPI_Address(const void *location, MPI_Aint *address); int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int MPI_Type_size(MPI_Datatype datatype, int *size); int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_commit(MPI_Datatype *datatype); int MPI_Type_free(MPI_Datatype *datatype); int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int MPI_Barrier(MPI_Comm comm); int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int MPI_Op_free(MPI_Op *op); int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Group_size(MPI_Group group, int *size); int MPI_Group_rank(MPI_Group group, int *rank); int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_free(MPI_Group *group); int MPI_Comm_size(MPI_Comm comm, int *size); int MPI_Comm_rank(MPI_Comm comm, int *rank); int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int MPI_Comm_free(MPI_Comm *comm); int MPI_Comm_test_inter(MPI_Comm comm, int *flag); int MPI_Comm_remote_size(MPI_Comm comm, int *size); int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int MPI_Keyval_free(int *keyval); int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int MPI_Attr_delete(MPI_Comm comm, int keyval); int MPI_Topo_test(MPI_Comm comm, int *status); int MPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int MPI_Dims_create(int nnodes, int ndims, int dims[]); int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int MPI_Cartdim_get(MPI_Comm comm, int *ndims); int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int MPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int MPI_Get_processor_name(char *name, int *resultlen); int MPI_Get_version(int *version, int *subversion); int MPI_Get_library_version(char *version, int *resultlen); int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Errhandler_free(MPI_Errhandler *errhandler); int MPI_Error_string(int errorcode, char *string, int *resultlen); int MPI_Error_class(int errorcode, int *errorclass); double MPI_Wtime(void); double MPI_Wtick(void); int MPI_Init(int *argc, char ***argv); int MPI_Finalize(void); int MPI_Initialized(int *flag); int MPI_Abort(MPI_Comm comm, int errorcode); int MPI_Pcontrol(const int level, ...); int MPIR_Dup_fn(MPI_Comm oldcomm, int keyval, void *extra_state, void *attribute_val_in, void *attribute_val_out, int *flag); int MPI_Close_port(const char *port_name); int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_disconnect(MPI_Comm *comm); int MPI_Comm_get_parent(MPI_Comm *parent); int MPI_Comm_join(int fd, MPI_Comm *intercomm); int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int MPI_Open_port(MPI_Info info, char *port_name); int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Win_complete(MPI_Win win); int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_fence(int assert, MPI_Win win); int MPI_Win_free(MPI_Win *win); int MPI_Win_get_group(MPI_Win win, MPI_Group *group); int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); int MPI_Win_test(MPI_Win win, int *flag); int MPI_Win_unlock(int rank, MPI_Win win); int MPI_Win_wait(MPI_Win win); int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPI_Win_detach(MPI_Win win, const void *base); int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int MPI_Win_set_info(MPI_Win win, MPI_Info info); int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int MPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Win_lock_all(int assert, MPI_Win win); int MPI_Win_unlock_all(MPI_Win win); int MPI_Win_flush(int rank, MPI_Win win); int MPI_Win_flush_all(MPI_Win win); int MPI_Win_flush_local(int rank, MPI_Win win); int MPI_Win_flush_local_all(MPI_Win win); int MPI_Win_sync(MPI_Win win); int MPI_Add_error_class(int *errorclass); int MPI_Add_error_code(int errorclass, int *errorcode); int MPI_Add_error_string(int errorcode, const char *string); int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int MPI_Comm_free_keyval(int *comm_keyval); int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int MPI_File_call_errhandler(MPI_File fh, int errorcode); int MPI_Grequest_complete(MPI_Request request); int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); int MPI_Is_thread_main(int *flag); int MPI_Query_thread(int *provided); int MPI_Status_set_cancelled(MPI_Status *status, int flag); int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int MPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int MPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_free_keyval(int *type_keyval); int MPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int MPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int MPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int MPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int MPI_Win_call_errhandler(MPI_Win win, int errorcode); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int MPI_Win_delete_attr(MPI_Win win, int win_keyval); int MPI_Win_free_keyval(int *win_keyval); int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int MPI_Win_set_name(MPI_Win win, const char *win_name); int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int MPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int MPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int MPI_Finalized(int *flag); int MPI_Free_mem(void *base); int MPI_Get_address(const void *location, MPI_Aint *address); int MPI_Info_create(MPI_Info *info); int MPI_Info_delete(MPI_Info info, const char *key); int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int MPI_Info_set(MPI_Info info, const char *key, const char *value); int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int MPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int MPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int MPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int MPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int MPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int MPI_Type_create_f90_integer(int range, MPI_Datatype *newtype); int MPI_Type_create_f90_real(int precision, int range, MPI_Datatype *newtype); int MPI_Type_create_f90_complex(int precision, int range, MPI_Datatype *newtype); int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int MPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int MPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int MPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); MPI_Aint MPI_Aint_add(MPI_Aint base, MPI_Aint disp); MPI_Aint MPI_Aint_diff(MPI_Aint addr1, MPI_Aint addr2); int MPI_T_init_thread(int required, int *provided); int MPI_T_finalize(void); int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int MPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int MPI_T_cvar_get_num(int *num_cvar); int MPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int MPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int MPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int MPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int MPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int MPI_T_pvar_get_num(int *num_pvar); int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int MPI_T_pvar_session_create(MPI_T_pvar_session *session); int MPI_T_pvar_session_free(MPI_T_pvar_session *session); int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_category_get_num(int *num_cat); int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); int MPI_T_category_get_categories(int cat_index, int len, int indices[]); int MPI_T_category_changed(int *stamp); int MPI_T_cvar_get_index(const char *name, int *cvar_index); int MPI_T_pvar_get_index(const char *name, int var_class, int *pvar_index); int MPI_T_category_get_index(const char *name, int *cat_index); int MPIX_Comm_failure_ack(MPI_Comm comm); int MPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int MPIX_Comm_revoke(MPI_Comm comm); int MPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int MPIX_Comm_agree(MPI_Comm comm, int *flag); # 1561 "/usr/local/include/mpi.h" 3 int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Buffer_attach(void *buffer, int size); int PMPI_Buffer_detach(void *buffer_addr, int *size); int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Wait(MPI_Request *request, MPI_Status *status); int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int PMPI_Request_free(MPI_Request *request); int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int PMPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int PMPI_Cancel(MPI_Request *request); int PMPI_Test_cancelled(const MPI_Status *status, int *flag); int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Start(MPI_Request *request); int PMPI_Startall(int count, MPI_Request array_of_requests[]); int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int PMPI_Address(const void *location, MPI_Aint *address); int PMPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int PMPI_Type_size(MPI_Datatype datatype, int *size); int PMPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_commit(MPI_Datatype *datatype); int PMPI_Type_free(MPI_Datatype *datatype); int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int PMPI_Barrier(MPI_Comm comm); int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int PMPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int PMPI_Op_free(MPI_Op *op); int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Group_size(MPI_Group group, int *size); int PMPI_Group_rank(MPI_Group group, int *rank); int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_free(MPI_Group *group); int PMPI_Comm_size(MPI_Comm comm, int *size); int PMPI_Comm_rank(MPI_Comm comm, int *rank); int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int PMPI_Comm_free(MPI_Comm *comm); int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); int PMPI_Comm_remote_size(MPI_Comm comm, int *size); int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int PMPI_Keyval_free(int *keyval); int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int PMPI_Attr_delete(MPI_Comm comm, int keyval); int PMPI_Topo_test(MPI_Comm comm, int *status); int PMPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int PMPI_Dims_create(int nnodes, int ndims, int dims[]); int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int PMPI_Get_processor_name(char *name, int *resultlen); int PMPI_Get_version(int *version, int *subversion); int PMPI_Get_library_version(char *version, int *resultlen); int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Errhandler_free(MPI_Errhandler *errhandler); int PMPI_Error_string(int errorcode, char *string, int *resultlen); int PMPI_Error_class(int errorcode, int *errorclass); double PMPI_Wtime(void); double PMPI_Wtick(void); int PMPI_Init(int *argc, char ***argv); int PMPI_Finalize(void); int PMPI_Initialized(int *flag); int PMPI_Abort(MPI_Comm comm, int errorcode); int PMPI_Pcontrol(const int level, ...); int PMPI_Close_port(const char *port_name); int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_disconnect(MPI_Comm *comm); int PMPI_Comm_get_parent(MPI_Comm *parent); int PMPI_Comm_join(int fd, MPI_Comm *intercomm); int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int PMPI_Open_port(MPI_Info info, char *port_name); int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Win_complete(MPI_Win win); int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_fence(int assert, MPI_Win win); int PMPI_Win_free(MPI_Win *win); int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_test(MPI_Win win, int *flag); int PMPI_Win_unlock(int rank, MPI_Win win); int PMPI_Win_wait(MPI_Win win); int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPI_Win_detach(MPI_Win win, const void *base); int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int PMPI_Win_set_info(MPI_Win win, MPI_Info info); int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int PMPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Win_lock_all(int assert, MPI_Win win); int PMPI_Win_unlock_all(MPI_Win win); int PMPI_Win_flush(int rank, MPI_Win win); int PMPI_Win_flush_all(MPI_Win win); int PMPI_Win_flush_local(int rank, MPI_Win win); int PMPI_Win_flush_local_all(MPI_Win win); int PMPI_Win_sync(MPI_Win win); int PMPI_Add_error_class(int *errorclass); int PMPI_Add_error_code(int errorclass, int *errorcode); int PMPI_Add_error_string(int errorcode, const char *string); int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int PMPI_Comm_free_keyval(int *comm_keyval); int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int PMPI_File_call_errhandler(MPI_File fh, int errorcode); int PMPI_Grequest_complete(MPI_Request request); int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); int PMPI_Is_thread_main(int *flag); int PMPI_Query_thread(int *provided); int PMPI_Status_set_cancelled(MPI_Status *status, int flag); int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int PMPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int PMPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_free_keyval(int *type_keyval); int PMPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int PMPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int PMPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int PMPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int PMPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int PMPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); int PMPI_Win_free_keyval(int *win_keyval); int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int PMPI_Win_set_name(MPI_Win win, const char *win_name); int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int PMPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int PMPI_Finalized(int *flag); int PMPI_Free_mem(void *base); int PMPI_Get_address(const void *location, MPI_Aint *address); int PMPI_Info_create(MPI_Info *info); int PMPI_Info_delete(MPI_Info info, const char *key); int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int PMPI_Info_set(MPI_Info info, const char *key, const char *value); int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int PMPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int PMPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int PMPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int PMPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int PMPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int PMPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int PMPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int PMPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int PMPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); MPI_Aint PMPI_Aint_add(MPI_Aint base, MPI_Aint disp); MPI_Aint PMPI_Aint_diff(MPI_Aint addr1, MPI_Aint addr2); int PMPI_T_init_thread(int required, int *provided); int PMPI_T_finalize(void); int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int PMPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int PMPI_T_cvar_get_num(int *num_cvar); int PMPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int PMPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int PMPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int PMPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int PMPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int PMPI_T_pvar_get_num(int *num_pvar); int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_category_get_num(int *num_cat); int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); int PMPI_T_category_changed(int *stamp); int PMPI_T_cvar_get_index(const char *name, int *cvar_index); int PMPI_T_pvar_get_index(const char *name, int var_class, int *pvar_index); int PMPI_T_category_get_index(const char *name, int *cat_index); int PMPIX_Comm_failure_ack(MPI_Comm comm); int PMPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int PMPIX_Comm_revoke(MPI_Comm comm); int PMPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int PMPIX_Comm_agree(MPI_Comm comm, int *flag); # 2215 "/usr/local/include/mpi.h" 3 # 1 "/usr/local/include/mpio.h" 1 3 # 13 "/usr/local/include/mpio.h" 3 # 1 "/usr/local/include/mpi.h" 1 3 # 14 "/usr/local/include/mpio.h" 2 3 extern "C" { # 123 "/usr/local/include/mpio.h" 3 int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); int MPI_File_close(MPI_File *fh); int MPI_File_delete(const char *filename, MPI_Info info); int MPI_File_set_size(MPI_File fh, MPI_Offset size); int MPI_File_preallocate(MPI_File fh, MPI_Offset size); int MPI_File_get_size(MPI_File fh, MPI_Offset *size); int MPI_File_get_group(MPI_File fh, MPI_Group *group); int MPI_File_get_amode(MPI_File fh, int *amode); int MPI_File_set_info(MPI_File fh, MPI_Info info); int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); int MPI_File_set_atomicity(MPI_File fh, int flag); int MPI_File_get_atomicity(MPI_File fh, int *flag); int MPI_File_sync(MPI_File fh); # 242 "/usr/local/include/mpio.h" 3 int MPI_File_iread_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; # 282 "/usr/local/include/mpio.h" 3 MPI_File MPI_File_f2c(MPI_Fint file); MPI_Fint MPI_File_c2f(MPI_File file); # 343 "/usr/local/include/mpio.h" 3 int PMPI_File_open(MPI_Comm, const char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete(const char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, const char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, const void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, const void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep(const char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 471 "/usr/local/include/mpio.h" 3 int PMPI_File_iread_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iwrite_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iwrite_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; # 495 "/usr/local/include/mpio.h" 3 MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 532 "/usr/local/include/mpio.h" 3 } # 2216 "/usr/local/include/mpi.h" 2 3 } # 2231 "/usr/local/include/mpi.h" 3 # 1 "/usr/local/include/mpicxx.h" 1 3 # 54 "/usr/local/include/mpicxx.h" 3 # 1 "/usr/include/stdio.h" 1 3 4 # 27 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/stdio.h" 2 3 4 extern "C" { # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 36 "/usr/include/stdio.h" 2 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 74 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 31 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 82 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 32 "/usr/include/libio.h" 2 3 4 # 49 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 50 "/usr/include/libio.h" 2 3 4 # 144 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 154 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 177 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 245 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 293 "/usr/include/libio.h" 3 4 __off64_t _offset; # 302 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 338 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); typedef __io_read_fn cookie_read_function_t; typedef __io_write_fn cookie_write_function_t; typedef __io_seek_fn cookie_seek_function_t; typedef __io_close_fn cookie_close_function_t; typedef struct { __io_read_fn *read; __io_write_fn *write; __io_seek_fn *seek; __io_close_fn *close; } _IO_cookie_io_functions_t; typedef _IO_cookie_io_functions_t cookie_io_functions_t; struct _IO_cookie_file; extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write, void *__cookie, _IO_cookie_io_functions_t __fns); extern "C" { extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 434 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) throw (); extern int _IO_ferror (_IO_FILE *__fp) throw (); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) throw (); extern void _IO_funlockfile (_IO_FILE *) throw (); extern int _IO_ftrylockfile (_IO_FILE *) throw (); # 464 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) throw (); # 526 "/usr/include/libio.h" 3 4 } # 75 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 90 "/usr/include/stdio.h" 3 4 typedef __off_t off_t; typedef __off64_t off64_t; typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; typedef _G_fpos64_t fpos64_t; # 164 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 165 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (const char *__filename) throw (); extern int rename (const char *__old, const char *__new) throw (); extern int renameat (int __oldfd, const char *__old, int __newfd, const char *__new) throw (); extern FILE *tmpfile (void) ; # 205 "/usr/include/stdio.h" 3 4 extern FILE *tmpfile64 (void) ; extern char *tmpnam (char *__s) throw () ; extern char *tmpnam_r (char *__s) throw () ; # 227 "/usr/include/stdio.h" 3 4 extern char *tempnam (const char *__dir, const char *__pfx) throw () __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 252 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 262 "/usr/include/stdio.h" 3 4 extern int fcloseall (void); extern FILE *fopen (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; # 295 "/usr/include/stdio.h" 3 4 extern FILE *fopen64 (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen64 (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; extern FILE *fdopen (int __fd, const char *__modes) throw () ; extern FILE *fopencookie (void *__restrict __magic_cookie, const char *__restrict __modes, _IO_cookie_io_functions_t __io_funcs) throw () ; extern FILE *fmemopen (void *__s, size_t __len, const char *__modes) throw () ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) throw () ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) throw (); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) throw (); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) throw (); extern void setlinebuf (FILE *__stream) throw (); extern int fprintf (FILE *__restrict __stream, const char *__restrict __format, ...); extern int printf (const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, const char *__restrict __format, ...) throw (); extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) throw (); extern int snprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 3, 0))); extern int vasprintf (char **__restrict __ptr, const char *__restrict __f, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 2, 0))) ; extern int __asprintf (char **__restrict __ptr, const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int asprintf (char **__restrict __ptr, const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int vdprintf (int __fd, const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) ; extern int scanf (const char *__restrict __format, ...) ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) throw (); # 463 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__scanf__, 2, 0))); # 522 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 550 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 561 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 594 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 638 "/usr/include/stdio.h" 3 4 extern char *gets (char *__s) __attribute__ ((__deprecated__)); # 649 "/usr/include/stdio.h" 3 4 extern char *fgets_unlocked (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 665 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (const char *__restrict __s, FILE *__restrict __stream); extern int puts (const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 726 "/usr/include/stdio.h" 3 4 extern int fputs_unlocked (const char *__restrict __s, FILE *__restrict __stream); # 737 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 773 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 792 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, const fpos_t *__pos); # 815 "/usr/include/stdio.h" 3 4 extern int fseeko64 (FILE *__stream, __off64_t __off, int __whence); extern __off64_t ftello64 (FILE *__stream) ; extern int fgetpos64 (FILE *__restrict __stream, fpos64_t *__restrict __pos); extern int fsetpos64 (FILE *__stream, const fpos64_t *__pos); extern void clearerr (FILE *__stream) throw (); extern int feof (FILE *__stream) throw () ; extern int ferror (FILE *__stream) throw () ; extern void clearerr_unlocked (FILE *__stream) throw (); extern int feof_unlocked (FILE *__stream) throw () ; extern int ferror_unlocked (FILE *__stream) throw () ; extern void perror (const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 4 # 26 "/usr/include/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern const char *const sys_errlist[]; extern int _sys_nerr; extern const char *const _sys_errlist[]; # 854 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) throw () ; extern int fileno_unlocked (FILE *__stream) throw () ; # 872 "/usr/include/stdio.h" 3 4 extern FILE *popen (const char *__command, const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) throw (); extern char *cuserid (char *__s); struct obstack; extern int obstack_printf (struct obstack *__restrict __obstack, const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))); extern int obstack_vprintf (struct obstack *__restrict __obstack, const char *__restrict __format, __gnuc_va_list __args) throw () __attribute__ ((__format__ (__printf__, 2, 0))); extern void flockfile (FILE *__stream) throw (); extern int ftrylockfile (FILE *__stream) throw () ; extern void funlockfile (FILE *__stream) throw (); # 942 "/usr/include/stdio.h" 3 4 } # 55 "/usr/local/include/mpicxx.h" 2 3 enum MPIR_Dummy_seek_type { MPIR_DUMMY_SEEK_COMMA_VAL = -1 , MPIR_SEEK_SET = 0 , SEEK_SET = MPIR_SEEK_SET , MPIR_SEEK_CUR = 1 , SEEK_CUR = MPIR_SEEK_CUR , MPIR_SEEK_END = 2 , SEEK_END = MPIR_SEEK_END }; namespace MPI { extern void MPIR_Call_world_errhand( int ); typedef MPI_Offset Offset; typedef MPI_Aint Aint; typedef MPI_Fint Fint; void MPIR_CXX_InitDatatypeNames( void ); class Comm; class Nullcomm; class Intercomm; class Intracomm; class Cartcomm; class Graphcomm; class File; extern int Detach_buffer( void *&v1 ) ; extern bool Is_initialized( void ) ; extern void Get_processor_name( char * v1, int &v2 ) ; extern void Get_error_string( int v1, char * v2, int &v3 ) ; extern void Compute_dims( int v1, int v2, int v3[] ) ; extern void Get_version( int &v1, int &v2 ) ; extern void Finalize( void ) ; extern void Pcontrol( const int v1, ... ) ; extern void Attach_buffer( void * v1, int v2 ) ; extern int Get_error_class( int v1 ) ; extern Intracomm COMM_WORLD; extern File FILE_NULL; class Exception { protected: int the_real_exception; public: inline Exception(int obj) : the_real_exception(obj) {} inline Exception(void) : the_real_exception(0) {} virtual ~Exception() {} Exception(const Exception &obj) : the_real_exception(obj.the_real_exception){} Exception& operator=(const Exception &obj) { the_real_exception = obj.the_real_exception; return *this; } bool operator== (const Exception &obj) { return (the_real_exception == obj.the_real_exception); } bool operator!= (const Exception &obj) { return (the_real_exception != obj.the_real_exception); } inline operator int*() { return &the_real_exception; } inline operator int() const { return the_real_exception; } Exception& operator=(const int& obj) { the_real_exception = obj; return *this; } protected: char the_error_message[512]; public: int Get_error_code(void) { return the_real_exception; } int Get_error_class(void) { return MPI::Get_error_class(the_real_exception); } const char *Get_error_string(void) { int len; MPI_Error_string(the_real_exception, the_error_message, &len); return the_error_message; } }; class Datatype { friend class Comm; friend class Status; friend class Intracomm; friend class Intercomm; friend class Win; friend class File; friend class Op; protected: MPI_Datatype the_real_datatype; public: inline Datatype(MPI_Datatype obj) : the_real_datatype(obj) {} inline Datatype(void) : the_real_datatype(((MPI_Datatype)0x0c000000)) {} virtual ~Datatype() {} Datatype(const Datatype &obj) : the_real_datatype(obj.the_real_datatype){} Datatype& operator=(const Datatype &obj) { the_real_datatype = obj.the_real_datatype; return *this; } bool operator== (const Datatype &obj) { return (the_real_datatype == obj.the_real_datatype); } bool operator!= (const Datatype &obj) { return (the_real_datatype != obj.the_real_datatype); } inline operator MPI_Datatype*() { return &the_real_datatype; } inline operator MPI_Datatype() const { return the_real_datatype; } Datatype& operator=(const MPI_Datatype& obj) { the_real_datatype = obj; return *this; } virtual void Commit( void ) { { int err = MPI_Type_commit( (MPI_Datatype *) &the_real_datatype ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Free( void ) { { int err = MPI_Type_free( (MPI_Datatype *) &the_real_datatype ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual Datatype Create_indexed( int v1, const int * v2, const int * v3 ) const { Datatype v5; { int err = MPI_Type_indexed( v1, (const int *)v2, (const int *)v3, (MPI_Datatype) the_real_datatype, &(v5.the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v5; } virtual Datatype Create_contiguous( int v1 ) const { Datatype v3; { int err = MPI_Type_contiguous( v1, (MPI_Datatype) the_real_datatype, &(v3.the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v3; } virtual Datatype Create_vector( int v1, int v2, int v3 ) const { Datatype v5; { int err = MPI_Type_vector( v1, v2, v3, (MPI_Datatype) the_real_datatype, &(v5.the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v5; } static Datatype Create_struct( int v1, int v2[], Aint v3[], const Datatype v4[] ) { Datatype v5; MPI_Datatype *l4 = new MPI_Datatype[v1]; { int i4; for (i4=0;i4Call_errhandler( err ); }}; return v2; } virtual int Get_rank( void ) const { int v2; { int err = MPI_Comm_rank( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Prequest Bsend_init( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Bsend_init( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Prequest Ssend_init( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Ssend_init( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual bool Is_inter( void ) const { int v2; { int err = MPI_Comm_test_inter( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } virtual Prequest Rsend_init( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Rsend_init( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Request Ibsend( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Ibsend( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Abort( int v2 ) const { { int err = MPI_Abort( (MPI_Comm) the_real_comm, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Free( void ) { { int err = MPI_Comm_free( (MPI_Comm *) &the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Prequest Send_init( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Send_init( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Recv( void * v1, int v2, const Datatype &v3, int v4, int v5, Status & v7 ) const { { int err = MPI_Recv( v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, (MPI_Status *)&(v7.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Recv( void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Recv( v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv( const void * v1, int v2, const Datatype &v3, int v4, int v5, void * v6, int v7, const Datatype &v8, int v9, int v10, Status & v12 ) const { { int err = MPI_Sendrecv( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, v6, v7, (MPI_Datatype)(v8.the_real_datatype), v9, v10, (MPI_Comm) the_real_comm, (MPI_Status *)&(v12.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv( const void * v1, int v2, const Datatype &v3, int v4, int v5, void * v6, int v7, const Datatype &v8, int v9, int v10 ) const { { int err = MPI_Sendrecv( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, v6, v7, (MPI_Datatype)(v8.the_real_datatype), v9, v10, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv_replace( void * v1, int v2, const Datatype &v3, int v4, int v5, int v6, int v7, Status & v9 ) const { { int err = MPI_Sendrecv_replace( v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, v6, v7, (MPI_Comm) the_real_comm, (MPI_Status *)&(v9.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv_replace( void * v1, int v2, const Datatype &v3, int v4, int v5, int v6, int v7 ) const { { int err = MPI_Sendrecv_replace( v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, v6, v7, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_topology( void ) const { int v2; { int err = MPI_Topo_test( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Request Isend( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Isend( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Probe( int v1, int v2, Status & v4 ) const { { int err = MPI_Probe( v1, v2, (MPI_Comm) the_real_comm, (MPI_Status *)&(v4.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Probe( int v1, int v2 ) const { { int err = MPI_Probe( v1, v2, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } static int Compare( const Comm &v1, const Comm &v2 ) { int v3; { int err = MPI_Comm_compare( (MPI_Comm)(v1.the_real_comm), (MPI_Comm)(v2.the_real_comm), &v3 ) ; if (err) MPIR_Call_world_errhand( err ); }; return v3; } virtual int Get_size( void ) const { int v2; { int err = MPI_Comm_size( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Request Issend( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Issend( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_Comm_set_errhandler( (MPI_Comm) the_real_comm, (MPI_Errhandler)(v2.the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Send( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Send( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Irsend( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Irsend( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Ssend( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Ssend( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Prequest Recv_init( void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Recv_init( v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual bool Iprobe( int v1, int v2, Status & v5 ) const { int v4; { int err = MPI_Iprobe( v1, v2, (MPI_Comm) the_real_comm, &v4, (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual bool Iprobe( int v1, int v2 ) const { int v4; { int err = MPI_Iprobe( v1, v2, (MPI_Comm) the_real_comm, &v4, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Bsend( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Bsend( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Irecv( void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Irecv( v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_Comm_get_errhandler( (MPI_Comm) the_real_comm, &(v2.the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Rsend( const void * v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Rsend( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Gatherv( const void * v1, int v2, const Datatype &v3, void * v4, const int * v5, const int * v6, const Datatype &v7, int v8 ) const { { int err = MPI_Gatherv( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, (const int *)v5, (const int *)v6, (MPI_Datatype)(v7.the_real_datatype), v8, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Disconnect( void ) { { int err = MPI_Comm_disconnect( (MPI_Comm *) &the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allreduce( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Allreduce( (const void *)v1, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Op)(v5.the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Alltoallw( const void * v1, const int v2[], const int v3[], const Datatype v4[], void * v5, const int v6[], const int v7[], const Datatype v8[] ) const { MPI_Datatype *l4 = new MPI_Datatype[Get_size()]; MPI_Datatype *l8 = new MPI_Datatype[Get_size()]; { int i4; for (i4=0;i4Call_errhandler( err ); }}; delete[] l4; delete[] l8; } static Intercomm Join( const int v1 ) ; virtual void Alltoall( const void * v1, int v2, const Datatype &v3, void * v4, int v5, const Datatype &v6 ) const { { int err = MPI_Alltoall( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Datatype)(v6.the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_attr( int v2, void * v3 ) const { int v4; { int err = MPI_Comm_get_attr( (MPI_Comm) the_real_comm, v2, v3, &v4 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Barrier( void ) const { { int err = MPI_Barrier( (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Bcast( void * v1, int v2, const Datatype &v3, int v4 ) const { { int err = MPI_Bcast( v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_attr( int v2, const void * v3 ) { { int err = MPI_Comm_set_attr( (MPI_Comm) the_real_comm, v2, (void *)v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_name( const char * v2 ) { { int err = MPI_Comm_set_name( (MPI_Comm) the_real_comm, (const char *)v2 ); if (err) { (this)->Call_errhandler( err ); }}; } static Intercomm Get_parent( void ) ; virtual void Alltoallv( const void * v1, const int * v2, const int * v3, const Datatype &v4, void * v5, const int * v6, const int * v7, const Datatype &v8 ) const { { int err = MPI_Alltoallv( (const void *)v1, (const int *)v2, (const int *)v3, (MPI_Datatype)(v4.the_real_datatype), v5, (const int *)v6, (const int *)v7, (MPI_Datatype)(v8.the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Reduce_scatter( const void * v1, void * v2, const int v3[], const Datatype &v4, const Op &v5 ) const { { int err = MPI_Reduce_scatter( (const void *)v1, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Op)(v5.the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Scatter( const void * v1, int v2, const Datatype &v3, void * v4, int v5, const Datatype &v6, int v7 ) const { { int err = MPI_Scatter( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Datatype)(v6.the_real_datatype), v7, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Gather( const void * v1, int v2, const Datatype &v3, void * v4, int v5, const Datatype &v6, int v7 ) const { { int err = MPI_Gather( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Datatype)(v6.the_real_datatype), v7, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } static void Free_keyval( int &v1 ) { { int err = MPI_Comm_free_keyval( &v1 ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Reduce( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5, int v6 ) const { { int err = MPI_Reduce( (const void *)v1, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Op)(v5.the_real_op), v6, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allgather( const void * v1, int v2, const Datatype &v3, void * v4, int v5, const Datatype &v6 ) const { { int err = MPI_Allgather( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, (MPI_Datatype)(v6.the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Delete_attr( int v2 ) { { int err = MPI_Comm_delete_attr( (MPI_Comm) the_real_comm, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Scatterv( const void * v1, const int * v2, const int * v3, const Datatype &v4, void * v5, int v6, const Datatype &v7, int v8 ) const { { int err = MPI_Scatterv( (const void *)v1, (const int *)v2, (const int *)v3, (MPI_Datatype)(v4.the_real_datatype), v5, v6, (MPI_Datatype)(v7.the_real_datatype), v8, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Get_name( char * v2, int &v3 ) const { { int err = MPI_Comm_get_name( (MPI_Comm) the_real_comm, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allgatherv( const void * v1, int v2, const Datatype &v3, void * v4, const int * v5, const int * v6, const Datatype &v7 ) const { { int err = MPI_Allgatherv( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, (const int *)v5, (const int *)v6, (MPI_Datatype)(v7.the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Comm &Clone(void) const = 0; typedef int Copy_attr_function(const Comm& oldcomm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, bool& flag); typedef int Delete_attr_function(Comm& comm, int comm_keyval, void* attribute_val, void* extra_state); typedef void Errhandler_function(Comm &, int *, ... ); typedef Errhandler_function Errhandler_fn; static int Create_keyval( Copy_attr_function *, Delete_attr_function *, void * ); static int NULL_COPY_FN( const Comm &oldcomm __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in __attribute__((unused)), void *attr_out __attribute__((unused)), bool &flag ) { flag = 0; return 0;} static int NULL_DELETE_FN( Comm &comm __attribute__((unused)), int keyval __attribute__((unused)), void * attr __attribute__((unused)), void *ex __attribute__((unused)) ) { return 0; } static int DUP_FN( const Comm &oldcomm __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in, void *attr_out, bool &flag ) { flag = 1; *(void **)attr_out = attr_in; return 0;} static Errhandler Create_errhandler( Errhandler_function * ); virtual void Call_errhandler( int v2 ) const; virtual void Reduce_scatter_block( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Reduce_scatter_block( (const void *)v1, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Op)(v5.the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } }; class Nullcomm : public Comm { public: inline Nullcomm(MPI_Comm obj) : Comm(obj) {} inline Nullcomm(void) : Comm() {} virtual ~Nullcomm() {} Nullcomm(const Nullcomm &obj) : Comm(obj) {} Nullcomm& operator=(const Nullcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Nullcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } # 1525 "/usr/local/include/mpicxx.h" 3 virtual Nullcomm & Clone(void) const { Nullcomm *clone = new Nullcomm(); return *clone; }; }; class Intercomm : public Comm { friend class Intracomm; public: inline Intercomm(MPI_Comm obj) : Comm(obj) {} inline Intercomm(void) : Comm() {} virtual ~Intercomm() {} Intercomm(const Intercomm &obj) : Comm(obj) {} Intercomm& operator=(const Intercomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Intercomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual Intracomm Merge( bool v2 ) const; virtual Group Get_remote_group( void ) const { Group v2; { int err = MPI_Comm_remote_group( (MPI_Comm) the_real_comm, &(v2.the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual int Get_remote_size( void ) const { int v2; { int err = MPI_Comm_remote_size( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } Intercomm Dup( void ) const { Intercomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Intercomm Split( int v2, int v3 ) const { Intercomm v4; { int err = MPI_Comm_split( (MPI_Comm) the_real_comm, v2, v3, &(v4.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v4; } # 1591 "/usr/local/include/mpicxx.h" 3 virtual Intercomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Intercomm *clone = new Intercomm(ncomm); return *clone; }; }; class Intracomm : public Comm { friend class Cartcomm; friend class Graphcomm; friend class Datatype; public: inline Intracomm(MPI_Comm obj) : Comm(obj) {} inline Intracomm(void) : Comm() {} virtual ~Intracomm() {} Intracomm(const Intracomm &obj) : Comm(obj) {} Intracomm& operator=(const Intracomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Intracomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual Intercomm Create_intercomm( int v2, const Comm &v3, int v4, int v5 ) const { Intercomm v6; { int err = MPI_Intercomm_create( (MPI_Comm) the_real_comm, v2, (MPI_Comm)(v3.the_real_comm), v4, v5, &(v6.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual Intracomm Split( int v2, int v3 ) const { Intracomm v4; { int err = MPI_Comm_split( (MPI_Comm) the_real_comm, v2, v3, &(v4.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v4; } virtual Graphcomm Create_graph( int v2, const int v3[], const int v4[], bool v5 ) const; virtual Cartcomm Create_cart( int v2, const int v3[], const bool v4[], bool v5 ) const; virtual Intracomm Create( const Group &v2 ) const { Intracomm v3; { int err = MPI_Comm_create( (MPI_Comm) the_real_comm, (MPI_Group)(v2.the_real_group), &(v3.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } Intracomm Dup( void ) const { Intracomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Scan( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Scan( (const void *)v1, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Op)(v5.the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Exscan( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Exscan( (const void *)v1, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Op)(v5.the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Intercomm Accept( const char * v1, const Info &v2, int v3 ) const { Intercomm v5; { int err = MPI_Comm_accept( (const char *)v1, (MPI_Info)(v2.the_real_info), v3, (MPI_Comm) the_real_comm, &(v5.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Intercomm Connect( const char * v1, const Info &v2, int v3 ) const { Intercomm v5; { int err = MPI_Comm_connect( (const char *)v1, (MPI_Info)(v2.the_real_info), v3, (MPI_Comm) the_real_comm, &(v5.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } # 1682 "/usr/local/include/mpicxx.h" 3 virtual Intracomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Intracomm *clone = new Intracomm(ncomm); return *clone; }; Intercomm Spawn(const char* command, const char* argv[], int maxprocs, const MPI::Info& info, int root) const { Intercomm ic; { int err = MPI_Comm_spawn( (char *)command, (char **)argv, maxprocs, info.the_real_info, root, the_real_comm, &(ic.the_real_comm), (int *)0 ); if (err) { (this)->Call_errhandler( err ); }} ; return ic; } Intercomm Spawn(const char* command, const char* argv[], int maxprocs, const MPI::Info& info, int root, int array_of_errcodes[]) const { Intercomm ic; { int err = MPI_Comm_spawn( (char *)command, (char **)argv, maxprocs, info.the_real_info, root, the_real_comm, &(ic.the_real_comm), array_of_errcodes ); if (err) { (this)->Call_errhandler( err ); }} ; return ic; } Intercomm Spawn_multiple(int count, const char* array_of_commands[], const char** array_of_argv[], const int array_of_maxprocs[], const MPI::Info array_of_info[], int root) { Intercomm ic; MPI_Info *li = new MPI_Info [count]; int i; for (i=0; iCall_errhandler( err ); }} ; delete [] li; return ic; } Intercomm Spawn_multiple(int count, const char* array_of_commands[], const char** array_of_argv[], const int array_of_maxprocs[], const MPI::Info array_of_info[], int root, int array_of_errcodes[]) { Intercomm ic; MPI_Info *li = new MPI_Info [count]; int i; for (i=0; iCall_errhandler( err ); }} ; delete [] li; return ic; } }; class Grequest : public Request { public: inline Grequest(MPI_Request obj) : Request(obj) {} inline Grequest(void) : Request() {} virtual ~Grequest() {} Grequest(const Grequest &obj) : Request(obj) {} Grequest& operator=(const Grequest &obj) { the_real_request = obj.the_real_request; return *this; } bool operator== (const Grequest &obj) { return (the_real_request == obj.the_real_request); } bool operator!= (const Grequest &obj) { return (the_real_request != obj.the_real_request); } inline operator MPI_Request*() { return &the_real_request; } inline operator MPI_Request() const { return the_real_request; } Grequest& operator=(const MPI_Request& obj) { the_real_request = obj; return *this; } virtual void Complete( void ) { { int err = MPI_Grequest_complete( (MPI_Request) the_real_request ) ; if (err) MPIR_Call_world_errhand( err ); }; } typedef int Query_function( void *, Status & ); typedef int Free_function( void * ); typedef int Cancel_function( void *, bool ); Grequest Start( Query_function *query_fn, Free_function *free_fn, Cancel_function *cancel_fn, void *extra_state ); }; class Win { protected: MPI_Win the_real_win; public: inline Win(MPI_Win obj) : the_real_win(obj) {} inline Win(void) : the_real_win(((MPI_Win)0x20000000)) {} virtual ~Win() {} Win(const Win &obj) : the_real_win(obj.the_real_win){} Win& operator=(const Win &obj) { the_real_win = obj.the_real_win; return *this; } bool operator== (const Win &obj) { return (the_real_win == obj.the_real_win); } bool operator!= (const Win &obj) { return (the_real_win != obj.the_real_win); } inline operator MPI_Win*() { return &the_real_win; } inline operator MPI_Win() const { return the_real_win; } Win& operator=(const MPI_Win& obj) { the_real_win = obj; return *this; } virtual Group Get_group( void ) const { Group v2; { int err = MPI_Win_get_group( (MPI_Win) the_real_win, &(v2.the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Fence( int v1 ) const { { int err = MPI_Win_fence( v1, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Start( const Group &v1, int v2 ) const { { int err = MPI_Win_start( (MPI_Group)(v1.the_real_group), v2, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Free( void ) { { int err = MPI_Win_free( (MPI_Win *) &the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Put( const void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7 ) const { { int err = MPI_Put( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7.the_real_datatype), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Wait( void ) const { { int err = MPI_Win_wait( (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Test( void ) const { int v2; { int err = MPI_Win_test( (MPI_Win) the_real_win, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } virtual void Get( void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7 ) const { { int err = MPI_Get( v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7.the_real_datatype), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_attr( int v2, void * v3 ) const { int v4; { int err = MPI_Win_get_attr( (MPI_Win) the_real_win, v2, v3, &v4 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Set_attr( int v2, const void * v3 ) { { int err = MPI_Win_set_attr( (MPI_Win) the_real_win, v2, (void *)v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Complete( void ) const { { int err = MPI_Win_complete( (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_Win_set_errhandler( (MPI_Win) the_real_win, (MPI_Errhandler)(v2.the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_name( const char * v2 ) { { int err = MPI_Win_set_name( (MPI_Win) the_real_win, (const char *)v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Accumulate( const void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7, const Op &v8 ) const { { int err = MPI_Accumulate( (const void *)v1, v2, (MPI_Datatype)(v3.the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7.the_real_datatype), (MPI_Op)(v8.the_real_op), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } static Win Create( const void * v1, Aint v2, int v3, const Info &v4, const Intracomm &v5 ) { Win v6; { int err = MPI_Win_create( (void *)v1, v2, v3, (MPI_Info)(v4.the_real_info), (MPI_Comm)(v5.the_real_comm), &(v6.the_real_win) ); if (err) { (v5).Call_errhandler( err ); }}; return v6; } static void Free_keyval( int &v1 ) { { int err = MPI_Win_free_keyval( &v1 ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Post( const Group &v1, int v2 ) const { { int err = MPI_Win_post( (MPI_Group)(v1.the_real_group), v2, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Unlock( int v1 ) const { { int err = MPI_Win_unlock( v1, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Delete_attr( int v2 ) { { int err = MPI_Win_delete_attr( (MPI_Win) the_real_win, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Lock( int v1, int v2, int v3 ) const { { int err = MPI_Win_lock( v1, v2, v3, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_Win_get_errhandler( (MPI_Win) the_real_win, &(v2.the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Get_name( char * v2, int &v3 ) const { { int err = MPI_Win_get_name( (MPI_Win) the_real_win, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; } typedef void Errhandler_function(Win &, int *, ... ); typedef Errhandler_function Errhandler_fn; static Errhandler Create_errhandler( Errhandler_function * ); typedef int Copy_attr_function(const Win& oldwin, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, bool& flag); typedef int Delete_attr_function(Win& win, int win_keyval, void* attribute_val, void* extra_state); static int Create_keyval( Copy_attr_function *, Delete_attr_function *, void * ); static int NULL_COPY_FN( const Win &oldwin __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in __attribute__((unused)), void *attr_out __attribute__((unused)), bool &flag ) { flag = 1; return 0;} static int NULL_DELETE_FN( Win &win __attribute__((unused)), int keyval __attribute__((unused)), void * attr __attribute__((unused)), void *ex __attribute__((unused)) ) { return 0; } static int DUP_FN( const Win &oldwin __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in, void *attr_out, bool &flag ) { flag = 1; *(void **)attr_out = attr_in; return 0;} virtual void Call_errhandler( int v2 ) const; }; class File { protected: MPI_File the_real_file; public: inline File(MPI_File obj) : the_real_file(obj) {} inline File(void) : the_real_file(((MPI_File)0)) {} virtual ~File() {} File(const File &obj) : the_real_file(obj.the_real_file){} File& operator=(const File &obj) { the_real_file = obj.the_real_file; return *this; } bool operator== (const File &obj) { return (the_real_file == obj.the_real_file); } bool operator!= (const File &obj) { return (the_real_file != obj.the_real_file); } inline operator MPI_File*() { return &the_real_file; } inline operator MPI_File() const { return the_real_file; } File& operator=(const MPI_File& obj) { the_real_file = obj; return *this; } virtual Aint Get_type_extent( const Datatype &v2 ) const { MPI_Aint v3; { int err = MPI_File_get_type_extent( (MPI_File) the_real_file, (MPI_Datatype)(v2.the_real_datatype), &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual void Read_ordered_end( void * v2, Status & v3 ) { { int err = MPI_File_read_ordered_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered_end( void * v2 ) { { int err = MPI_File_read_ordered_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Seek_shared( Offset v2, int v3 ) { { int err = MPI_File_seek_shared( (MPI_File) the_real_file, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_ordered( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_ordered( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iread_shared( void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iread_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Request *)&(v5.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Info Get_info( void ) const { Info v2; { int err = MPI_File_get_info( (MPI_File) the_real_file, &(v2.the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_ordered_begin( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_ordered_begin( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_info( const Info &v2 ) { { int err = MPI_File_set_info( (MPI_File) the_real_file, (MPI_Info)(v2.the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_ordered( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_ordered( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sync( void ) { { int err = MPI_File_sync( (MPI_File) the_real_file ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_all( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_all( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_size( void ) const { MPI_Offset v2; { int err = MPI_File_get_size( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_all_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_all_end( (MPI_File) the_real_file, (const void *)v2, (MPI_Status *)&(v3.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all_end( const void * v2 ) { { int err = MPI_File_write_all_end( (MPI_File) the_real_file, (const void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } static void Delete( const char * v1, const Info &v2 ) { { int err = MPI_File_delete( (const char *)v1, (MPI_Info)(v2.the_real_info) ); if (err) { (FILE_NULL).Call_errhandler( err ); }}; } virtual void Read_ordered_begin( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_ordered_begin( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iread_at( Offset v2, void * v3, int v4, const Datatype &v5 ) { Request v6; { int err = MPI_File_iread_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Request *)&(v6.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual void Write_at_all_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_at_all_end( (MPI_File) the_real_file, (const void *)v2, (MPI_Status *)&(v3.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all_end( const void * v2 ) { { int err = MPI_File_write_at_all_end( (MPI_File) the_real_file, (const void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_position_shared( void ) const { MPI_Offset v2; { int err = MPI_File_get_position_shared( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_shared( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_shared( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_shared( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_shared( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iwrite_at( Offset v2, const void * v3, int v4, const Datatype &v5 ) { Request v6; { int err = MPI_File_iwrite_at( (MPI_File) the_real_file, (MPI_Offset)v2, (const void *)v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Request *)&(v6.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual void Get_view( Offset & v2, Datatype &v3, Datatype &v4, char * v5 ) const { { int err = MPI_File_get_view( (MPI_File) the_real_file, &v2, (MPI_Datatype *)&(v3.the_real_datatype), (MPI_Datatype *)&(v4.the_real_datatype), v5 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all_begin( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_all_begin( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_end( void * v2, Status & v3 ) { { int err = MPI_File_read_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_end( void * v2 ) { { int err = MPI_File_read_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_byte_offset( const Offset v2 ) const { MPI_Offset v3; { int err = MPI_File_get_byte_offset( (MPI_File) the_real_file, (MPI_Offset)v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual Request Iread( void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iread( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Request *)&(v5.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Read_at_all_end( void * v2, Status & v3 ) { { int err = MPI_File_read_at_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all_end( void * v2 ) { { int err = MPI_File_read_at_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at( Offset v2, const void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_write_at( (MPI_File) the_real_file, v2, (const void *)v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Status *)&(v6.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at( (MPI_File) the_real_file, v2, (const void *)v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all_begin( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at_all_begin( (MPI_File) the_real_file, v2, (const void *)v3, v4, (MPI_Datatype)(v5.the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_File_get_errhandler( (MPI_File) the_real_file, &(v2.the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual int Get_amode( void ) const { int v2; { int err = MPI_File_get_amode( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Set_atomicity( bool v2 ) { int l2; l2 = (v2 == true) ? 1 : 0; { int err = MPI_File_set_atomicity( (MPI_File) the_real_file, l2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Group Get_group( void ) const { Group v2; { int err = MPI_File_get_group( (MPI_File) the_real_file, &(v2.the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Offset Get_position( void ) const { MPI_Offset v2; { int err = MPI_File_get_position( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } static File Open( const Intracomm &v1, const char * v2, int v3, const Info &v4 ) { File v5; { int err = MPI_File_open( (MPI_Comm)(v1.the_real_comm), (const char *)v2, v3, (MPI_Info)(v4.the_real_info), &(v5.the_real_file) ); if (err) { (FILE_NULL).Call_errhandler( err ); }}; return v5; } virtual void Seek( Offset v2, int v3 ) { { int err = MPI_File_seek( (MPI_File) the_real_file, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_begin( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_all_begin( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all_begin( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at_all_begin( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5.the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_all( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_all( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Preallocate( Offset v2 ) { { int err = MPI_File_preallocate( (MPI_File) the_real_file, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all( Offset v2, void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_read_at_all( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Status *)&(v6.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at_all( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_shared( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_shared( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iwrite( const void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iwrite( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Request *)&(v5.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Request Iwrite_shared( const void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iwrite_shared( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Request *)&(v5.the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_File_set_errhandler( (MPI_File) the_real_file, (MPI_Errhandler)(v2.the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all( Offset v2, const void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_write_at_all( (MPI_File) the_real_file, v2, (const void *)v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Status *)&(v6.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at_all( (MPI_File) the_real_file, v2, (const void *)v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_size( Offset v2 ) { { int err = MPI_File_set_size( (MPI_File) the_real_file, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_view( Offset v2, const Datatype &v3, const Datatype v4, const char * v5, const Info &v6 ) { { int err = MPI_File_set_view( (MPI_File) the_real_file, v2, (MPI_Datatype)(v3.the_real_datatype), (MPI_Datatype)v4, (const char *)v5, (MPI_Info)(v6.the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at( Offset v2, void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_read_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Status *)&(v6.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Close( void ) { { int err = MPI_File_close( (MPI_File *) &the_real_file ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_ordered_end( (MPI_File) the_real_file, (const void *)v2, (MPI_Status *)&(v3.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered_end( const void * v2 ) { { int err = MPI_File_write_ordered_end( (MPI_File) the_real_file, (const void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)&(v5.the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write( (MPI_File) the_real_file, (const void *)v2, v3, (MPI_Datatype)(v4.the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_atomicity( void ) const { int v2; { int err = MPI_File_get_atomicity( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } typedef void Errhandler_function(File &, int *, ... ); typedef Errhandler_function Errhandler_fn; static Errhandler Create_errhandler( Errhandler_function * ); virtual void Call_errhandler( int v2 ) const; }; class Graphcomm : public Intracomm { public: inline Graphcomm(MPI_Comm obj) : Intracomm(obj) {} inline Graphcomm(void) : Intracomm() {} virtual ~Graphcomm() {} Graphcomm(const Graphcomm &obj) : Intracomm(obj) {} Graphcomm& operator=(const Graphcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Graphcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual void Get_dims( int * v2, int * v3 ) const { { int err = MPI_Graphdims_get( (MPI_Comm) the_real_comm, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Get_topo( int v2, int v3, int v4[], int v5[] ) const { { int err = MPI_Graph_get( (MPI_Comm) the_real_comm, v2, v3, v4, v5 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Map( int v2, const int v3[], const int v4[] ) const { int v5; { int err = MPI_Graph_map( (MPI_Comm) the_real_comm, v2, (const int *)v3, (const int *)v4, &v5 ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Get_neighbors( int v2, int v3, int v4[] ) const { { int err = MPI_Graph_neighbors( (MPI_Comm) the_real_comm, v2, v3, v4 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_neighbors_count( int v2 ) const { int v3; { int err = MPI_Graph_neighbors_count( (MPI_Comm) the_real_comm, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } Graphcomm Dup( void ) const { Graphcomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } # 2360 "/usr/local/include/mpicxx.h" 3 virtual Graphcomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Graphcomm *clone = new Graphcomm(ncomm); return *clone; }; }; class Cartcomm : public Intracomm { public: inline Cartcomm(MPI_Comm obj) : Intracomm(obj) {} inline Cartcomm(void) : Intracomm() {} virtual ~Cartcomm() {} Cartcomm(const Cartcomm &obj) : Intracomm(obj) {} Cartcomm& operator=(const Cartcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Cartcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual void Get_coords( int v2, int v3, int v4[] ) const { { int err = MPI_Cart_coords( (MPI_Comm) the_real_comm, v2, v3, v4 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_cart_rank( const int v2[] ) const { int v3; { int err = MPI_Cart_rank( (MPI_Comm) the_real_comm, (const int *)v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual int Get_dim( void ) const { int v2; { int err = MPI_Cartdim_get( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } Cartcomm Dup( void ) const { Cartcomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Get_topo( int v2, int v3[], bool v4[], int v5[] ) const { int *l4 = new int[v2]; { int err = MPI_Cart_get( (MPI_Comm) the_real_comm, v2, v3, l4, v5 ); if (err) { (this)->Call_errhandler( err ); }}; { int i4; for (i4=0;i4Call_errhandler( err ); }}; delete[] l4; return v5; } virtual Cartcomm Sub( const bool v2[] ) const { Cartcomm v3; int *l2 = new int[10]; { int i2; for (i2=0;i2<10;i2++) { l2[i2] = v2[i2] == true ? 1 : 0; } } { int err = MPI_Cart_sub( (MPI_Comm) the_real_comm, l2, &(v3.the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; delete[] l2; return v3; } virtual void Shift( int v2, int v3, int &v4, int &v5 ) const { { int err = MPI_Cart_shift( (MPI_Comm) the_real_comm, v2, v3, &v4, &v5 ); if (err) { (this)->Call_errhandler( err ); }}; } # 2475 "/usr/local/include/mpicxx.h" 3 virtual Cartcomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Cartcomm *clone = new Cartcomm(ncomm); return *clone; }; }; extern int Add_error_class( void ) ; extern void* Alloc_mem( Aint v1, const Info &v2 ) ; extern void Lookup_name( const char * v1, const Info &v2, char * v3 ) ; extern void Publish_name( const char * v1, const Info &v2, const char * v3 ) ; extern void Unpublish_name( const char * v1, const Info &v2, const char * v3 ) ; extern Aint Get_address( const void * v1 ) ; extern void Add_error_string( int v1, const char * v2 ) ; extern int Query_thread( void ) ; extern void Close_port( const char * v1 ) ; extern int Add_error_code( int v1 ) ; extern void Free_mem( void * v1 ) ; extern void Open_port( const Info &v1, char * v2 ) ; extern bool Is_finalized( void ) ; extern bool Is_thread_main( void ) ; typedef int Datarep_extent_function( const Datatype&, Aint&, void *); typedef int Datarep_conversion_function( void *, Datatype &, int, void *, Offset, void * ); extern Datatype CHAR; extern Datatype UNSIGNED_CHAR; extern Datatype BYTE; extern Datatype SHORT; extern Datatype UNSIGNED_SHORT; extern Datatype INT; extern Datatype UNSIGNED; extern Datatype LONG; extern Datatype UNSIGNED_LONG; extern Datatype FLOAT; extern Datatype DOUBLE; extern Datatype LONG_DOUBLE; extern Datatype LONG_LONG_INT; extern Datatype LONG_LONG; extern Datatype PACKED; extern Datatype LB; extern Datatype UB; extern Datatype FLOAT_INT; extern Datatype DOUBLE_INT; extern Datatype LONG_INT; extern Datatype SHORT_INT; extern Datatype LONG_DOUBLE_INT; extern Datatype REAL4; extern Datatype REAL8; extern Datatype REAL16; extern Datatype COMPLEX8; extern Datatype COMPLEX16; extern Datatype COMPLEX32; extern Datatype INTEGER1; extern Datatype INTEGER2; extern Datatype INTEGER4; extern Datatype INTEGER8; extern Datatype INTEGER16; extern Datatype WCHAR; extern Datatype SIGNED_CHAR; extern Datatype UNSIGNED_LONG_LONG; extern Datatype TWOINT; extern Datatype BOOL; extern Datatype COMPLEX; extern Datatype DOUBLE_COMPLEX; extern Datatype LONG_DOUBLE_COMPLEX; extern Datatype DATATYPE_NULL; extern Datatype INTEGER; extern Datatype REAL; extern Datatype DOUBLE_PRECISION; extern Datatype F_COMPLEX; extern Datatype F_DOUBLE_COMPLEX; extern Datatype LOGICAL; extern Datatype CHARACTER; extern Datatype TWOREAL; extern Datatype TWODOUBLE_PRECISION; extern Datatype TWOINTEGER; extern const Op MAX; extern const Op MIN; extern const Op SUM; extern const Op PROD; extern const Op LAND; extern const Op BAND; extern const Op LOR; extern const Op BOR; extern const Op LXOR; extern const Op BXOR; extern const Op MINLOC; extern const Op MAXLOC; extern const Op REPLACE; extern const Op OP_NULL; extern Intracomm COMM_SELF; extern const Group GROUP_EMPTY; extern const Nullcomm COMM_NULL; extern const Group GROUP_NULL; extern const Request REQUEST_NULL; extern const Errhandler ERRHANDLER_NULL; extern const Errhandler ERRORS_RETURN; extern const Errhandler ERRORS_ARE_FATAL; extern const Errhandler ERRORS_THROW_EXCEPTIONS; extern const Info INFO_NULL; extern const Win WIN_NULL; extern const int BSEND_OVERHEAD; extern const int KEYVAL_INVALID; extern const int CART; extern const int GRAPH; extern const int IDENT; extern const int SIMILAR; extern const int CONGRUENT; extern const int UNEQUAL; extern const int PROC_NULL; extern const int ANY_TAG; extern const int ANY_SOURCE; extern const int ROOT; extern const int TAG_UB; extern const int IO; extern const int HOST; extern const int WTIME_IS_GLOBAL; extern const int UNIVERSE_SIZE; extern const int LASTUSEDCODE; extern const int APPNUM; extern const int MAX_PROCESSOR_NAME; extern const int MAX_ERROR_STRING; extern const int MAX_PORT_NAME; extern const int MAX_OBJECT_NAME; extern const int MAX_INFO_VAL; extern const int MAX_INFO_KEY; extern const int UNDEFINED; extern const int LOCK_EXCLUSIVE; extern const int LOCK_SHARED; extern const int WIN_BASE; extern const int WIN_DISP_UNIT; extern const int WIN_SIZE; extern const int SUCCESS; extern const int ERR_BUFFER; extern const int ERR_COUNT; extern const int ERR_TYPE; extern const int ERR_TAG; extern const int ERR_COMM; extern const int ERR_RANK; extern const int ERR_REQUEST; extern const int ERR_ROOT; extern const int ERR_GROUP; extern const int ERR_OP; extern const int ERR_TOPOLOGY; extern const int ERR_DIMS; extern const int ERR_ARG; extern const int ERR_UNKNOWN; extern const int ERR_TRUNCATE; extern const int ERR_OTHER; extern const int ERR_INTERN; extern const int ERR_PENDING; extern const int ERR_IN_STATUS; extern const int ERR_LASTCODE; extern const int ERR_FILE; extern const int ERR_ACCESS; extern const int ERR_AMODE; extern const int ERR_BAD_FILE; extern const int ERR_FILE_EXISTS; extern const int ERR_FILE_IN_USE; extern const int ERR_NO_SPACE; extern const int ERR_NO_SUCH_FILE; extern const int ERR_IO; extern const int ERR_READ_ONLY; extern const int ERR_CONVERSION; extern const int ERR_DUP_DATAREP; extern const int ERR_UNSUPPORTED_DATAREP; extern const int ERR_INFO; extern const int ERR_INFO_KEY; extern const int ERR_INFO_VALUE; extern const int ERR_INFO_NOKEY; extern const int ERR_NAME; extern const int ERR_NO_MEM; extern const int ERR_NOT_SAME; extern const int ERR_PORT; extern const int ERR_QUOTA; extern const int ERR_SERVICE; extern const int ERR_SPAWN; extern const int ERR_UNSUPPORTED_OPERATION; extern const int ERR_WIN; extern const int ERR_BASE; extern const int ERR_LOCKTYPE; extern const int ERR_KEYVAL; extern const int ERR_RMA_CONFLICT; extern const int ERR_RMA_SYNC; extern const int ERR_SIZE; extern const int ERR_DISP; extern const int ERR_ASSERT; extern const int TYPECLASS_REAL; extern const int TYPECLASS_INTEGER; extern const int TYPECLASS_COMPLEX; extern const int SEEK_SET; extern const int SEEK_END; extern const int SEEK_CUR; extern const int DISTRIBUTE_BLOCK; extern const int DISTRIBUTE_CYCLIC; extern const int DISTRIBUTE_DFLT_DARG; extern const int DISTRIBUTE_NONE; extern const int ORDER_C; extern const int ORDER_FORTRAN; extern const int MAX_DATAREP_STRING; extern const MPI_Offset DISPLACEMENT_CURRENT; extern const int MODE_APPEND; extern const int MODE_CREATE; extern const int MODE_DELETE_ON_CLOSE; extern const int MODE_EXCL; extern const int MODE_RDONLY; extern const int MODE_RDWR; extern const int MODE_SEQUENTIAL; extern const int MODE_UNIQUE_OPEN; extern const int MODE_WRONLY; extern const int MODE_NOCHECK; extern const int MODE_NOPRECEDE; extern const int MODE_NOPUT; extern const int MODE_NOSTORE; extern const int MODE_NOSUCCEED; extern const int COMM_TYPE_SHARED; extern const int COMBINER_CONTIGUOUS; extern const int COMBINER_DARRAY; extern const int COMBINER_DUP; extern const int COMBINER_F90_COMPLEX; extern const int COMBINER_F90_INTEGER; extern const int COMBINER_F90_REAL; extern const int COMBINER_HINDEXED_INTEGER; extern const int COMBINER_HINDEXED; extern const int COMBINER_HVECTOR_INTEGER; extern const int COMBINER_HVECTOR; extern const int COMBINER_INDEXED_BLOCK; extern const int COMBINER_INDEXED; extern const int COMBINER_NAMED; extern const int COMBINER_RESIZED; extern const int COMBINER_STRUCT_INTEGER; extern const int COMBINER_STRUCT; extern const int COMBINER_SUBARRAY; extern const int COMBINER_VECTOR; extern const int COMBINER_HINDEXED_BLOCK; extern const int THREAD_FUNNELED; extern const int THREAD_MULTIPLE; extern const int THREAD_SERIALIZED; extern const int THREAD_SINGLE; extern const char ** const ARGV_NULL; extern const char *** const ARGVS_NULL; extern void * const BOTTOM; extern void * const IN_PLACE; extern void Init(void); extern void Init(int &, char **& ); extern int Init_thread(int); extern int Init_thread(int &, char **&, int ); extern double Wtime(void); extern double Wtick(void); } # 2232 "/usr/local/include/mpi.h" 2 3 typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int MPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int MPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int PMPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/usr/local/include'] Popping language Cxx ================================================================================ TEST configureConversion from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:217) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:217) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /tmp/petsc-F9l5hH/config.packages.MPI Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:6:10: warning: unused variable ?a? [-Wunused-variable] MPI_Fint a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:180) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:180) Check for functions added to the interface in MPI-2 Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ================================================================================ TEST configureTypes from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:237) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:237) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.types/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.types/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.types/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.types/conftest Executing: /tmp/petsc-F9l5hH/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:249) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:249) Checking for MPI Datatype handles Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.packages.MPI/conftest Executing: /tmp/petsc-F9l5hH/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-F9l5hH/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-F9l5hH/config.packages.MPI/conftest Executing: /tmp/petsc-F9l5hH/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:325) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:325) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:344) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:344) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } #ifdef __cplusplus } #endif int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.cc:(.text.startup+0x5): undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status Popping language Cxx SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:354) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:354) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:372) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:372) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" end Checking for fortran mpi_init() Checking for functions [] in library [] [] Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language FC Checking for mpi.mod Checking for functions [] in library [] [] Pushing language FC Executing: mpif90 -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: mpif90 -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:397) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:397) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:9:5: warning: ?fh? is used uninitialized in this function [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:9:5: warning: ?buf? is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:9:5: warning: ?fh? is used uninitialized in this function [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:9:5: warning: ?buf? is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:9:5: warning: ?fh? is used uninitialized in this function [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:9:5: warning: ?disp? is used uninitialized in this function [-Wuninitialized] /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:9:5: warning: ?info? is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:8:5: warning: ?info? is used uninitialized in this function [-Wuninitialized] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:7:10: warning: unused variable ?info? [-Wunused-variable] MPI_Info info; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:459) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:459) Find MPI include paths from "mpicc -show" Executing: mpicc -show stdout: gcc -I/usr/local/include -L/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -lmpi compilers: Checking arg gcc compilers: Checking arg -I/usr/local/include compilers: Found include directory: /usr/local/include compilers: Checking arg -L/usr/local/lib compilers: Checking arg -Wl,-rpath compilers: Checking arg -Wl,/usr/local/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Checking arg -lmpi ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:434) TESTING: checkMPICHorOpenMPI from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:434) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -I/tmp/petsc-F9l5hH/config.headers /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.packages.MPI/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.packages.MPI/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.packages.MPI/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.packages.MPI/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.packages.MPI/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.packages.MPI/conftest.c" 2 # 1 "/usr/local/include/mpi.h" 1 3 # 98 "/usr/local/include/mpi.h" 3 typedef int MPI_Datatype; # 281 "/usr/local/include/mpi.h" 3 typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 364 "/usr/local/include/mpi.h" 3 typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; # 396 "/usr/local/include/mpi.h" 3 typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; # 424 "/usr/local/include/mpi.h" 3 typedef int MPI_Errhandler; # 445 "/usr/local/include/mpi.h" 3 typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); # 499 "/usr/local/include/mpi.h" 3 enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18, MPI_COMBINER_HINDEXED_BLOCK = 19 }; typedef int MPI_Info; # 549 "/usr/local/include/mpi.h" 3 typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; # 568 "/usr/local/include/mpi.h" 3 typedef long long MPI_Offset; typedef struct MPI_Status { int count_lo; int count_hi_and_cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum_s; struct MPIR_T_cvar_handle_s; struct MPIR_T_pvar_handle_s; struct MPIR_T_pvar_session_s; typedef struct MPIR_T_enum_s * MPI_T_enum; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES; # 605 "/usr/local/include/mpi.h" 3 typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t; typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO } MPIR_T_bind_t; typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_CONSTANT = 60438, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t; typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIR_T_PVAR_CLASS_FIRST = 240, MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC, MPIR_T_PVAR_CLASS_LAST, MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t; # 727 "/usr/local/include/mpi.h" 3 extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; # 742 "/usr/local/include/mpi.h" 3 typedef struct { MPI_Fint count_lo; MPI_Fint count_hi_and_cancelled; MPI_Fint MPI_SOURCE; MPI_Fint MPI_TAG; MPI_Fint MPI_ERROR; } MPI_F08_Status; extern MPI_F08_Status MPIR_F08_MPI_STATUS_IGNORE_OBJ; extern MPI_F08_Status MPIR_F08_MPI_STATUSES_IGNORE_OBJ[1]; extern int MPIR_F08_MPI_IN_PLACE; extern int MPIR_F08_MPI_BOTTOM; extern MPI_F08_Status *MPI_F08_STATUS_IGNORE; extern MPI_F08_Status *MPI_F08_STATUSES_IGNORE; # 766 "/usr/local/include/mpi.h" 3 typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); # 896 "/usr/local/include/mpi.h" 3 typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); # 916 "/usr/local/include/mpi.h" 3 int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Buffer_attach(void *buffer, int size); int MPI_Buffer_detach(void *buffer_addr, int *size); int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Wait(MPI_Request *request, MPI_Status *status); int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int MPI_Request_free(MPI_Request *request); int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int MPI_Cancel(MPI_Request *request); int MPI_Test_cancelled(const MPI_Status *status, int *flag); int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Start(MPI_Request *request); int MPI_Startall(int count, MPI_Request array_of_requests[]); int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int MPI_Address(const void *location, MPI_Aint *address); int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int MPI_Type_size(MPI_Datatype datatype, int *size); int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_commit(MPI_Datatype *datatype); int MPI_Type_free(MPI_Datatype *datatype); int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int MPI_Barrier(MPI_Comm comm); int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int MPI_Op_free(MPI_Op *op); int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Group_size(MPI_Group group, int *size); int MPI_Group_rank(MPI_Group group, int *rank); int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_free(MPI_Group *group); int MPI_Comm_size(MPI_Comm comm, int *size); int MPI_Comm_rank(MPI_Comm comm, int *rank); int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int MPI_Comm_free(MPI_Comm *comm); int MPI_Comm_test_inter(MPI_Comm comm, int *flag); int MPI_Comm_remote_size(MPI_Comm comm, int *size); int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int MPI_Keyval_free(int *keyval); int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int MPI_Attr_delete(MPI_Comm comm, int keyval); int MPI_Topo_test(MPI_Comm comm, int *status); int MPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int MPI_Dims_create(int nnodes, int ndims, int dims[]); int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int MPI_Cartdim_get(MPI_Comm comm, int *ndims); int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int MPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int MPI_Get_processor_name(char *name, int *resultlen); int MPI_Get_version(int *version, int *subversion); int MPI_Get_library_version(char *version, int *resultlen); int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Errhandler_free(MPI_Errhandler *errhandler); int MPI_Error_string(int errorcode, char *string, int *resultlen); int MPI_Error_class(int errorcode, int *errorclass); double MPI_Wtime(void); double MPI_Wtick(void); int MPI_Init(int *argc, char ***argv); int MPI_Finalize(void); int MPI_Initialized(int *flag); int MPI_Abort(MPI_Comm comm, int errorcode); int MPI_Pcontrol(const int level, ...); int MPIR_Dup_fn(MPI_Comm oldcomm, int keyval, void *extra_state, void *attribute_val_in, void *attribute_val_out, int *flag); int MPI_Close_port(const char *port_name); int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_disconnect(MPI_Comm *comm); int MPI_Comm_get_parent(MPI_Comm *parent); int MPI_Comm_join(int fd, MPI_Comm *intercomm); int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int MPI_Open_port(MPI_Info info, char *port_name); int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Win_complete(MPI_Win win); int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_fence(int assert, MPI_Win win); int MPI_Win_free(MPI_Win *win); int MPI_Win_get_group(MPI_Win win, MPI_Group *group); int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); int MPI_Win_test(MPI_Win win, int *flag); int MPI_Win_unlock(int rank, MPI_Win win); int MPI_Win_wait(MPI_Win win); int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPI_Win_detach(MPI_Win win, const void *base); int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int MPI_Win_set_info(MPI_Win win, MPI_Info info); int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int MPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Win_lock_all(int assert, MPI_Win win); int MPI_Win_unlock_all(MPI_Win win); int MPI_Win_flush(int rank, MPI_Win win); int MPI_Win_flush_all(MPI_Win win); int MPI_Win_flush_local(int rank, MPI_Win win); int MPI_Win_flush_local_all(MPI_Win win); int MPI_Win_sync(MPI_Win win); int MPI_Add_error_class(int *errorclass); int MPI_Add_error_code(int errorclass, int *errorcode); int MPI_Add_error_string(int errorcode, const char *string); int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int MPI_Comm_free_keyval(int *comm_keyval); int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int MPI_File_call_errhandler(MPI_File fh, int errorcode); int MPI_Grequest_complete(MPI_Request request); int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); int MPI_Is_thread_main(int *flag); int MPI_Query_thread(int *provided); int MPI_Status_set_cancelled(MPI_Status *status, int flag); int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int MPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int MPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_free_keyval(int *type_keyval); int MPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int MPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int MPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int MPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int MPI_Win_call_errhandler(MPI_Win win, int errorcode); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int MPI_Win_delete_attr(MPI_Win win, int win_keyval); int MPI_Win_free_keyval(int *win_keyval); int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int MPI_Win_set_name(MPI_Win win, const char *win_name); int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int MPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int MPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int MPI_Finalized(int *flag); int MPI_Free_mem(void *base); int MPI_Get_address(const void *location, MPI_Aint *address); int MPI_Info_create(MPI_Info *info); int MPI_Info_delete(MPI_Info info, const char *key); int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int MPI_Info_set(MPI_Info info, const char *key, const char *value); int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int MPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int MPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int MPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int MPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int MPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int MPI_Type_create_f90_integer(int range, MPI_Datatype *newtype); int MPI_Type_create_f90_real(int precision, int range, MPI_Datatype *newtype); int MPI_Type_create_f90_complex(int precision, int range, MPI_Datatype *newtype); int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int MPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int MPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int MPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); MPI_Aint MPI_Aint_add(MPI_Aint base, MPI_Aint disp); MPI_Aint MPI_Aint_diff(MPI_Aint addr1, MPI_Aint addr2); int MPI_T_init_thread(int required, int *provided); int MPI_T_finalize(void); int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int MPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int MPI_T_cvar_get_num(int *num_cvar); int MPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int MPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int MPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int MPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int MPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int MPI_T_pvar_get_num(int *num_pvar); int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int MPI_T_pvar_session_create(MPI_T_pvar_session *session); int MPI_T_pvar_session_free(MPI_T_pvar_session *session); int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_category_get_num(int *num_cat); int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); int MPI_T_category_get_categories(int cat_index, int len, int indices[]); int MPI_T_category_changed(int *stamp); int MPI_T_cvar_get_index(const char *name, int *cvar_index); int MPI_T_pvar_get_index(const char *name, int var_class, int *pvar_index); int MPI_T_category_get_index(const char *name, int *cat_index); int MPIX_Comm_failure_ack(MPI_Comm comm); int MPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int MPIX_Comm_revoke(MPI_Comm comm); int MPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int MPIX_Comm_agree(MPI_Comm comm, int *flag); # 1561 "/usr/local/include/mpi.h" 3 int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Buffer_attach(void *buffer, int size); int PMPI_Buffer_detach(void *buffer_addr, int *size); int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Wait(MPI_Request *request, MPI_Status *status); int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int PMPI_Request_free(MPI_Request *request); int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int PMPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int PMPI_Cancel(MPI_Request *request); int PMPI_Test_cancelled(const MPI_Status *status, int *flag); int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Start(MPI_Request *request); int PMPI_Startall(int count, MPI_Request array_of_requests[]); int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int PMPI_Address(const void *location, MPI_Aint *address); int PMPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int PMPI_Type_size(MPI_Datatype datatype, int *size); int PMPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_commit(MPI_Datatype *datatype); int PMPI_Type_free(MPI_Datatype *datatype); int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int PMPI_Barrier(MPI_Comm comm); int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int PMPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int PMPI_Op_free(MPI_Op *op); int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Group_size(MPI_Group group, int *size); int PMPI_Group_rank(MPI_Group group, int *rank); int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_free(MPI_Group *group); int PMPI_Comm_size(MPI_Comm comm, int *size); int PMPI_Comm_rank(MPI_Comm comm, int *rank); int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int PMPI_Comm_free(MPI_Comm *comm); int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); int PMPI_Comm_remote_size(MPI_Comm comm, int *size); int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int PMPI_Keyval_free(int *keyval); int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int PMPI_Attr_delete(MPI_Comm comm, int keyval); int PMPI_Topo_test(MPI_Comm comm, int *status); int PMPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int PMPI_Dims_create(int nnodes, int ndims, int dims[]); int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int PMPI_Get_processor_name(char *name, int *resultlen); int PMPI_Get_version(int *version, int *subversion); int PMPI_Get_library_version(char *version, int *resultlen); int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Errhandler_free(MPI_Errhandler *errhandler); int PMPI_Error_string(int errorcode, char *string, int *resultlen); int PMPI_Error_class(int errorcode, int *errorclass); double PMPI_Wtime(void); double PMPI_Wtick(void); int PMPI_Init(int *argc, char ***argv); int PMPI_Finalize(void); int PMPI_Initialized(int *flag); int PMPI_Abort(MPI_Comm comm, int errorcode); int PMPI_Pcontrol(const int level, ...); int PMPI_Close_port(const char *port_name); int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_disconnect(MPI_Comm *comm); int PMPI_Comm_get_parent(MPI_Comm *parent); int PMPI_Comm_join(int fd, MPI_Comm *intercomm); int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int PMPI_Open_port(MPI_Info info, char *port_name); int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Win_complete(MPI_Win win); int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_fence(int assert, MPI_Win win); int PMPI_Win_free(MPI_Win *win); int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_test(MPI_Win win, int *flag); int PMPI_Win_unlock(int rank, MPI_Win win); int PMPI_Win_wait(MPI_Win win); int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPI_Win_detach(MPI_Win win, const void *base); int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int PMPI_Win_set_info(MPI_Win win, MPI_Info info); int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int PMPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Win_lock_all(int assert, MPI_Win win); int PMPI_Win_unlock_all(MPI_Win win); int PMPI_Win_flush(int rank, MPI_Win win); int PMPI_Win_flush_all(MPI_Win win); int PMPI_Win_flush_local(int rank, MPI_Win win); int PMPI_Win_flush_local_all(MPI_Win win); int PMPI_Win_sync(MPI_Win win); int PMPI_Add_error_class(int *errorclass); int PMPI_Add_error_code(int errorclass, int *errorcode); int PMPI_Add_error_string(int errorcode, const char *string); int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int PMPI_Comm_free_keyval(int *comm_keyval); int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int PMPI_File_call_errhandler(MPI_File fh, int errorcode); int PMPI_Grequest_complete(MPI_Request request); int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); int PMPI_Is_thread_main(int *flag); int PMPI_Query_thread(int *provided); int PMPI_Status_set_cancelled(MPI_Status *status, int flag); int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int PMPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int PMPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_free_keyval(int *type_keyval); int PMPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int PMPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int PMPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int PMPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int PMPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int PMPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); int PMPI_Win_free_keyval(int *win_keyval); int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int PMPI_Win_set_name(MPI_Win win, const char *win_name); int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int PMPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int PMPI_Finalized(int *flag); int PMPI_Free_mem(void *base); int PMPI_Get_address(const void *location, MPI_Aint *address); int PMPI_Info_create(MPI_Info *info); int PMPI_Info_delete(MPI_Info info, const char *key); int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int PMPI_Info_set(MPI_Info info, const char *key, const char *value); int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int PMPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int PMPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int PMPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int PMPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int PMPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int PMPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int PMPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int PMPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int PMPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); MPI_Aint PMPI_Aint_add(MPI_Aint base, MPI_Aint disp); MPI_Aint PMPI_Aint_diff(MPI_Aint addr1, MPI_Aint addr2); int PMPI_T_init_thread(int required, int *provided); int PMPI_T_finalize(void); int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int PMPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int PMPI_T_cvar_get_num(int *num_cvar); int PMPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int PMPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int PMPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int PMPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int PMPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int PMPI_T_pvar_get_num(int *num_pvar); int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_category_get_num(int *num_cat); int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); int PMPI_T_category_changed(int *stamp); int PMPI_T_cvar_get_index(const char *name, int *cvar_index); int PMPI_T_pvar_get_index(const char *name, int var_class, int *pvar_index); int PMPI_T_category_get_index(const char *name, int *cat_index); int PMPIX_Comm_failure_ack(MPI_Comm comm); int PMPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int PMPIX_Comm_revoke(MPI_Comm comm); int PMPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int PMPIX_Comm_agree(MPI_Comm comm, int *flag); # 2215 "/usr/local/include/mpi.h" 3 # 1 "/usr/local/include/mpio.h" 1 3 # 13 "/usr/local/include/mpio.h" 3 # 1 "/usr/local/include/mpi.h" 1 3 # 14 "/usr/local/include/mpio.h" 2 3 # 123 "/usr/local/include/mpio.h" 3 int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); int MPI_File_close(MPI_File *fh); int MPI_File_delete(const char *filename, MPI_Info info); int MPI_File_set_size(MPI_File fh, MPI_Offset size); int MPI_File_preallocate(MPI_File fh, MPI_Offset size); int MPI_File_get_size(MPI_File fh, MPI_Offset *size); int MPI_File_get_group(MPI_File fh, MPI_Group *group); int MPI_File_get_amode(MPI_File fh, int *amode); int MPI_File_set_info(MPI_File fh, MPI_Info info); int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); int MPI_File_set_atomicity(MPI_File fh, int flag); int MPI_File_get_atomicity(MPI_File fh, int *flag); int MPI_File_sync(MPI_File fh); # 242 "/usr/local/include/mpio.h" 3 int MPI_File_iread_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; # 282 "/usr/local/include/mpio.h" 3 MPI_File MPI_File_f2c(MPI_Fint file); MPI_Fint MPI_File_c2f(MPI_File file); # 343 "/usr/local/include/mpio.h" 3 int PMPI_File_open(MPI_Comm, const char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete(const char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, const char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, const void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, const void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep(const char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 471 "/usr/local/include/mpio.h" 3 int PMPI_File_iread_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iwrite_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iwrite_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; # 495 "/usr/local/include/mpio.h" 3 MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 2216 "/usr/local/include/mpi.h" 2 3 # 2237 "/usr/local/include/mpi.h" 3 typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int MPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int MPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int PMPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); # 4 "/tmp/petsc-F9l5hH/config.packages.MPI/conftest.c" 2 int mpich_ver = 30200300; Defined "HAVE_MPICH_NUMVERSION" to "30200300" Checking for functions [MPI_Alltoallw] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Alltoallw();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Win_create();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } #ifdef __cplusplus } #endif int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.cc:(.text.startup+0x5): undefined reference to `MPIX_Iallreduce' collect2: error: ld returned 1 exit status Popping language Cxx Checking for functions [MPIX_Ibarrier] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } #ifdef __cplusplus } #endif int main() { _check_MPIX_Ibarrier();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.cc:(.text.startup+0x5): undefined reference to `MPIX_Ibarrier' collect2: error: ld returned 1 exit status Popping language Cxx Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 -I/usr/local/include /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:6:5: warning: unused variable ?combiner? [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 -I/usr/local/include /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c:6:5: warning: unused variable ?combiner? [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } #ifdef __cplusplus } #endif int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.cc:(.text.startup+0x5): undefined reference to `MPIDI_CH3I_sock_set' collect2: error: ld returned 1 exit status Popping language Cxx Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } #ifdef __cplusplus } #endif int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.cc:(.text.startup+0x5): undefined reference to `MPIDI_CH3I_sock_fixed_nbc_progress' collect2: error: ld returned 1 exit status Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:130) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:130) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/MPI.py:143) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:143) Checking for mpiexec Pushing language C Popping language C Checking for program /usr/local/bin/mpiexec...found Defined make macro "MPIEXEC" to "/usr/local/bin/mpiexec" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 -I/usr/local/include /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /bin/ar cr /tmp/petsc-F9l5hH/config.packages.MPI/libconftest.a /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o ; /bin/ranlib /tmp/petsc-F9l5hH/config.packages.MPI/libconftest.a Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 -I/usr/local/include /tmp/petsc-F9l5hH/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /bin/ar cr /tmp/petsc-F9l5hH/config.packages.MPI/libconftest.a /tmp/petsc-F9l5hH/config.packages.MPI/conftest.o ; /bin/ranlib /tmp/petsc-F9l5hH/config.packages.MPI/libconftest.a Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/petsc-F9l5hH/config.libraries/lib1.a", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/petsc-F9l5hH/config.libraries/lib2.a", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl -ldl Testing executable /tmp/petsc-F9l5hH/config.libraries/conftest to see if it can be run Executing: /usr/local/bin/mpiexec /tmp/petsc-F9l5hH/config.libraries/conftest Executing: /usr/local/bin/mpiexec /tmp/petsc-F9l5hH/config.libraries/conftest ERROR while running executable: Could not execute "/usr/local/bin/mpiexec /tmp/petsc-F9l5hH/config.libraries/conftest": Could not open lib1.so: /tmp/petsc-F9l5hH/config.libraries/lib1.a: invalid ELF header Library was not shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.pthread(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/pthread.py:19) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:19) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char pthread_create(); static void _check_pthread_create() { pthread_create(); } #ifdef __cplusplus } #endif int main() { _check_pthread_create();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Popping language Cxx Checking for headers Compiler specific search PTHREAD: ['/usr/local/include'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: mpic++ -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers -I/usr/local/include /tmp/petsc-F9l5hH/config.headers/conftest.cc stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 21 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 23 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 28 "/usr/include/sched.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 4 # 72 "/usr/include/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; extern "C" { extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) throw (); extern int unshare (int __flags) throw (); extern int sched_getcpu (void) throw (); extern int setns (int __fd, int __nstype) throw (); } struct __sched_param { int __sched_priority; }; # 118 "/usr/include/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 201 "/usr/include/bits/sched.h" 3 4 extern "C" { extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) throw (); extern cpu_set_t *__sched_cpualloc (size_t __count) throw () ; extern void __sched_cpufree (cpu_set_t *__set) throw (); } # 44 "/usr/include/sched.h" 2 3 4 extern "C" { extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) throw (); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) throw (); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) throw (); extern int sched_getscheduler (__pid_t __pid) throw (); extern int sched_yield (void) throw (); extern int sched_get_priority_max (int __algorithm) throw (); extern int sched_get_priority_min (int __algorithm) throw (); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) throw (); # 118 "/usr/include/sched.h" 3 4 extern int sched_setaffinity (__pid_t __pid, size_t __cpusetsize, const cpu_set_t *__cpuset) throw (); extern int sched_getaffinity (__pid_t __pid, size_t __cpusetsize, cpu_set_t *__cpuset) throw (); } # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 extern "C" { # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 86 "/usr/include/bits/time.h" 3 4 # 1 "/usr/include/bits/timex.h" 1 3 4 # 25 "/usr/include/bits/timex.h" 3 4 struct timex { unsigned int modes; __syscall_slong_t offset; __syscall_slong_t freq; __syscall_slong_t maxerror; __syscall_slong_t esterror; int status; __syscall_slong_t constant; __syscall_slong_t precision; __syscall_slong_t tolerance; struct timeval time; __syscall_slong_t tick; __syscall_slong_t ppsfreq; __syscall_slong_t jitter; int shift; __syscall_slong_t stabil; __syscall_slong_t jitcnt; __syscall_slong_t calcnt; __syscall_slong_t errcnt; __syscall_slong_t stbcnt; int tai; int :32; int :32; int :32; int :32; int :32; int :32; int :32; int :32; int :32; int :32; int :32; }; # 87 "/usr/include/bits/time.h" 2 3 4 extern "C" { extern int clock_adjtime (__clockid_t __clock_id, struct timex *__utx) throw (); } # 42 "/usr/include/time.h" 2 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) throw (); extern time_t time (time_t *__timer) throw (); extern double difftime (time_t __time1, time_t __time0) throw () __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) throw (); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) throw (); extern char *strptime (const char *__restrict __s, const char *__restrict __fmt, struct tm *__tp) throw (); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) throw (); extern char *strptime_l (const char *__restrict __s, const char *__restrict __fmt, struct tm *__tp, __locale_t __loc) throw (); extern struct tm *gmtime (const time_t *__timer) throw (); extern struct tm *localtime (const time_t *__timer) throw (); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) throw (); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) throw (); extern char *asctime (const struct tm *__tp) throw (); extern char *ctime (const time_t *__timer) throw (); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) throw (); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) throw (); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) throw (); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) throw (); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) throw (); extern time_t timelocal (struct tm *__tp) throw (); extern int dysize (int __year) throw () __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) throw (); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) throw (); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) throw (); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) throw (); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) throw (); extern int timer_delete (timer_t __timerid) throw (); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) throw (); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) throw (); extern int timer_getoverrun (timer_t __timerid) throw (); extern int timespec_get (struct timespec *__ts, int __base) throw () __attribute__ ((__nonnull__ (1))); # 403 "/usr/include/time.h" 3 4 extern int getdate_err; # 412 "/usr/include/time.h" 3 4 extern struct tm *getdate (const char *__string); # 426 "/usr/include/time.h" 3 4 extern int getdate_r (const char *__restrict __string, struct tm *__restrict __resbufp); } # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/setjmp.h" 1 3 4 # 26 "/usr/include/bits/setjmp.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 28 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL , PTHREAD_MUTEX_FAST_NP = PTHREAD_MUTEX_TIMED_NP }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 116 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 157 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 192 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 230 "/usr/include/pthread.h" 3 4 extern "C" { extern int pthread_create (pthread_t *__restrict __newthread, const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) throw () __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); extern int pthread_tryjoin_np (pthread_t __th, void **__thread_return) throw (); extern int pthread_timedjoin_np (pthread_t __th, void **__thread_return, const struct timespec *__abstime); extern int pthread_detach (pthread_t __th) throw (); extern pthread_t pthread_self (void) throw () __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) throw () __attribute__ ((__const__)); extern int pthread_attr_init (pthread_attr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (const pthread_attr_t *__attr, int *__detachstate) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (const pthread_attr_t *__attr, size_t *__guardsize) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, const struct sched_param *__restrict __param) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (const pthread_attr_t *__restrict __attr, int *__restrict __policy) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (const pthread_attr_t *__restrict __attr, int *__restrict __inherit) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (const pthread_attr_t *__restrict __attr, int *__restrict __scope) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) throw () __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) throw () __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) throw () __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_setaffinity_np (pthread_attr_t *__attr, size_t __cpusetsize, const cpu_set_t *__cpuset) throw () __attribute__ ((__nonnull__ (1, 3))); extern int pthread_attr_getaffinity_np (const pthread_attr_t *__attr, size_t __cpusetsize, cpu_set_t *__cpuset) throw () __attribute__ ((__nonnull__ (1, 3))); extern int pthread_getattr_default_np (pthread_attr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_setattr_default_np (const pthread_attr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_getattr_np (pthread_t __th, pthread_attr_t *__attr) throw () __attribute__ ((__nonnull__ (2))); extern int pthread_setschedparam (pthread_t __target_thread, int __policy, const struct sched_param *__param) throw () __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) throw () __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) throw (); extern int pthread_getname_np (pthread_t __target_thread, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int pthread_setname_np (pthread_t __target_thread, const char *__name) throw () __attribute__ ((__nonnull__ (2))); extern int pthread_getconcurrency (void) throw (); extern int pthread_setconcurrency (int __level) throw (); extern int pthread_yield (void) throw (); extern int pthread_setaffinity_np (pthread_t __th, size_t __cpusetsize, const cpu_set_t *__cpuset) throw () __attribute__ ((__nonnull__ (3))); extern int pthread_getaffinity_np (pthread_t __th, size_t __cpusetsize, cpu_set_t *__cpuset) throw () __attribute__ ((__nonnull__ (3))); # 496 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 508 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 542 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; class __pthread_cleanup_class { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; public: __pthread_cleanup_class (void (*__fct) (void *), void *__arg) : __cancel_routine (__fct), __cancel_arg (__arg), __do_it (1) { } ~__pthread_cleanup_class () { if (__do_it) __cancel_routine (__cancel_arg); } void __setdoit (int __newval) { __do_it = __newval; } void __defer () { pthread_setcanceltype (PTHREAD_CANCEL_DEFERRED, &__cancel_type); } void __restore () const { pthread_setcanceltype (__cancel_type, 0); } }; # 744 "/usr/include/pthread.h" 3 4 struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) throw (); extern int pthread_mutex_init (pthread_mutex_t *__mutex, const pthread_mutexattr_t *__mutexattr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) throw () __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_consistent_np (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); # 808 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (const pthread_mutexattr_t *__attr, int *__robustness) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_getrobust_np (const pthread_mutexattr_t *__attr, int *__robustness) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_setrobust_np (pthread_mutexattr_t *__attr, int __robustness) throw () __attribute__ ((__nonnull__ (1))); # 890 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, const pthread_rwlockattr_t *__restrict __attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, const pthread_condattr_t *__restrict __cond_attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 1002 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) throw () __attribute__ ((__nonnull__ (1))); # 1046 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, const pthread_barrierattr_t *__restrict __attr, unsigned int __count) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) throw () __attribute__ ((__nonnull__ (1))); # 1113 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) throw (); extern void *pthread_getspecific (pthread_key_t __key) throw (); extern int pthread_setspecific (pthread_key_t __key, const void *__pointer) throw () ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) throw () __attribute__ ((__nonnull__ (2))); # 1147 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) throw (); # 1161 "/usr/include/pthread.h" 3 4 } # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in ['/usr/local/include'] Popping language Cxx All intermediate test results are stored in /tmp/petsc-F9l5hH/config.packages.pthread Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.pthread/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.packages.pthread -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.pthread/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.pthread/conftest.c:6:20: warning: unused variable ?a? [-Wunused-variable] pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.pthread/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -I/tmp/petsc-F9l5hH/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-F9l5hH/config.packages.pthread/conftest.c: In function ?main?: /tmp/petsc-F9l5hH/config.packages.pthread/conftest.c:6:12: warning: unused variable ?a? [-Wunused-variable] cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Executing: mpicc -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.packages.pthread /tmp/petsc-F9l5hH/config.packages.pthread/conftest.c stdout: # 1 "/tmp/petsc-F9l5hH/config.packages.pthread/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.packages.pthread/conftest.c" # 1 "/tmp/petsc-F9l5hH/config.packages.pthread/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.packages.pthread/conftest.c" 2 # 1 "/tmp/petsc-F9l5hH/config.packages.pthread/conffix.h" 1 # 3 "/tmp/petsc-F9l5hH/config.packages.pthread/conftest.c" 2 # 1 "/usr/include/sys/sysctl.h" 1 3 4 # 21 "/usr/include/sys/sysctl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 24 "/usr/include/sys/sysctl.h" 2 3 4 # 43 "/usr/include/sys/sysctl.h" 3 4 # 1 "/usr/include/linux/sysctl.h" 1 3 4 # 25 "/usr/include/linux/sysctl.h" 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 26 "/usr/include/linux/sysctl.h" 2 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 27 "/usr/include/linux/sysctl.h" 2 3 4 struct completion; struct __sysctl_args { int *name; int nlen; void *oldval; size_t *oldlenp; void *newval; size_t newlen; unsigned long __unused[4]; }; enum { CTL_KERN=1, CTL_VM=2, CTL_NET=3, CTL_PROC=4, CTL_FS=5, CTL_DEBUG=6, CTL_DEV=7, CTL_BUS=8, CTL_ABI=9, CTL_CPU=10, CTL_ARLAN=254, CTL_S390DBF=5677, CTL_SUNRPC=7249, CTL_PM=9899, CTL_FRV=9898, }; enum { CTL_BUS_ISA=1 }; enum { INOTIFY_MAX_USER_INSTANCES=1, INOTIFY_MAX_USER_WATCHES=2, INOTIFY_MAX_QUEUED_EVENTS=3 }; enum { KERN_OSTYPE=1, KERN_OSRELEASE=2, KERN_OSREV=3, KERN_VERSION=4, KERN_SECUREMASK=5, KERN_PROF=6, KERN_NODENAME=7, KERN_DOMAINNAME=8, KERN_PANIC=15, KERN_REALROOTDEV=16, KERN_SPARC_REBOOT=21, KERN_CTLALTDEL=22, KERN_PRINTK=23, KERN_NAMETRANS=24, KERN_PPC_HTABRECLAIM=25, KERN_PPC_ZEROPAGED=26, KERN_PPC_POWERSAVE_NAP=27, KERN_MODPROBE=28, KERN_SG_BIG_BUFF=29, KERN_ACCT=30, KERN_PPC_L2CR=31, KERN_RTSIGNR=32, KERN_RTSIGMAX=33, KERN_SHMMAX=34, KERN_MSGMAX=35, KERN_MSGMNB=36, KERN_MSGPOOL=37, KERN_SYSRQ=38, KERN_MAX_THREADS=39, KERN_RANDOM=40, KERN_SHMALL=41, KERN_MSGMNI=42, KERN_SEM=43, KERN_SPARC_STOP_A=44, KERN_SHMMNI=45, KERN_OVERFLOWUID=46, KERN_OVERFLOWGID=47, KERN_SHMPATH=48, KERN_HOTPLUG=49, KERN_IEEE_EMULATION_WARNINGS=50, KERN_S390_USER_DEBUG_LOGGING=51, KERN_CORE_USES_PID=52, KERN_TAINTED=53, KERN_CADPID=54, KERN_PIDMAX=55, KERN_CORE_PATTERN=56, KERN_PANIC_ON_OOPS=57, KERN_HPPA_PWRSW=58, KERN_HPPA_UNALIGNED=59, KERN_PRINTK_RATELIMIT=60, KERN_PRINTK_RATELIMIT_BURST=61, KERN_PTY=62, KERN_NGROUPS_MAX=63, KERN_SPARC_SCONS_PWROFF=64, KERN_HZ_TIMER=65, KERN_UNKNOWN_NMI_PANIC=66, KERN_BOOTLOADER_TYPE=67, KERN_RANDOMIZE=68, KERN_SETUID_DUMPABLE=69, KERN_SPIN_RETRY=70, KERN_ACPI_VIDEO_FLAGS=71, KERN_IA64_UNALIGNED=72, KERN_COMPAT_LOG=73, KERN_MAX_LOCK_DEPTH=74, KERN_NMI_WATCHDOG=75, KERN_PANIC_ON_NMI=76, KERN_PANIC_ON_WARN=77, }; enum { VM_UNUSED1=1, VM_UNUSED2=2, VM_UNUSED3=3, VM_UNUSED4=4, VM_OVERCOMMIT_MEMORY=5, VM_UNUSED5=6, VM_UNUSED7=7, VM_UNUSED8=8, VM_UNUSED9=9, VM_PAGE_CLUSTER=10, VM_DIRTY_BACKGROUND=11, VM_DIRTY_RATIO=12, VM_DIRTY_WB_CS=13, VM_DIRTY_EXPIRE_CS=14, VM_NR_PDFLUSH_THREADS=15, VM_OVERCOMMIT_RATIO=16, VM_PAGEBUF=17, VM_HUGETLB_PAGES=18, VM_SWAPPINESS=19, VM_LOWMEM_RESERVE_RATIO=20, VM_MIN_FREE_KBYTES=21, VM_MAX_MAP_COUNT=22, VM_LAPTOP_MODE=23, VM_BLOCK_DUMP=24, VM_HUGETLB_GROUP=25, VM_VFS_CACHE_PRESSURE=26, VM_LEGACY_VA_LAYOUT=27, VM_SWAP_TOKEN_TIMEOUT=28, VM_DROP_PAGECACHE=29, VM_PERCPU_PAGELIST_FRACTION=30, VM_ZONE_RECLAIM_MODE=31, VM_MIN_UNMAPPED=32, VM_PANIC_ON_OOM=33, VM_VDSO_ENABLED=34, VM_MIN_SLAB=35, }; enum { NET_CORE=1, NET_ETHER=2, NET_802=3, NET_UNIX=4, NET_IPV4=5, NET_IPX=6, NET_ATALK=7, NET_NETROM=8, NET_AX25=9, NET_BRIDGE=10, NET_ROSE=11, NET_IPV6=12, NET_X25=13, NET_TR=14, NET_DECNET=15, NET_ECONET=16, NET_SCTP=17, NET_LLC=18, NET_NETFILTER=19, NET_DCCP=20, NET_IRDA=412, }; enum { RANDOM_POOLSIZE=1, RANDOM_ENTROPY_COUNT=2, RANDOM_READ_THRESH=3, RANDOM_WRITE_THRESH=4, RANDOM_BOOT_ID=5, RANDOM_UUID=6 }; enum { PTY_MAX=1, PTY_NR=2 }; enum { BUS_ISA_MEM_BASE=1, BUS_ISA_PORT_BASE=2, BUS_ISA_PORT_SHIFT=3 }; enum { NET_CORE_WMEM_MAX=1, NET_CORE_RMEM_MAX=2, NET_CORE_WMEM_DEFAULT=3, NET_CORE_RMEM_DEFAULT=4, NET_CORE_MAX_BACKLOG=6, NET_CORE_FASTROUTE=7, NET_CORE_MSG_COST=8, NET_CORE_MSG_BURST=9, NET_CORE_OPTMEM_MAX=10, NET_CORE_HOT_LIST_LENGTH=11, NET_CORE_DIVERT_VERSION=12, NET_CORE_NO_CONG_THRESH=13, NET_CORE_NO_CONG=14, NET_CORE_LO_CONG=15, NET_CORE_MOD_CONG=16, NET_CORE_DEV_WEIGHT=17, NET_CORE_SOMAXCONN=18, NET_CORE_BUDGET=19, NET_CORE_AEVENT_ETIME=20, NET_CORE_AEVENT_RSEQTH=21, NET_CORE_WARNINGS=22, }; enum { NET_UNIX_DESTROY_DELAY=1, NET_UNIX_DELETE_DELAY=2, NET_UNIX_MAX_DGRAM_QLEN=3, }; enum { NET_NF_CONNTRACK_MAX=1, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_NF_CONNTRACK_UDP_TIMEOUT=10, NET_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_NF_CONNTRACK_BUCKETS=14, NET_NF_CONNTRACK_LOG_INVALID=15, NET_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_NF_CONNTRACK_TCP_LOOSE=17, NET_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_NF_CONNTRACK_COUNT=27, NET_NF_CONNTRACK_ICMPV6_TIMEOUT=28, NET_NF_CONNTRACK_FRAG6_TIMEOUT=29, NET_NF_CONNTRACK_FRAG6_LOW_THRESH=30, NET_NF_CONNTRACK_FRAG6_HIGH_THRESH=31, NET_NF_CONNTRACK_CHECKSUM=32, }; enum { NET_IPV4_FORWARD=8, NET_IPV4_DYNADDR=9, NET_IPV4_CONF=16, NET_IPV4_NEIGH=17, NET_IPV4_ROUTE=18, NET_IPV4_FIB_HASH=19, NET_IPV4_NETFILTER=20, NET_IPV4_TCP_TIMESTAMPS=33, NET_IPV4_TCP_WINDOW_SCALING=34, NET_IPV4_TCP_SACK=35, NET_IPV4_TCP_RETRANS_COLLAPSE=36, NET_IPV4_DEFAULT_TTL=37, NET_IPV4_AUTOCONFIG=38, NET_IPV4_NO_PMTU_DISC=39, NET_IPV4_TCP_SYN_RETRIES=40, NET_IPV4_IPFRAG_HIGH_THRESH=41, NET_IPV4_IPFRAG_LOW_THRESH=42, NET_IPV4_IPFRAG_TIME=43, NET_IPV4_TCP_MAX_KA_PROBES=44, NET_IPV4_TCP_KEEPALIVE_TIME=45, NET_IPV4_TCP_KEEPALIVE_PROBES=46, NET_IPV4_TCP_RETRIES1=47, NET_IPV4_TCP_RETRIES2=48, NET_IPV4_TCP_FIN_TIMEOUT=49, NET_IPV4_IP_MASQ_DEBUG=50, NET_TCP_SYNCOOKIES=51, NET_TCP_STDURG=52, NET_TCP_RFC1337=53, NET_TCP_SYN_TAILDROP=54, NET_TCP_MAX_SYN_BACKLOG=55, NET_IPV4_LOCAL_PORT_RANGE=56, NET_IPV4_ICMP_ECHO_IGNORE_ALL=57, NET_IPV4_ICMP_ECHO_IGNORE_BROADCASTS=58, NET_IPV4_ICMP_SOURCEQUENCH_RATE=59, NET_IPV4_ICMP_DESTUNREACH_RATE=60, NET_IPV4_ICMP_TIMEEXCEED_RATE=61, NET_IPV4_ICMP_PARAMPROB_RATE=62, NET_IPV4_ICMP_ECHOREPLY_RATE=63, NET_IPV4_ICMP_IGNORE_BOGUS_ERROR_RESPONSES=64, NET_IPV4_IGMP_MAX_MEMBERSHIPS=65, NET_TCP_TW_RECYCLE=66, NET_IPV4_ALWAYS_DEFRAG=67, NET_IPV4_TCP_KEEPALIVE_INTVL=68, NET_IPV4_INET_PEER_THRESHOLD=69, NET_IPV4_INET_PEER_MINTTL=70, NET_IPV4_INET_PEER_MAXTTL=71, NET_IPV4_INET_PEER_GC_MINTIME=72, NET_IPV4_INET_PEER_GC_MAXTIME=73, NET_TCP_ORPHAN_RETRIES=74, NET_TCP_ABORT_ON_OVERFLOW=75, NET_TCP_SYNACK_RETRIES=76, NET_TCP_MAX_ORPHANS=77, NET_TCP_MAX_TW_BUCKETS=78, NET_TCP_FACK=79, NET_TCP_REORDERING=80, NET_TCP_ECN=81, NET_TCP_DSACK=82, NET_TCP_MEM=83, NET_TCP_WMEM=84, NET_TCP_RMEM=85, NET_TCP_APP_WIN=86, NET_TCP_ADV_WIN_SCALE=87, NET_IPV4_NONLOCAL_BIND=88, NET_IPV4_ICMP_RATELIMIT=89, NET_IPV4_ICMP_RATEMASK=90, NET_TCP_TW_REUSE=91, NET_TCP_FRTO=92, NET_TCP_LOW_LATENCY=93, NET_IPV4_IPFRAG_SECRET_INTERVAL=94, NET_IPV4_IGMP_MAX_MSF=96, NET_TCP_NO_METRICS_SAVE=97, NET_TCP_DEFAULT_WIN_SCALE=105, NET_TCP_MODERATE_RCVBUF=106, NET_TCP_TSO_WIN_DIVISOR=107, NET_TCP_BIC_BETA=108, NET_IPV4_ICMP_ERRORS_USE_INBOUND_IFADDR=109, NET_TCP_CONG_CONTROL=110, NET_TCP_ABC=111, NET_IPV4_IPFRAG_MAX_DIST=112, NET_TCP_MTU_PROBING=113, NET_TCP_BASE_MSS=114, NET_IPV4_TCP_WORKAROUND_SIGNED_WINDOWS=115, NET_TCP_DMA_COPYBREAK=116, NET_TCP_SLOW_START_AFTER_IDLE=117, NET_CIPSOV4_CACHE_ENABLE=118, NET_CIPSOV4_CACHE_BUCKET_SIZE=119, NET_CIPSOV4_RBM_OPTFMT=120, NET_CIPSOV4_RBM_STRICTVALID=121, NET_TCP_AVAIL_CONG_CONTROL=122, NET_TCP_ALLOWED_CONG_CONTROL=123, NET_TCP_MAX_SSTHRESH=124, NET_TCP_FRTO_RESPONSE=125, }; enum { NET_IPV4_ROUTE_FLUSH=1, NET_IPV4_ROUTE_MIN_DELAY=2, NET_IPV4_ROUTE_MAX_DELAY=3, NET_IPV4_ROUTE_GC_THRESH=4, NET_IPV4_ROUTE_MAX_SIZE=5, NET_IPV4_ROUTE_GC_MIN_INTERVAL=6, NET_IPV4_ROUTE_GC_TIMEOUT=7, NET_IPV4_ROUTE_GC_INTERVAL=8, NET_IPV4_ROUTE_REDIRECT_LOAD=9, NET_IPV4_ROUTE_REDIRECT_NUMBER=10, NET_IPV4_ROUTE_REDIRECT_SILENCE=11, NET_IPV4_ROUTE_ERROR_COST=12, NET_IPV4_ROUTE_ERROR_BURST=13, NET_IPV4_ROUTE_GC_ELASTICITY=14, NET_IPV4_ROUTE_MTU_EXPIRES=15, NET_IPV4_ROUTE_MIN_PMTU=16, NET_IPV4_ROUTE_MIN_ADVMSS=17, NET_IPV4_ROUTE_SECRET_INTERVAL=18, NET_IPV4_ROUTE_GC_MIN_INTERVAL_MS=19, }; enum { NET_PROTO_CONF_ALL=-2, NET_PROTO_CONF_DEFAULT=-3 }; enum { NET_IPV4_CONF_FORWARDING=1, NET_IPV4_CONF_MC_FORWARDING=2, NET_IPV4_CONF_PROXY_ARP=3, NET_IPV4_CONF_ACCEPT_REDIRECTS=4, NET_IPV4_CONF_SECURE_REDIRECTS=5, NET_IPV4_CONF_SEND_REDIRECTS=6, NET_IPV4_CONF_SHARED_MEDIA=7, NET_IPV4_CONF_RP_FILTER=8, NET_IPV4_CONF_ACCEPT_SOURCE_ROUTE=9, NET_IPV4_CONF_BOOTP_RELAY=10, NET_IPV4_CONF_LOG_MARTIANS=11, NET_IPV4_CONF_TAG=12, NET_IPV4_CONF_ARPFILTER=13, NET_IPV4_CONF_MEDIUM_ID=14, NET_IPV4_CONF_NOXFRM=15, NET_IPV4_CONF_NOPOLICY=16, NET_IPV4_CONF_FORCE_IGMP_VERSION=17, NET_IPV4_CONF_ARP_ANNOUNCE=18, NET_IPV4_CONF_ARP_IGNORE=19, NET_IPV4_CONF_PROMOTE_SECONDARIES=20, NET_IPV4_CONF_ARP_ACCEPT=21, NET_IPV4_CONF_ARP_NOTIFY=22, }; enum { NET_IPV4_NF_CONNTRACK_MAX=1, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT=10, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_IPV4_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_IPV4_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_IPV4_NF_CONNTRACK_BUCKETS=14, NET_IPV4_NF_CONNTRACK_LOG_INVALID=15, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_IPV4_NF_CONNTRACK_TCP_LOOSE=17, NET_IPV4_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_IPV4_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_IPV4_NF_CONNTRACK_COUNT=27, NET_IPV4_NF_CONNTRACK_CHECKSUM=28, }; enum { NET_IPV6_CONF=16, NET_IPV6_NEIGH=17, NET_IPV6_ROUTE=18, NET_IPV6_ICMP=19, NET_IPV6_BINDV6ONLY=20, NET_IPV6_IP6FRAG_HIGH_THRESH=21, NET_IPV6_IP6FRAG_LOW_THRESH=22, NET_IPV6_IP6FRAG_TIME=23, NET_IPV6_IP6FRAG_SECRET_INTERVAL=24, NET_IPV6_MLD_MAX_MSF=25, }; enum { NET_IPV6_ROUTE_FLUSH=1, NET_IPV6_ROUTE_GC_THRESH=2, NET_IPV6_ROUTE_MAX_SIZE=3, NET_IPV6_ROUTE_GC_MIN_INTERVAL=4, NET_IPV6_ROUTE_GC_TIMEOUT=5, NET_IPV6_ROUTE_GC_INTERVAL=6, NET_IPV6_ROUTE_GC_ELASTICITY=7, NET_IPV6_ROUTE_MTU_EXPIRES=8, NET_IPV6_ROUTE_MIN_ADVMSS=9, NET_IPV6_ROUTE_GC_MIN_INTERVAL_MS=10 }; enum { NET_IPV6_FORWARDING=1, NET_IPV6_HOP_LIMIT=2, NET_IPV6_MTU=3, NET_IPV6_ACCEPT_RA=4, NET_IPV6_ACCEPT_REDIRECTS=5, NET_IPV6_AUTOCONF=6, NET_IPV6_DAD_TRANSMITS=7, NET_IPV6_RTR_SOLICITS=8, NET_IPV6_RTR_SOLICIT_INTERVAL=9, NET_IPV6_RTR_SOLICIT_DELAY=10, NET_IPV6_USE_TEMPADDR=11, NET_IPV6_TEMP_VALID_LFT=12, NET_IPV6_TEMP_PREFERED_LFT=13, NET_IPV6_REGEN_MAX_RETRY=14, NET_IPV6_MAX_DESYNC_FACTOR=15, NET_IPV6_MAX_ADDRESSES=16, NET_IPV6_FORCE_MLD_VERSION=17, NET_IPV6_ACCEPT_RA_DEFRTR=18, NET_IPV6_ACCEPT_RA_PINFO=19, NET_IPV6_ACCEPT_RA_RTR_PREF=20, NET_IPV6_RTR_PROBE_INTERVAL=21, NET_IPV6_ACCEPT_RA_RT_INFO_MAX_PLEN=22, NET_IPV6_PROXY_NDP=23, NET_IPV6_ACCEPT_SOURCE_ROUTE=25, NET_IPV6_ACCEPT_RA_FROM_LOCAL=26, __NET_IPV6_MAX }; enum { NET_IPV6_ICMP_RATELIMIT=1 }; enum { NET_NEIGH_MCAST_SOLICIT=1, NET_NEIGH_UCAST_SOLICIT=2, NET_NEIGH_APP_SOLICIT=3, NET_NEIGH_RETRANS_TIME=4, NET_NEIGH_REACHABLE_TIME=5, NET_NEIGH_DELAY_PROBE_TIME=6, NET_NEIGH_GC_STALE_TIME=7, NET_NEIGH_UNRES_QLEN=8, NET_NEIGH_PROXY_QLEN=9, NET_NEIGH_ANYCAST_DELAY=10, NET_NEIGH_PROXY_DELAY=11, NET_NEIGH_LOCKTIME=12, NET_NEIGH_GC_INTERVAL=13, NET_NEIGH_GC_THRESH1=14, NET_NEIGH_GC_THRESH2=15, NET_NEIGH_GC_THRESH3=16, NET_NEIGH_RETRANS_TIME_MS=17, NET_NEIGH_REACHABLE_TIME_MS=18, }; enum { NET_DCCP_DEFAULT=1, }; enum { NET_IPX_PPROP_BROADCASTING=1, NET_IPX_FORWARDING=2 }; enum { NET_LLC2=1, NET_LLC_STATION=2, }; enum { NET_LLC2_TIMEOUT=1, }; enum { NET_LLC_STATION_ACK_TIMEOUT=1, }; enum { NET_LLC2_ACK_TIMEOUT=1, NET_LLC2_P_TIMEOUT=2, NET_LLC2_REJ_TIMEOUT=3, NET_LLC2_BUSY_TIMEOUT=4, }; enum { NET_ATALK_AARP_EXPIRY_TIME=1, NET_ATALK_AARP_TICK_TIME=2, NET_ATALK_AARP_RETRANSMIT_LIMIT=3, NET_ATALK_AARP_RESOLVE_TIME=4 }; enum { NET_NETROM_DEFAULT_PATH_QUALITY=1, NET_NETROM_OBSOLESCENCE_COUNT_INITIALISER=2, NET_NETROM_NETWORK_TTL_INITIALISER=3, NET_NETROM_TRANSPORT_TIMEOUT=4, NET_NETROM_TRANSPORT_MAXIMUM_TRIES=5, NET_NETROM_TRANSPORT_ACKNOWLEDGE_DELAY=6, NET_NETROM_TRANSPORT_BUSY_DELAY=7, NET_NETROM_TRANSPORT_REQUESTED_WINDOW_SIZE=8, NET_NETROM_TRANSPORT_NO_ACTIVITY_TIMEOUT=9, NET_NETROM_ROUTING_CONTROL=10, NET_NETROM_LINK_FAILS_COUNT=11, NET_NETROM_RESET=12 }; enum { NET_AX25_IP_DEFAULT_MODE=1, NET_AX25_DEFAULT_MODE=2, NET_AX25_BACKOFF_TYPE=3, NET_AX25_CONNECT_MODE=4, NET_AX25_STANDARD_WINDOW=5, NET_AX25_EXTENDED_WINDOW=6, NET_AX25_T1_TIMEOUT=7, NET_AX25_T2_TIMEOUT=8, NET_AX25_T3_TIMEOUT=9, NET_AX25_IDLE_TIMEOUT=10, NET_AX25_N2=11, NET_AX25_PACLEN=12, NET_AX25_PROTOCOL=13, NET_AX25_DAMA_SLAVE_TIMEOUT=14 }; enum { NET_ROSE_RESTART_REQUEST_TIMEOUT=1, NET_ROSE_CALL_REQUEST_TIMEOUT=2, NET_ROSE_RESET_REQUEST_TIMEOUT=3, NET_ROSE_CLEAR_REQUEST_TIMEOUT=4, NET_ROSE_ACK_HOLD_BACK_TIMEOUT=5, NET_ROSE_ROUTING_CONTROL=6, NET_ROSE_LINK_FAIL_TIMEOUT=7, NET_ROSE_MAX_VCS=8, NET_ROSE_WINDOW_SIZE=9, NET_ROSE_NO_ACTIVITY_TIMEOUT=10 }; enum { NET_X25_RESTART_REQUEST_TIMEOUT=1, NET_X25_CALL_REQUEST_TIMEOUT=2, NET_X25_RESET_REQUEST_TIMEOUT=3, NET_X25_CLEAR_REQUEST_TIMEOUT=4, NET_X25_ACK_HOLD_BACK_TIMEOUT=5, NET_X25_FORWARD=6 }; enum { NET_TR_RIF_TIMEOUT=1 }; enum { NET_DECNET_NODE_TYPE = 1, NET_DECNET_NODE_ADDRESS = 2, NET_DECNET_NODE_NAME = 3, NET_DECNET_DEFAULT_DEVICE = 4, NET_DECNET_TIME_WAIT = 5, NET_DECNET_DN_COUNT = 6, NET_DECNET_DI_COUNT = 7, NET_DECNET_DR_COUNT = 8, NET_DECNET_DST_GC_INTERVAL = 9, NET_DECNET_CONF = 10, NET_DECNET_NO_FC_MAX_CWND = 11, NET_DECNET_MEM = 12, NET_DECNET_RMEM = 13, NET_DECNET_WMEM = 14, NET_DECNET_DEBUG_LEVEL = 255 }; enum { NET_DECNET_CONF_LOOPBACK = -2, NET_DECNET_CONF_DDCMP = -3, NET_DECNET_CONF_PPP = -4, NET_DECNET_CONF_X25 = -5, NET_DECNET_CONF_GRE = -6, NET_DECNET_CONF_ETHER = -7 }; enum { NET_DECNET_CONF_DEV_PRIORITY = 1, NET_DECNET_CONF_DEV_T1 = 2, NET_DECNET_CONF_DEV_T2 = 3, NET_DECNET_CONF_DEV_T3 = 4, NET_DECNET_CONF_DEV_FORWARDING = 5, NET_DECNET_CONF_DEV_BLKSIZE = 6, NET_DECNET_CONF_DEV_STATE = 7 }; enum { NET_SCTP_RTO_INITIAL = 1, NET_SCTP_RTO_MIN = 2, NET_SCTP_RTO_MAX = 3, NET_SCTP_RTO_ALPHA = 4, NET_SCTP_RTO_BETA = 5, NET_SCTP_VALID_COOKIE_LIFE = 6, NET_SCTP_ASSOCIATION_MAX_RETRANS = 7, NET_SCTP_PATH_MAX_RETRANS = 8, NET_SCTP_MAX_INIT_RETRANSMITS = 9, NET_SCTP_HB_INTERVAL = 10, NET_SCTP_PRESERVE_ENABLE = 11, NET_SCTP_MAX_BURST = 12, NET_SCTP_ADDIP_ENABLE = 13, NET_SCTP_PRSCTP_ENABLE = 14, NET_SCTP_SNDBUF_POLICY = 15, NET_SCTP_SACK_TIMEOUT = 16, NET_SCTP_RCVBUF_POLICY = 17, }; enum { NET_BRIDGE_NF_CALL_ARPTABLES = 1, NET_BRIDGE_NF_CALL_IPTABLES = 2, NET_BRIDGE_NF_CALL_IP6TABLES = 3, NET_BRIDGE_NF_FILTER_VLAN_TAGGED = 4, NET_BRIDGE_NF_FILTER_PPPOE_TAGGED = 5, }; enum { NET_IRDA_DISCOVERY=1, NET_IRDA_DEVNAME=2, NET_IRDA_DEBUG=3, NET_IRDA_FAST_POLL=4, NET_IRDA_DISCOVERY_SLOTS=5, NET_IRDA_DISCOVERY_TIMEOUT=6, NET_IRDA_SLOT_TIMEOUT=7, NET_IRDA_MAX_BAUD_RATE=8, NET_IRDA_MIN_TX_TURN_TIME=9, NET_IRDA_MAX_TX_DATA_SIZE=10, NET_IRDA_MAX_TX_WINDOW=11, NET_IRDA_MAX_NOREPLY_TIME=12, NET_IRDA_WARN_NOREPLY_TIME=13, NET_IRDA_LAP_KEEPALIVE_TIME=14, }; enum { FS_NRINODE=1, FS_STATINODE=2, FS_MAXINODE=3, FS_NRDQUOT=4, FS_MAXDQUOT=5, FS_NRFILE=6, FS_MAXFILE=7, FS_DENTRY=8, FS_NRSUPER=9, FS_MAXSUPER=10, FS_OVERFLOWUID=11, FS_OVERFLOWGID=12, FS_LEASES=13, FS_DIR_NOTIFY=14, FS_LEASE_TIME=15, FS_DQSTATS=16, FS_XFS=17, FS_AIO_NR=18, FS_AIO_MAX_NR=19, FS_INOTIFY=20, FS_OCFS2=988, }; enum { FS_DQ_LOOKUPS = 1, FS_DQ_DROPS = 2, FS_DQ_READS = 3, FS_DQ_WRITES = 4, FS_DQ_CACHE_HITS = 5, FS_DQ_ALLOCATED = 6, FS_DQ_FREE = 7, FS_DQ_SYNCS = 8, FS_DQ_WARNINGS = 9, }; enum { DEV_CDROM=1, DEV_HWMON=2, DEV_PARPORT=3, DEV_RAID=4, DEV_MAC_HID=5, DEV_SCSI=6, DEV_IPMI=7, }; enum { DEV_CDROM_INFO=1, DEV_CDROM_AUTOCLOSE=2, DEV_CDROM_AUTOEJECT=3, DEV_CDROM_DEBUG=4, DEV_CDROM_LOCK=5, DEV_CDROM_CHECK_MEDIA=6 }; enum { DEV_PARPORT_DEFAULT=-3 }; enum { DEV_RAID_SPEED_LIMIT_MIN=1, DEV_RAID_SPEED_LIMIT_MAX=2 }; enum { DEV_PARPORT_DEFAULT_TIMESLICE=1, DEV_PARPORT_DEFAULT_SPINTIME=2 }; enum { DEV_PARPORT_SPINTIME=1, DEV_PARPORT_BASE_ADDR=2, DEV_PARPORT_IRQ=3, DEV_PARPORT_DMA=4, DEV_PARPORT_MODES=5, DEV_PARPORT_DEVICES=6, DEV_PARPORT_AUTOPROBE=16 }; enum { DEV_PARPORT_DEVICES_ACTIVE=-3, }; enum { DEV_PARPORT_DEVICE_TIMESLICE=1, }; enum { DEV_MAC_HID_KEYBOARD_SENDS_LINUX_KEYCODES=1, DEV_MAC_HID_KEYBOARD_LOCK_KEYCODES=2, DEV_MAC_HID_MOUSE_BUTTON_EMULATION=3, DEV_MAC_HID_MOUSE_BUTTON2_KEYCODE=4, DEV_MAC_HID_MOUSE_BUTTON3_KEYCODE=5, DEV_MAC_HID_ADB_MOUSE_SENDS_KEYCODES=6 }; enum { DEV_SCSI_LOGGING_LEVEL=1, }; enum { DEV_IPMI_POWEROFF_POWERCYCLE=1, }; enum { ABI_DEFHANDLER_COFF=1, ABI_DEFHANDLER_ELF=2, ABI_DEFHANDLER_LCALL7=3, ABI_DEFHANDLER_LIBCSO=4, ABI_TRACE=5, ABI_FAKE_UTSNAME=6, }; # 44 "/usr/include/sys/sysctl.h" 2 3 4 # 63 "/usr/include/sys/sysctl.h" 3 4 # 1 "/usr/include/bits/sysctl.h" 1 3 4 # 64 "/usr/include/sys/sysctl.h" 2 3 4 extern int sysctl (int *__name, int __nlen, void *__oldval, size_t *__oldlenp, void *__newval, size_t __newlen) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-F9l5hH/config.packages.pthread/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:731) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:731) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.papi(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.papi(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.valgrind(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:672) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:672) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in User specified root directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers User specified root directory VALGRIND: ['/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/include', '/usr/local/include'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/include', '/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/include', '/usr/local/include'] Executing: mpic++ -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers -I/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/include -I/usr/local/include /tmp/petsc-F9l5hH/config.headers/conftest.cc stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/usr/include/valgrind/valgrind.h" 1 3 4 # 95 "/usr/include/valgrind/valgrind.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 98 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 3 4 typedef __gnuc_va_list va_list; # 96 "/usr/include/valgrind/valgrind.h" 2 3 4 # 390 "/usr/include/valgrind/valgrind.h" 3 4 typedef struct { unsigned long long int nraddr; } OrigFn; # 6111 "/usr/include/valgrind/valgrind.h" 3 4 typedef enum { VG_USERREQ__RUNNING_ON_VALGRIND = 0x1001, VG_USERREQ__DISCARD_TRANSLATIONS = 0x1002, VG_USERREQ__CLIENT_CALL0 = 0x1101, VG_USERREQ__CLIENT_CALL1 = 0x1102, VG_USERREQ__CLIENT_CALL2 = 0x1103, VG_USERREQ__CLIENT_CALL3 = 0x1104, VG_USERREQ__COUNT_ERRORS = 0x1201, VG_USERREQ__GDB_MONITOR_COMMAND = 0x1202, VG_USERREQ__MALLOCLIKE_BLOCK = 0x1301, VG_USERREQ__RESIZEINPLACE_BLOCK = 0x130b, VG_USERREQ__FREELIKE_BLOCK = 0x1302, VG_USERREQ__CREATE_MEMPOOL = 0x1303, VG_USERREQ__DESTROY_MEMPOOL = 0x1304, VG_USERREQ__MEMPOOL_ALLOC = 0x1305, VG_USERREQ__MEMPOOL_FREE = 0x1306, VG_USERREQ__MEMPOOL_TRIM = 0x1307, VG_USERREQ__MOVE_MEMPOOL = 0x1308, VG_USERREQ__MEMPOOL_CHANGE = 0x1309, VG_USERREQ__MEMPOOL_EXISTS = 0x130a, # 6156 "/usr/include/valgrind/valgrind.h" 3 4 VG_USERREQ__PRINTF = 0x1401, VG_USERREQ__PRINTF_BACKTRACE = 0x1402, VG_USERREQ__PRINTF_VALIST_BY_REF = 0x1403, VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF = 0x1404, VG_USERREQ__STACK_REGISTER = 0x1501, VG_USERREQ__STACK_DEREGISTER = 0x1502, VG_USERREQ__STACK_CHANGE = 0x1503, VG_USERREQ__LOAD_PDB_DEBUGINFO = 0x1601, VG_USERREQ__MAP_IP_TO_SRCLOC = 0x1701, VG_USERREQ__CHANGE_ERR_DISABLEMENT = 0x1801, VG_USERREQ__VEX_INIT_FOR_IRI = 0x1901 } Vg_ClientRequest; # 6216 "/usr/include/valgrind/valgrind.h" 3 4 static int VALGRIND_PRINTF(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs,format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }) ; __builtin_va_end(vargs); return (int)_qzz_res; } static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs,format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }) ; __builtin_va_end(vargs); return (int)_qzz_res; } # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['valgrind/valgrind.h'] in ['/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/include', '/usr/local/include'] Popping language Cxx All intermediate test results are stored in /tmp/petsc-F9l5hH/config.packages.valgrind Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.packages.valgrind/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -I/tmp/petsc-F9l5hH/config.packages.pthread -I/tmp/petsc-F9l5hH/config.packages.valgrind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 -I/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/include /tmp/petsc-F9l5hH/config.packages.valgrind/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Popping language Cxx ================================================================================ TEST locateC2html from config.packages.c2html(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program ./c2html...not found Checking for program /home/mpovolot/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/local/visit/bin/c2html...not found Checking for program /opt/matlab/bin/c2html...not found Checking for program /home/mpovolot/c2html...not found Checking for program /home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/bin/win32fe/c2html...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Lgrind ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/Matlab.py:35) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/packages/Matlab.py:35) ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Numpy(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.Numpy(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/mpi4py.py:70) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:70) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/petsc4py.py:105) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:105) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.ssl(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/ssl.py:23) TESTING: configureLibrary from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:23) ================================================================================== Checking for a functional ssl Checking for library in Compiler specific search SSL: [] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } #ifdef __cplusplus } #endif int main() { _check_SSLv23_method();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.cc:(.text.startup+0x5): undefined reference to `SSLv23_method' collect2: error: ld returned 1 exit status Popping language Cxx Checking for library in Compiler specific search SSL: ['libssl.a', 'libcrypto.a'] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library ['libssl.a', 'libcrypto.a'] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } #ifdef __cplusplus } #endif int main() { _check_SSLv23_method();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lssl -lcrypto -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBSSL" to "1" Defined "HAVE_LIBCRYPTO" to "1" Popping language Cxx Checking for headers Compiler specific search SSL: ['/usr/local/include'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['openssl/ssl.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: mpic++ -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers -I/usr/local/include /tmp/petsc-F9l5hH/config.headers/conftest.cc stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/usr/include/openssl/ssl.h" 1 3 4 # 146 "/usr/include/openssl/ssl.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 extern "C" { # 313 "/usr/include/openssl/e_os2.h" 3 4 } # 147 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/comp.h" 1 3 4 # 1 "/usr/include/openssl/crypto.h" 1 3 4 # 120 "/usr/include/openssl/crypto.h" 3 4 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); # 235 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 236 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern unsigned long int strtoul_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern long long int strtoll_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern unsigned long long int strtoull_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern double strtod_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern float strtof_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern long double strtold_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 extern "C" { typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 # 54 "/usr/include/sys/select.h" 3 4 typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 extern "C" { # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 } # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 } # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/usr/include/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 } # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 493 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *secure_getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 629 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 651 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 673 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 683 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 693 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 705 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (const char *__command) ; extern char *canonicalize_file_name (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (const void *, const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (const void *, const void *, void *); extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 811 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) throw (); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw (); extern int wctomb (char *__s, wchar_t __wchar) throw (); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 898 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 4 # 955 "/usr/include/stdlib.h" 2 3 4 # 967 "/usr/include/stdlib.h" 3 4 } # 121 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 123 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 29 "/usr/include/stdio.h" 3 4 extern "C" { # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 34 "/usr/include/stdio.h" 2 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 74 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 31 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 82 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 32 "/usr/include/libio.h" 2 3 4 # 49 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 50 "/usr/include/libio.h" 2 3 4 # 144 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 154 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 177 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 245 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 293 "/usr/include/libio.h" 3 4 __off64_t _offset; # 302 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 338 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); typedef __io_read_fn cookie_read_function_t; typedef __io_write_fn cookie_write_function_t; typedef __io_seek_fn cookie_seek_function_t; typedef __io_close_fn cookie_close_function_t; typedef struct { __io_read_fn *read; __io_write_fn *write; __io_seek_fn *seek; __io_close_fn *close; } _IO_cookie_io_functions_t; typedef _IO_cookie_io_functions_t cookie_io_functions_t; struct _IO_cookie_file; extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write, void *__cookie, _IO_cookie_io_functions_t __fns); extern "C" { extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 434 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) throw (); extern int _IO_ferror (_IO_FILE *__fp) throw (); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) throw (); extern void _IO_funlockfile (_IO_FILE *) throw (); extern int _IO_ftrylockfile (_IO_FILE *) throw (); # 464 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) throw (); # 526 "/usr/include/libio.h" 3 4 } # 75 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 108 "/usr/include/stdio.h" 3 4 typedef _G_fpos_t fpos_t; typedef _G_fpos64_t fpos64_t; # 164 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 165 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (const char *__filename) throw (); extern int rename (const char *__old, const char *__new) throw (); extern int renameat (int __oldfd, const char *__old, int __newfd, const char *__new) throw (); extern FILE *tmpfile (void) ; # 205 "/usr/include/stdio.h" 3 4 extern FILE *tmpfile64 (void) ; extern char *tmpnam (char *__s) throw () ; extern char *tmpnam_r (char *__s) throw () ; # 227 "/usr/include/stdio.h" 3 4 extern char *tempnam (const char *__dir, const char *__pfx) throw () __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 252 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 262 "/usr/include/stdio.h" 3 4 extern int fcloseall (void); extern FILE *fopen (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; # 295 "/usr/include/stdio.h" 3 4 extern FILE *fopen64 (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen64 (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; extern FILE *fdopen (int __fd, const char *__modes) throw () ; extern FILE *fopencookie (void *__restrict __magic_cookie, const char *__restrict __modes, _IO_cookie_io_functions_t __io_funcs) throw () ; extern FILE *fmemopen (void *__s, size_t __len, const char *__modes) throw () ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) throw () ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) throw (); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) throw (); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) throw (); extern void setlinebuf (FILE *__stream) throw (); extern int fprintf (FILE *__restrict __stream, const char *__restrict __format, ...); extern int printf (const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, const char *__restrict __format, ...) throw (); extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) throw (); extern int snprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 3, 0))); extern int vasprintf (char **__restrict __ptr, const char *__restrict __f, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 2, 0))) ; extern int __asprintf (char **__restrict __ptr, const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int asprintf (char **__restrict __ptr, const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int vdprintf (int __fd, const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) ; extern int scanf (const char *__restrict __format, ...) ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) throw (); # 463 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__scanf__, 2, 0))); # 522 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 550 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 561 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 594 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 638 "/usr/include/stdio.h" 3 4 extern char *gets (char *__s) __attribute__ ((__deprecated__)); # 649 "/usr/include/stdio.h" 3 4 extern char *fgets_unlocked (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 665 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (const char *__restrict __s, FILE *__restrict __stream); extern int puts (const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 726 "/usr/include/stdio.h" 3 4 extern int fputs_unlocked (const char *__restrict __s, FILE *__restrict __stream); # 737 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 773 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 792 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, const fpos_t *__pos); # 815 "/usr/include/stdio.h" 3 4 extern int fseeko64 (FILE *__stream, __off64_t __off, int __whence); extern __off64_t ftello64 (FILE *__stream) ; extern int fgetpos64 (FILE *__restrict __stream, fpos64_t *__restrict __pos); extern int fsetpos64 (FILE *__stream, const fpos64_t *__pos); extern void clearerr (FILE *__stream) throw (); extern int feof (FILE *__stream) throw () ; extern int ferror (FILE *__stream) throw () ; extern void clearerr_unlocked (FILE *__stream) throw (); extern int feof_unlocked (FILE *__stream) throw () ; extern int ferror_unlocked (FILE *__stream) throw () ; extern void perror (const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 4 # 26 "/usr/include/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern const char *const sys_errlist[]; extern int _sys_nerr; extern const char *const _sys_errlist[]; # 854 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) throw () ; extern int fileno_unlocked (FILE *__stream) throw () ; # 872 "/usr/include/stdio.h" 3 4 extern FILE *popen (const char *__command, const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) throw (); extern char *cuserid (char *__s); struct obstack; extern int obstack_printf (struct obstack *__restrict __obstack, const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))); extern int obstack_vprintf (struct obstack *__restrict __obstack, const char *__restrict __format, __gnuc_va_list __args) throw () __attribute__ ((__format__ (__printf__, 2, 0))); extern void flockfile (FILE *__stream) throw (); extern int ftrylockfile (FILE *__stream) throw () ; extern void funlockfile (FILE *__stream) throw (); # 942 "/usr/include/stdio.h" 3 4 } # 126 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/stack.h" 1 3 4 # 63 "/usr/include/openssl/stack.h" 3 4 extern "C" { typedef struct stack_st { int num; char **data; int sorted; int num_alloc; int (*comp)(const void *, const void *); } _STACK; int sk_num(const _STACK *); void *sk_value(const _STACK *, int); void *sk_set(_STACK *, int, void *); _STACK *sk_new(int (*cmp)(const void *, const void *)); _STACK *sk_new_null(void); void sk_free(_STACK *); void sk_pop_free(_STACK *st, void (*func)(void *)); int sk_insert(_STACK *sk, void *data, int where); void *sk_delete(_STACK *st, int loc); void *sk_delete_ptr(_STACK *st, void *p); int sk_find(_STACK *st, void *data); int sk_find_ex(_STACK *st, void *data); int sk_push(_STACK *st, void *data); int sk_unshift(_STACK *st, void *data); void *sk_shift(_STACK *st); void *sk_pop(_STACK *st); void sk_zero(_STACK *st); int (*sk_set_cmp_func(_STACK *sk, int (*c)(const void *, const void *))) (const void *, const void *); _STACK *sk_dup(_STACK *st); void sk_sort(_STACK *st); int sk_is_sorted(const _STACK *st); } # 129 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/safestack.h" 1 3 4 # 61 "/usr/include/openssl/safestack.h" 3 4 extern "C" { # 117 "/usr/include/openssl/safestack.h" 3 4 typedef char *OPENSSL_STRING; typedef const char *OPENSSL_CSTRING; # 129 "/usr/include/openssl/safestack.h" 3 4 struct stack_st_OPENSSL_STRING { _STACK stack; }; typedef void *OPENSSL_BLOCK; struct stack_st_OPENSSL_BLOCK { _STACK stack; }; # 2669 "/usr/include/openssl/safestack.h" 3 4 } # 130 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/opensslv.h" 1 3 4 extern "C" { # 94 "/usr/include/openssl/opensslv.h" 3 4 } # 131 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/ossl_typ.h" 1 3 4 # 59 "/usr/include/openssl/ossl_typ.h" 3 4 extern "C" { # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/ossl_typ.h" 2 3 4 # 83 "/usr/include/openssl/ossl_typ.h" 3 4 typedef struct asn1_string_st ASN1_INTEGER; typedef struct asn1_string_st ASN1_ENUMERATED; typedef struct asn1_string_st ASN1_BIT_STRING; typedef struct asn1_string_st ASN1_OCTET_STRING; typedef struct asn1_string_st ASN1_PRINTABLESTRING; typedef struct asn1_string_st ASN1_T61STRING; typedef struct asn1_string_st ASN1_IA5STRING; typedef struct asn1_string_st ASN1_GENERALSTRING; typedef struct asn1_string_st ASN1_UNIVERSALSTRING; typedef struct asn1_string_st ASN1_BMPSTRING; typedef struct asn1_string_st ASN1_UTCTIME; typedef struct asn1_string_st ASN1_TIME; typedef struct asn1_string_st ASN1_GENERALIZEDTIME; typedef struct asn1_string_st ASN1_VISIBLESTRING; typedef struct asn1_string_st ASN1_UTF8STRING; typedef struct asn1_string_st ASN1_STRING; typedef int ASN1_BOOLEAN; typedef int ASN1_NULL; typedef struct ASN1_ITEM_st ASN1_ITEM; typedef struct asn1_pctx_st ASN1_PCTX; # 118 "/usr/include/openssl/ossl_typ.h" 3 4 typedef struct bignum_st BIGNUM; typedef struct bignum_ctx BN_CTX; typedef struct bn_blinding_st BN_BLINDING; typedef struct bn_mont_ctx_st BN_MONT_CTX; typedef struct bn_recp_ctx_st BN_RECP_CTX; typedef struct bn_gencb_st BN_GENCB; typedef struct buf_mem_st BUF_MEM; typedef struct evp_cipher_st EVP_CIPHER; typedef struct evp_cipher_ctx_st EVP_CIPHER_CTX; typedef struct env_md_st EVP_MD; typedef struct env_md_ctx_st EVP_MD_CTX; typedef struct evp_pkey_st EVP_PKEY; typedef struct evp_pkey_asn1_method_st EVP_PKEY_ASN1_METHOD; typedef struct evp_pkey_method_st EVP_PKEY_METHOD; typedef struct evp_pkey_ctx_st EVP_PKEY_CTX; typedef struct dh_st DH; typedef struct dh_method DH_METHOD; typedef struct dsa_st DSA; typedef struct dsa_method DSA_METHOD; typedef struct rsa_st RSA; typedef struct rsa_meth_st RSA_METHOD; typedef struct rand_meth_st RAND_METHOD; typedef struct ecdh_method ECDH_METHOD; typedef struct ecdsa_method ECDSA_METHOD; typedef struct x509_st X509; typedef struct X509_algor_st X509_ALGOR; typedef struct X509_crl_st X509_CRL; typedef struct x509_crl_method_st X509_CRL_METHOD; typedef struct x509_revoked_st X509_REVOKED; typedef struct X509_name_st X509_NAME; typedef struct X509_pubkey_st X509_PUBKEY; typedef struct x509_store_st X509_STORE; typedef struct x509_store_ctx_st X509_STORE_CTX; typedef struct pkcs8_priv_key_info_st PKCS8_PRIV_KEY_INFO; typedef struct v3_ext_ctx X509V3_CTX; typedef struct conf_st CONF; typedef struct store_st STORE; typedef struct store_method_st STORE_METHOD; typedef struct ui_st UI; typedef struct ui_method_st UI_METHOD; typedef struct st_ERR_FNS ERR_FNS; typedef struct engine_st ENGINE; typedef struct ssl_st SSL; typedef struct ssl_ctx_st SSL_CTX; typedef struct X509_POLICY_NODE_st X509_POLICY_NODE; typedef struct X509_POLICY_LEVEL_st X509_POLICY_LEVEL; typedef struct X509_POLICY_TREE_st X509_POLICY_TREE; typedef struct X509_POLICY_CACHE_st X509_POLICY_CACHE; typedef struct AUTHORITY_KEYID_st AUTHORITY_KEYID; typedef struct DIST_POINT_st DIST_POINT; typedef struct ISSUING_DIST_POINT_st ISSUING_DIST_POINT; typedef struct NAME_CONSTRAINTS_st NAME_CONSTRAINTS; typedef struct crypto_ex_data_st CRYPTO_EX_DATA; typedef int CRYPTO_EX_new(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef void CRYPTO_EX_free(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef int CRYPTO_EX_dup(CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from, void *from_d, int idx, long argl, void *argp); typedef struct ocsp_req_ctx_st OCSP_REQ_CTX; typedef struct ocsp_response_st OCSP_RESPONSE; typedef struct ocsp_responder_id_st OCSP_RESPID; } # 132 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 58 "/usr/include/openssl/symhacks.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 59 "/usr/include/openssl/symhacks.h" 2 3 4 # 140 "/usr/include/openssl/crypto.h" 2 3 4 extern "C" { # 171 "/usr/include/openssl/crypto.h" 3 4 typedef struct openssl_item_st { int code; void *value; size_t value_size; size_t *value_length; } OPENSSL_ITEM; # 256 "/usr/include/openssl/crypto.h" 3 4 typedef struct { int references; struct CRYPTO_dynlock_value *data; } CRYPTO_dynlock; # 283 "/usr/include/openssl/crypto.h" 3 4 typedef struct bio_st BIO_dummy; struct crypto_ex_data_st { struct stack_st_void *sk; int dummy; }; struct stack_st_void { _STACK stack; }; typedef struct crypto_ex_data_func_st { long argl; void *argp; CRYPTO_EX_new *new_func; CRYPTO_EX_free *free_func; CRYPTO_EX_dup *dup_func; } CRYPTO_EX_DATA_FUNCS; struct stack_st_CRYPTO_EX_DATA_FUNCS { _STACK stack; }; # 356 "/usr/include/openssl/crypto.h" 3 4 int CRYPTO_mem_ctrl(int mode); int CRYPTO_is_mem_check_on(void); # 384 "/usr/include/openssl/crypto.h" 3 4 const char *SSLeay_version(int type); unsigned long SSLeay(void); int OPENSSL_issetugid(void); typedef struct st_CRYPTO_EX_DATA_IMPL CRYPTO_EX_DATA_IMPL; const CRYPTO_EX_DATA_IMPL *CRYPTO_get_ex_data_implementation(void); int CRYPTO_set_ex_data_implementation(const CRYPTO_EX_DATA_IMPL *i); int CRYPTO_ex_data_new_class(void); int CRYPTO_get_ex_new_index(int class_index, long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int CRYPTO_new_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad); int CRYPTO_dup_ex_data(int class_index, CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from); void CRYPTO_free_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad); int CRYPTO_set_ex_data(CRYPTO_EX_DATA *ad, int idx, void *val); void *CRYPTO_get_ex_data(const CRYPTO_EX_DATA *ad,int idx); void CRYPTO_cleanup_all_ex_data(void); int CRYPTO_get_new_lockid(char *name); int CRYPTO_num_locks(void); void CRYPTO_lock(int mode, int type,const char *file,int line); void CRYPTO_set_locking_callback(void (*func)(int mode,int type, const char *file,int line)); void (*CRYPTO_get_locking_callback(void))(int mode,int type,const char *file, int line); void CRYPTO_set_add_lock_callback(int (*func)(int *num,int mount,int type, const char *file, int line)); int (*CRYPTO_get_add_lock_callback(void))(int *num,int mount,int type, const char *file,int line); typedef struct crypto_threadid_st { void *ptr; unsigned long val; } CRYPTO_THREADID; void CRYPTO_THREADID_set_numeric(CRYPTO_THREADID *id, unsigned long val); void CRYPTO_THREADID_set_pointer(CRYPTO_THREADID *id, void *ptr); int CRYPTO_THREADID_set_callback(void (*threadid_func)(CRYPTO_THREADID *)); void (*CRYPTO_THREADID_get_callback(void))(CRYPTO_THREADID *); void CRYPTO_THREADID_current(CRYPTO_THREADID *id); int CRYPTO_THREADID_cmp(const CRYPTO_THREADID *a, const CRYPTO_THREADID *b); void CRYPTO_THREADID_cpy(CRYPTO_THREADID *dest, const CRYPTO_THREADID *src); unsigned long CRYPTO_THREADID_hash(const CRYPTO_THREADID *id); void CRYPTO_set_id_callback(unsigned long (*func)(void)); unsigned long (*CRYPTO_get_id_callback(void))(void); unsigned long CRYPTO_thread_id(void); const char *CRYPTO_get_lock_name(int type); int CRYPTO_add_lock(int *pointer,int amount,int type, const char *file, int line); int CRYPTO_get_new_dynlockid(void); void CRYPTO_destroy_dynlockid(int i); struct CRYPTO_dynlock_value *CRYPTO_get_dynlock_value(int i); void CRYPTO_set_dynlock_create_callback(struct CRYPTO_dynlock_value *(*dyn_create_function)(const char *file, int line)); void CRYPTO_set_dynlock_lock_callback(void (*dyn_lock_function)(int mode, struct CRYPTO_dynlock_value *l, const char *file, int line)); void CRYPTO_set_dynlock_destroy_callback(void (*dyn_destroy_function)(struct CRYPTO_dynlock_value *l, const char *file, int line)); struct CRYPTO_dynlock_value *(*CRYPTO_get_dynlock_create_callback(void))(const char *file,int line); void (*CRYPTO_get_dynlock_lock_callback(void))(int mode, struct CRYPTO_dynlock_value *l, const char *file,int line); void (*CRYPTO_get_dynlock_destroy_callback(void))(struct CRYPTO_dynlock_value *l, const char *file,int line); int CRYPTO_set_mem_functions(void *(*m)(size_t),void *(*r)(void *,size_t), void (*f)(void *)); int CRYPTO_set_locked_mem_functions(void *(*m)(size_t), void (*free_func)(void *)); int CRYPTO_set_mem_ex_functions(void *(*m)(size_t,const char *,int), void *(*r)(void *,size_t,const char *,int), void (*f)(void *)); int CRYPTO_set_locked_mem_ex_functions(void *(*m)(size_t,const char *,int), void (*free_func)(void *)); int CRYPTO_set_mem_debug_functions(void (*m)(void *,int,const char *,int,int), void (*r)(void *,void *,int,const char *,int,int), void (*f)(void *,int), void (*so)(long), long (*go)(void)); void CRYPTO_get_mem_functions(void *(**m)(size_t),void *(**r)(void *, size_t), void (**f)(void *)); void CRYPTO_get_locked_mem_functions(void *(**m)(size_t), void (**f)(void *)); void CRYPTO_get_mem_ex_functions(void *(**m)(size_t,const char *,int), void *(**r)(void *, size_t,const char *,int), void (**f)(void *)); void CRYPTO_get_locked_mem_ex_functions(void *(**m)(size_t,const char *,int), void (**f)(void *)); void CRYPTO_get_mem_debug_functions(void (**m)(void *,int,const char *,int,int), void (**r)(void *,void *,int,const char *,int,int), void (**f)(void *,int), void (**so)(long), long (**go)(void)); void *CRYPTO_malloc_locked(int num, const char *file, int line); void CRYPTO_free_locked(void *ptr); void *CRYPTO_malloc(int num, const char *file, int line); char *CRYPTO_strdup(const char *str, const char *file, int line); void CRYPTO_free(void *ptr); void *CRYPTO_realloc(void *addr,int num, const char *file, int line); void *CRYPTO_realloc_clean(void *addr,int old_num,int num,const char *file, int line); void *CRYPTO_remalloc(void *addr,int num, const char *file, int line); void OPENSSL_cleanse(void *ptr, size_t len); void CRYPTO_set_mem_debug_options(long bits); long CRYPTO_get_mem_debug_options(void); int CRYPTO_push_info_(const char *info, const char *file, int line); int CRYPTO_pop_info(void); int CRYPTO_remove_all_info(void); # 519 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_dbg_malloc(void *addr,int num,const char *file,int line,int before_p); void CRYPTO_dbg_realloc(void *addr1,void *addr2,int num,const char *file,int line,int before_p); void CRYPTO_dbg_free(void *addr,int before_p); # 530 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_dbg_set_options(long bits); long CRYPTO_dbg_get_options(void); void CRYPTO_mem_leaks_fp(FILE *); void CRYPTO_mem_leaks(struct bio_st *bio); typedef void *CRYPTO_MEM_LEAK_CB(unsigned long, const char *, int, int, void *); void CRYPTO_mem_leaks_cb(CRYPTO_MEM_LEAK_CB *cb); void OpenSSLDie(const char *file,int line,const char *assertion); unsigned long *OPENSSL_ia32cap_loc(void); int OPENSSL_isservice(void); int FIPS_mode(void); int FIPS_mode_set(int r); void OPENSSL_init(void); # 575 "/usr/include/openssl/crypto.h" 3 4 void FIPS_selftest_check(void); # 587 "/usr/include/openssl/crypto.h" 3 4 int CRYPTO_memcmp(const void *a, const void *b, size_t len); void ERR_load_CRYPTO_strings(void); void OPENSSL_init_library(void); # 617 "/usr/include/openssl/crypto.h" 3 4 } # 6 "/usr/include/openssl/comp.h" 2 3 4 extern "C" { typedef struct comp_ctx_st COMP_CTX; typedef struct comp_method_st { int type; const char *name; int (*init)(COMP_CTX *ctx); void (*finish)(COMP_CTX *ctx); int (*compress)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen); int (*expand)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen); long (*ctrl)(void); long (*callback_ctrl)(void); } COMP_METHOD; struct comp_ctx_st { COMP_METHOD *meth; unsigned long compress_in; unsigned long compress_out; unsigned long expand_in; unsigned long expand_out; CRYPTO_EX_DATA ex_data; }; COMP_CTX *COMP_CTX_new(COMP_METHOD *meth); void COMP_CTX_free(COMP_CTX *ctx); int COMP_compress_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen); int COMP_expand_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen); COMP_METHOD *COMP_rle(void ); COMP_METHOD *COMP_zlib(void ); void COMP_zlib_cleanup(void); # 62 "/usr/include/openssl/comp.h" 3 4 void ERR_load_COMP_strings(void); # 78 "/usr/include/openssl/comp.h" 3 4 } # 150 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/bio.h" 1 3 4 # 62 "/usr/include/openssl/bio.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/bio.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 1 3 4 # 68 "/usr/include/openssl/bio.h" 2 3 4 # 80 "/usr/include/openssl/bio.h" 3 4 extern "C" { # 233 "/usr/include/openssl/bio.h" 3 4 typedef struct bio_st BIO; void BIO_set_flags(BIO *b, int flags); int BIO_test_flags(const BIO *b, int flags); void BIO_clear_flags(BIO *b, int flags); # 287 "/usr/include/openssl/bio.h" 3 4 long (*BIO_get_callback(const BIO *b)) (struct bio_st *,int,const char *,int, long,long); void BIO_set_callback(BIO *b, long (*callback)(struct bio_st *,int,const char *,int, long,long)); char *BIO_get_callback_arg(const BIO *b); void BIO_set_callback_arg(BIO *b, char *arg); const char * BIO_method_name(const BIO *b); int BIO_method_type(const BIO *b); typedef void bio_info_cb(struct bio_st *, int, const char *, int, long, long); typedef struct bio_method_st { int type; const char *name; int (*bwrite)(BIO *, const char *, int); int (*bread)(BIO *, char *, int); int (*bputs)(BIO *, const char *); int (*bgets)(BIO *, char *, int); long (*ctrl)(BIO *, int, long, void *); int (*create)(BIO *); int (*destroy)(BIO *); long (*callback_ctrl)(BIO *, int, bio_info_cb *); } BIO_METHOD; struct bio_st { BIO_METHOD *method; long (*callback)(struct bio_st *,int,const char *,int, long,long); char *cb_arg; int init; int shutdown; int flags; int retry_reason; int num; void *ptr; struct bio_st *next_bio; struct bio_st *prev_bio; int references; unsigned long num_read; unsigned long num_write; CRYPTO_EX_DATA ex_data; }; struct stack_st_BIO { _STACK stack; }; typedef struct bio_f_buffer_ctx_struct { # 348 "/usr/include/openssl/bio.h" 3 4 int ibuf_size; int obuf_size; char *ibuf; int ibuf_len; int ibuf_off; char *obuf; int obuf_len; int obuf_off; } BIO_F_BUFFER_CTX; typedef int asn1_ps_func(BIO *b, unsigned char **pbuf, int *plen, void *parg); # 576 "/usr/include/openssl/bio.h" 3 4 size_t BIO_ctrl_pending(BIO *b); size_t BIO_ctrl_wpending(BIO *b); # 595 "/usr/include/openssl/bio.h" 3 4 size_t BIO_ctrl_get_write_guarantee(BIO *b); size_t BIO_ctrl_get_read_request(BIO *b); int BIO_ctrl_reset_read_request(BIO *b); # 618 "/usr/include/openssl/bio.h" 3 4 int BIO_set_ex_data(BIO *bio,int idx,void *data); void *BIO_get_ex_data(BIO *bio,int idx); int BIO_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); unsigned long BIO_number_read(BIO *bio); unsigned long BIO_number_written(BIO *bio); int BIO_asn1_set_prefix(BIO *b, asn1_ps_func *prefix, asn1_ps_func *prefix_free); int BIO_asn1_get_prefix(BIO *b, asn1_ps_func **pprefix, asn1_ps_func **pprefix_free); int BIO_asn1_set_suffix(BIO *b, asn1_ps_func *suffix, asn1_ps_func *suffix_free); int BIO_asn1_get_suffix(BIO *b, asn1_ps_func **psuffix, asn1_ps_func **psuffix_free); BIO_METHOD *BIO_s_file(void ); BIO *BIO_new_file(const char *filename, const char *mode); BIO *BIO_new_fp(FILE *stream, int close_flag); BIO * BIO_new(BIO_METHOD *type); int BIO_set(BIO *a,BIO_METHOD *type); int BIO_free(BIO *a); void BIO_vfree(BIO *a); int BIO_read(BIO *b, void *data, int len); int BIO_gets(BIO *bp,char *buf, int size); int BIO_write(BIO *b, const void *data, int len); int BIO_puts(BIO *bp,const char *buf); int BIO_indent(BIO *b,int indent,int max); long BIO_ctrl(BIO *bp,int cmd,long larg,void *parg); long BIO_callback_ctrl(BIO *b, int cmd, void (*fp)(struct bio_st *, int, const char *, int, long, long)); char * BIO_ptr_ctrl(BIO *bp,int cmd,long larg); long BIO_int_ctrl(BIO *bp,int cmd,long larg,int iarg); BIO * BIO_push(BIO *b,BIO *append); BIO * BIO_pop(BIO *b); void BIO_free_all(BIO *a); BIO * BIO_find_type(BIO *b,int bio_type); BIO * BIO_next(BIO *b); BIO * BIO_get_retry_BIO(BIO *bio, int *reason); int BIO_get_retry_reason(BIO *bio); BIO * BIO_dup_chain(BIO *in); int BIO_nread0(BIO *bio, char **buf); int BIO_nread(BIO *bio, char **buf, int num); int BIO_nwrite0(BIO *bio, char **buf); int BIO_nwrite(BIO *bio, char **buf, int num); long BIO_debug_callback(BIO *bio,int cmd,const char *argp,int argi, long argl,long ret); BIO_METHOD *BIO_s_mem(void); BIO *BIO_new_mem_buf(void *buf, int len); BIO_METHOD *BIO_s_socket(void); BIO_METHOD *BIO_s_connect(void); BIO_METHOD *BIO_s_accept(void); BIO_METHOD *BIO_s_fd(void); BIO_METHOD *BIO_s_log(void); BIO_METHOD *BIO_s_bio(void); BIO_METHOD *BIO_s_null(void); BIO_METHOD *BIO_f_null(void); BIO_METHOD *BIO_f_buffer(void); BIO_METHOD *BIO_f_nbio_test(void); BIO_METHOD *BIO_s_datagram(void); int BIO_sock_should_retry(int i); int BIO_sock_non_fatal_error(int error); int BIO_dgram_non_fatal_error(int error); int BIO_fd_should_retry(int i); int BIO_fd_non_fatal_error(int error); int BIO_dump_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len); int BIO_dump_indent_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len, int indent); int BIO_dump(BIO *b,const char *bytes,int len); int BIO_dump_indent(BIO *b,const char *bytes,int len,int indent); int BIO_dump_fp(FILE *fp, const char *s, int len); int BIO_dump_indent_fp(FILE *fp, const char *s, int len, int indent); struct hostent *BIO_gethostbyname(const char *name); # 722 "/usr/include/openssl/bio.h" 3 4 int BIO_sock_error(int sock); int BIO_socket_ioctl(int fd, long type, void *arg); int BIO_socket_nbio(int fd,int mode); int BIO_get_port(const char *str, unsigned short *port_ptr); int BIO_get_host_ip(const char *str, unsigned char *ip); int BIO_get_accept_socket(char *host_port,int mode); int BIO_accept(int sock,char **ip_port); int BIO_sock_init(void ); void BIO_sock_cleanup(void); int BIO_set_tcp_ndelay(int sock,int turn_on); BIO *BIO_new_socket(int sock, int close_flag); BIO *BIO_new_dgram(int fd, int close_flag); # 744 "/usr/include/openssl/bio.h" 3 4 BIO *BIO_new_fd(int fd, int close_flag); BIO *BIO_new_connect(char *host_port); BIO *BIO_new_accept(char *host_port); int BIO_new_bio_pair(BIO **bio1, size_t writebuf1, BIO **bio2, size_t writebuf2); void BIO_copy_next_retry(BIO *b); # 764 "/usr/include/openssl/bio.h" 3 4 int BIO_printf(BIO *bio, const char *format, ...) __attribute__((__format__(__printf__,2,3))); int BIO_vprintf(BIO *bio, const char *format, va_list args) __attribute__((__format__(__printf__,2,0))); int BIO_snprintf(char *buf, size_t n, const char *format, ...) __attribute__((__format__(__printf__,3,4))); int BIO_vsnprintf(char *buf, size_t n, const char *format, va_list args) __attribute__((__format__(__printf__,3,0))); void ERR_load_BIO_strings(void); # 849 "/usr/include/openssl/bio.h" 3 4 } # 153 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/x509.h" 1 3 4 # 67 "/usr/include/openssl/x509.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 68 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/buffer.h" 1 3 4 # 65 "/usr/include/openssl/buffer.h" 3 4 extern "C" { # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 69 "/usr/include/openssl/buffer.h" 2 3 4 # 77 "/usr/include/openssl/buffer.h" 3 4 struct buf_mem_st { size_t length; char *data; size_t max; }; BUF_MEM *BUF_MEM_new(void); void BUF_MEM_free(BUF_MEM *a); int BUF_MEM_grow(BUF_MEM *str, size_t len); int BUF_MEM_grow_clean(BUF_MEM *str, size_t len); char * BUF_strdup(const char *str); char * BUF_strndup(const char *str, size_t siz); void * BUF_memdup(const void *data, size_t siz); void BUF_reverse(unsigned char *out, const unsigned char *in, size_t siz); size_t BUF_strlcpy(char *dst,const char *src,size_t siz); size_t BUF_strlcat(char *dst,const char *src,size_t siz); void ERR_load_BUF_strings(void); # 117 "/usr/include/openssl/buffer.h" 3 4 } # 71 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/evp.h" 1 3 4 # 66 "/usr/include/openssl/evp.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 67 "/usr/include/openssl/evp.h" 2 3 4 # 79 "/usr/include/openssl/evp.h" 3 4 # 1 "/usr/include/openssl/fips.h" 1 3 4 # 50 "/usr/include/openssl/fips.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 51 "/usr/include/openssl/fips.h" 2 3 4 # 61 "/usr/include/openssl/fips.h" 3 4 extern "C" { struct dsa_st; struct rsa_st; struct evp_pkey_st; struct env_md_st; struct env_md_ctx_st; struct evp_cipher_st; struct evp_cipher_ctx_st; struct dh_method; struct CMAC_CTX_st; struct hmac_ctx_st; int FIPS_module_mode_set(int onoff, const char *auth); int FIPS_module_mode(void); int FIPS_module_installed(void); const void *FIPS_rand_check(void); int FIPS_selftest(void); int FIPS_selftest_failed(void); void FIPS_corrupt_sha1(void); int FIPS_selftest_sha1(void); int FIPS_selftest_sha2(void); void FIPS_corrupt_aes(void); int FIPS_selftest_aes_ccm(void); int FIPS_selftest_aes_gcm(void); int FIPS_selftest_aes_xts(void); int FIPS_selftest_aes(void); void FIPS_corrupt_des(void); int FIPS_selftest_des(void); void FIPS_corrupt_rsa(void); void FIPS_corrupt_rsa_keygen(void); int FIPS_selftest_rsa(void); void FIPS_corrupt_dsa(void); void FIPS_corrupt_dsa_keygen(void); int FIPS_selftest_dsa(void); int FIPS_selftest_ecdsa(void); int FIPS_selftest_ecdh(void); int FIPS_selftest_dh(void); void FIPS_corrupt_rng(void); void FIPS_rng_stick(void); void FIPS_x931_stick(int onoff); void FIPS_drbg_stick(int onoff); int FIPS_selftest_rng(void); int FIPS_selftest_x931(void); int FIPS_selftest_hmac(void); int FIPS_selftest_drbg(void); int FIPS_selftest_drbg_all(void); int FIPS_selftest_cmac(void); void FIPS_get_timevec(unsigned char *buf, unsigned long *pctr); int fips_pkey_signature_test(struct evp_pkey_st *pkey, const unsigned char *tbs, int tbslen, const unsigned char *kat, unsigned int katlen, const struct env_md_st *digest, unsigned int md_flags, const char *fail_str); int fips_cipher_test(struct evp_cipher_ctx_st *ctx, const struct evp_cipher_st *cipher, const unsigned char *key, const unsigned char *iv, const unsigned char *plaintext, const unsigned char *ciphertext, int len); void fips_set_selftest_fail(void); const struct env_md_st *FIPS_get_digestbynid(int nid); const struct evp_cipher_st *FIPS_get_cipherbynid(int nid); void ERR_load_FIPS_strings(void); # 281 "/usr/include/openssl/fips.h" 3 4 } # 80 "/usr/include/openssl/evp.h" 2 3 4 # 98 "/usr/include/openssl/evp.h" 3 4 # 1 "/usr/include/openssl/objects.h" 1 3 4 # 65 "/usr/include/openssl/objects.h" 3 4 # 1 "/usr/include/openssl/obj_mac.h" 1 3 4 # 66 "/usr/include/openssl/objects.h" 2 3 4 # 960 "/usr/include/openssl/objects.h" 3 4 # 1 "/usr/include/openssl/asn1.h" 1 3 4 # 62 "/usr/include/openssl/asn1.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 extern "C" { # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 86 "/usr/include/bits/time.h" 3 4 # 1 "/usr/include/bits/timex.h" 1 3 4 # 25 "/usr/include/bits/timex.h" 3 4 struct timex { unsigned int modes; __syscall_slong_t offset; __syscall_slong_t freq; __syscall_slong_t maxerror; __syscall_slong_t esterror; int status; __syscall_slong_t constant; __syscall_slong_t precision; __syscall_slong_t tolerance; struct timeval time; __syscall_slong_t tick; __syscall_slong_t ppsfreq; __syscall_slong_t jitter; int shift; __syscall_slong_t stabil; __syscall_slong_t jitcnt; __syscall_slong_t calcnt; __syscall_slong_t errcnt; __syscall_slong_t stbcnt; int tai; int :32; int :32; int :32; int :32; int :32; int :32; int :32; int :32; int :32; int :32; int :32; }; # 87 "/usr/include/bits/time.h" 2 3 4 extern "C" { extern int clock_adjtime (__clockid_t __clock_id, struct timex *__utx) throw (); } # 42 "/usr/include/time.h" 2 3 4 # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) throw (); extern time_t time (time_t *__timer) throw (); extern double difftime (time_t __time1, time_t __time0) throw () __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) throw (); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) throw (); extern char *strptime (const char *__restrict __s, const char *__restrict __fmt, struct tm *__tp) throw (); extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) throw (); extern char *strptime_l (const char *__restrict __s, const char *__restrict __fmt, struct tm *__tp, __locale_t __loc) throw (); extern struct tm *gmtime (const time_t *__timer) throw (); extern struct tm *localtime (const time_t *__timer) throw (); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) throw (); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) throw (); extern char *asctime (const struct tm *__tp) throw (); extern char *ctime (const time_t *__timer) throw (); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) throw (); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) throw (); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) throw (); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) throw (); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) throw (); extern time_t timelocal (struct tm *__tp) throw (); extern int dysize (int __year) throw () __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) throw (); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) throw (); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) throw (); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) throw (); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) throw (); extern int timer_delete (timer_t __timerid) throw (); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) throw (); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) throw (); extern int timer_getoverrun (timer_t __timerid) throw (); extern int timespec_get (struct timespec *__ts, int __base) throw () __attribute__ ((__nonnull__ (1))); # 403 "/usr/include/time.h" 3 4 extern int getdate_err; # 412 "/usr/include/time.h" 3 4 extern struct tm *getdate (const char *__string); # 426 "/usr/include/time.h" 3 4 extern int getdate_r (const char *__restrict __string, struct tm *__restrict __resbufp); } # 63 "/usr/include/openssl/asn1.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 64 "/usr/include/openssl/asn1.h" 2 3 4 # 74 "/usr/include/openssl/asn1.h" 3 4 # 1 "/usr/include/openssl/bn.h" 1 3 4 # 128 "/usr/include/openssl/bn.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 129 "/usr/include/openssl/bn.h" 2 3 4 extern "C" { # 318 "/usr/include/openssl/bn.h" 3 4 struct bignum_st { unsigned long *d; int top; int dmax; int neg; int flags; }; struct bn_mont_ctx_st { int ri; BIGNUM RR; BIGNUM N; BIGNUM Ni; unsigned long n0[2]; int flags; }; struct bn_recp_ctx_st { BIGNUM N; BIGNUM Nr; int num_bits; int shift; int flags; }; struct bn_gencb_st { unsigned int ver; void *arg; union { void (*cb_1)(int, int, void *); int (*cb_2)(int, int, BN_GENCB *); } cb; }; int BN_GENCB_call(BN_GENCB *cb, int a, int b); # 425 "/usr/include/openssl/bn.h" 3 4 const BIGNUM *BN_value_one(void); char * BN_options(void); BN_CTX *BN_CTX_new(void); void BN_CTX_init(BN_CTX *c); void BN_CTX_free(BN_CTX *c); void BN_CTX_start(BN_CTX *ctx); BIGNUM *BN_CTX_get(BN_CTX *ctx); void BN_CTX_end(BN_CTX *ctx); int BN_rand(BIGNUM *rnd, int bits, int top,int bottom); int BN_pseudo_rand(BIGNUM *rnd, int bits, int top,int bottom); int BN_rand_range(BIGNUM *rnd, const BIGNUM *range); int BN_pseudo_rand_range(BIGNUM *rnd, const BIGNUM *range); int BN_num_bits(const BIGNUM *a); int BN_num_bits_word(unsigned long); BIGNUM *BN_new(void); void BN_init(BIGNUM *); void BN_clear_free(BIGNUM *a); BIGNUM *BN_copy(BIGNUM *a, const BIGNUM *b); void BN_swap(BIGNUM *a, BIGNUM *b); BIGNUM *BN_bin2bn(const unsigned char *s,int len,BIGNUM *ret); int BN_bn2bin(const BIGNUM *a, unsigned char *to); BIGNUM *BN_mpi2bn(const unsigned char *s,int len,BIGNUM *ret); int BN_bn2mpi(const BIGNUM *a, unsigned char *to); int BN_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_usub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_uadd(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); int BN_sqr(BIGNUM *r, const BIGNUM *a,BN_CTX *ctx); void BN_set_negative(BIGNUM *b, int n); int BN_div(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx); int BN_nnmod(BIGNUM *r, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx); int BN_mod_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_add_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m); int BN_mod_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_sub_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m); int BN_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift1(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift1_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *m); int BN_mod_lshift(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift_quick(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m); unsigned long BN_mod_word(const BIGNUM *a, unsigned long w); unsigned long BN_div_word(BIGNUM *a, unsigned long w); int BN_mul_word(BIGNUM *a, unsigned long w); int BN_add_word(BIGNUM *a, unsigned long w); int BN_sub_word(BIGNUM *a, unsigned long w); int BN_set_word(BIGNUM *a, unsigned long w); unsigned long BN_get_word(const BIGNUM *a); int BN_cmp(const BIGNUM *a, const BIGNUM *b); void BN_free(BIGNUM *a); int BN_is_bit_set(const BIGNUM *a, int n); int BN_lshift(BIGNUM *r, const BIGNUM *a, int n); int BN_lshift1(BIGNUM *r, const BIGNUM *a); int BN_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p,BN_CTX *ctx); int BN_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx); int BN_mod_exp_mont(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int BN_mod_exp_mont_consttime(BIGNUM *rr, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont); int BN_mod_exp_mont_word(BIGNUM *r, unsigned long a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int BN_mod_exp2_mont(BIGNUM *r, const BIGNUM *a1, const BIGNUM *p1, const BIGNUM *a2, const BIGNUM *p2,const BIGNUM *m, BN_CTX *ctx,BN_MONT_CTX *m_ctx); int BN_mod_exp_simple(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx); int BN_mask_bits(BIGNUM *a,int n); int BN_print_fp(FILE *fp, const BIGNUM *a); int BN_print(BIO *fp, const BIGNUM *a); int BN_reciprocal(BIGNUM *r, const BIGNUM *m, int len, BN_CTX *ctx); int BN_rshift(BIGNUM *r, const BIGNUM *a, int n); int BN_rshift1(BIGNUM *r, const BIGNUM *a); void BN_clear(BIGNUM *a); BIGNUM *BN_dup(const BIGNUM *a); int BN_ucmp(const BIGNUM *a, const BIGNUM *b); int BN_set_bit(BIGNUM *a, int n); int BN_clear_bit(BIGNUM *a, int n); char * BN_bn2hex(const BIGNUM *a); char * BN_bn2dec(const BIGNUM *a); int BN_hex2bn(BIGNUM **a, const char *str); int BN_dec2bn(BIGNUM **a, const char *str); int BN_asc2bn(BIGNUM **a, const char *str); int BN_gcd(BIGNUM *r,const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx); int BN_kronecker(const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx); BIGNUM *BN_mod_inverse(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx); BIGNUM *BN_mod_sqrt(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx); void BN_consttime_swap(unsigned long swap, BIGNUM *a, BIGNUM *b, int nwords); BIGNUM *BN_generate_prime(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, void (*callback)(int,int,void *),void *cb_arg); int BN_is_prime(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *), BN_CTX *ctx,void *cb_arg); int BN_is_prime_fasttest(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *),BN_CTX *ctx,void *cb_arg, int do_trial_division); int BN_generate_prime_ex(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, BN_GENCB *cb); int BN_is_prime_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, BN_GENCB *cb); int BN_is_prime_fasttest_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, int do_trial_division, BN_GENCB *cb); int BN_X931_generate_Xpq(BIGNUM *Xp, BIGNUM *Xq, int nbits, BN_CTX *ctx); int BN_X931_derive_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, const BIGNUM *Xp, const BIGNUM *Xp1, const BIGNUM *Xp2, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb); int BN_X931_generate_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, BIGNUM *Xp1, BIGNUM *Xp2, const BIGNUM *Xp, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb); BN_MONT_CTX *BN_MONT_CTX_new(void ); void BN_MONT_CTX_init(BN_MONT_CTX *ctx); int BN_mod_mul_montgomery(BIGNUM *r,const BIGNUM *a,const BIGNUM *b, BN_MONT_CTX *mont, BN_CTX *ctx); int BN_from_montgomery(BIGNUM *r,const BIGNUM *a, BN_MONT_CTX *mont, BN_CTX *ctx); void BN_MONT_CTX_free(BN_MONT_CTX *mont); int BN_MONT_CTX_set(BN_MONT_CTX *mont,const BIGNUM *mod,BN_CTX *ctx); BN_MONT_CTX *BN_MONT_CTX_copy(BN_MONT_CTX *to,BN_MONT_CTX *from); BN_MONT_CTX *BN_MONT_CTX_set_locked(BN_MONT_CTX **pmont, int lock, const BIGNUM *mod, BN_CTX *ctx); BN_BLINDING *BN_BLINDING_new(const BIGNUM *A, const BIGNUM *Ai, BIGNUM *mod); void BN_BLINDING_free(BN_BLINDING *b); int BN_BLINDING_update(BN_BLINDING *b,BN_CTX *ctx); int BN_BLINDING_convert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx); int BN_BLINDING_invert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx); int BN_BLINDING_convert_ex(BIGNUM *n, BIGNUM *r, BN_BLINDING *b, BN_CTX *); int BN_BLINDING_invert_ex(BIGNUM *n, const BIGNUM *r, BN_BLINDING *b, BN_CTX *); unsigned long BN_BLINDING_get_thread_id(const BN_BLINDING *); void BN_BLINDING_set_thread_id(BN_BLINDING *, unsigned long); CRYPTO_THREADID *BN_BLINDING_thread_id(BN_BLINDING *); unsigned long BN_BLINDING_get_flags(const BN_BLINDING *); void BN_BLINDING_set_flags(BN_BLINDING *, unsigned long); BN_BLINDING *BN_BLINDING_create_param(BN_BLINDING *b, const BIGNUM *e, BIGNUM *m, BN_CTX *ctx, int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx), BN_MONT_CTX *m_ctx); void BN_set_params(int mul,int high,int low,int mont); int BN_get_params(int which); void BN_RECP_CTX_init(BN_RECP_CTX *recp); BN_RECP_CTX *BN_RECP_CTX_new(void); void BN_RECP_CTX_free(BN_RECP_CTX *recp); int BN_RECP_CTX_set(BN_RECP_CTX *recp,const BIGNUM *rdiv,BN_CTX *ctx); int BN_mod_mul_reciprocal(BIGNUM *r, const BIGNUM *x, const BIGNUM *y, BN_RECP_CTX *recp,BN_CTX *ctx); int BN_mod_exp_recp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx); int BN_div_recp(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, BN_RECP_CTX *recp, BN_CTX *ctx); int BN_nist_mod_192(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_224(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_256(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_384(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_521(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); const BIGNUM *BN_get0_nist_prime_192(void); const BIGNUM *BN_get0_nist_prime_224(void); const BIGNUM *BN_get0_nist_prime_256(void); const BIGNUM *BN_get0_nist_prime_384(void); const BIGNUM *BN_get0_nist_prime_521(void); BIGNUM *bn_expand2(BIGNUM *a, int words); BIGNUM *bn_dup_expand(const BIGNUM *a, int words); # 757 "/usr/include/openssl/bn.h" 3 4 unsigned long bn_mul_add_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w); unsigned long bn_mul_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w); void bn_sqr_words(unsigned long *rp, const unsigned long *ap, int num); unsigned long bn_div_words(unsigned long h, unsigned long l, unsigned long d); unsigned long bn_add_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num); unsigned long bn_sub_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num); BIGNUM *get_rfc2409_prime_768(BIGNUM *bn); BIGNUM *get_rfc2409_prime_1024(BIGNUM *bn); BIGNUM *get_rfc3526_prime_1536(BIGNUM *bn); BIGNUM *get_rfc3526_prime_2048(BIGNUM *bn); BIGNUM *get_rfc3526_prime_3072(BIGNUM *bn); BIGNUM *get_rfc3526_prime_4096(BIGNUM *bn); BIGNUM *get_rfc3526_prime_6144(BIGNUM *bn); BIGNUM *get_rfc3526_prime_8192(BIGNUM *bn); int BN_bntest_rand(BIGNUM *rnd, int bits, int top,int bottom); void ERR_load_BN_strings(void); # 848 "/usr/include/openssl/bn.h" 3 4 } # 75 "/usr/include/openssl/asn1.h" 2 3 4 # 83 "/usr/include/openssl/asn1.h" 3 4 extern "C" { # 165 "/usr/include/openssl/asn1.h" 3 4 struct X509_algor_st; struct stack_st_X509_ALGOR { _STACK stack; }; # 175 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_ctx_st { unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; unsigned char *max; unsigned char *q; unsigned char **pp; int line; } ASN1_CTX; typedef struct asn1_const_ctx_st { const unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; const unsigned char *max; const unsigned char *q; const unsigned char **pp; int line; } ASN1_const_CTX; typedef struct asn1_object_st { const char *sn,*ln; int nid; int length; const unsigned char *data; int flags; } ASN1_OBJECT; # 238 "/usr/include/openssl/asn1.h" 3 4 struct asn1_string_st { int length; int type; unsigned char *data; long flags; }; typedef struct ASN1_ENCODING_st { unsigned char *enc; long len; int modified; } ASN1_ENCODING; # 271 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_string_table_st { int nid; long minsize; long maxsize; unsigned long mask; unsigned long flags; } ASN1_STRING_TABLE; struct stack_st_ASN1_STRING_TABLE { _STACK stack; }; # 295 "/usr/include/openssl/asn1.h" 3 4 typedef struct ASN1_TEMPLATE_st ASN1_TEMPLATE; typedef struct ASN1_TLC_st ASN1_TLC; typedef struct ASN1_VALUE_st ASN1_VALUE; # 362 "/usr/include/openssl/asn1.h" 3 4 typedef void *d2i_of_void(void **,const unsigned char **,long); typedef int i2d_of_void(void *,unsigned char **); # 402 "/usr/include/openssl/asn1.h" 3 4 typedef const ASN1_ITEM ASN1_ITEM_EXP; # 516 "/usr/include/openssl/asn1.h" 3 4 struct stack_st_ASN1_INTEGER { _STACK stack; }; struct stack_st_ASN1_GENERALSTRING { _STACK stack; }; typedef struct asn1_type_st { int type; union { char *ptr; ASN1_BOOLEAN boolean; ASN1_STRING * asn1_string; ASN1_OBJECT * object; ASN1_INTEGER * integer; ASN1_ENUMERATED * enumerated; ASN1_BIT_STRING * bit_string; ASN1_OCTET_STRING * octet_string; ASN1_PRINTABLESTRING * printablestring; ASN1_T61STRING * t61string; ASN1_IA5STRING * ia5string; ASN1_GENERALSTRING * generalstring; ASN1_BMPSTRING * bmpstring; ASN1_UNIVERSALSTRING * universalstring; ASN1_UTCTIME * utctime; ASN1_GENERALIZEDTIME * generalizedtime; ASN1_VISIBLESTRING * visiblestring; ASN1_UTF8STRING * utf8string; ASN1_STRING * set; ASN1_STRING * sequence; ASN1_VALUE * asn1_value; } value; } ASN1_TYPE; struct stack_st_ASN1_TYPE { _STACK stack; }; typedef struct stack_st_ASN1_TYPE ASN1_SEQUENCE_ANY; ASN1_SEQUENCE_ANY *d2i_ASN1_SEQUENCE_ANY(ASN1_SEQUENCE_ANY **a, const unsigned char **in, long len); int i2d_ASN1_SEQUENCE_ANY(const ASN1_SEQUENCE_ANY *a, unsigned char **out); extern const ASN1_ITEM ASN1_SEQUENCE_ANY_it; ASN1_SEQUENCE_ANY *d2i_ASN1_SET_ANY(ASN1_SEQUENCE_ANY **a, const unsigned char **in, long len); int i2d_ASN1_SET_ANY(const ASN1_SEQUENCE_ANY *a, unsigned char **out); extern const ASN1_ITEM ASN1_SET_ANY_it; typedef struct NETSCAPE_X509_st { ASN1_OCTET_STRING *header; X509 *cert; } NETSCAPE_X509; typedef struct BIT_STRING_BITNAME_st { int bitnum; const char *lname; const char *sname; } BIT_STRING_BITNAME; # 774 "/usr/include/openssl/asn1.h" 3 4 ASN1_TYPE *ASN1_TYPE_new(void); void ASN1_TYPE_free(ASN1_TYPE *a); ASN1_TYPE *d2i_ASN1_TYPE(ASN1_TYPE **a, const unsigned char **in, long len); int i2d_ASN1_TYPE(ASN1_TYPE *a, unsigned char **out); extern const ASN1_ITEM ASN1_ANY_it; int ASN1_TYPE_get(ASN1_TYPE *a); void ASN1_TYPE_set(ASN1_TYPE *a, int type, void *value); int ASN1_TYPE_set1(ASN1_TYPE *a, int type, const void *value); int ASN1_TYPE_cmp(const ASN1_TYPE *a, const ASN1_TYPE *b); ASN1_OBJECT * ASN1_OBJECT_new(void ); void ASN1_OBJECT_free(ASN1_OBJECT *a); int i2d_ASN1_OBJECT(ASN1_OBJECT *a,unsigned char **pp); ASN1_OBJECT * c2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length); ASN1_OBJECT * d2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length); extern const ASN1_ITEM ASN1_OBJECT_it; struct stack_st_ASN1_OBJECT { _STACK stack; }; ASN1_STRING * ASN1_STRING_new(void); void ASN1_STRING_free(ASN1_STRING *a); int ASN1_STRING_copy(ASN1_STRING *dst, const ASN1_STRING *str); ASN1_STRING * ASN1_STRING_dup(const ASN1_STRING *a); ASN1_STRING * ASN1_STRING_type_new(int type ); int ASN1_STRING_cmp(const ASN1_STRING *a, const ASN1_STRING *b); int ASN1_STRING_set(ASN1_STRING *str, const void *data, int len); void ASN1_STRING_set0(ASN1_STRING *str, void *data, int len); int ASN1_STRING_length(const ASN1_STRING *x); void ASN1_STRING_length_set(ASN1_STRING *x, int n); int ASN1_STRING_type(ASN1_STRING *x); unsigned char * ASN1_STRING_data(ASN1_STRING *x); ASN1_BIT_STRING *ASN1_BIT_STRING_new(void); void ASN1_BIT_STRING_free(ASN1_BIT_STRING *a); ASN1_BIT_STRING *d2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a, const unsigned char **in, long len); int i2d_ASN1_BIT_STRING(ASN1_BIT_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_BIT_STRING_it; int i2c_ASN1_BIT_STRING(ASN1_BIT_STRING *a,unsigned char **pp); ASN1_BIT_STRING *c2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a,const unsigned char **pp, long length); int ASN1_BIT_STRING_set(ASN1_BIT_STRING *a, unsigned char *d, int length ); int ASN1_BIT_STRING_set_bit(ASN1_BIT_STRING *a, int n, int value); int ASN1_BIT_STRING_get_bit(ASN1_BIT_STRING *a, int n); int ASN1_BIT_STRING_check(ASN1_BIT_STRING *a, unsigned char *flags, int flags_len); int ASN1_BIT_STRING_name_print(BIO *out, ASN1_BIT_STRING *bs, BIT_STRING_BITNAME *tbl, int indent); int ASN1_BIT_STRING_num_asc(char *name, BIT_STRING_BITNAME *tbl); int ASN1_BIT_STRING_set_asc(ASN1_BIT_STRING *bs, char *name, int value, BIT_STRING_BITNAME *tbl); int i2d_ASN1_BOOLEAN(int a,unsigned char **pp); int d2i_ASN1_BOOLEAN(int *a,const unsigned char **pp,long length); ASN1_INTEGER *ASN1_INTEGER_new(void); void ASN1_INTEGER_free(ASN1_INTEGER *a); ASN1_INTEGER *d2i_ASN1_INTEGER(ASN1_INTEGER **a, const unsigned char **in, long len); int i2d_ASN1_INTEGER(ASN1_INTEGER *a, unsigned char **out); extern const ASN1_ITEM ASN1_INTEGER_it; int i2c_ASN1_INTEGER(ASN1_INTEGER *a,unsigned char **pp); ASN1_INTEGER *c2i_ASN1_INTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length); ASN1_INTEGER *d2i_ASN1_UINTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length); ASN1_INTEGER * ASN1_INTEGER_dup(const ASN1_INTEGER *x); int ASN1_INTEGER_cmp(const ASN1_INTEGER *x, const ASN1_INTEGER *y); ASN1_ENUMERATED *ASN1_ENUMERATED_new(void); void ASN1_ENUMERATED_free(ASN1_ENUMERATED *a); ASN1_ENUMERATED *d2i_ASN1_ENUMERATED(ASN1_ENUMERATED **a, const unsigned char **in, long len); int i2d_ASN1_ENUMERATED(ASN1_ENUMERATED *a, unsigned char **out); extern const ASN1_ITEM ASN1_ENUMERATED_it; int ASN1_UTCTIME_check(ASN1_UTCTIME *a); ASN1_UTCTIME *ASN1_UTCTIME_set(ASN1_UTCTIME *s,time_t t); ASN1_UTCTIME *ASN1_UTCTIME_adj(ASN1_UTCTIME *s, time_t t, int offset_day, long offset_sec); int ASN1_UTCTIME_set_string(ASN1_UTCTIME *s, const char *str); int ASN1_UTCTIME_cmp_time_t(const ASN1_UTCTIME *s, time_t t); int ASN1_GENERALIZEDTIME_check(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_set(ASN1_GENERALIZEDTIME *s,time_t t); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_adj(ASN1_GENERALIZEDTIME *s, time_t t, int offset_day, long offset_sec); int ASN1_GENERALIZEDTIME_set_string(ASN1_GENERALIZEDTIME *s, const char *str); ASN1_OCTET_STRING *ASN1_OCTET_STRING_new(void); void ASN1_OCTET_STRING_free(ASN1_OCTET_STRING *a); ASN1_OCTET_STRING *d2i_ASN1_OCTET_STRING(ASN1_OCTET_STRING **a, const unsigned char **in, long len); int i2d_ASN1_OCTET_STRING(ASN1_OCTET_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_OCTET_STRING_it; ASN1_OCTET_STRING * ASN1_OCTET_STRING_dup(const ASN1_OCTET_STRING *a); int ASN1_OCTET_STRING_cmp(const ASN1_OCTET_STRING *a, const ASN1_OCTET_STRING *b); int ASN1_OCTET_STRING_set(ASN1_OCTET_STRING *str, const unsigned char *data, int len); ASN1_VISIBLESTRING *ASN1_VISIBLESTRING_new(void); void ASN1_VISIBLESTRING_free(ASN1_VISIBLESTRING *a); ASN1_VISIBLESTRING *d2i_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING **a, const unsigned char **in, long len); int i2d_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_VISIBLESTRING_it; ASN1_UNIVERSALSTRING *ASN1_UNIVERSALSTRING_new(void); void ASN1_UNIVERSALSTRING_free(ASN1_UNIVERSALSTRING *a); ASN1_UNIVERSALSTRING *d2i_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING **a, const unsigned char **in, long len); int i2d_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_UNIVERSALSTRING_it; ASN1_UTF8STRING *ASN1_UTF8STRING_new(void); void ASN1_UTF8STRING_free(ASN1_UTF8STRING *a); ASN1_UTF8STRING *d2i_ASN1_UTF8STRING(ASN1_UTF8STRING **a, const unsigned char **in, long len); int i2d_ASN1_UTF8STRING(ASN1_UTF8STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_UTF8STRING_it; ASN1_NULL *ASN1_NULL_new(void); void ASN1_NULL_free(ASN1_NULL *a); ASN1_NULL *d2i_ASN1_NULL(ASN1_NULL **a, const unsigned char **in, long len); int i2d_ASN1_NULL(ASN1_NULL *a, unsigned char **out); extern const ASN1_ITEM ASN1_NULL_it; ASN1_BMPSTRING *ASN1_BMPSTRING_new(void); void ASN1_BMPSTRING_free(ASN1_BMPSTRING *a); ASN1_BMPSTRING *d2i_ASN1_BMPSTRING(ASN1_BMPSTRING **a, const unsigned char **in, long len); int i2d_ASN1_BMPSTRING(ASN1_BMPSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_BMPSTRING_it; int UTF8_getc(const unsigned char *str, int len, unsigned long *val); int UTF8_putc(unsigned char *str, int len, unsigned long value); ASN1_STRING *ASN1_PRINTABLE_new(void); void ASN1_PRINTABLE_free(ASN1_STRING *a); ASN1_STRING *d2i_ASN1_PRINTABLE(ASN1_STRING **a, const unsigned char **in, long len); int i2d_ASN1_PRINTABLE(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_PRINTABLE_it; ASN1_STRING *DIRECTORYSTRING_new(void); void DIRECTORYSTRING_free(ASN1_STRING *a); ASN1_STRING *d2i_DIRECTORYSTRING(ASN1_STRING **a, const unsigned char **in, long len); int i2d_DIRECTORYSTRING(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM DIRECTORYSTRING_it; ASN1_STRING *DISPLAYTEXT_new(void); void DISPLAYTEXT_free(ASN1_STRING *a); ASN1_STRING *d2i_DISPLAYTEXT(ASN1_STRING **a, const unsigned char **in, long len); int i2d_DISPLAYTEXT(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM DISPLAYTEXT_it; ASN1_PRINTABLESTRING *ASN1_PRINTABLESTRING_new(void); void ASN1_PRINTABLESTRING_free(ASN1_PRINTABLESTRING *a); ASN1_PRINTABLESTRING *d2i_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING **a, const unsigned char **in, long len); int i2d_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_PRINTABLESTRING_it; ASN1_T61STRING *ASN1_T61STRING_new(void); void ASN1_T61STRING_free(ASN1_T61STRING *a); ASN1_T61STRING *d2i_ASN1_T61STRING(ASN1_T61STRING **a, const unsigned char **in, long len); int i2d_ASN1_T61STRING(ASN1_T61STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_T61STRING_it; ASN1_IA5STRING *ASN1_IA5STRING_new(void); void ASN1_IA5STRING_free(ASN1_IA5STRING *a); ASN1_IA5STRING *d2i_ASN1_IA5STRING(ASN1_IA5STRING **a, const unsigned char **in, long len); int i2d_ASN1_IA5STRING(ASN1_IA5STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_IA5STRING_it; ASN1_GENERALSTRING *ASN1_GENERALSTRING_new(void); void ASN1_GENERALSTRING_free(ASN1_GENERALSTRING *a); ASN1_GENERALSTRING *d2i_ASN1_GENERALSTRING(ASN1_GENERALSTRING **a, const unsigned char **in, long len); int i2d_ASN1_GENERALSTRING(ASN1_GENERALSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_GENERALSTRING_it; ASN1_UTCTIME *ASN1_UTCTIME_new(void); void ASN1_UTCTIME_free(ASN1_UTCTIME *a); ASN1_UTCTIME *d2i_ASN1_UTCTIME(ASN1_UTCTIME **a, const unsigned char **in, long len); int i2d_ASN1_UTCTIME(ASN1_UTCTIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_UTCTIME_it; ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_new(void); void ASN1_GENERALIZEDTIME_free(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *d2i_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME **a, const unsigned char **in, long len); int i2d_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_GENERALIZEDTIME_it; ASN1_TIME *ASN1_TIME_new(void); void ASN1_TIME_free(ASN1_TIME *a); ASN1_TIME *d2i_ASN1_TIME(ASN1_TIME **a, const unsigned char **in, long len); int i2d_ASN1_TIME(ASN1_TIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_TIME_it; extern const ASN1_ITEM ASN1_OCTET_STRING_NDEF_it; ASN1_TIME *ASN1_TIME_set(ASN1_TIME *s,time_t t); ASN1_TIME *ASN1_TIME_adj(ASN1_TIME *s,time_t t, int offset_day, long offset_sec); int ASN1_TIME_check(ASN1_TIME *t); ASN1_GENERALIZEDTIME *ASN1_TIME_to_generalizedtime(ASN1_TIME *t, ASN1_GENERALIZEDTIME **out); int ASN1_TIME_set_string(ASN1_TIME *s, const char *str); int i2d_ASN1_SET(struct stack_st_OPENSSL_BLOCK *a, unsigned char **pp, i2d_of_void *i2d, int ex_tag, int ex_class, int is_set); struct stack_st_OPENSSL_BLOCK *d2i_ASN1_SET(struct stack_st_OPENSSL_BLOCK **a, const unsigned char **pp, long length, d2i_of_void *d2i, void (*free_func)(OPENSSL_BLOCK), int ex_tag, int ex_class); int i2a_ASN1_INTEGER(BIO *bp, ASN1_INTEGER *a); int a2i_ASN1_INTEGER(BIO *bp,ASN1_INTEGER *bs,char *buf,int size); int i2a_ASN1_ENUMERATED(BIO *bp, ASN1_ENUMERATED *a); int a2i_ASN1_ENUMERATED(BIO *bp,ASN1_ENUMERATED *bs,char *buf,int size); int i2a_ASN1_OBJECT(BIO *bp,ASN1_OBJECT *a); int a2i_ASN1_STRING(BIO *bp,ASN1_STRING *bs,char *buf,int size); int i2a_ASN1_STRING(BIO *bp, ASN1_STRING *a, int type); int i2t_ASN1_OBJECT(char *buf,int buf_len,ASN1_OBJECT *a); int a2d_ASN1_OBJECT(unsigned char *out,int olen, const char *buf, int num); ASN1_OBJECT *ASN1_OBJECT_create(int nid, unsigned char *data,int len, const char *sn, const char *ln); int ASN1_INTEGER_set(ASN1_INTEGER *a, long v); long ASN1_INTEGER_get(const ASN1_INTEGER *a); ASN1_INTEGER *BN_to_ASN1_INTEGER(const BIGNUM *bn, ASN1_INTEGER *ai); BIGNUM *ASN1_INTEGER_to_BN(const ASN1_INTEGER *ai,BIGNUM *bn); int ASN1_ENUMERATED_set(ASN1_ENUMERATED *a, long v); long ASN1_ENUMERATED_get(ASN1_ENUMERATED *a); ASN1_ENUMERATED *BN_to_ASN1_ENUMERATED(BIGNUM *bn, ASN1_ENUMERATED *ai); BIGNUM *ASN1_ENUMERATED_to_BN(ASN1_ENUMERATED *ai,BIGNUM *bn); int ASN1_PRINTABLE_type(const unsigned char *s, int max); int i2d_ASN1_bytes(ASN1_STRING *a, unsigned char **pp, int tag, int xclass); ASN1_STRING *d2i_ASN1_bytes(ASN1_STRING **a, const unsigned char **pp, long length, int Ptag, int Pclass); unsigned long ASN1_tag2bit(int tag); ASN1_STRING *d2i_ASN1_type_bytes(ASN1_STRING **a,const unsigned char **pp, long length,int type); int asn1_Finish(ASN1_CTX *c); int asn1_const_Finish(ASN1_const_CTX *c); int ASN1_get_object(const unsigned char **pp, long *plength, int *ptag, int *pclass, long omax); int ASN1_check_infinite_end(unsigned char **p,long len); int ASN1_const_check_infinite_end(const unsigned char **p,long len); void ASN1_put_object(unsigned char **pp, int constructed, int length, int tag, int xclass); int ASN1_put_eoc(unsigned char **pp); int ASN1_object_size(int constructed, int length, int tag); void *ASN1_dup(i2d_of_void *i2d, d2i_of_void *d2i, void *x); # 966 "/usr/include/openssl/asn1.h" 3 4 void *ASN1_item_dup(const ASN1_ITEM *it, void *x); # 975 "/usr/include/openssl/asn1.h" 3 4 void *ASN1_d2i_fp(void *(*xnew)(void), d2i_of_void *d2i, FILE *in, void **x); void *ASN1_item_d2i_fp(const ASN1_ITEM *it, FILE *in, void *x); int ASN1_i2d_fp(i2d_of_void *i2d,FILE *out,void *x); # 996 "/usr/include/openssl/asn1.h" 3 4 int ASN1_item_i2d_fp(const ASN1_ITEM *it, FILE *out, void *x); int ASN1_STRING_print_ex_fp(FILE *fp, ASN1_STRING *str, unsigned long flags); int ASN1_STRING_to_UTF8(unsigned char **out, ASN1_STRING *in); void *ASN1_d2i_bio(void *(*xnew)(void), d2i_of_void *d2i, BIO *in, void **x); void *ASN1_item_d2i_bio(const ASN1_ITEM *it, BIO *in, void *x); int ASN1_i2d_bio(i2d_of_void *i2d,BIO *out, unsigned char *x); # 1024 "/usr/include/openssl/asn1.h" 3 4 int ASN1_item_i2d_bio(const ASN1_ITEM *it, BIO *out, void *x); int ASN1_UTCTIME_print(BIO *fp, const ASN1_UTCTIME *a); int ASN1_GENERALIZEDTIME_print(BIO *fp, const ASN1_GENERALIZEDTIME *a); int ASN1_TIME_print(BIO *fp, const ASN1_TIME *a); int ASN1_STRING_print(BIO *bp, const ASN1_STRING *v); int ASN1_STRING_print_ex(BIO *out, ASN1_STRING *str, unsigned long flags); int ASN1_bn_print(BIO *bp, const char *number, const BIGNUM *num, unsigned char *buf, int off); int ASN1_parse(BIO *bp,const unsigned char *pp,long len,int indent); int ASN1_parse_dump(BIO *bp,const unsigned char *pp,long len,int indent,int dump); const char *ASN1_tag2str(int tag); NETSCAPE_X509 *NETSCAPE_X509_new(void); void NETSCAPE_X509_free(NETSCAPE_X509 *a); NETSCAPE_X509 *d2i_NETSCAPE_X509(NETSCAPE_X509 **a, const unsigned char **in, long len); int i2d_NETSCAPE_X509(NETSCAPE_X509 *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_X509_it; int ASN1_UNIVERSALSTRING_to_string(ASN1_UNIVERSALSTRING *s); int ASN1_TYPE_set_octetstring(ASN1_TYPE *a, unsigned char *data, int len); int ASN1_TYPE_get_octetstring(ASN1_TYPE *a, unsigned char *data, int max_len); int ASN1_TYPE_set_int_octetstring(ASN1_TYPE *a, long num, unsigned char *data, int len); int ASN1_TYPE_get_int_octetstring(ASN1_TYPE *a,long *num, unsigned char *data, int max_len); struct stack_st_OPENSSL_BLOCK *ASN1_seq_unpack(const unsigned char *buf, int len, d2i_of_void *d2i, void (*free_func)(OPENSSL_BLOCK)); unsigned char *ASN1_seq_pack(struct stack_st_OPENSSL_BLOCK *safes, i2d_of_void *i2d, unsigned char **buf, int *len ); void *ASN1_unpack_string(ASN1_STRING *oct, d2i_of_void *d2i); void *ASN1_item_unpack(ASN1_STRING *oct, const ASN1_ITEM *it); ASN1_STRING *ASN1_pack_string(void *obj, i2d_of_void *i2d, ASN1_OCTET_STRING **oct); ASN1_STRING *ASN1_item_pack(void *obj, const ASN1_ITEM *it, ASN1_OCTET_STRING **oct); void ASN1_STRING_set_default_mask(unsigned long mask); int ASN1_STRING_set_default_mask_asc(const char *p); unsigned long ASN1_STRING_get_default_mask(void); int ASN1_mbstring_copy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask); int ASN1_mbstring_ncopy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask, long minsize, long maxsize); ASN1_STRING *ASN1_STRING_set_by_NID(ASN1_STRING **out, const unsigned char *in, int inlen, int inform, int nid); ASN1_STRING_TABLE *ASN1_STRING_TABLE_get(int nid); int ASN1_STRING_TABLE_add(int, long, long, unsigned long, unsigned long); void ASN1_STRING_TABLE_cleanup(void); ASN1_VALUE *ASN1_item_new(const ASN1_ITEM *it); void ASN1_item_free(ASN1_VALUE *val, const ASN1_ITEM *it); ASN1_VALUE * ASN1_item_d2i(ASN1_VALUE **val, const unsigned char **in, long len, const ASN1_ITEM *it); int ASN1_item_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it); int ASN1_item_ndef_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it); void ASN1_add_oid_module(void); ASN1_TYPE *ASN1_generate_nconf(char *str, CONF *nconf); ASN1_TYPE *ASN1_generate_v3(char *str, X509V3_CTX *cnf); # 1118 "/usr/include/openssl/asn1.h" 3 4 int ASN1_item_print(BIO *out, ASN1_VALUE *ifld, int indent, const ASN1_ITEM *it, const ASN1_PCTX *pctx); ASN1_PCTX *ASN1_PCTX_new(void); void ASN1_PCTX_free(ASN1_PCTX *p); unsigned long ASN1_PCTX_get_flags(ASN1_PCTX *p); void ASN1_PCTX_set_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_nm_flags(ASN1_PCTX *p); void ASN1_PCTX_set_nm_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_cert_flags(ASN1_PCTX *p); void ASN1_PCTX_set_cert_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_oid_flags(ASN1_PCTX *p); void ASN1_PCTX_set_oid_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_str_flags(ASN1_PCTX *p); void ASN1_PCTX_set_str_flags(ASN1_PCTX *p, unsigned long flags); BIO_METHOD *BIO_f_asn1(void); BIO *BIO_new_NDEF(BIO *out, ASN1_VALUE *val, const ASN1_ITEM *it); int i2d_ASN1_bio_stream(BIO *out, ASN1_VALUE *val, BIO *in, int flags, const ASN1_ITEM *it); int PEM_write_bio_ASN1_stream(BIO *out, ASN1_VALUE *val, BIO *in, int flags, const char *hdr, const ASN1_ITEM *it); int SMIME_write_ASN1(BIO *bio, ASN1_VALUE *val, BIO *data, int flags, int ctype_nid, int econt_nid, struct stack_st_X509_ALGOR *mdalgs, const ASN1_ITEM *it); ASN1_VALUE *SMIME_read_ASN1(BIO *bio, BIO **bcont, const ASN1_ITEM *it); int SMIME_crlf_copy(BIO *in, BIO *out, int flags); int SMIME_text(BIO *in, BIO *out); void ERR_load_ASN1_strings(void); # 1404 "/usr/include/openssl/asn1.h" 3 4 } # 961 "/usr/include/openssl/objects.h" 2 3 4 # 976 "/usr/include/openssl/objects.h" 3 4 extern "C" { typedef struct obj_name_st { int type; int alias; const char *name; const char *data; } OBJ_NAME; int OBJ_NAME_init(void); int OBJ_NAME_new_index(unsigned long (*hash_func)(const char *), int (*cmp_func)(const char *, const char *), void (*free_func)(const char *, int, const char *)); const char *OBJ_NAME_get(const char *name,int type); int OBJ_NAME_add(const char *name,int type,const char *data); int OBJ_NAME_remove(const char *name,int type); void OBJ_NAME_cleanup(int type); void OBJ_NAME_do_all(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg); void OBJ_NAME_do_all_sorted(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg); ASN1_OBJECT * OBJ_dup(const ASN1_OBJECT *o); ASN1_OBJECT * OBJ_nid2obj(int n); const char * OBJ_nid2ln(int n); const char * OBJ_nid2sn(int n); int OBJ_obj2nid(const ASN1_OBJECT *o); ASN1_OBJECT * OBJ_txt2obj(const char *s, int no_name); int OBJ_obj2txt(char *buf, int buf_len, const ASN1_OBJECT *a, int no_name); int OBJ_txt2nid(const char *s); int OBJ_ln2nid(const char *s); int OBJ_sn2nid(const char *s); int OBJ_cmp(const ASN1_OBJECT *a,const ASN1_OBJECT *b); const void * OBJ_bsearch_(const void *key,const void *base,int num,int size, int (*cmp)(const void *, const void *)); const void * OBJ_bsearch_ex_(const void *key,const void *base,int num, int size, int (*cmp)(const void *, const void *), int flags); # 1100 "/usr/include/openssl/objects.h" 3 4 int OBJ_new_nid(int num); int OBJ_add_object(const ASN1_OBJECT *obj); int OBJ_create(const char *oid,const char *sn,const char *ln); void OBJ_cleanup(void ); int OBJ_create_objects(BIO *in); int OBJ_find_sigid_algs(int signid, int *pdig_nid, int *ppkey_nid); int OBJ_find_sigid_by_algs(int *psignid, int dig_nid, int pkey_nid); int OBJ_add_sigid(int signid, int dig_id, int pkey_id); void OBJ_sigid_free(void); extern int obj_cleanup_defer; void check_defer(int nid); void ERR_load_OBJ_strings(void); # 1136 "/usr/include/openssl/objects.h" 3 4 } # 99 "/usr/include/openssl/evp.h" 2 3 4 # 126 "/usr/include/openssl/evp.h" 3 4 extern "C" { struct evp_pkey_st { int type; int save_type; int references; const EVP_PKEY_ASN1_METHOD *ameth; ENGINE *engine; union { char *ptr; struct rsa_st *rsa; struct dsa_st *dsa; struct dh_st *dh; struct ec_key_st *ec; } pkey; int save_parameters; struct stack_st_X509_ATTRIBUTE *attributes; } ; struct env_md_st { int type; int pkey_type; int md_size; unsigned long flags; int (*init)(EVP_MD_CTX *ctx); int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count); int (*final)(EVP_MD_CTX *ctx,unsigned char *md); int (*copy)(EVP_MD_CTX *to,const EVP_MD_CTX *from); int (*cleanup)(EVP_MD_CTX *ctx); int (*sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, void *key); int (*verify)(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, void *key); int required_pkey_type[5]; int block_size; int ctx_size; int (*md_ctrl)(EVP_MD_CTX *ctx, int cmd, int p1, void *p2); } ; typedef int evp_sign_method(int type,const unsigned char *m, unsigned int m_length,unsigned char *sigret, unsigned int *siglen, void *key); typedef int evp_verify_method(int type,const unsigned char *m, unsigned int m_length,const unsigned char *sigbuf, unsigned int siglen, void *key); # 269 "/usr/include/openssl/evp.h" 3 4 struct env_md_ctx_st { const EVP_MD *digest; ENGINE *engine; unsigned long flags; void *md_data; EVP_PKEY_CTX *pctx; int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count); } ; # 307 "/usr/include/openssl/evp.h" 3 4 struct evp_cipher_st { int nid; int block_size; int key_len; int iv_len; unsigned long flags; int (*init)(EVP_CIPHER_CTX *ctx, const unsigned char *key, const unsigned char *iv, int enc); int (*do_cipher)(EVP_CIPHER_CTX *ctx, unsigned char *out, const unsigned char *in, size_t inl); int (*cleanup)(EVP_CIPHER_CTX *); int ctx_size; int (*set_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *); int (*get_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *); int (*ctrl)(EVP_CIPHER_CTX *, int type, int arg, void *ptr); void *app_data; } ; # 417 "/usr/include/openssl/evp.h" 3 4 typedef struct evp_cipher_info_st { const EVP_CIPHER *cipher; unsigned char iv[16]; } EVP_CIPHER_INFO; struct evp_cipher_ctx_st { const EVP_CIPHER *cipher; ENGINE *engine; int encrypt; int buf_len; unsigned char oiv[16]; unsigned char iv[16]; unsigned char buf[32]; int num; void *app_data; int key_len; unsigned long flags; void *cipher_data; int final_used; int block_mask; unsigned char final[32]; } ; typedef struct evp_Encode_Ctx_st { int num; int length; unsigned char enc_data[80]; int line_num; int expect_nl; } EVP_ENCODE_CTX; typedef int (EVP_PBE_KEYGEN)(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); # 488 "/usr/include/openssl/evp.h" 3 4 int EVP_MD_type(const EVP_MD *md); int EVP_MD_pkey_type(const EVP_MD *md); int EVP_MD_size(const EVP_MD *md); int EVP_MD_block_size(const EVP_MD *md); unsigned long EVP_MD_flags(const EVP_MD *md); const EVP_MD *EVP_MD_CTX_md(const EVP_MD_CTX *ctx); int EVP_CIPHER_nid(const EVP_CIPHER *cipher); int EVP_CIPHER_block_size(const EVP_CIPHER *cipher); int EVP_CIPHER_key_length(const EVP_CIPHER *cipher); int EVP_CIPHER_iv_length(const EVP_CIPHER *cipher); unsigned long EVP_CIPHER_flags(const EVP_CIPHER *cipher); const EVP_CIPHER * EVP_CIPHER_CTX_cipher(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_nid(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_block_size(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_key_length(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_iv_length(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_copy(EVP_CIPHER_CTX *out, const EVP_CIPHER_CTX *in); void * EVP_CIPHER_CTX_get_app_data(const EVP_CIPHER_CTX *ctx); void EVP_CIPHER_CTX_set_app_data(EVP_CIPHER_CTX *ctx, void *data); unsigned long EVP_CIPHER_CTX_flags(const EVP_CIPHER_CTX *ctx); # 546 "/usr/include/openssl/evp.h" 3 4 int EVP_Cipher(EVP_CIPHER_CTX *c, unsigned char *out, const unsigned char *in, unsigned int inl); # 560 "/usr/include/openssl/evp.h" 3 4 void EVP_MD_CTX_init(EVP_MD_CTX *ctx); int EVP_MD_CTX_cleanup(EVP_MD_CTX *ctx); EVP_MD_CTX *EVP_MD_CTX_create(void); void EVP_MD_CTX_destroy(EVP_MD_CTX *ctx); int EVP_MD_CTX_copy_ex(EVP_MD_CTX *out,const EVP_MD_CTX *in); void EVP_MD_CTX_set_flags(EVP_MD_CTX *ctx, int flags); void EVP_MD_CTX_clear_flags(EVP_MD_CTX *ctx, int flags); int EVP_MD_CTX_test_flags(const EVP_MD_CTX *ctx,int flags); int EVP_DigestInit_ex(EVP_MD_CTX *ctx, const EVP_MD *type, ENGINE *impl); int EVP_DigestUpdate(EVP_MD_CTX *ctx,const void *d, size_t cnt); int EVP_DigestFinal_ex(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s); int EVP_Digest(const void *data, size_t count, unsigned char *md, unsigned int *size, const EVP_MD *type, ENGINE *impl); int EVP_MD_CTX_copy(EVP_MD_CTX *out,const EVP_MD_CTX *in); int EVP_DigestInit(EVP_MD_CTX *ctx, const EVP_MD *type); int EVP_DigestFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s); int EVP_read_pw_string(char *buf,int length,const char *prompt,int verify); int EVP_read_pw_string_min(char *buf,int minlen,int maxlen,const char *prompt,int verify); void EVP_set_pw_prompt(const char *prompt); char * EVP_get_pw_prompt(void); int EVP_BytesToKey(const EVP_CIPHER *type,const EVP_MD *md, const unsigned char *salt, const unsigned char *data, int datal, int count, unsigned char *key,unsigned char *iv); void EVP_CIPHER_CTX_set_flags(EVP_CIPHER_CTX *ctx, int flags); void EVP_CIPHER_CTX_clear_flags(EVP_CIPHER_CTX *ctx, int flags); int EVP_CIPHER_CTX_test_flags(const EVP_CIPHER_CTX *ctx,int flags); int EVP_EncryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv); int EVP_EncryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv); int EVP_EncryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_EncryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_EncryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_DecryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv); int EVP_DecryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv); int EVP_DecryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_DecryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_DecryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_CipherInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key,const unsigned char *iv, int enc); int EVP_CipherInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key,const unsigned char *iv, int enc); int EVP_CipherUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_CipherFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_CipherFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_SignFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s, EVP_PKEY *pkey); int EVP_VerifyFinal(EVP_MD_CTX *ctx,const unsigned char *sigbuf, unsigned int siglen,EVP_PKEY *pkey); int EVP_DigestSignInit(EVP_MD_CTX *ctx, EVP_PKEY_CTX **pctx, const EVP_MD *type, ENGINE *e, EVP_PKEY *pkey); int EVP_DigestSignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, size_t *siglen); int EVP_DigestVerifyInit(EVP_MD_CTX *ctx, EVP_PKEY_CTX **pctx, const EVP_MD *type, ENGINE *e, EVP_PKEY *pkey); int EVP_DigestVerifyFinal(EVP_MD_CTX *ctx, unsigned char *sig, size_t siglen); int EVP_OpenInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *type, const unsigned char *ek, int ekl, const unsigned char *iv, EVP_PKEY *priv); int EVP_OpenFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_SealInit(EVP_CIPHER_CTX *ctx, const EVP_CIPHER *type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk); int EVP_SealFinal(EVP_CIPHER_CTX *ctx,unsigned char *out,int *outl); void EVP_EncodeInit(EVP_ENCODE_CTX *ctx); void EVP_EncodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in,int inl); void EVP_EncodeFinal(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl); int EVP_EncodeBlock(unsigned char *t, const unsigned char *f, int n); void EVP_DecodeInit(EVP_ENCODE_CTX *ctx); int EVP_DecodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in, int inl); int EVP_DecodeFinal(EVP_ENCODE_CTX *ctx, unsigned char *out, int *outl); int EVP_DecodeBlock(unsigned char *t, const unsigned char *f, int n); void EVP_CIPHER_CTX_init(EVP_CIPHER_CTX *a); int EVP_CIPHER_CTX_cleanup(EVP_CIPHER_CTX *a); EVP_CIPHER_CTX *EVP_CIPHER_CTX_new(void); void EVP_CIPHER_CTX_free(EVP_CIPHER_CTX *a); int EVP_CIPHER_CTX_set_key_length(EVP_CIPHER_CTX *x, int keylen); int EVP_CIPHER_CTX_set_padding(EVP_CIPHER_CTX *c, int pad); int EVP_CIPHER_CTX_ctrl(EVP_CIPHER_CTX *ctx, int type, int arg, void *ptr); int EVP_CIPHER_CTX_rand_key(EVP_CIPHER_CTX *ctx, unsigned char *key); BIO_METHOD *BIO_f_md(void); BIO_METHOD *BIO_f_base64(void); BIO_METHOD *BIO_f_cipher(void); BIO_METHOD *BIO_f_reliable(void); void BIO_set_cipher(BIO *b,const EVP_CIPHER *c,const unsigned char *k, const unsigned char *i, int enc); const EVP_MD *EVP_md_null(void); const EVP_MD *EVP_md2(void); const EVP_MD *EVP_md4(void); const EVP_MD *EVP_md5(void); const EVP_MD *EVP_sha(void); const EVP_MD *EVP_sha1(void); const EVP_MD *EVP_dss(void); const EVP_MD *EVP_dss1(void); const EVP_MD *EVP_ecdsa(void); const EVP_MD *EVP_sha224(void); const EVP_MD *EVP_sha256(void); const EVP_MD *EVP_sha384(void); const EVP_MD *EVP_sha512(void); const EVP_MD *EVP_ripemd160(void); const EVP_MD *EVP_whirlpool(void); const EVP_CIPHER *EVP_enc_null(void); const EVP_CIPHER *EVP_des_ecb(void); const EVP_CIPHER *EVP_des_ede(void); const EVP_CIPHER *EVP_des_ede3(void); const EVP_CIPHER *EVP_des_ede_ecb(void); const EVP_CIPHER *EVP_des_ede3_ecb(void); const EVP_CIPHER *EVP_des_cfb64(void); const EVP_CIPHER *EVP_des_cfb1(void); const EVP_CIPHER *EVP_des_cfb8(void); const EVP_CIPHER *EVP_des_ede_cfb64(void); const EVP_CIPHER *EVP_des_ede3_cfb64(void); const EVP_CIPHER *EVP_des_ede3_cfb1(void); const EVP_CIPHER *EVP_des_ede3_cfb8(void); const EVP_CIPHER *EVP_des_ofb(void); const EVP_CIPHER *EVP_des_ede_ofb(void); const EVP_CIPHER *EVP_des_ede3_ofb(void); const EVP_CIPHER *EVP_des_cbc(void); const EVP_CIPHER *EVP_des_ede_cbc(void); const EVP_CIPHER *EVP_des_ede3_cbc(void); const EVP_CIPHER *EVP_desx_cbc(void); const EVP_CIPHER *EVP_des_ede3_wrap(void); # 752 "/usr/include/openssl/evp.h" 3 4 const EVP_CIPHER *EVP_rc4(void); const EVP_CIPHER *EVP_rc4_40(void); const EVP_CIPHER *EVP_rc4_hmac_md5(void); const EVP_CIPHER *EVP_idea_ecb(void); const EVP_CIPHER *EVP_idea_cfb64(void); const EVP_CIPHER *EVP_idea_ofb(void); const EVP_CIPHER *EVP_idea_cbc(void); const EVP_CIPHER *EVP_rc2_ecb(void); const EVP_CIPHER *EVP_rc2_cbc(void); const EVP_CIPHER *EVP_rc2_40_cbc(void); const EVP_CIPHER *EVP_rc2_64_cbc(void); const EVP_CIPHER *EVP_rc2_cfb64(void); const EVP_CIPHER *EVP_rc2_ofb(void); const EVP_CIPHER *EVP_bf_ecb(void); const EVP_CIPHER *EVP_bf_cbc(void); const EVP_CIPHER *EVP_bf_cfb64(void); const EVP_CIPHER *EVP_bf_ofb(void); const EVP_CIPHER *EVP_cast5_ecb(void); const EVP_CIPHER *EVP_cast5_cbc(void); const EVP_CIPHER *EVP_cast5_cfb64(void); const EVP_CIPHER *EVP_cast5_ofb(void); const EVP_CIPHER *EVP_aes_128_ecb(void); const EVP_CIPHER *EVP_aes_128_cbc(void); const EVP_CIPHER *EVP_aes_128_cfb1(void); const EVP_CIPHER *EVP_aes_128_cfb8(void); const EVP_CIPHER *EVP_aes_128_cfb128(void); const EVP_CIPHER *EVP_aes_128_ofb(void); const EVP_CIPHER *EVP_aes_128_ctr(void); const EVP_CIPHER *EVP_aes_128_ccm(void); const EVP_CIPHER *EVP_aes_128_gcm(void); const EVP_CIPHER *EVP_aes_128_xts(void); const EVP_CIPHER *EVP_aes_128_wrap(void); const EVP_CIPHER *EVP_aes_128_wrap_pad(void); const EVP_CIPHER *EVP_aes_192_ecb(void); const EVP_CIPHER *EVP_aes_192_cbc(void); const EVP_CIPHER *EVP_aes_192_cfb1(void); const EVP_CIPHER *EVP_aes_192_cfb8(void); const EVP_CIPHER *EVP_aes_192_cfb128(void); const EVP_CIPHER *EVP_aes_192_ofb(void); const EVP_CIPHER *EVP_aes_192_ctr(void); const EVP_CIPHER *EVP_aes_192_ccm(void); const EVP_CIPHER *EVP_aes_192_gcm(void); const EVP_CIPHER *EVP_aes_192_wrap(void); const EVP_CIPHER *EVP_aes_192_wrap_pad(void); const EVP_CIPHER *EVP_aes_256_ecb(void); const EVP_CIPHER *EVP_aes_256_cbc(void); const EVP_CIPHER *EVP_aes_256_cfb1(void); const EVP_CIPHER *EVP_aes_256_cfb8(void); const EVP_CIPHER *EVP_aes_256_cfb128(void); const EVP_CIPHER *EVP_aes_256_ofb(void); const EVP_CIPHER *EVP_aes_256_ctr(void); const EVP_CIPHER *EVP_aes_256_ccm(void); const EVP_CIPHER *EVP_aes_256_gcm(void); const EVP_CIPHER *EVP_aes_256_xts(void); const EVP_CIPHER *EVP_aes_256_wrap(void); const EVP_CIPHER *EVP_aes_256_wrap_pad(void); const EVP_CIPHER *EVP_aes_128_cbc_hmac_sha1(void); const EVP_CIPHER *EVP_aes_256_cbc_hmac_sha1(void); const EVP_CIPHER *EVP_camellia_128_ecb(void); const EVP_CIPHER *EVP_camellia_128_cbc(void); const EVP_CIPHER *EVP_camellia_128_cfb1(void); const EVP_CIPHER *EVP_camellia_128_cfb8(void); const EVP_CIPHER *EVP_camellia_128_cfb128(void); const EVP_CIPHER *EVP_camellia_128_ofb(void); const EVP_CIPHER *EVP_camellia_192_ecb(void); const EVP_CIPHER *EVP_camellia_192_cbc(void); const EVP_CIPHER *EVP_camellia_192_cfb1(void); const EVP_CIPHER *EVP_camellia_192_cfb8(void); const EVP_CIPHER *EVP_camellia_192_cfb128(void); const EVP_CIPHER *EVP_camellia_192_ofb(void); const EVP_CIPHER *EVP_camellia_256_ecb(void); const EVP_CIPHER *EVP_camellia_256_cbc(void); const EVP_CIPHER *EVP_camellia_256_cfb1(void); const EVP_CIPHER *EVP_camellia_256_cfb8(void); const EVP_CIPHER *EVP_camellia_256_cfb128(void); const EVP_CIPHER *EVP_camellia_256_ofb(void); const EVP_CIPHER *EVP_seed_ecb(void); const EVP_CIPHER *EVP_seed_cbc(void); const EVP_CIPHER *EVP_seed_cfb128(void); const EVP_CIPHER *EVP_seed_ofb(void); void OPENSSL_add_all_algorithms_noconf(void); void OPENSSL_add_all_algorithms_conf(void); # 875 "/usr/include/openssl/evp.h" 3 4 void OpenSSL_add_all_ciphers(void); void OpenSSL_add_all_digests(void); int EVP_add_cipher(const EVP_CIPHER *cipher); int EVP_add_digest(const EVP_MD *digest); const EVP_CIPHER *EVP_get_cipherbyname(const char *name); const EVP_MD *EVP_get_digestbyname(const char *name); void EVP_cleanup(void); void EVP_CIPHER_do_all(void (*fn)(const EVP_CIPHER *ciph, const char *from, const char *to, void *x), void *arg); void EVP_CIPHER_do_all_sorted(void (*fn)(const EVP_CIPHER *ciph, const char *from, const char *to, void *x), void *arg); void EVP_MD_do_all(void (*fn)(const EVP_MD *ciph, const char *from, const char *to, void *x), void *arg); void EVP_MD_do_all_sorted(void (*fn)(const EVP_MD *ciph, const char *from, const char *to, void *x), void *arg); int EVP_PKEY_decrypt_old(unsigned char *dec_key, const unsigned char *enc_key,int enc_key_len, EVP_PKEY *private_key); int EVP_PKEY_encrypt_old(unsigned char *enc_key, const unsigned char *key,int key_len, EVP_PKEY *pub_key); int EVP_PKEY_type(int type); int EVP_PKEY_id(const EVP_PKEY *pkey); int EVP_PKEY_base_id(const EVP_PKEY *pkey); int EVP_PKEY_bits(EVP_PKEY *pkey); int EVP_PKEY_size(EVP_PKEY *pkey); int EVP_PKEY_set_type(EVP_PKEY *pkey,int type); int EVP_PKEY_set_type_str(EVP_PKEY *pkey, const char *str, int len); int EVP_PKEY_assign(EVP_PKEY *pkey,int type,void *key); void * EVP_PKEY_get0(EVP_PKEY *pkey); struct rsa_st; int EVP_PKEY_set1_RSA(EVP_PKEY *pkey,struct rsa_st *key); struct rsa_st *EVP_PKEY_get1_RSA(EVP_PKEY *pkey); struct dsa_st; int EVP_PKEY_set1_DSA(EVP_PKEY *pkey,struct dsa_st *key); struct dsa_st *EVP_PKEY_get1_DSA(EVP_PKEY *pkey); struct dh_st; int EVP_PKEY_set1_DH(EVP_PKEY *pkey,struct dh_st *key); struct dh_st *EVP_PKEY_get1_DH(EVP_PKEY *pkey); struct ec_key_st; int EVP_PKEY_set1_EC_KEY(EVP_PKEY *pkey,struct ec_key_st *key); struct ec_key_st *EVP_PKEY_get1_EC_KEY(EVP_PKEY *pkey); EVP_PKEY * EVP_PKEY_new(void); void EVP_PKEY_free(EVP_PKEY *pkey); EVP_PKEY * d2i_PublicKey(int type,EVP_PKEY **a, const unsigned char **pp, long length); int i2d_PublicKey(EVP_PKEY *a, unsigned char **pp); EVP_PKEY * d2i_PrivateKey(int type,EVP_PKEY **a, const unsigned char **pp, long length); EVP_PKEY * d2i_AutoPrivateKey(EVP_PKEY **a, const unsigned char **pp, long length); int i2d_PrivateKey(EVP_PKEY *a, unsigned char **pp); int EVP_PKEY_copy_parameters(EVP_PKEY *to, const EVP_PKEY *from); int EVP_PKEY_missing_parameters(const EVP_PKEY *pkey); int EVP_PKEY_save_parameters(EVP_PKEY *pkey,int mode); int EVP_PKEY_cmp_parameters(const EVP_PKEY *a, const EVP_PKEY *b); int EVP_PKEY_cmp(const EVP_PKEY *a, const EVP_PKEY *b); int EVP_PKEY_print_public(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_print_private(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_print_params(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_get_default_digest_nid(EVP_PKEY *pkey, int *pnid); int EVP_CIPHER_type(const EVP_CIPHER *ctx); int EVP_CIPHER_param_to_asn1(EVP_CIPHER_CTX *c, ASN1_TYPE *type); int EVP_CIPHER_asn1_to_param(EVP_CIPHER_CTX *c, ASN1_TYPE *type); int EVP_CIPHER_set_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type); int EVP_CIPHER_get_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type); int PKCS5_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); int PKCS5_PBKDF2_HMAC_SHA1(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, int keylen, unsigned char *out); int PKCS5_PBKDF2_HMAC(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, const EVP_MD *digest, int keylen, unsigned char *out); int PKCS5_v2_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); void PKCS5_PBE_add(void); int EVP_PBE_CipherInit (ASN1_OBJECT *pbe_obj, const char *pass, int passlen, ASN1_TYPE *param, EVP_CIPHER_CTX *ctx, int en_de); # 1001 "/usr/include/openssl/evp.h" 3 4 int EVP_PBE_alg_add_type(int pbe_type, int pbe_nid, int cipher_nid, int md_nid, EVP_PBE_KEYGEN *keygen); int EVP_PBE_alg_add(int nid, const EVP_CIPHER *cipher, const EVP_MD *md, EVP_PBE_KEYGEN *keygen); int EVP_PBE_find(int type, int pbe_nid, int *pcnid, int *pmnid, EVP_PBE_KEYGEN **pkeygen); void EVP_PBE_cleanup(void); # 1019 "/usr/include/openssl/evp.h" 3 4 int EVP_PKEY_asn1_get_count(void); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_get0(int idx); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_find(ENGINE **pe, int type); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_find_str(ENGINE **pe, const char *str, int len); int EVP_PKEY_asn1_add0(const EVP_PKEY_ASN1_METHOD *ameth); int EVP_PKEY_asn1_add_alias(int to, int from); int EVP_PKEY_asn1_get0_info(int *ppkey_id, int *pkey_base_id, int *ppkey_flags, const char **pinfo, const char **ppem_str, const EVP_PKEY_ASN1_METHOD *ameth); const EVP_PKEY_ASN1_METHOD* EVP_PKEY_get0_asn1(EVP_PKEY *pkey); EVP_PKEY_ASN1_METHOD* EVP_PKEY_asn1_new(int id, int flags, const char *pem_str, const char *info); void EVP_PKEY_asn1_copy(EVP_PKEY_ASN1_METHOD *dst, const EVP_PKEY_ASN1_METHOD *src); void EVP_PKEY_asn1_free(EVP_PKEY_ASN1_METHOD *ameth); void EVP_PKEY_asn1_set_public(EVP_PKEY_ASN1_METHOD *ameth, int (*pub_decode)(EVP_PKEY *pk, X509_PUBKEY *pub), int (*pub_encode)(X509_PUBKEY *pub, const EVP_PKEY *pk), int (*pub_cmp)(const EVP_PKEY *a, const EVP_PKEY *b), int (*pub_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx), int (*pkey_size)(const EVP_PKEY *pk), int (*pkey_bits)(const EVP_PKEY *pk)); void EVP_PKEY_asn1_set_private(EVP_PKEY_ASN1_METHOD *ameth, int (*priv_decode)(EVP_PKEY *pk, PKCS8_PRIV_KEY_INFO *p8inf), int (*priv_encode)(PKCS8_PRIV_KEY_INFO *p8, const EVP_PKEY *pk), int (*priv_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx)); void EVP_PKEY_asn1_set_param(EVP_PKEY_ASN1_METHOD *ameth, int (*param_decode)(EVP_PKEY *pkey, const unsigned char **pder, int derlen), int (*param_encode)(const EVP_PKEY *pkey, unsigned char **pder), int (*param_missing)(const EVP_PKEY *pk), int (*param_copy)(EVP_PKEY *to, const EVP_PKEY *from), int (*param_cmp)(const EVP_PKEY *a, const EVP_PKEY *b), int (*param_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx)); void EVP_PKEY_asn1_set_free(EVP_PKEY_ASN1_METHOD *ameth, void (*pkey_free)(EVP_PKEY *pkey)); void EVP_PKEY_asn1_set_ctrl(EVP_PKEY_ASN1_METHOD *ameth, int (*pkey_ctrl)(EVP_PKEY *pkey, int op, long arg1, void *arg2)); # 1125 "/usr/include/openssl/evp.h" 3 4 const EVP_PKEY_METHOD *EVP_PKEY_meth_find(int type); EVP_PKEY_METHOD* EVP_PKEY_meth_new(int id, int flags); void EVP_PKEY_meth_get0_info(int *ppkey_id, int *pflags, const EVP_PKEY_METHOD *meth); void EVP_PKEY_meth_copy(EVP_PKEY_METHOD *dst, const EVP_PKEY_METHOD *src); void EVP_PKEY_meth_free(EVP_PKEY_METHOD *pmeth); int EVP_PKEY_meth_add0(const EVP_PKEY_METHOD *pmeth); EVP_PKEY_CTX *EVP_PKEY_CTX_new(EVP_PKEY *pkey, ENGINE *e); EVP_PKEY_CTX *EVP_PKEY_CTX_new_id(int id, ENGINE *e); EVP_PKEY_CTX *EVP_PKEY_CTX_dup(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_free(EVP_PKEY_CTX *ctx); int EVP_PKEY_CTX_ctrl(EVP_PKEY_CTX *ctx, int keytype, int optype, int cmd, int p1, void *p2); int EVP_PKEY_CTX_ctrl_str(EVP_PKEY_CTX *ctx, const char *type, const char *value); int EVP_PKEY_CTX_get_operation(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_set0_keygen_info(EVP_PKEY_CTX *ctx, int *dat, int datlen); EVP_PKEY *EVP_PKEY_new_mac_key(int type, ENGINE *e, const unsigned char *key, int keylen); void EVP_PKEY_CTX_set_data(EVP_PKEY_CTX *ctx, void *data); void *EVP_PKEY_CTX_get_data(EVP_PKEY_CTX *ctx); EVP_PKEY *EVP_PKEY_CTX_get0_pkey(EVP_PKEY_CTX *ctx); EVP_PKEY *EVP_PKEY_CTX_get0_peerkey(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_set_app_data(EVP_PKEY_CTX *ctx, void *data); void *EVP_PKEY_CTX_get_app_data(EVP_PKEY_CTX *ctx); int EVP_PKEY_sign_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_sign(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen); int EVP_PKEY_verify_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_verify(EVP_PKEY_CTX *ctx, const unsigned char *sig, size_t siglen, const unsigned char *tbs, size_t tbslen); int EVP_PKEY_verify_recover_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_verify_recover(EVP_PKEY_CTX *ctx, unsigned char *rout, size_t *routlen, const unsigned char *sig, size_t siglen); int EVP_PKEY_encrypt_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_encrypt(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen); int EVP_PKEY_decrypt_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_decrypt(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen); int EVP_PKEY_derive_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_derive_set_peer(EVP_PKEY_CTX *ctx, EVP_PKEY *peer); int EVP_PKEY_derive(EVP_PKEY_CTX *ctx, unsigned char *key, size_t *keylen); typedef int EVP_PKEY_gen_cb(EVP_PKEY_CTX *ctx); int EVP_PKEY_paramgen_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_paramgen(EVP_PKEY_CTX *ctx, EVP_PKEY **ppkey); int EVP_PKEY_keygen_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_keygen(EVP_PKEY_CTX *ctx, EVP_PKEY **ppkey); void EVP_PKEY_CTX_set_cb(EVP_PKEY_CTX *ctx, EVP_PKEY_gen_cb *cb); EVP_PKEY_gen_cb *EVP_PKEY_CTX_get_cb(EVP_PKEY_CTX *ctx); int EVP_PKEY_CTX_get_keygen_info(EVP_PKEY_CTX *ctx, int idx); void EVP_PKEY_meth_set_init(EVP_PKEY_METHOD *pmeth, int (*init)(EVP_PKEY_CTX *ctx)); void EVP_PKEY_meth_set_copy(EVP_PKEY_METHOD *pmeth, int (*copy)(EVP_PKEY_CTX *dst, EVP_PKEY_CTX *src)); void EVP_PKEY_meth_set_cleanup(EVP_PKEY_METHOD *pmeth, void (*cleanup)(EVP_PKEY_CTX *ctx)); void EVP_PKEY_meth_set_paramgen(EVP_PKEY_METHOD *pmeth, int (*paramgen_init)(EVP_PKEY_CTX *ctx), int (*paramgen)(EVP_PKEY_CTX *ctx, EVP_PKEY *pkey)); void EVP_PKEY_meth_set_keygen(EVP_PKEY_METHOD *pmeth, int (*keygen_init)(EVP_PKEY_CTX *ctx), int (*keygen)(EVP_PKEY_CTX *ctx, EVP_PKEY *pkey)); void EVP_PKEY_meth_set_sign(EVP_PKEY_METHOD *pmeth, int (*sign_init)(EVP_PKEY_CTX *ctx), int (*sign)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_verify(EVP_PKEY_METHOD *pmeth, int (*verify_init)(EVP_PKEY_CTX *ctx), int (*verify)(EVP_PKEY_CTX *ctx, const unsigned char *sig, size_t siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_verify_recover(EVP_PKEY_METHOD *pmeth, int (*verify_recover_init)(EVP_PKEY_CTX *ctx), int (*verify_recover)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_signctx(EVP_PKEY_METHOD *pmeth, int (*signctx_init)(EVP_PKEY_CTX *ctx, EVP_MD_CTX *mctx), int (*signctx)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, EVP_MD_CTX *mctx)); void EVP_PKEY_meth_set_verifyctx(EVP_PKEY_METHOD *pmeth, int (*verifyctx_init)(EVP_PKEY_CTX *ctx, EVP_MD_CTX *mctx), int (*verifyctx)(EVP_PKEY_CTX *ctx, const unsigned char *sig,int siglen, EVP_MD_CTX *mctx)); void EVP_PKEY_meth_set_encrypt(EVP_PKEY_METHOD *pmeth, int (*encrypt_init)(EVP_PKEY_CTX *ctx), int (*encryptfn)(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen)); void EVP_PKEY_meth_set_decrypt(EVP_PKEY_METHOD *pmeth, int (*decrypt_init)(EVP_PKEY_CTX *ctx), int (*decrypt)(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen)); void EVP_PKEY_meth_set_derive(EVP_PKEY_METHOD *pmeth, int (*derive_init)(EVP_PKEY_CTX *ctx), int (*derive)(EVP_PKEY_CTX *ctx, unsigned char *key, size_t *keylen)); void EVP_PKEY_meth_set_ctrl(EVP_PKEY_METHOD *pmeth, int (*ctrl)(EVP_PKEY_CTX *ctx, int type, int p1, void *p2), int (*ctrl_str)(EVP_PKEY_CTX *ctx, const char *type, const char *value)); void EVP_add_alg_module(void); void ERR_load_EVP_strings(void); # 1420 "/usr/include/openssl/evp.h" 3 4 } # 74 "/usr/include/openssl/x509.h" 2 3 4 # 83 "/usr/include/openssl/x509.h" 3 4 # 1 "/usr/include/openssl/ec.h" 1 3 4 # 79 "/usr/include/openssl/ec.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 80 "/usr/include/openssl/ec.h" 2 3 4 # 92 "/usr/include/openssl/ec.h" 3 4 extern "C" { # 106 "/usr/include/openssl/ec.h" 3 4 typedef enum { POINT_CONVERSION_COMPRESSED = 2, POINT_CONVERSION_UNCOMPRESSED = 4, POINT_CONVERSION_HYBRID = 6 } point_conversion_form_t; typedef struct ec_method_st EC_METHOD; typedef struct ec_group_st # 129 "/usr/include/openssl/ec.h" 3 4 EC_GROUP; typedef struct ec_point_st EC_POINT; # 142 "/usr/include/openssl/ec.h" 3 4 const EC_METHOD *EC_GFp_simple_method(void); const EC_METHOD *EC_GFp_mont_method(void); const EC_METHOD *EC_GFp_nist_method(void); # 181 "/usr/include/openssl/ec.h" 3 4 EC_GROUP *EC_GROUP_new(const EC_METHOD *meth); void EC_GROUP_free(EC_GROUP *group); void EC_GROUP_clear_free(EC_GROUP *group); int EC_GROUP_copy(EC_GROUP *dst, const EC_GROUP *src); EC_GROUP *EC_GROUP_dup(const EC_GROUP *src); const EC_METHOD *EC_GROUP_method_of(const EC_GROUP *group); int EC_METHOD_get_field_type(const EC_METHOD *meth); # 227 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_set_generator(EC_GROUP *group, const EC_POINT *generator, const BIGNUM *order, const BIGNUM *cofactor); const EC_POINT *EC_GROUP_get0_generator(const EC_GROUP *group); int EC_GROUP_get_order(const EC_GROUP *group, BIGNUM *order, BN_CTX *ctx); int EC_GROUP_get_cofactor(const EC_GROUP *group, BIGNUM *cofactor, BN_CTX *ctx); void EC_GROUP_set_curve_name(EC_GROUP *group, int nid); int EC_GROUP_get_curve_name(const EC_GROUP *group); void EC_GROUP_set_asn1_flag(EC_GROUP *group, int flag); int EC_GROUP_get_asn1_flag(const EC_GROUP *group); void EC_GROUP_set_point_conversion_form(EC_GROUP *group, point_conversion_form_t form); point_conversion_form_t EC_GROUP_get_point_conversion_form(const EC_GROUP *); unsigned char *EC_GROUP_get0_seed(const EC_GROUP *x); size_t EC_GROUP_get_seed_len(const EC_GROUP *); size_t EC_GROUP_set_seed(EC_GROUP *, const unsigned char *, size_t len); # 281 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_set_curve_GFp(EC_GROUP *group, const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); # 291 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_get_curve_GFp(const EC_GROUP *group, BIGNUM *p, BIGNUM *a, BIGNUM *b, BN_CTX *ctx); int EC_GROUP_get_degree(const EC_GROUP *group); int EC_GROUP_check(const EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_check_discriminant(const EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_cmp(const EC_GROUP *a, const EC_GROUP *b, BN_CTX *ctx); # 332 "/usr/include/openssl/ec.h" 3 4 EC_GROUP *EC_GROUP_new_curve_GFp(const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); EC_GROUP *EC_GROUP_new_by_curve_name(int nid); typedef struct { int nid; const char *comment; } EC_builtin_curve; size_t EC_get_builtin_curves(EC_builtin_curve *r, size_t nitems); # 365 "/usr/include/openssl/ec.h" 3 4 EC_POINT *EC_POINT_new(const EC_GROUP *group); void EC_POINT_free(EC_POINT *point); void EC_POINT_clear_free(EC_POINT *point); int EC_POINT_copy(EC_POINT *dst, const EC_POINT *src); EC_POINT *EC_POINT_dup(const EC_POINT *src, const EC_GROUP *group); const EC_METHOD *EC_POINT_method_of(const EC_POINT *point); int EC_POINT_set_to_infinity(const EC_GROUP *group, EC_POINT *point); # 414 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_set_Jprojective_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, const BIGNUM *y, const BIGNUM *z, BN_CTX *ctx); # 426 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_get_Jprojective_coordinates_GFp(const EC_GROUP *group, const EC_POINT *p, BIGNUM *x, BIGNUM *y, BIGNUM *z, BN_CTX *ctx); # 437 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_set_affine_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, const BIGNUM *y, BN_CTX *ctx); # 448 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_get_affine_coordinates_GFp(const EC_GROUP *group, const EC_POINT *p, BIGNUM *x, BIGNUM *y, BN_CTX *ctx); # 459 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_set_compressed_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, int y_bit, BN_CTX *ctx); # 471 "/usr/include/openssl/ec.h" 3 4 size_t EC_POINT_point2oct(const EC_GROUP *group, const EC_POINT *p, point_conversion_form_t form, unsigned char *buf, size_t len, BN_CTX *ctx); # 483 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_oct2point(const EC_GROUP *group, EC_POINT *p, const unsigned char *buf, size_t len, BN_CTX *ctx); BIGNUM *EC_POINT_point2bn(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, BIGNUM *, BN_CTX *); EC_POINT *EC_POINT_bn2point(const EC_GROUP *, const BIGNUM *, EC_POINT *, BN_CTX *); char *EC_POINT_point2hex(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, BN_CTX *); EC_POINT *EC_POINT_hex2point(const EC_GROUP *, const char *, EC_POINT *, BN_CTX *); # 509 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_add(const EC_GROUP *group, EC_POINT *r, const EC_POINT *a, const EC_POINT *b, BN_CTX *ctx); # 518 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_dbl(const EC_GROUP *group, EC_POINT *r, const EC_POINT *a, BN_CTX *ctx); int EC_POINT_invert(const EC_GROUP *group, EC_POINT *a, BN_CTX *ctx); int EC_POINT_is_at_infinity(const EC_GROUP *group, const EC_POINT *p); int EC_POINT_is_on_curve(const EC_GROUP *group, const EC_POINT *point, BN_CTX *ctx); # 550 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_cmp(const EC_GROUP *group, const EC_POINT *a, const EC_POINT *b, BN_CTX *ctx); int EC_POINT_make_affine(const EC_GROUP *group, EC_POINT *point, BN_CTX *ctx); int EC_POINTs_make_affine(const EC_GROUP *group, size_t num, EC_POINT *points[], BN_CTX *ctx); # 565 "/usr/include/openssl/ec.h" 3 4 int EC_POINTs_mul(const EC_GROUP *group, EC_POINT *r, const BIGNUM *n, size_t num, const EC_POINT *p[], const BIGNUM *m[], BN_CTX *ctx); # 576 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_mul(const EC_GROUP *group, EC_POINT *r, const BIGNUM *n, const EC_POINT *q, const BIGNUM *m, BN_CTX *ctx); int EC_GROUP_precompute_mult(EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_have_precompute_mult(const EC_GROUP *group); # 598 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_get_basis_type(const EC_GROUP *); typedef struct ecpk_parameters_st ECPKPARAMETERS; EC_GROUP *d2i_ECPKParameters(EC_GROUP **, const unsigned char **in, long len); int i2d_ECPKParameters(const EC_GROUP *, unsigned char **out); # 615 "/usr/include/openssl/ec.h" 3 4 int ECPKParameters_print(BIO *bp, const EC_GROUP *x, int off); int ECPKParameters_print_fp(FILE *fp, const EC_GROUP *x, int off); typedef struct ec_key_st EC_KEY; # 639 "/usr/include/openssl/ec.h" 3 4 EC_KEY *EC_KEY_new(void); int EC_KEY_get_flags(const EC_KEY *key); void EC_KEY_set_flags(EC_KEY *key, int flags); void EC_KEY_clear_flags(EC_KEY *key, int flags); EC_KEY *EC_KEY_new_by_curve_name(int nid); void EC_KEY_free(EC_KEY *key); EC_KEY *EC_KEY_copy(EC_KEY *dst, const EC_KEY *src); EC_KEY *EC_KEY_dup(const EC_KEY *src); int EC_KEY_up_ref(EC_KEY *key); const EC_GROUP *EC_KEY_get0_group(const EC_KEY *key); int EC_KEY_set_group(EC_KEY *key, const EC_GROUP *group); const BIGNUM *EC_KEY_get0_private_key(const EC_KEY *key); int EC_KEY_set_private_key(EC_KEY *key, const BIGNUM *prv); const EC_POINT *EC_KEY_get0_public_key(const EC_KEY *key); int EC_KEY_set_public_key(EC_KEY *key, const EC_POINT *pub); unsigned EC_KEY_get_enc_flags(const EC_KEY *key); void EC_KEY_set_enc_flags(EC_KEY *eckey, unsigned int flags); point_conversion_form_t EC_KEY_get_conv_form(const EC_KEY *key); void EC_KEY_set_conv_form(EC_KEY *eckey, point_conversion_form_t cform); void *EC_KEY_get_key_method_data(EC_KEY *key, void *(*dup_func)(void *), void (*free_func)(void *), void (*clear_free_func)(void *)); # 735 "/usr/include/openssl/ec.h" 3 4 void *EC_KEY_insert_key_method_data(EC_KEY *key, void *data, void *(*dup_func)(void *), void (*free_func)(void *), void (*clear_free_func)(void *)); void EC_KEY_set_asn1_flag(EC_KEY *eckey, int asn1_flag); int EC_KEY_precompute_mult(EC_KEY *key, BN_CTX *ctx); int EC_KEY_generate_key(EC_KEY *key); int EC_KEY_check_key(const EC_KEY *key); # 767 "/usr/include/openssl/ec.h" 3 4 int EC_KEY_set_public_key_affine_coordinates(EC_KEY *key, BIGNUM *x, BIGNUM *y); # 780 "/usr/include/openssl/ec.h" 3 4 EC_KEY *d2i_ECPrivateKey(EC_KEY **key, const unsigned char **in, long len); int i2d_ECPrivateKey(EC_KEY *key, unsigned char **out); # 802 "/usr/include/openssl/ec.h" 3 4 EC_KEY *d2i_ECParameters(EC_KEY **key, const unsigned char **in, long len); int i2d_ECParameters(EC_KEY *key, unsigned char **out); # 825 "/usr/include/openssl/ec.h" 3 4 EC_KEY *o2i_ECPublicKey(EC_KEY **key, const unsigned char **in, long len); int i2o_ECPublicKey(EC_KEY *key, unsigned char **out); int ECParameters_print(BIO *bp, const EC_KEY *key); int EC_KEY_print(BIO *bp, const EC_KEY *key, int off); # 858 "/usr/include/openssl/ec.h" 3 4 int ECParameters_print_fp(FILE *fp, const EC_KEY *key); int EC_KEY_print_fp(FILE *fp, const EC_KEY *key, int off); # 891 "/usr/include/openssl/ec.h" 3 4 void ERR_load_EC_strings(void); # 1083 "/usr/include/openssl/ec.h" 3 4 } # 84 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/ecdsa.h" 1 3 4 # 62 "/usr/include/openssl/ecdsa.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 63 "/usr/include/openssl/ecdsa.h" 2 3 4 # 75 "/usr/include/openssl/ecdsa.h" 3 4 extern "C" { typedef struct ECDSA_SIG_st { BIGNUM *r; BIGNUM *s; } ECDSA_SIG; ECDSA_SIG *ECDSA_SIG_new(void); void ECDSA_SIG_free(ECDSA_SIG *sig); int i2d_ECDSA_SIG(const ECDSA_SIG *sig, unsigned char **pp); # 109 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *d2i_ECDSA_SIG(ECDSA_SIG **sig, const unsigned char **pp, long len); # 118 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *ECDSA_do_sign(const unsigned char *dgst,int dgst_len,EC_KEY *eckey); # 130 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *ECDSA_do_sign_ex(const unsigned char *dgst, int dgstlen, const BIGNUM *kinv, const BIGNUM *rp, EC_KEY *eckey); # 142 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_do_verify(const unsigned char *dgst, int dgst_len, const ECDSA_SIG *sig, EC_KEY* eckey); const ECDSA_METHOD *ECDSA_OpenSSL(void); void ECDSA_set_default_method(const ECDSA_METHOD *meth); const ECDSA_METHOD *ECDSA_get_default_method(void); int ECDSA_set_method(EC_KEY *eckey, const ECDSA_METHOD *meth); int ECDSA_size(const EC_KEY *eckey); # 177 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign_setup(EC_KEY *eckey, BN_CTX *ctx, BIGNUM **kinv, BIGNUM **rp); # 190 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign(int type, const unsigned char *dgst, int dgstlen, unsigned char *sig, unsigned int *siglen, EC_KEY *eckey); # 207 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign_ex(int type, const unsigned char *dgst, int dgstlen, unsigned char *sig, unsigned int *siglen, const BIGNUM *kinv, const BIGNUM *rp, EC_KEY *eckey); # 222 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_verify(int type, const unsigned char *dgst, int dgstlen, const unsigned char *sig, int siglen, EC_KEY *eckey); int ECDSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int ECDSA_set_ex_data(EC_KEY *d, int idx, void *arg); void *ECDSA_get_ex_data(EC_KEY *d, int idx); void ERR_load_ECDSA_strings(void); # 258 "/usr/include/openssl/ecdsa.h" 3 4 } # 88 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/ecdh.h" 1 3 4 # 72 "/usr/include/openssl/ecdh.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 73 "/usr/include/openssl/ecdh.h" 2 3 4 # 85 "/usr/include/openssl/ecdh.h" 3 4 extern "C" { const ECDH_METHOD *ECDH_OpenSSL(void); void ECDH_set_default_method(const ECDH_METHOD *); const ECDH_METHOD *ECDH_get_default_method(void); int ECDH_set_method(EC_KEY *, const ECDH_METHOD *); int ECDH_compute_key(void *out, size_t outlen, const EC_POINT *pub_key, EC_KEY *ecdh, void *(*KDF)(const void *in, size_t inlen, void *out, size_t *outlen)); int ECDH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int ECDH_set_ex_data(EC_KEY *d, int idx, void *arg); void *ECDH_get_ex_data(EC_KEY *d, int idx); void ERR_load_ECDH_strings(void); # 125 "/usr/include/openssl/ecdh.h" 3 4 } # 92 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/rsa.h" 1 3 4 # 78 "/usr/include/openssl/rsa.h" 3 4 extern "C" { struct rsa_meth_st { const char *name; int (*rsa_pub_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_pub_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_priv_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_priv_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_mod_exp)(BIGNUM *r0,const BIGNUM *I,RSA *rsa,BN_CTX *ctx); int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(RSA *rsa); int (*finish)(RSA *rsa); int flags; char *app_data; int (*rsa_sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, const RSA *rsa); int (*rsa_verify)(int dtype, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, const RSA *rsa); int (*rsa_keygen)(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb); }; struct rsa_st { int pad; long version; const RSA_METHOD *meth; ENGINE *engine; BIGNUM *n; BIGNUM *e; BIGNUM *d; BIGNUM *p; BIGNUM *q; BIGNUM *dmp1; BIGNUM *dmq1; BIGNUM *iqmp; CRYPTO_EX_DATA ex_data; int references; int flags; BN_MONT_CTX *_method_mod_n; BN_MONT_CTX *_method_mod_p; BN_MONT_CTX *_method_mod_q; char *bignum_data; BN_BLINDING *blinding; BN_BLINDING *mt_blinding; }; # 283 "/usr/include/openssl/rsa.h" 3 4 RSA * RSA_new(void); RSA * RSA_new_method(ENGINE *engine); int RSA_size(const RSA *rsa); RSA * RSA_generate_key(int bits, unsigned long e,void (*callback)(int,int,void *),void *cb_arg); int RSA_generate_key_ex(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb); int RSA_X931_derive_ex(RSA *rsa, BIGNUM *p1, BIGNUM *p2, BIGNUM *q1, BIGNUM *q2, const BIGNUM *Xp1, const BIGNUM *Xp2, const BIGNUM *Xp, const BIGNUM *Xq1, const BIGNUM *Xq2, const BIGNUM *Xq, const BIGNUM *e, BN_GENCB *cb); int RSA_X931_generate_key_ex(RSA *rsa, int bits, const BIGNUM *e, BN_GENCB *cb); int RSA_check_key(const RSA *); int RSA_public_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_private_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_public_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_private_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); void RSA_free (RSA *r); int RSA_up_ref(RSA *r); int RSA_flags(const RSA *r); void RSA_set_default_method(const RSA_METHOD *meth); const RSA_METHOD *RSA_get_default_method(void); const RSA_METHOD *RSA_get_method(const RSA *rsa); int RSA_set_method(RSA *rsa, const RSA_METHOD *meth); int RSA_memory_lock(RSA *r); const RSA_METHOD *RSA_PKCS1_SSLeay(void); const RSA_METHOD *RSA_null_method(void); RSA *d2i_RSAPublicKey(RSA **a, const unsigned char **in, long len); int i2d_RSAPublicKey(const RSA *a, unsigned char **out); extern const ASN1_ITEM RSAPublicKey_it; RSA *d2i_RSAPrivateKey(RSA **a, const unsigned char **in, long len); int i2d_RSAPrivateKey(const RSA *a, unsigned char **out); extern const ASN1_ITEM RSAPrivateKey_it; typedef struct rsa_pss_params_st { X509_ALGOR *hashAlgorithm; X509_ALGOR *maskGenAlgorithm; ASN1_INTEGER *saltLength; ASN1_INTEGER *trailerField; } RSA_PSS_PARAMS; RSA_PSS_PARAMS *RSA_PSS_PARAMS_new(void); void RSA_PSS_PARAMS_free(RSA_PSS_PARAMS *a); RSA_PSS_PARAMS *d2i_RSA_PSS_PARAMS(RSA_PSS_PARAMS **a, const unsigned char **in, long len); int i2d_RSA_PSS_PARAMS(RSA_PSS_PARAMS *a, unsigned char **out); extern const ASN1_ITEM RSA_PSS_PARAMS_it; int RSA_print_fp(FILE *fp, const RSA *r,int offset); int RSA_print(BIO *bp, const RSA *r,int offset); int i2d_RSA_NET(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey); RSA *d2i_RSA_NET(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey); int i2d_Netscape_RSA(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify)); RSA *d2i_Netscape_RSA(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify)); int RSA_sign(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa); int RSA_verify(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, RSA *rsa); int RSA_sign_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa); int RSA_verify_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigbuf, unsigned int siglen, RSA *rsa); int RSA_blinding_on(RSA *rsa, BN_CTX *ctx); void RSA_blinding_off(RSA *rsa); BN_BLINDING *RSA_setup_blinding(RSA *rsa, BN_CTX *ctx); int RSA_padding_add_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int PKCS1_MGF1(unsigned char *mask, long len, const unsigned char *seed, long seedlen, const EVP_MD *dgst); int RSA_padding_add_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl, const unsigned char *p,int pl); int RSA_padding_check_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len, const unsigned char *p,int pl); int RSA_padding_add_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_none(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_none(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_X931(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_X931(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_X931_hash_id(int nid); int RSA_verify_PKCS1_PSS(RSA *rsa, const unsigned char *mHash, const EVP_MD *Hash, const unsigned char *EM, int sLen); int RSA_padding_add_PKCS1_PSS(RSA *rsa, unsigned char *EM, const unsigned char *mHash, const EVP_MD *Hash, int sLen); int RSA_verify_PKCS1_PSS_mgf1(RSA *rsa, const unsigned char *mHash, const EVP_MD *Hash, const EVP_MD *mgf1Hash, const unsigned char *EM, int sLen); int RSA_padding_add_PKCS1_PSS_mgf1(RSA *rsa, unsigned char *EM, const unsigned char *mHash, const EVP_MD *Hash, const EVP_MD *mgf1Hash, int sLen); int RSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int RSA_set_ex_data(RSA *r,int idx,void *arg); void *RSA_get_ex_data(const RSA *r, int idx); RSA *RSAPublicKey_dup(RSA *rsa); RSA *RSAPrivateKey_dup(RSA *rsa); # 462 "/usr/include/openssl/rsa.h" 3 4 void ERR_load_RSA_strings(void); # 591 "/usr/include/openssl/rsa.h" 3 4 } # 97 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/dsa.h" 1 3 4 # 68 "/usr/include/openssl/dsa.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 69 "/usr/include/openssl/dsa.h" 2 3 4 # 83 "/usr/include/openssl/dsa.h" 3 4 # 1 "/usr/include/openssl/dh.h" 1 3 4 # 62 "/usr/include/openssl/dh.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/dh.h" 2 3 4 # 108 "/usr/include/openssl/dh.h" 3 4 extern "C" { struct dh_method { const char *name; int (*generate_key)(DH *dh); int (*compute_key)(unsigned char *key,const BIGNUM *pub_key,DH *dh); int (*bn_mod_exp)(const DH *dh, BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(DH *dh); int (*finish)(DH *dh); int flags; char *app_data; int (*generate_params)(DH *dh, int prime_len, int generator, BN_GENCB *cb); }; struct dh_st { int pad; int version; BIGNUM *p; BIGNUM *g; long length; BIGNUM *pub_key; BIGNUM *priv_key; int flags; BN_MONT_CTX *method_mont_p; BIGNUM *q; BIGNUM *j; unsigned char *seed; int seedlen; BIGNUM *counter; int references; CRYPTO_EX_DATA ex_data; const DH_METHOD *meth; ENGINE *engine; }; # 185 "/usr/include/openssl/dh.h" 3 4 DH *DHparams_dup(DH *); const DH_METHOD *DH_OpenSSL(void); void DH_set_default_method(const DH_METHOD *meth); const DH_METHOD *DH_get_default_method(void); int DH_set_method(DH *dh, const DH_METHOD *meth); DH *DH_new_method(ENGINE *engine); DH * DH_new(void); void DH_free(DH *dh); int DH_up_ref(DH *dh); int DH_size(const DH *dh); int DH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int DH_set_ex_data(DH *d, int idx, void *arg); void *DH_get_ex_data(DH *d, int idx); DH * DH_generate_parameters(int prime_len,int generator, void (*callback)(int,int,void *),void *cb_arg); int DH_generate_parameters_ex(DH *dh, int prime_len,int generator, BN_GENCB *cb); int DH_check(const DH *dh,int *codes); int DH_check_pub_key(const DH *dh,const BIGNUM *pub_key, int *codes); int DH_generate_key(DH *dh); int DH_compute_key(unsigned char *key,const BIGNUM *pub_key,DH *dh); int DH_compute_key_padded(unsigned char *key,const BIGNUM *pub_key,DH *dh); DH * d2i_DHparams(DH **a,const unsigned char **pp, long length); int i2d_DHparams(const DH *a,unsigned char **pp); int DHparams_print_fp(FILE *fp, const DH *x); int DHparams_print(BIO *bp, const DH *x); # 244 "/usr/include/openssl/dh.h" 3 4 void ERR_load_DH_strings(void); # 282 "/usr/include/openssl/dh.h" 3 4 } # 84 "/usr/include/openssl/dsa.h" 2 3 4 # 119 "/usr/include/openssl/dsa.h" 3 4 extern "C" { typedef struct DSA_SIG_st { BIGNUM *r; BIGNUM *s; } DSA_SIG; struct dsa_method { const char *name; DSA_SIG * (*dsa_do_sign)(const unsigned char *dgst, int dlen, DSA *dsa); int (*dsa_sign_setup)(DSA *dsa, BN_CTX *ctx_in, BIGNUM **kinvp, BIGNUM **rp); int (*dsa_do_verify)(const unsigned char *dgst, int dgst_len, DSA_SIG *sig, DSA *dsa); int (*dsa_mod_exp)(DSA *dsa, BIGNUM *rr, BIGNUM *a1, BIGNUM *p1, BIGNUM *a2, BIGNUM *p2, BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont); int (*bn_mod_exp)(DSA *dsa, BIGNUM *r, BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(DSA *dsa); int (*finish)(DSA *dsa); int flags; char *app_data; int (*dsa_paramgen)(DSA *dsa, int bits, const unsigned char *seed, int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int (*dsa_keygen)(DSA *dsa); }; struct dsa_st { int pad; long version; int write_params; BIGNUM *p; BIGNUM *q; BIGNUM *g; BIGNUM *pub_key; BIGNUM *priv_key; BIGNUM *kinv; BIGNUM *r; int flags; BN_MONT_CTX *method_mont_p; int references; CRYPTO_EX_DATA ex_data; const DSA_METHOD *meth; ENGINE *engine; }; # 194 "/usr/include/openssl/dsa.h" 3 4 DSA *DSAparams_dup(DSA *x); DSA_SIG * DSA_SIG_new(void); void DSA_SIG_free(DSA_SIG *a); int i2d_DSA_SIG(const DSA_SIG *a, unsigned char **pp); DSA_SIG * d2i_DSA_SIG(DSA_SIG **v, const unsigned char **pp, long length); DSA_SIG * DSA_do_sign(const unsigned char *dgst,int dlen,DSA *dsa); int DSA_do_verify(const unsigned char *dgst,int dgst_len, DSA_SIG *sig,DSA *dsa); const DSA_METHOD *DSA_OpenSSL(void); void DSA_set_default_method(const DSA_METHOD *); const DSA_METHOD *DSA_get_default_method(void); int DSA_set_method(DSA *dsa, const DSA_METHOD *); DSA * DSA_new(void); DSA * DSA_new_method(ENGINE *engine); void DSA_free (DSA *r); int DSA_up_ref(DSA *r); int DSA_size(const DSA *); int DSA_sign_setup( DSA *dsa,BN_CTX *ctx_in,BIGNUM **kinvp,BIGNUM **rp); int DSA_sign(int type,const unsigned char *dgst,int dlen, unsigned char *sig, unsigned int *siglen, DSA *dsa); int DSA_verify(int type,const unsigned char *dgst,int dgst_len, const unsigned char *sigbuf, int siglen, DSA *dsa); int DSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int DSA_set_ex_data(DSA *d, int idx, void *arg); void *DSA_get_ex_data(DSA *d, int idx); DSA * d2i_DSAPublicKey(DSA **a, const unsigned char **pp, long length); DSA * d2i_DSAPrivateKey(DSA **a, const unsigned char **pp, long length); DSA * d2i_DSAparams(DSA **a, const unsigned char **pp, long length); DSA * DSA_generate_parameters(int bits, unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret,void (*callback)(int, int, void *),void *cb_arg); int DSA_generate_parameters_ex(DSA *dsa, int bits, const unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int DSA_generate_key(DSA *a); int i2d_DSAPublicKey(const DSA *a, unsigned char **pp); int i2d_DSAPrivateKey(const DSA *a, unsigned char **pp); int i2d_DSAparams(const DSA *a,unsigned char **pp); int DSAparams_print(BIO *bp, const DSA *x); int DSA_print(BIO *bp, const DSA *x, int off); int DSAparams_print_fp(FILE *fp, const DSA *x); int DSA_print_fp(FILE *bp, const DSA *x, int off); # 267 "/usr/include/openssl/dsa.h" 3 4 DH *DSA_dup_DH(const DSA *r); int FIPS_dsa_builtin_paramgen(DSA *ret, size_t bits, size_t qbits, const EVP_MD *evpmd, const unsigned char *seed_in, size_t seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int FIPS_dsa_generate_pq(BN_CTX *ctx, size_t bits, size_t qbits, const EVP_MD *evpmd, unsigned char *seed, int seed_len, BIGNUM **p_ret, BIGNUM **q_ret, int *counter_ret, BN_GENCB *cb); int FIPS_dsa_generate_g(BN_CTX *ctx, BIGNUM *p, BIGNUM *q, BIGNUM **g_ret, unsigned long *h_ret, BN_GENCB *cb); # 293 "/usr/include/openssl/dsa.h" 3 4 void ERR_load_DSA_strings(void); # 346 "/usr/include/openssl/dsa.h" 3 4 } # 100 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/sha.h" 1 3 4 # 62 "/usr/include/openssl/sha.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/sha.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 64 "/usr/include/openssl/sha.h" 2 3 4 extern "C" { # 100 "/usr/include/openssl/sha.h" 3 4 typedef struct SHAstate_st { unsigned int h0,h1,h2,h3,h4; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num; } SHA_CTX; int private_SHA_Init(SHA_CTX *c); int SHA_Init(SHA_CTX *c); int SHA_Update(SHA_CTX *c, const void *data, size_t len); int SHA_Final(unsigned char *md, SHA_CTX *c); unsigned char *SHA(const unsigned char *d, size_t n, unsigned char *md); void SHA_Transform(SHA_CTX *c, const unsigned char *data); int SHA1_Init(SHA_CTX *c); int SHA1_Update(SHA_CTX *c, const void *data, size_t len); int SHA1_Final(unsigned char *md, SHA_CTX *c); unsigned char *SHA1(const unsigned char *d, size_t n, unsigned char *md); void SHA1_Transform(SHA_CTX *c, const unsigned char *data); # 132 "/usr/include/openssl/sha.h" 3 4 typedef struct SHA256state_st { unsigned int h[8]; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num,md_len; } SHA256_CTX; int SHA224_Init(SHA256_CTX *c); int SHA224_Update(SHA256_CTX *c, const void *data, size_t len); int SHA224_Final(unsigned char *md, SHA256_CTX *c); unsigned char *SHA224(const unsigned char *d, size_t n,unsigned char *md); int SHA256_Init(SHA256_CTX *c); int SHA256_Update(SHA256_CTX *c, const void *data, size_t len); int SHA256_Final(unsigned char *md, SHA256_CTX *c); unsigned char *SHA256(const unsigned char *d, size_t n,unsigned char *md); void SHA256_Transform(SHA256_CTX *c, const unsigned char *data); # 175 "/usr/include/openssl/sha.h" 3 4 typedef struct SHA512state_st { unsigned long long h[8]; unsigned long long Nl,Nh; union { unsigned long long d[16]; unsigned char p[(16*8)]; } u; unsigned int num,md_len; } SHA512_CTX; int SHA384_Init(SHA512_CTX *c); int SHA384_Update(SHA512_CTX *c, const void *data, size_t len); int SHA384_Final(unsigned char *md, SHA512_CTX *c); unsigned char *SHA384(const unsigned char *d, size_t n,unsigned char *md); int SHA512_Init(SHA512_CTX *c); int SHA512_Update(SHA512_CTX *c, const void *data, size_t len); int SHA512_Final(unsigned char *md, SHA512_CTX *c); unsigned char *SHA512(const unsigned char *d, size_t n,unsigned char *md); void SHA512_Transform(SHA512_CTX *c, const unsigned char *data); } # 108 "/usr/include/openssl/x509.h" 2 3 4 extern "C" { # 137 "/usr/include/openssl/x509.h" 3 4 typedef struct X509_objects_st { int nid; int (*a2i)(void); int (*i2a)(void); } X509_OBJECTS; struct X509_algor_st { ASN1_OBJECT *algorithm; ASN1_TYPE *parameter; } ; typedef struct stack_st_X509_ALGOR X509_ALGORS; typedef struct X509_val_st { ASN1_TIME *notBefore; ASN1_TIME *notAfter; } X509_VAL; struct X509_pubkey_st { X509_ALGOR *algor; ASN1_BIT_STRING *public_key; EVP_PKEY *pkey; }; typedef struct X509_sig_st { X509_ALGOR *algor; ASN1_OCTET_STRING *digest; } X509_SIG; typedef struct X509_name_entry_st { ASN1_OBJECT *object; ASN1_STRING *value; int set; int size; } X509_NAME_ENTRY; struct stack_st_X509_NAME_ENTRY { _STACK stack; }; struct X509_name_st { struct stack_st_X509_NAME_ENTRY *entries; int modified; BUF_MEM *bytes; unsigned char *canon_enc; int canon_enclen; } ; struct stack_st_X509_NAME { _STACK stack; }; typedef struct X509_extension_st { ASN1_OBJECT *object; ASN1_BOOLEAN critical; ASN1_OCTET_STRING *value; } X509_EXTENSION; typedef struct stack_st_X509_EXTENSION X509_EXTENSIONS; struct stack_st_X509_EXTENSION { _STACK stack; }; typedef struct x509_attributes_st { ASN1_OBJECT *object; int single; union { char *ptr; struct stack_st_ASN1_TYPE *set; ASN1_TYPE *single; } value; } X509_ATTRIBUTE; struct stack_st_X509_ATTRIBUTE { _STACK stack; }; typedef struct X509_req_info_st { ASN1_ENCODING enc; ASN1_INTEGER *version; X509_NAME *subject; X509_PUBKEY *pubkey; struct stack_st_X509_ATTRIBUTE *attributes; } X509_REQ_INFO; typedef struct X509_req_st { X509_REQ_INFO *req_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; } X509_REQ; typedef struct x509_cinf_st { ASN1_INTEGER *version; ASN1_INTEGER *serialNumber; X509_ALGOR *signature; X509_NAME *issuer; X509_VAL *validity; X509_NAME *subject; X509_PUBKEY *key; ASN1_BIT_STRING *issuerUID; ASN1_BIT_STRING *subjectUID; struct stack_st_X509_EXTENSION *extensions; ASN1_ENCODING enc; } X509_CINF; typedef struct x509_cert_aux_st { struct stack_st_ASN1_OBJECT *trust; struct stack_st_ASN1_OBJECT *reject; ASN1_UTF8STRING *alias; ASN1_OCTET_STRING *keyid; struct stack_st_X509_ALGOR *other; } X509_CERT_AUX; struct x509_st { X509_CINF *cert_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int valid; int references; char *name; CRYPTO_EX_DATA ex_data; long ex_pathlen; long ex_pcpathlen; unsigned long ex_flags; unsigned long ex_kusage; unsigned long ex_xkusage; unsigned long ex_nscert; ASN1_OCTET_STRING *skid; AUTHORITY_KEYID *akid; X509_POLICY_CACHE *policy_cache; struct stack_st_DIST_POINT *crldp; struct stack_st_GENERAL_NAME *altname; NAME_CONSTRAINTS *nc; struct stack_st_IPAddressFamily *rfc3779_addr; struct ASIdentifiers_st *rfc3779_asid; unsigned char sha1_hash[20]; X509_CERT_AUX *aux; } ; struct stack_st_X509 { _STACK stack; }; typedef struct x509_trust_st { int trust; int flags; int (*check_trust)(struct x509_trust_st *, X509 *, int); char *name; int arg1; void *arg2; } X509_TRUST; struct stack_st_X509_TRUST { _STACK stack; }; typedef struct x509_cert_pair_st { X509 *forward; X509 *reverse; } X509_CERT_PAIR; # 434 "/usr/include/openssl/x509.h" 3 4 struct x509_revoked_st { ASN1_INTEGER *serialNumber; ASN1_TIME *revocationDate; struct stack_st_X509_EXTENSION *extensions; struct stack_st_GENERAL_NAME *issuer; int reason; int sequence; }; struct stack_st_X509_REVOKED { _STACK stack; }; typedef struct X509_crl_info_st { ASN1_INTEGER *version; X509_ALGOR *sig_alg; X509_NAME *issuer; ASN1_TIME *lastUpdate; ASN1_TIME *nextUpdate; struct stack_st_X509_REVOKED *revoked; struct stack_st_X509_EXTENSION *extensions; ASN1_ENCODING enc; } X509_CRL_INFO; struct X509_crl_st { X509_CRL_INFO *crl; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; int flags; AUTHORITY_KEYID *akid; ISSUING_DIST_POINT *idp; int idp_flags; int idp_reasons; ASN1_INTEGER *crl_number; ASN1_INTEGER *base_crl_number; unsigned char sha1_hash[20]; struct stack_st_GENERAL_NAMES *issuers; const X509_CRL_METHOD *meth; void *meth_data; } ; struct stack_st_X509_CRL { _STACK stack; }; typedef struct private_key_st { int version; X509_ALGOR *enc_algor; ASN1_OCTET_STRING *enc_pkey; EVP_PKEY *dec_pkey; int key_length; char *key_data; int key_free; EVP_CIPHER_INFO cipher; int references; } X509_PKEY; typedef struct X509_info_st { X509 *x509; X509_CRL *crl; X509_PKEY *x_pkey; EVP_CIPHER_INFO enc_cipher; int enc_len; char *enc_data; int references; } X509_INFO; struct stack_st_X509_INFO { _STACK stack; }; typedef struct Netscape_spkac_st { X509_PUBKEY *pubkey; ASN1_IA5STRING *challenge; } NETSCAPE_SPKAC; typedef struct Netscape_spki_st { NETSCAPE_SPKAC *spkac; X509_ALGOR *sig_algor; ASN1_BIT_STRING *signature; } NETSCAPE_SPKI; typedef struct Netscape_certificate_sequence { ASN1_OBJECT *type; struct stack_st_X509 *certs; } NETSCAPE_CERT_SEQUENCE; # 560 "/usr/include/openssl/x509.h" 3 4 typedef struct PBEPARAM_st { ASN1_OCTET_STRING *salt; ASN1_INTEGER *iter; } PBEPARAM; typedef struct PBE2PARAM_st { X509_ALGOR *keyfunc; X509_ALGOR *encryption; } PBE2PARAM; typedef struct PBKDF2PARAM_st { ASN1_TYPE *salt; ASN1_INTEGER *iter; ASN1_INTEGER *keylength; X509_ALGOR *prf; } PBKDF2PARAM; struct pkcs8_priv_key_info_st { int broken; ASN1_INTEGER *version; X509_ALGOR *pkeyalg; ASN1_TYPE *pkey; struct stack_st_X509_ATTRIBUTE *attributes; }; } # 1 "/usr/include/openssl/x509_vfy.h" 1 3 4 # 68 "/usr/include/openssl/x509_vfy.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 69 "/usr/include/openssl/x509_vfy.h" 2 3 4 # 1 "/usr/include/openssl/lhash.h" 1 3 4 # 66 "/usr/include/openssl/lhash.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 67 "/usr/include/openssl/lhash.h" 2 3 4 # 76 "/usr/include/openssl/lhash.h" 3 4 extern "C" { typedef struct lhash_node_st { void *data; struct lhash_node_st *next; unsigned long hash; } LHASH_NODE; typedef int (*LHASH_COMP_FN_TYPE)(const void *, const void *); typedef unsigned long (*LHASH_HASH_FN_TYPE)(const void *); typedef void (*LHASH_DOALL_FN_TYPE)(void *); typedef void (*LHASH_DOALL_ARG_FN_TYPE)(void *, void *); # 138 "/usr/include/openssl/lhash.h" 3 4 typedef struct lhash_st { LHASH_NODE **b; LHASH_COMP_FN_TYPE comp; LHASH_HASH_FN_TYPE hash; unsigned int num_nodes; unsigned int num_alloc_nodes; unsigned int p; unsigned int pmax; unsigned long up_load; unsigned long down_load; unsigned long num_items; unsigned long num_expands; unsigned long num_expand_reallocs; unsigned long num_contracts; unsigned long num_contract_reallocs; unsigned long num_hash_calls; unsigned long num_comp_calls; unsigned long num_insert; unsigned long num_replace; unsigned long num_delete; unsigned long num_no_delete; unsigned long num_retrieve; unsigned long num_retrieve_miss; unsigned long num_hash_comps; int error; } _LHASH; # 175 "/usr/include/openssl/lhash.h" 3 4 _LHASH *lh_new(LHASH_HASH_FN_TYPE h, LHASH_COMP_FN_TYPE c); void lh_free(_LHASH *lh); void *lh_insert(_LHASH *lh, void *data); void *lh_delete(_LHASH *lh, const void *data); void *lh_retrieve(_LHASH *lh, const void *data); void lh_doall(_LHASH *lh, LHASH_DOALL_FN_TYPE func); void lh_doall_arg(_LHASH *lh, LHASH_DOALL_ARG_FN_TYPE func, void *arg); unsigned long lh_strhash(const char *c); unsigned long lh_num_items(const _LHASH *lh); void lh_stats(const _LHASH *lh, FILE *out); void lh_node_stats(const _LHASH *lh, FILE *out); void lh_node_usage_stats(const _LHASH *lh, FILE *out); void lh_stats_bio(const _LHASH *lh, BIO *out); void lh_node_stats_bio(const _LHASH *lh, BIO *out); void lh_node_usage_stats_bio(const _LHASH *lh, BIO *out); # 233 "/usr/include/openssl/lhash.h" 3 4 struct lhash_st_OPENSSL_STRING { int dummy; }; struct lhash_st_OPENSSL_CSTRING { int dummy; }; } # 71 "/usr/include/openssl/x509_vfy.h" 2 3 4 extern "C" { # 91 "/usr/include/openssl/x509_vfy.h" 3 4 typedef struct x509_file_st { int num_paths; int num_alloced; char **paths; int *path_type; } X509_CERT_FILE_CTX; # 123 "/usr/include/openssl/x509_vfy.h" 3 4 typedef struct x509_object_st { int type; union { char *ptr; X509 *x509; X509_CRL *crl; EVP_PKEY *pkey; } data; } X509_OBJECT; typedef struct x509_lookup_st X509_LOOKUP; struct stack_st_X509_LOOKUP { _STACK stack; }; struct stack_st_X509_OBJECT { _STACK stack; }; typedef struct x509_lookup_method_st { const char *name; int (*new_item)(X509_LOOKUP *ctx); void (*free)(X509_LOOKUP *ctx); int (*init)(X509_LOOKUP *ctx); int (*shutdown)(X509_LOOKUP *ctx); int (*ctrl)(X509_LOOKUP *ctx,int cmd,const char *argc,long argl, char **ret); int (*get_by_subject)(X509_LOOKUP *ctx,int type,X509_NAME *name, X509_OBJECT *ret); int (*get_by_issuer_serial)(X509_LOOKUP *ctx,int type,X509_NAME *name, ASN1_INTEGER *serial,X509_OBJECT *ret); int (*get_by_fingerprint)(X509_LOOKUP *ctx,int type, unsigned char *bytes,int len, X509_OBJECT *ret); int (*get_by_alias)(X509_LOOKUP *ctx,int type,char *str,int len, X509_OBJECT *ret); } X509_LOOKUP_METHOD; typedef struct X509_VERIFY_PARAM_st { char *name; time_t check_time; unsigned long inh_flags; unsigned long flags; int purpose; int trust; int depth; struct stack_st_ASN1_OBJECT *policies; } X509_VERIFY_PARAM; struct stack_st_X509_VERIFY_PARAM { _STACK stack; }; struct x509_store_st { int cache; struct stack_st_X509_OBJECT *objs; struct stack_st_X509_LOOKUP *get_cert_methods; X509_VERIFY_PARAM *param; int (*verify)(X509_STORE_CTX *ctx); int (*verify_cb)(int ok,X509_STORE_CTX *ctx); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer); int (*check_revocation)(X509_STORE_CTX *ctx); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x); struct stack_st_X509 * (*lookup_certs)(X509_STORE_CTX *ctx, X509_NAME *nm); struct stack_st_X509_CRL * (*lookup_crls)(X509_STORE_CTX *ctx, X509_NAME *nm); int (*cleanup)(X509_STORE_CTX *ctx); CRYPTO_EX_DATA ex_data; int references; } ; int X509_STORE_set_depth(X509_STORE *store, int depth); struct x509_lookup_st { int init; int skip; X509_LOOKUP_METHOD *method; char *method_data; X509_STORE *store_ctx; } ; struct x509_store_ctx_st { X509_STORE *ctx; int current_method; X509 *cert; struct stack_st_X509 *untrusted; struct stack_st_X509_CRL *crls; X509_VERIFY_PARAM *param; void *other_ctx; int (*verify)(X509_STORE_CTX *ctx); int (*verify_cb)(int ok,X509_STORE_CTX *ctx); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer); int (*check_revocation)(X509_STORE_CTX *ctx); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x); int (*check_policy)(X509_STORE_CTX *ctx); struct stack_st_X509 * (*lookup_certs)(X509_STORE_CTX *ctx, X509_NAME *nm); struct stack_st_X509_CRL * (*lookup_crls)(X509_STORE_CTX *ctx, X509_NAME *nm); int (*cleanup)(X509_STORE_CTX *ctx); int valid; int last_untrusted; struct stack_st_X509 *chain; X509_POLICY_TREE *tree; int explicit_policy; int error_depth; int error; X509 *current_cert; X509 *current_issuer; X509_CRL *current_crl; int current_crl_score; unsigned int current_reasons; X509_STORE_CTX *parent; CRYPTO_EX_DATA ex_data; } ; void X509_STORE_CTX_set_depth(X509_STORE_CTX *ctx, int depth); # 413 "/usr/include/openssl/x509_vfy.h" 3 4 int X509_OBJECT_idx_by_subject(struct stack_st_X509_OBJECT *h, int type, X509_NAME *name); X509_OBJECT *X509_OBJECT_retrieve_by_subject(struct stack_st_X509_OBJECT *h,int type,X509_NAME *name); X509_OBJECT *X509_OBJECT_retrieve_match(struct stack_st_X509_OBJECT *h, X509_OBJECT *x); void X509_OBJECT_up_ref_count(X509_OBJECT *a); void X509_OBJECT_free_contents(X509_OBJECT *a); X509_STORE *X509_STORE_new(void ); void X509_STORE_free(X509_STORE *v); struct stack_st_X509* X509_STORE_get1_certs(X509_STORE_CTX *st, X509_NAME *nm); struct stack_st_X509_CRL* X509_STORE_get1_crls(X509_STORE_CTX *st, X509_NAME *nm); int X509_STORE_set_flags(X509_STORE *ctx, unsigned long flags); int X509_STORE_set_purpose(X509_STORE *ctx, int purpose); int X509_STORE_set_trust(X509_STORE *ctx, int trust); int X509_STORE_set1_param(X509_STORE *ctx, X509_VERIFY_PARAM *pm); void X509_STORE_set_verify_cb(X509_STORE *ctx, int (*verify_cb)(int, X509_STORE_CTX *)); X509_STORE_CTX *X509_STORE_CTX_new(void); int X509_STORE_CTX_get1_issuer(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); void X509_STORE_CTX_free(X509_STORE_CTX *ctx); int X509_STORE_CTX_init(X509_STORE_CTX *ctx, X509_STORE *store, X509 *x509, struct stack_st_X509 *chain); void X509_STORE_CTX_trusted_stack(X509_STORE_CTX *ctx, struct stack_st_X509 *sk); void X509_STORE_CTX_cleanup(X509_STORE_CTX *ctx); X509_LOOKUP *X509_STORE_add_lookup(X509_STORE *v, X509_LOOKUP_METHOD *m); X509_LOOKUP_METHOD *X509_LOOKUP_hash_dir(void); X509_LOOKUP_METHOD *X509_LOOKUP_file(void); int X509_STORE_add_cert(X509_STORE *ctx, X509 *x); int X509_STORE_add_crl(X509_STORE *ctx, X509_CRL *x); int X509_STORE_get_by_subject(X509_STORE_CTX *vs,int type,X509_NAME *name, X509_OBJECT *ret); int X509_LOOKUP_ctrl(X509_LOOKUP *ctx, int cmd, const char *argc, long argl, char **ret); int X509_load_cert_file(X509_LOOKUP *ctx, const char *file, int type); int X509_load_crl_file(X509_LOOKUP *ctx, const char *file, int type); int X509_load_cert_crl_file(X509_LOOKUP *ctx, const char *file, int type); X509_LOOKUP *X509_LOOKUP_new(X509_LOOKUP_METHOD *method); void X509_LOOKUP_free(X509_LOOKUP *ctx); int X509_LOOKUP_init(X509_LOOKUP *ctx); int X509_LOOKUP_by_subject(X509_LOOKUP *ctx, int type, X509_NAME *name, X509_OBJECT *ret); int X509_LOOKUP_by_issuer_serial(X509_LOOKUP *ctx, int type, X509_NAME *name, ASN1_INTEGER *serial, X509_OBJECT *ret); int X509_LOOKUP_by_fingerprint(X509_LOOKUP *ctx, int type, unsigned char *bytes, int len, X509_OBJECT *ret); int X509_LOOKUP_by_alias(X509_LOOKUP *ctx, int type, char *str, int len, X509_OBJECT *ret); int X509_LOOKUP_shutdown(X509_LOOKUP *ctx); int X509_STORE_load_locations (X509_STORE *ctx, const char *file, const char *dir); int X509_STORE_set_default_paths(X509_STORE *ctx); int X509_STORE_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int X509_STORE_CTX_set_ex_data(X509_STORE_CTX *ctx,int idx,void *data); void * X509_STORE_CTX_get_ex_data(X509_STORE_CTX *ctx,int idx); int X509_STORE_CTX_get_error(X509_STORE_CTX *ctx); void X509_STORE_CTX_set_error(X509_STORE_CTX *ctx,int s); int X509_STORE_CTX_get_error_depth(X509_STORE_CTX *ctx); X509 * X509_STORE_CTX_get_current_cert(X509_STORE_CTX *ctx); X509 *X509_STORE_CTX_get0_current_issuer(X509_STORE_CTX *ctx); X509_CRL *X509_STORE_CTX_get0_current_crl(X509_STORE_CTX *ctx); X509_STORE_CTX *X509_STORE_CTX_get0_parent_ctx(X509_STORE_CTX *ctx); struct stack_st_X509 *X509_STORE_CTX_get_chain(X509_STORE_CTX *ctx); struct stack_st_X509 *X509_STORE_CTX_get1_chain(X509_STORE_CTX *ctx); void X509_STORE_CTX_set_cert(X509_STORE_CTX *c,X509 *x); void X509_STORE_CTX_set_chain(X509_STORE_CTX *c,struct stack_st_X509 *sk); void X509_STORE_CTX_set0_crls(X509_STORE_CTX *c,struct stack_st_X509_CRL *sk); int X509_STORE_CTX_set_purpose(X509_STORE_CTX *ctx, int purpose); int X509_STORE_CTX_set_trust(X509_STORE_CTX *ctx, int trust); int X509_STORE_CTX_purpose_inherit(X509_STORE_CTX *ctx, int def_purpose, int purpose, int trust); void X509_STORE_CTX_set_flags(X509_STORE_CTX *ctx, unsigned long flags); void X509_STORE_CTX_set_time(X509_STORE_CTX *ctx, unsigned long flags, time_t t); void X509_STORE_CTX_set_verify_cb(X509_STORE_CTX *ctx, int (*verify_cb)(int, X509_STORE_CTX *)); X509_POLICY_TREE *X509_STORE_CTX_get0_policy_tree(X509_STORE_CTX *ctx); int X509_STORE_CTX_get_explicit_policy(X509_STORE_CTX *ctx); X509_VERIFY_PARAM *X509_STORE_CTX_get0_param(X509_STORE_CTX *ctx); void X509_STORE_CTX_set0_param(X509_STORE_CTX *ctx, X509_VERIFY_PARAM *param); int X509_STORE_CTX_set_default(X509_STORE_CTX *ctx, const char *name); X509_VERIFY_PARAM *X509_VERIFY_PARAM_new(void); void X509_VERIFY_PARAM_free(X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_inherit(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from); int X509_VERIFY_PARAM_set1(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from); int X509_VERIFY_PARAM_set1_name(X509_VERIFY_PARAM *param, const char *name); int X509_VERIFY_PARAM_set_flags(X509_VERIFY_PARAM *param, unsigned long flags); int X509_VERIFY_PARAM_clear_flags(X509_VERIFY_PARAM *param, unsigned long flags); unsigned long X509_VERIFY_PARAM_get_flags(X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_set_purpose(X509_VERIFY_PARAM *param, int purpose); int X509_VERIFY_PARAM_set_trust(X509_VERIFY_PARAM *param, int trust); void X509_VERIFY_PARAM_set_depth(X509_VERIFY_PARAM *param, int depth); void X509_VERIFY_PARAM_set_time(X509_VERIFY_PARAM *param, time_t t); int X509_VERIFY_PARAM_add0_policy(X509_VERIFY_PARAM *param, ASN1_OBJECT *policy); int X509_VERIFY_PARAM_set1_policies(X509_VERIFY_PARAM *param, struct stack_st_ASN1_OBJECT *policies); int X509_VERIFY_PARAM_get_depth(const X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_add0_table(X509_VERIFY_PARAM *param); const X509_VERIFY_PARAM *X509_VERIFY_PARAM_lookup(const char *name); void X509_VERIFY_PARAM_table_cleanup(void); int X509_policy_check(X509_POLICY_TREE **ptree, int *pexplicit_policy, struct stack_st_X509 *certs, struct stack_st_ASN1_OBJECT *policy_oids, unsigned int flags); void X509_policy_tree_free(X509_POLICY_TREE *tree); int X509_policy_tree_level_count(const X509_POLICY_TREE *tree); X509_POLICY_LEVEL * X509_policy_tree_get0_level(const X509_POLICY_TREE *tree, int i); struct stack_st_X509_POLICY_NODE * X509_policy_tree_get0_policies(const X509_POLICY_TREE *tree); struct stack_st_X509_POLICY_NODE * X509_policy_tree_get0_user_policies(const X509_POLICY_TREE *tree); int X509_policy_level_node_count(X509_POLICY_LEVEL *level); X509_POLICY_NODE *X509_policy_level_get0_node(X509_POLICY_LEVEL *level, int i); const ASN1_OBJECT *X509_policy_node_get0_policy(const X509_POLICY_NODE *node); struct stack_st_POLICYQUALINFO * X509_policy_node_get0_qualifiers(const X509_POLICY_NODE *node); const X509_POLICY_NODE * X509_policy_node_get0_parent(const X509_POLICY_NODE *node); } # 601 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/pkcs7.h" 1 3 4 # 64 "/usr/include/openssl/pkcs7.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 65 "/usr/include/openssl/pkcs7.h" 2 3 4 extern "C" { # 86 "/usr/include/openssl/pkcs7.h" 3 4 typedef struct pkcs7_issuer_and_serial_st { X509_NAME *issuer; ASN1_INTEGER *serial; } PKCS7_ISSUER_AND_SERIAL; typedef struct pkcs7_signer_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *digest_alg; struct stack_st_X509_ATTRIBUTE *auth_attr; X509_ALGOR *digest_enc_alg; ASN1_OCTET_STRING *enc_digest; struct stack_st_X509_ATTRIBUTE *unauth_attr; EVP_PKEY *pkey; } PKCS7_SIGNER_INFO; struct stack_st_PKCS7_SIGNER_INFO { _STACK stack; }; typedef struct pkcs7_recip_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *key_enc_algor; ASN1_OCTET_STRING *enc_key; X509 *cert; } PKCS7_RECIP_INFO; struct stack_st_PKCS7_RECIP_INFO { _STACK stack; }; typedef struct pkcs7_signed_st { ASN1_INTEGER *version; struct stack_st_X509_ALGOR *md_algs; struct stack_st_X509 *cert; struct stack_st_X509_CRL *crl; struct stack_st_PKCS7_SIGNER_INFO *signer_info; struct pkcs7_st *contents; } PKCS7_SIGNED; typedef struct pkcs7_enc_content_st { ASN1_OBJECT *content_type; X509_ALGOR *algorithm; ASN1_OCTET_STRING *enc_data; const EVP_CIPHER *cipher; } PKCS7_ENC_CONTENT; typedef struct pkcs7_enveloped_st { ASN1_INTEGER *version; struct stack_st_PKCS7_RECIP_INFO *recipientinfo; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENVELOPE; typedef struct pkcs7_signedandenveloped_st { ASN1_INTEGER *version; struct stack_st_X509_ALGOR *md_algs; struct stack_st_X509 *cert; struct stack_st_X509_CRL *crl; struct stack_st_PKCS7_SIGNER_INFO *signer_info; PKCS7_ENC_CONTENT *enc_data; struct stack_st_PKCS7_RECIP_INFO *recipientinfo; } PKCS7_SIGN_ENVELOPE; typedef struct pkcs7_digest_st { ASN1_INTEGER *version; X509_ALGOR *md; struct pkcs7_st *contents; ASN1_OCTET_STRING *digest; } PKCS7_DIGEST; typedef struct pkcs7_encrypted_st { ASN1_INTEGER *version; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENCRYPT; typedef struct pkcs7_st { unsigned char *asn1; long length; int state; int detached; ASN1_OBJECT *type; union { char *ptr; ASN1_OCTET_STRING *data; PKCS7_SIGNED *sign; PKCS7_ENVELOPE *enveloped; PKCS7_SIGN_ENVELOPE *signed_and_enveloped; PKCS7_DIGEST *digest; PKCS7_ENCRYPT *encrypted; ASN1_TYPE *other; } d; } PKCS7; struct stack_st_PKCS7 { _STACK stack; }; # 275 "/usr/include/openssl/pkcs7.h" 3 4 PKCS7_ISSUER_AND_SERIAL *PKCS7_ISSUER_AND_SERIAL_new(void); void PKCS7_ISSUER_AND_SERIAL_free(PKCS7_ISSUER_AND_SERIAL *a); PKCS7_ISSUER_AND_SERIAL *d2i_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL **a, const unsigned char **in, long len); int i2d_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ISSUER_AND_SERIAL_it; int PKCS7_ISSUER_AND_SERIAL_digest(PKCS7_ISSUER_AND_SERIAL *data,const EVP_MD *type, unsigned char *md,unsigned int *len); PKCS7 *d2i_PKCS7_fp(FILE *fp,PKCS7 **p7); int i2d_PKCS7_fp(FILE *fp,PKCS7 *p7); PKCS7 *PKCS7_dup(PKCS7 *p7); PKCS7 *d2i_PKCS7_bio(BIO *bp,PKCS7 **p7); int i2d_PKCS7_bio(BIO *bp,PKCS7 *p7); int i2d_PKCS7_bio_stream(BIO *out, PKCS7 *p7, BIO *in, int flags); int PEM_write_bio_PKCS7_stream(BIO *out, PKCS7 *p7, BIO *in, int flags); PKCS7_SIGNER_INFO *PKCS7_SIGNER_INFO_new(void); void PKCS7_SIGNER_INFO_free(PKCS7_SIGNER_INFO *a); PKCS7_SIGNER_INFO *d2i_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO **a, const unsigned char **in, long len); int i2d_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGNER_INFO_it; PKCS7_RECIP_INFO *PKCS7_RECIP_INFO_new(void); void PKCS7_RECIP_INFO_free(PKCS7_RECIP_INFO *a); PKCS7_RECIP_INFO *d2i_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO **a, const unsigned char **in, long len); int i2d_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS7_RECIP_INFO_it; PKCS7_SIGNED *PKCS7_SIGNED_new(void); void PKCS7_SIGNED_free(PKCS7_SIGNED *a); PKCS7_SIGNED *d2i_PKCS7_SIGNED(PKCS7_SIGNED **a, const unsigned char **in, long len); int i2d_PKCS7_SIGNED(PKCS7_SIGNED *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGNED_it; PKCS7_ENC_CONTENT *PKCS7_ENC_CONTENT_new(void); void PKCS7_ENC_CONTENT_free(PKCS7_ENC_CONTENT *a); PKCS7_ENC_CONTENT *d2i_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT **a, const unsigned char **in, long len); int i2d_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENC_CONTENT_it; PKCS7_ENVELOPE *PKCS7_ENVELOPE_new(void); void PKCS7_ENVELOPE_free(PKCS7_ENVELOPE *a); PKCS7_ENVELOPE *d2i_PKCS7_ENVELOPE(PKCS7_ENVELOPE **a, const unsigned char **in, long len); int i2d_PKCS7_ENVELOPE(PKCS7_ENVELOPE *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENVELOPE_it; PKCS7_SIGN_ENVELOPE *PKCS7_SIGN_ENVELOPE_new(void); void PKCS7_SIGN_ENVELOPE_free(PKCS7_SIGN_ENVELOPE *a); PKCS7_SIGN_ENVELOPE *d2i_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE **a, const unsigned char **in, long len); int i2d_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGN_ENVELOPE_it; PKCS7_DIGEST *PKCS7_DIGEST_new(void); void PKCS7_DIGEST_free(PKCS7_DIGEST *a); PKCS7_DIGEST *d2i_PKCS7_DIGEST(PKCS7_DIGEST **a, const unsigned char **in, long len); int i2d_PKCS7_DIGEST(PKCS7_DIGEST *a, unsigned char **out); extern const ASN1_ITEM PKCS7_DIGEST_it; PKCS7_ENCRYPT *PKCS7_ENCRYPT_new(void); void PKCS7_ENCRYPT_free(PKCS7_ENCRYPT *a); PKCS7_ENCRYPT *d2i_PKCS7_ENCRYPT(PKCS7_ENCRYPT **a, const unsigned char **in, long len); int i2d_PKCS7_ENCRYPT(PKCS7_ENCRYPT *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENCRYPT_it; PKCS7 *PKCS7_new(void); void PKCS7_free(PKCS7 *a); PKCS7 *d2i_PKCS7(PKCS7 **a, const unsigned char **in, long len); int i2d_PKCS7(PKCS7 *a, unsigned char **out); extern const ASN1_ITEM PKCS7_it; extern const ASN1_ITEM PKCS7_ATTR_SIGN_it; extern const ASN1_ITEM PKCS7_ATTR_VERIFY_it; int i2d_PKCS7_NDEF(PKCS7 *a, unsigned char **out); int PKCS7_print_ctx(BIO *out, PKCS7 *x, int indent, const ASN1_PCTX *pctx); long PKCS7_ctrl(PKCS7 *p7, int cmd, long larg, char *parg); int PKCS7_set_type(PKCS7 *p7, int type); int PKCS7_set0_type_other(PKCS7 *p7, int type, ASN1_TYPE *other); int PKCS7_set_content(PKCS7 *p7, PKCS7 *p7_data); int PKCS7_SIGNER_INFO_set(PKCS7_SIGNER_INFO *p7i, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst); int PKCS7_SIGNER_INFO_sign(PKCS7_SIGNER_INFO *si); int PKCS7_add_signer(PKCS7 *p7, PKCS7_SIGNER_INFO *p7i); int PKCS7_add_certificate(PKCS7 *p7, X509 *x509); int PKCS7_add_crl(PKCS7 *p7, X509_CRL *x509); int PKCS7_content_new(PKCS7 *p7, int nid); int PKCS7_dataVerify(X509_STORE *cert_store, X509_STORE_CTX *ctx, BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si); int PKCS7_signatureVerify(BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si, X509 *x509); BIO *PKCS7_dataInit(PKCS7 *p7, BIO *bio); int PKCS7_dataFinal(PKCS7 *p7, BIO *bio); BIO *PKCS7_dataDecode(PKCS7 *p7, EVP_PKEY *pkey, BIO *in_bio, X509 *pcert); PKCS7_SIGNER_INFO *PKCS7_add_signature(PKCS7 *p7, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst); X509 *PKCS7_cert_from_signer_info(PKCS7 *p7, PKCS7_SIGNER_INFO *si); int PKCS7_set_digest(PKCS7 *p7, const EVP_MD *md); struct stack_st_PKCS7_SIGNER_INFO *PKCS7_get_signer_info(PKCS7 *p7); PKCS7_RECIP_INFO *PKCS7_add_recipient(PKCS7 *p7, X509 *x509); void PKCS7_SIGNER_INFO_get0_algs(PKCS7_SIGNER_INFO *si, EVP_PKEY **pk, X509_ALGOR **pdig, X509_ALGOR **psig); void PKCS7_RECIP_INFO_get0_alg(PKCS7_RECIP_INFO *ri, X509_ALGOR **penc); int PKCS7_add_recipient_info(PKCS7 *p7, PKCS7_RECIP_INFO *ri); int PKCS7_RECIP_INFO_set(PKCS7_RECIP_INFO *p7i, X509 *x509); int PKCS7_set_cipher(PKCS7 *p7, const EVP_CIPHER *cipher); int PKCS7_stream(unsigned char ***boundary, PKCS7 *p7); PKCS7_ISSUER_AND_SERIAL *PKCS7_get_issuer_and_serial(PKCS7 *p7, int idx); ASN1_OCTET_STRING *PKCS7_digest_from_attributes(struct stack_st_X509_ATTRIBUTE *sk); int PKCS7_add_signed_attribute(PKCS7_SIGNER_INFO *p7si,int nid,int type, void *data); int PKCS7_add_attribute (PKCS7_SIGNER_INFO *p7si, int nid, int atrtype, void *value); ASN1_TYPE *PKCS7_get_attribute(PKCS7_SIGNER_INFO *si, int nid); ASN1_TYPE *PKCS7_get_signed_attribute(PKCS7_SIGNER_INFO *si, int nid); int PKCS7_set_signed_attributes(PKCS7_SIGNER_INFO *p7si, struct stack_st_X509_ATTRIBUTE *sk); int PKCS7_set_attributes(PKCS7_SIGNER_INFO *p7si,struct stack_st_X509_ATTRIBUTE *sk); PKCS7 *PKCS7_sign(X509 *signcert, EVP_PKEY *pkey, struct stack_st_X509 *certs, BIO *data, int flags); PKCS7_SIGNER_INFO *PKCS7_sign_add_signer(PKCS7 *p7, X509 *signcert, EVP_PKEY *pkey, const EVP_MD *md, int flags); int PKCS7_final(PKCS7 *p7, BIO *data, int flags); int PKCS7_verify(PKCS7 *p7, struct stack_st_X509 *certs, X509_STORE *store, BIO *indata, BIO *out, int flags); struct stack_st_X509 *PKCS7_get0_signers(PKCS7 *p7, struct stack_st_X509 *certs, int flags); PKCS7 *PKCS7_encrypt(struct stack_st_X509 *certs, BIO *in, const EVP_CIPHER *cipher, int flags); int PKCS7_decrypt(PKCS7 *p7, EVP_PKEY *pkey, X509 *cert, BIO *data, int flags); int PKCS7_add_attrib_smimecap(PKCS7_SIGNER_INFO *si, struct stack_st_X509_ALGOR *cap); struct stack_st_X509_ALGOR *PKCS7_get_smimecap(PKCS7_SIGNER_INFO *si); int PKCS7_simple_smimecap(struct stack_st_X509_ALGOR *sk, int nid, int arg); int PKCS7_add_attrib_content_type(PKCS7_SIGNER_INFO *si, ASN1_OBJECT *coid); int PKCS7_add0_attrib_signing_time(PKCS7_SIGNER_INFO *si, ASN1_TIME *t); int PKCS7_add1_attrib_digest(PKCS7_SIGNER_INFO *si, const unsigned char *md, int mdlen); int SMIME_write_PKCS7(BIO *bio, PKCS7 *p7, BIO *data, int flags); PKCS7 *SMIME_read_PKCS7(BIO *bio, BIO **bcont); BIO *BIO_new_PKCS7(BIO *out, PKCS7 *p7); void ERR_load_PKCS7_strings(void); # 494 "/usr/include/openssl/pkcs7.h" 3 4 } # 602 "/usr/include/openssl/x509.h" 2 3 4 extern "C" { # 627 "/usr/include/openssl/x509.h" 3 4 void X509_CRL_set_default_method(const X509_CRL_METHOD *meth); X509_CRL_METHOD *X509_CRL_METHOD_new( int (*crl_init)(X509_CRL *crl), int (*crl_free)(X509_CRL *crl), int (*crl_lookup)(X509_CRL *crl, X509_REVOKED **ret, ASN1_INTEGER *ser, X509_NAME *issuer), int (*crl_verify)(X509_CRL *crl, EVP_PKEY *pk)); void X509_CRL_METHOD_free(X509_CRL_METHOD *m); void X509_CRL_set_meth_data(X509_CRL *crl, void *dat); void *X509_CRL_get_meth_data(X509_CRL *crl); const char *X509_verify_cert_error_string(long n); int X509_verify(X509 *a, EVP_PKEY *r); int X509_REQ_verify(X509_REQ *a, EVP_PKEY *r); int X509_CRL_verify(X509_CRL *a, EVP_PKEY *r); int NETSCAPE_SPKI_verify(NETSCAPE_SPKI *a, EVP_PKEY *r); NETSCAPE_SPKI * NETSCAPE_SPKI_b64_decode(const char *str, int len); char * NETSCAPE_SPKI_b64_encode(NETSCAPE_SPKI *x); EVP_PKEY *NETSCAPE_SPKI_get_pubkey(NETSCAPE_SPKI *x); int NETSCAPE_SPKI_set_pubkey(NETSCAPE_SPKI *x, EVP_PKEY *pkey); int NETSCAPE_SPKI_print(BIO *out, NETSCAPE_SPKI *spki); int X509_signature_dump(BIO *bp,const ASN1_STRING *sig, int indent); int X509_signature_print(BIO *bp,X509_ALGOR *alg, ASN1_STRING *sig); int X509_sign(X509 *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_sign_ctx(X509 *x, EVP_MD_CTX *ctx); int X509_REQ_sign(X509_REQ *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_REQ_sign_ctx(X509_REQ *x, EVP_MD_CTX *ctx); int X509_CRL_sign(X509_CRL *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_CRL_sign_ctx(X509_CRL *x, EVP_MD_CTX *ctx); int NETSCAPE_SPKI_sign(NETSCAPE_SPKI *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_pubkey_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_CRL_digest(const X509_CRL *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_REQ_digest(const X509_REQ *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_NAME_digest(const X509_NAME *data,const EVP_MD *type, unsigned char *md, unsigned int *len); X509 *d2i_X509_fp(FILE *fp, X509 **x509); int i2d_X509_fp(FILE *fp,X509 *x509); X509_CRL *d2i_X509_CRL_fp(FILE *fp,X509_CRL **crl); int i2d_X509_CRL_fp(FILE *fp,X509_CRL *crl); X509_REQ *d2i_X509_REQ_fp(FILE *fp,X509_REQ **req); int i2d_X509_REQ_fp(FILE *fp,X509_REQ *req); RSA *d2i_RSAPrivateKey_fp(FILE *fp,RSA **rsa); int i2d_RSAPrivateKey_fp(FILE *fp,RSA *rsa); RSA *d2i_RSAPublicKey_fp(FILE *fp,RSA **rsa); int i2d_RSAPublicKey_fp(FILE *fp,RSA *rsa); RSA *d2i_RSA_PUBKEY_fp(FILE *fp,RSA **rsa); int i2d_RSA_PUBKEY_fp(FILE *fp,RSA *rsa); DSA *d2i_DSA_PUBKEY_fp(FILE *fp, DSA **dsa); int i2d_DSA_PUBKEY_fp(FILE *fp, DSA *dsa); DSA *d2i_DSAPrivateKey_fp(FILE *fp, DSA **dsa); int i2d_DSAPrivateKey_fp(FILE *fp, DSA *dsa); EC_KEY *d2i_EC_PUBKEY_fp(FILE *fp, EC_KEY **eckey); int i2d_EC_PUBKEY_fp(FILE *fp, EC_KEY *eckey); EC_KEY *d2i_ECPrivateKey_fp(FILE *fp, EC_KEY **eckey); int i2d_ECPrivateKey_fp(FILE *fp, EC_KEY *eckey); X509_SIG *d2i_PKCS8_fp(FILE *fp,X509_SIG **p8); int i2d_PKCS8_fp(FILE *fp,X509_SIG *p8); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_fp(FILE *fp, PKCS8_PRIV_KEY_INFO **p8inf); int i2d_PKCS8_PRIV_KEY_INFO_fp(FILE *fp,PKCS8_PRIV_KEY_INFO *p8inf); int i2d_PKCS8PrivateKeyInfo_fp(FILE *fp, EVP_PKEY *key); int i2d_PrivateKey_fp(FILE *fp, EVP_PKEY *pkey); EVP_PKEY *d2i_PrivateKey_fp(FILE *fp, EVP_PKEY **a); int i2d_PUBKEY_fp(FILE *fp, EVP_PKEY *pkey); EVP_PKEY *d2i_PUBKEY_fp(FILE *fp, EVP_PKEY **a); X509 *d2i_X509_bio(BIO *bp,X509 **x509); int i2d_X509_bio(BIO *bp,X509 *x509); X509_CRL *d2i_X509_CRL_bio(BIO *bp,X509_CRL **crl); int i2d_X509_CRL_bio(BIO *bp,X509_CRL *crl); X509_REQ *d2i_X509_REQ_bio(BIO *bp,X509_REQ **req); int i2d_X509_REQ_bio(BIO *bp,X509_REQ *req); RSA *d2i_RSAPrivateKey_bio(BIO *bp,RSA **rsa); int i2d_RSAPrivateKey_bio(BIO *bp,RSA *rsa); RSA *d2i_RSAPublicKey_bio(BIO *bp,RSA **rsa); int i2d_RSAPublicKey_bio(BIO *bp,RSA *rsa); RSA *d2i_RSA_PUBKEY_bio(BIO *bp,RSA **rsa); int i2d_RSA_PUBKEY_bio(BIO *bp,RSA *rsa); DSA *d2i_DSA_PUBKEY_bio(BIO *bp, DSA **dsa); int i2d_DSA_PUBKEY_bio(BIO *bp, DSA *dsa); DSA *d2i_DSAPrivateKey_bio(BIO *bp, DSA **dsa); int i2d_DSAPrivateKey_bio(BIO *bp, DSA *dsa); EC_KEY *d2i_EC_PUBKEY_bio(BIO *bp, EC_KEY **eckey); int i2d_EC_PUBKEY_bio(BIO *bp, EC_KEY *eckey); EC_KEY *d2i_ECPrivateKey_bio(BIO *bp, EC_KEY **eckey); int i2d_ECPrivateKey_bio(BIO *bp, EC_KEY *eckey); X509_SIG *d2i_PKCS8_bio(BIO *bp,X509_SIG **p8); int i2d_PKCS8_bio(BIO *bp,X509_SIG *p8); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_bio(BIO *bp, PKCS8_PRIV_KEY_INFO **p8inf); int i2d_PKCS8_PRIV_KEY_INFO_bio(BIO *bp,PKCS8_PRIV_KEY_INFO *p8inf); int i2d_PKCS8PrivateKeyInfo_bio(BIO *bp, EVP_PKEY *key); int i2d_PrivateKey_bio(BIO *bp, EVP_PKEY *pkey); EVP_PKEY *d2i_PrivateKey_bio(BIO *bp, EVP_PKEY **a); int i2d_PUBKEY_bio(BIO *bp, EVP_PKEY *pkey); EVP_PKEY *d2i_PUBKEY_bio(BIO *bp, EVP_PKEY **a); X509 *X509_dup(X509 *x509); X509_ATTRIBUTE *X509_ATTRIBUTE_dup(X509_ATTRIBUTE *xa); X509_EXTENSION *X509_EXTENSION_dup(X509_EXTENSION *ex); X509_CRL *X509_CRL_dup(X509_CRL *crl); X509_REQ *X509_REQ_dup(X509_REQ *req); X509_ALGOR *X509_ALGOR_dup(X509_ALGOR *xn); int X509_ALGOR_set0(X509_ALGOR *alg, ASN1_OBJECT *aobj, int ptype, void *pval); void X509_ALGOR_get0(ASN1_OBJECT **paobj, int *pptype, void **ppval, X509_ALGOR *algor); void X509_ALGOR_set_md(X509_ALGOR *alg, const EVP_MD *md); int X509_ALGOR_cmp(const X509_ALGOR *a, const X509_ALGOR *b); X509_NAME *X509_NAME_dup(X509_NAME *xn); X509_NAME_ENTRY *X509_NAME_ENTRY_dup(X509_NAME_ENTRY *ne); int X509_cmp_time(const ASN1_TIME *s, time_t *t); int X509_cmp_current_time(const ASN1_TIME *s); ASN1_TIME * X509_time_adj(ASN1_TIME *s, long adj, time_t *t); ASN1_TIME * X509_time_adj_ex(ASN1_TIME *s, int offset_day, long offset_sec, time_t *t); ASN1_TIME * X509_gmtime_adj(ASN1_TIME *s, long adj); const char * X509_get_default_cert_area(void ); const char * X509_get_default_cert_dir(void ); const char * X509_get_default_cert_file(void ); const char * X509_get_default_cert_dir_env(void ); const char * X509_get_default_cert_file_env(void ); const char * X509_get_default_private_dir(void ); X509_REQ * X509_to_X509_REQ(X509 *x, EVP_PKEY *pkey, const EVP_MD *md); X509 * X509_REQ_to_X509(X509_REQ *r, int days,EVP_PKEY *pkey); X509_ALGOR *X509_ALGOR_new(void); void X509_ALGOR_free(X509_ALGOR *a); X509_ALGOR *d2i_X509_ALGOR(X509_ALGOR **a, const unsigned char **in, long len); int i2d_X509_ALGOR(X509_ALGOR *a, unsigned char **out); extern const ASN1_ITEM X509_ALGOR_it; X509_ALGORS *d2i_X509_ALGORS(X509_ALGORS **a, const unsigned char **in, long len); int i2d_X509_ALGORS(X509_ALGORS *a, unsigned char **out); extern const ASN1_ITEM X509_ALGORS_it; X509_VAL *X509_VAL_new(void); void X509_VAL_free(X509_VAL *a); X509_VAL *d2i_X509_VAL(X509_VAL **a, const unsigned char **in, long len); int i2d_X509_VAL(X509_VAL *a, unsigned char **out); extern const ASN1_ITEM X509_VAL_it; X509_PUBKEY *X509_PUBKEY_new(void); void X509_PUBKEY_free(X509_PUBKEY *a); X509_PUBKEY *d2i_X509_PUBKEY(X509_PUBKEY **a, const unsigned char **in, long len); int i2d_X509_PUBKEY(X509_PUBKEY *a, unsigned char **out); extern const ASN1_ITEM X509_PUBKEY_it; int X509_PUBKEY_set(X509_PUBKEY **x, EVP_PKEY *pkey); EVP_PKEY * X509_PUBKEY_get(X509_PUBKEY *key); int X509_get_pubkey_parameters(EVP_PKEY *pkey, struct stack_st_X509 *chain); int i2d_PUBKEY(EVP_PKEY *a,unsigned char **pp); EVP_PKEY * d2i_PUBKEY(EVP_PKEY **a,const unsigned char **pp, long length); int i2d_RSA_PUBKEY(RSA *a,unsigned char **pp); RSA * d2i_RSA_PUBKEY(RSA **a,const unsigned char **pp, long length); int i2d_DSA_PUBKEY(DSA *a,unsigned char **pp); DSA * d2i_DSA_PUBKEY(DSA **a,const unsigned char **pp, long length); int i2d_EC_PUBKEY(EC_KEY *a, unsigned char **pp); EC_KEY *d2i_EC_PUBKEY(EC_KEY **a, const unsigned char **pp, long length); X509_SIG *X509_SIG_new(void); void X509_SIG_free(X509_SIG *a); X509_SIG *d2i_X509_SIG(X509_SIG **a, const unsigned char **in, long len); int i2d_X509_SIG(X509_SIG *a, unsigned char **out); extern const ASN1_ITEM X509_SIG_it; X509_REQ_INFO *X509_REQ_INFO_new(void); void X509_REQ_INFO_free(X509_REQ_INFO *a); X509_REQ_INFO *d2i_X509_REQ_INFO(X509_REQ_INFO **a, const unsigned char **in, long len); int i2d_X509_REQ_INFO(X509_REQ_INFO *a, unsigned char **out); extern const ASN1_ITEM X509_REQ_INFO_it; X509_REQ *X509_REQ_new(void); void X509_REQ_free(X509_REQ *a); X509_REQ *d2i_X509_REQ(X509_REQ **a, const unsigned char **in, long len); int i2d_X509_REQ(X509_REQ *a, unsigned char **out); extern const ASN1_ITEM X509_REQ_it; X509_ATTRIBUTE *X509_ATTRIBUTE_new(void); void X509_ATTRIBUTE_free(X509_ATTRIBUTE *a); X509_ATTRIBUTE *d2i_X509_ATTRIBUTE(X509_ATTRIBUTE **a, const unsigned char **in, long len); int i2d_X509_ATTRIBUTE(X509_ATTRIBUTE *a, unsigned char **out); extern const ASN1_ITEM X509_ATTRIBUTE_it; X509_ATTRIBUTE *X509_ATTRIBUTE_create(int nid, int atrtype, void *value); X509_EXTENSION *X509_EXTENSION_new(void); void X509_EXTENSION_free(X509_EXTENSION *a); X509_EXTENSION *d2i_X509_EXTENSION(X509_EXTENSION **a, const unsigned char **in, long len); int i2d_X509_EXTENSION(X509_EXTENSION *a, unsigned char **out); extern const ASN1_ITEM X509_EXTENSION_it; X509_EXTENSIONS *d2i_X509_EXTENSIONS(X509_EXTENSIONS **a, const unsigned char **in, long len); int i2d_X509_EXTENSIONS(X509_EXTENSIONS *a, unsigned char **out); extern const ASN1_ITEM X509_EXTENSIONS_it; X509_NAME_ENTRY *X509_NAME_ENTRY_new(void); void X509_NAME_ENTRY_free(X509_NAME_ENTRY *a); X509_NAME_ENTRY *d2i_X509_NAME_ENTRY(X509_NAME_ENTRY **a, const unsigned char **in, long len); int i2d_X509_NAME_ENTRY(X509_NAME_ENTRY *a, unsigned char **out); extern const ASN1_ITEM X509_NAME_ENTRY_it; X509_NAME *X509_NAME_new(void); void X509_NAME_free(X509_NAME *a); X509_NAME *d2i_X509_NAME(X509_NAME **a, const unsigned char **in, long len); int i2d_X509_NAME(X509_NAME *a, unsigned char **out); extern const ASN1_ITEM X509_NAME_it; int X509_NAME_set(X509_NAME **xn, X509_NAME *name); X509_CINF *X509_CINF_new(void); void X509_CINF_free(X509_CINF *a); X509_CINF *d2i_X509_CINF(X509_CINF **a, const unsigned char **in, long len); int i2d_X509_CINF(X509_CINF *a, unsigned char **out); extern const ASN1_ITEM X509_CINF_it; X509 *X509_new(void); void X509_free(X509 *a); X509 *d2i_X509(X509 **a, const unsigned char **in, long len); int i2d_X509(X509 *a, unsigned char **out); extern const ASN1_ITEM X509_it; X509_CERT_AUX *X509_CERT_AUX_new(void); void X509_CERT_AUX_free(X509_CERT_AUX *a); X509_CERT_AUX *d2i_X509_CERT_AUX(X509_CERT_AUX **a, const unsigned char **in, long len); int i2d_X509_CERT_AUX(X509_CERT_AUX *a, unsigned char **out); extern const ASN1_ITEM X509_CERT_AUX_it; X509_CERT_PAIR *X509_CERT_PAIR_new(void); void X509_CERT_PAIR_free(X509_CERT_PAIR *a); X509_CERT_PAIR *d2i_X509_CERT_PAIR(X509_CERT_PAIR **a, const unsigned char **in, long len); int i2d_X509_CERT_PAIR(X509_CERT_PAIR *a, unsigned char **out); extern const ASN1_ITEM X509_CERT_PAIR_it; int X509_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int X509_set_ex_data(X509 *r, int idx, void *arg); void *X509_get_ex_data(X509 *r, int idx); int i2d_X509_AUX(X509 *a,unsigned char **pp); X509 * d2i_X509_AUX(X509 **a,const unsigned char **pp,long length); int X509_alias_set1(X509 *x, unsigned char *name, int len); int X509_keyid_set1(X509 *x, unsigned char *id, int len); unsigned char * X509_alias_get0(X509 *x, int *len); unsigned char * X509_keyid_get0(X509 *x, int *len); int (*X509_TRUST_set_default(int (*trust)(int , X509 *, int)))(int, X509 *, int); int X509_TRUST_set(int *t, int trust); int X509_add1_trust_object(X509 *x, ASN1_OBJECT *obj); int X509_add1_reject_object(X509 *x, ASN1_OBJECT *obj); void X509_trust_clear(X509 *x); void X509_reject_clear(X509 *x); X509_REVOKED *X509_REVOKED_new(void); void X509_REVOKED_free(X509_REVOKED *a); X509_REVOKED *d2i_X509_REVOKED(X509_REVOKED **a, const unsigned char **in, long len); int i2d_X509_REVOKED(X509_REVOKED *a, unsigned char **out); extern const ASN1_ITEM X509_REVOKED_it; X509_CRL_INFO *X509_CRL_INFO_new(void); void X509_CRL_INFO_free(X509_CRL_INFO *a); X509_CRL_INFO *d2i_X509_CRL_INFO(X509_CRL_INFO **a, const unsigned char **in, long len); int i2d_X509_CRL_INFO(X509_CRL_INFO *a, unsigned char **out); extern const ASN1_ITEM X509_CRL_INFO_it; X509_CRL *X509_CRL_new(void); void X509_CRL_free(X509_CRL *a); X509_CRL *d2i_X509_CRL(X509_CRL **a, const unsigned char **in, long len); int i2d_X509_CRL(X509_CRL *a, unsigned char **out); extern const ASN1_ITEM X509_CRL_it; int X509_CRL_add0_revoked(X509_CRL *crl, X509_REVOKED *rev); int X509_CRL_get0_by_serial(X509_CRL *crl, X509_REVOKED **ret, ASN1_INTEGER *serial); int X509_CRL_get0_by_cert(X509_CRL *crl, X509_REVOKED **ret, X509 *x); X509_PKEY * X509_PKEY_new(void ); void X509_PKEY_free(X509_PKEY *a); int i2d_X509_PKEY(X509_PKEY *a,unsigned char **pp); X509_PKEY * d2i_X509_PKEY(X509_PKEY **a,const unsigned char **pp,long length); NETSCAPE_SPKI *NETSCAPE_SPKI_new(void); void NETSCAPE_SPKI_free(NETSCAPE_SPKI *a); NETSCAPE_SPKI *d2i_NETSCAPE_SPKI(NETSCAPE_SPKI **a, const unsigned char **in, long len); int i2d_NETSCAPE_SPKI(NETSCAPE_SPKI *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_SPKI_it; NETSCAPE_SPKAC *NETSCAPE_SPKAC_new(void); void NETSCAPE_SPKAC_free(NETSCAPE_SPKAC *a); NETSCAPE_SPKAC *d2i_NETSCAPE_SPKAC(NETSCAPE_SPKAC **a, const unsigned char **in, long len); int i2d_NETSCAPE_SPKAC(NETSCAPE_SPKAC *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_SPKAC_it; NETSCAPE_CERT_SEQUENCE *NETSCAPE_CERT_SEQUENCE_new(void); void NETSCAPE_CERT_SEQUENCE_free(NETSCAPE_CERT_SEQUENCE *a); NETSCAPE_CERT_SEQUENCE *d2i_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE **a, const unsigned char **in, long len); int i2d_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_CERT_SEQUENCE_it; X509_INFO * X509_INFO_new(void); void X509_INFO_free(X509_INFO *a); char * X509_NAME_oneline(X509_NAME *a,char *buf,int size); int ASN1_verify(i2d_of_void *i2d, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,char *data,EVP_PKEY *pkey); int ASN1_digest(i2d_of_void *i2d,const EVP_MD *type,char *data, unsigned char *md,unsigned int *len); int ASN1_sign(i2d_of_void *i2d, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, char *data,EVP_PKEY *pkey, const EVP_MD *type); int ASN1_item_digest(const ASN1_ITEM *it,const EVP_MD *type,void *data, unsigned char *md,unsigned int *len); int ASN1_item_verify(const ASN1_ITEM *it, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,void *data,EVP_PKEY *pkey); int ASN1_item_sign(const ASN1_ITEM *it, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, void *data, EVP_PKEY *pkey, const EVP_MD *type); int ASN1_item_sign_ctx(const ASN1_ITEM *it, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, void *asn, EVP_MD_CTX *ctx); int X509_set_version(X509 *x,long version); int X509_set_serialNumber(X509 *x, ASN1_INTEGER *serial); ASN1_INTEGER * X509_get_serialNumber(X509 *x); int X509_set_issuer_name(X509 *x, X509_NAME *name); X509_NAME * X509_get_issuer_name(X509 *a); int X509_set_subject_name(X509 *x, X509_NAME *name); X509_NAME * X509_get_subject_name(X509 *a); int X509_set_notBefore(X509 *x, const ASN1_TIME *tm); int X509_set_notAfter(X509 *x, const ASN1_TIME *tm); int X509_set_pubkey(X509 *x, EVP_PKEY *pkey); EVP_PKEY * X509_get_pubkey(X509 *x); ASN1_BIT_STRING * X509_get0_pubkey_bitstr(const X509 *x); int X509_certificate_type(X509 *x,EVP_PKEY *pubkey ); int X509_REQ_set_version(X509_REQ *x,long version); int X509_REQ_set_subject_name(X509_REQ *req,X509_NAME *name); int X509_REQ_set_pubkey(X509_REQ *x, EVP_PKEY *pkey); EVP_PKEY * X509_REQ_get_pubkey(X509_REQ *req); int X509_REQ_extension_nid(int nid); int * X509_REQ_get_extension_nids(void); void X509_REQ_set_extension_nids(int *nids); struct stack_st_X509_EXTENSION *X509_REQ_get_extensions(X509_REQ *req); int X509_REQ_add_extensions_nid(X509_REQ *req, struct stack_st_X509_EXTENSION *exts, int nid); int X509_REQ_add_extensions(X509_REQ *req, struct stack_st_X509_EXTENSION *exts); int X509_REQ_get_attr_count(const X509_REQ *req); int X509_REQ_get_attr_by_NID(const X509_REQ *req, int nid, int lastpos); int X509_REQ_get_attr_by_OBJ(const X509_REQ *req, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *X509_REQ_get_attr(const X509_REQ *req, int loc); X509_ATTRIBUTE *X509_REQ_delete_attr(X509_REQ *req, int loc); int X509_REQ_add1_attr(X509_REQ *req, X509_ATTRIBUTE *attr); int X509_REQ_add1_attr_by_OBJ(X509_REQ *req, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); int X509_REQ_add1_attr_by_NID(X509_REQ *req, int nid, int type, const unsigned char *bytes, int len); int X509_REQ_add1_attr_by_txt(X509_REQ *req, const char *attrname, int type, const unsigned char *bytes, int len); int X509_CRL_set_version(X509_CRL *x, long version); int X509_CRL_set_issuer_name(X509_CRL *x, X509_NAME *name); int X509_CRL_set_lastUpdate(X509_CRL *x, const ASN1_TIME *tm); int X509_CRL_set_nextUpdate(X509_CRL *x, const ASN1_TIME *tm); int X509_CRL_sort(X509_CRL *crl); int X509_REVOKED_set_serialNumber(X509_REVOKED *x, ASN1_INTEGER *serial); int X509_REVOKED_set_revocationDate(X509_REVOKED *r, ASN1_TIME *tm); int X509_REQ_check_private_key(X509_REQ *x509,EVP_PKEY *pkey); int X509_check_private_key(X509 *x509,EVP_PKEY *pkey); int X509_issuer_and_serial_cmp(const X509 *a, const X509 *b); unsigned long X509_issuer_and_serial_hash(X509 *a); int X509_issuer_name_cmp(const X509 *a, const X509 *b); unsigned long X509_issuer_name_hash(X509 *a); int X509_subject_name_cmp(const X509 *a, const X509 *b); unsigned long X509_subject_name_hash(X509 *x); unsigned long X509_issuer_name_hash_old(X509 *a); unsigned long X509_subject_name_hash_old(X509 *x); int X509_cmp(const X509 *a, const X509 *b); int X509_NAME_cmp(const X509_NAME *a, const X509_NAME *b); unsigned long X509_NAME_hash(X509_NAME *x); unsigned long X509_NAME_hash_old(X509_NAME *x); int X509_CRL_cmp(const X509_CRL *a, const X509_CRL *b); int X509_CRL_match(const X509_CRL *a, const X509_CRL *b); int X509_print_ex_fp(FILE *bp,X509 *x, unsigned long nmflag, unsigned long cflag); int X509_print_fp(FILE *bp,X509 *x); int X509_CRL_print_fp(FILE *bp,X509_CRL *x); int X509_REQ_print_fp(FILE *bp,X509_REQ *req); int X509_NAME_print_ex_fp(FILE *fp, X509_NAME *nm, int indent, unsigned long flags); int X509_NAME_print(BIO *bp, X509_NAME *name, int obase); int X509_NAME_print_ex(BIO *out, X509_NAME *nm, int indent, unsigned long flags); int X509_print_ex(BIO *bp,X509 *x, unsigned long nmflag, unsigned long cflag); int X509_print(BIO *bp,X509 *x); int X509_ocspid_print(BIO *bp,X509 *x); int X509_CERT_AUX_print(BIO *bp,X509_CERT_AUX *x, int indent); int X509_CRL_print(BIO *bp,X509_CRL *x); int X509_REQ_print_ex(BIO *bp, X509_REQ *x, unsigned long nmflag, unsigned long cflag); int X509_REQ_print(BIO *bp,X509_REQ *req); int X509_NAME_entry_count(X509_NAME *name); int X509_NAME_get_text_by_NID(X509_NAME *name, int nid, char *buf,int len); int X509_NAME_get_text_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, char *buf,int len); int X509_NAME_get_index_by_NID(X509_NAME *name,int nid,int lastpos); int X509_NAME_get_index_by_OBJ(X509_NAME *name,ASN1_OBJECT *obj, int lastpos); X509_NAME_ENTRY *X509_NAME_get_entry(X509_NAME *name, int loc); X509_NAME_ENTRY *X509_NAME_delete_entry(X509_NAME *name, int loc); int X509_NAME_add_entry(X509_NAME *name,X509_NAME_ENTRY *ne, int loc, int set); int X509_NAME_add_entry_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, int type, unsigned char *bytes, int len, int loc, int set); int X509_NAME_add_entry_by_NID(X509_NAME *name, int nid, int type, unsigned char *bytes, int len, int loc, int set); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_txt(X509_NAME_ENTRY **ne, const char *field, int type, const unsigned char *bytes, int len); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_NID(X509_NAME_ENTRY **ne, int nid, int type,unsigned char *bytes, int len); int X509_NAME_add_entry_by_txt(X509_NAME *name, const char *field, int type, const unsigned char *bytes, int len, int loc, int set); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_OBJ(X509_NAME_ENTRY **ne, ASN1_OBJECT *obj, int type,const unsigned char *bytes, int len); int X509_NAME_ENTRY_set_object(X509_NAME_ENTRY *ne, ASN1_OBJECT *obj); int X509_NAME_ENTRY_set_data(X509_NAME_ENTRY *ne, int type, const unsigned char *bytes, int len); ASN1_OBJECT * X509_NAME_ENTRY_get_object(X509_NAME_ENTRY *ne); ASN1_STRING * X509_NAME_ENTRY_get_data(X509_NAME_ENTRY *ne); int X509v3_get_ext_count(const struct stack_st_X509_EXTENSION *x); int X509v3_get_ext_by_NID(const struct stack_st_X509_EXTENSION *x, int nid, int lastpos); int X509v3_get_ext_by_OBJ(const struct stack_st_X509_EXTENSION *x, ASN1_OBJECT *obj,int lastpos); int X509v3_get_ext_by_critical(const struct stack_st_X509_EXTENSION *x, int crit, int lastpos); X509_EXTENSION *X509v3_get_ext(const struct stack_st_X509_EXTENSION *x, int loc); X509_EXTENSION *X509v3_delete_ext(struct stack_st_X509_EXTENSION *x, int loc); struct stack_st_X509_EXTENSION *X509v3_add_ext(struct stack_st_X509_EXTENSION **x, X509_EXTENSION *ex, int loc); int X509_get_ext_count(X509 *x); int X509_get_ext_by_NID(X509 *x, int nid, int lastpos); int X509_get_ext_by_OBJ(X509 *x,ASN1_OBJECT *obj,int lastpos); int X509_get_ext_by_critical(X509 *x, int crit, int lastpos); X509_EXTENSION *X509_get_ext(X509 *x, int loc); X509_EXTENSION *X509_delete_ext(X509 *x, int loc); int X509_add_ext(X509 *x, X509_EXTENSION *ex, int loc); void * X509_get_ext_d2i(X509 *x, int nid, int *crit, int *idx); int X509_add1_ext_i2d(X509 *x, int nid, void *value, int crit, unsigned long flags); int X509_CRL_get_ext_count(X509_CRL *x); int X509_CRL_get_ext_by_NID(X509_CRL *x, int nid, int lastpos); int X509_CRL_get_ext_by_OBJ(X509_CRL *x,ASN1_OBJECT *obj,int lastpos); int X509_CRL_get_ext_by_critical(X509_CRL *x, int crit, int lastpos); X509_EXTENSION *X509_CRL_get_ext(X509_CRL *x, int loc); X509_EXTENSION *X509_CRL_delete_ext(X509_CRL *x, int loc); int X509_CRL_add_ext(X509_CRL *x, X509_EXTENSION *ex, int loc); void * X509_CRL_get_ext_d2i(X509_CRL *x, int nid, int *crit, int *idx); int X509_CRL_add1_ext_i2d(X509_CRL *x, int nid, void *value, int crit, unsigned long flags); int X509_REVOKED_get_ext_count(X509_REVOKED *x); int X509_REVOKED_get_ext_by_NID(X509_REVOKED *x, int nid, int lastpos); int X509_REVOKED_get_ext_by_OBJ(X509_REVOKED *x,ASN1_OBJECT *obj,int lastpos); int X509_REVOKED_get_ext_by_critical(X509_REVOKED *x, int crit, int lastpos); X509_EXTENSION *X509_REVOKED_get_ext(X509_REVOKED *x, int loc); X509_EXTENSION *X509_REVOKED_delete_ext(X509_REVOKED *x, int loc); int X509_REVOKED_add_ext(X509_REVOKED *x, X509_EXTENSION *ex, int loc); void * X509_REVOKED_get_ext_d2i(X509_REVOKED *x, int nid, int *crit, int *idx); int X509_REVOKED_add1_ext_i2d(X509_REVOKED *x, int nid, void *value, int crit, unsigned long flags); X509_EXTENSION *X509_EXTENSION_create_by_NID(X509_EXTENSION **ex, int nid, int crit, ASN1_OCTET_STRING *data); X509_EXTENSION *X509_EXTENSION_create_by_OBJ(X509_EXTENSION **ex, ASN1_OBJECT *obj,int crit,ASN1_OCTET_STRING *data); int X509_EXTENSION_set_object(X509_EXTENSION *ex,ASN1_OBJECT *obj); int X509_EXTENSION_set_critical(X509_EXTENSION *ex, int crit); int X509_EXTENSION_set_data(X509_EXTENSION *ex, ASN1_OCTET_STRING *data); ASN1_OBJECT * X509_EXTENSION_get_object(X509_EXTENSION *ex); ASN1_OCTET_STRING *X509_EXTENSION_get_data(X509_EXTENSION *ne); int X509_EXTENSION_get_critical(X509_EXTENSION *ex); int X509at_get_attr_count(const struct stack_st_X509_ATTRIBUTE *x); int X509at_get_attr_by_NID(const struct stack_st_X509_ATTRIBUTE *x, int nid, int lastpos); int X509at_get_attr_by_OBJ(const struct stack_st_X509_ATTRIBUTE *sk, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *X509at_get_attr(const struct stack_st_X509_ATTRIBUTE *x, int loc); X509_ATTRIBUTE *X509at_delete_attr(struct stack_st_X509_ATTRIBUTE *x, int loc); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr(struct stack_st_X509_ATTRIBUTE **x, X509_ATTRIBUTE *attr); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_OBJ(struct stack_st_X509_ATTRIBUTE **x, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_NID(struct stack_st_X509_ATTRIBUTE **x, int nid, int type, const unsigned char *bytes, int len); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_txt(struct stack_st_X509_ATTRIBUTE **x, const char *attrname, int type, const unsigned char *bytes, int len); void *X509at_get0_data_by_OBJ(struct stack_st_X509_ATTRIBUTE *x, ASN1_OBJECT *obj, int lastpos, int type); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_NID(X509_ATTRIBUTE **attr, int nid, int atrtype, const void *data, int len); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_OBJ(X509_ATTRIBUTE **attr, const ASN1_OBJECT *obj, int atrtype, const void *data, int len); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_txt(X509_ATTRIBUTE **attr, const char *atrname, int type, const unsigned char *bytes, int len); int X509_ATTRIBUTE_set1_object(X509_ATTRIBUTE *attr, const ASN1_OBJECT *obj); int X509_ATTRIBUTE_set1_data(X509_ATTRIBUTE *attr, int attrtype, const void *data, int len); void *X509_ATTRIBUTE_get0_data(X509_ATTRIBUTE *attr, int idx, int atrtype, void *data); int X509_ATTRIBUTE_count(X509_ATTRIBUTE *attr); ASN1_OBJECT *X509_ATTRIBUTE_get0_object(X509_ATTRIBUTE *attr); ASN1_TYPE *X509_ATTRIBUTE_get0_type(X509_ATTRIBUTE *attr, int idx); int EVP_PKEY_get_attr_count(const EVP_PKEY *key); int EVP_PKEY_get_attr_by_NID(const EVP_PKEY *key, int nid, int lastpos); int EVP_PKEY_get_attr_by_OBJ(const EVP_PKEY *key, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *EVP_PKEY_get_attr(const EVP_PKEY *key, int loc); X509_ATTRIBUTE *EVP_PKEY_delete_attr(EVP_PKEY *key, int loc); int EVP_PKEY_add1_attr(EVP_PKEY *key, X509_ATTRIBUTE *attr); int EVP_PKEY_add1_attr_by_OBJ(EVP_PKEY *key, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); int EVP_PKEY_add1_attr_by_NID(EVP_PKEY *key, int nid, int type, const unsigned char *bytes, int len); int EVP_PKEY_add1_attr_by_txt(EVP_PKEY *key, const char *attrname, int type, const unsigned char *bytes, int len); int X509_verify_cert(X509_STORE_CTX *ctx); X509 *X509_find_by_issuer_and_serial(struct stack_st_X509 *sk,X509_NAME *name, ASN1_INTEGER *serial); X509 *X509_find_by_subject(struct stack_st_X509 *sk,X509_NAME *name); PBEPARAM *PBEPARAM_new(void); void PBEPARAM_free(PBEPARAM *a); PBEPARAM *d2i_PBEPARAM(PBEPARAM **a, const unsigned char **in, long len); int i2d_PBEPARAM(PBEPARAM *a, unsigned char **out); extern const ASN1_ITEM PBEPARAM_it; PBE2PARAM *PBE2PARAM_new(void); void PBE2PARAM_free(PBE2PARAM *a); PBE2PARAM *d2i_PBE2PARAM(PBE2PARAM **a, const unsigned char **in, long len); int i2d_PBE2PARAM(PBE2PARAM *a, unsigned char **out); extern const ASN1_ITEM PBE2PARAM_it; PBKDF2PARAM *PBKDF2PARAM_new(void); void PBKDF2PARAM_free(PBKDF2PARAM *a); PBKDF2PARAM *d2i_PBKDF2PARAM(PBKDF2PARAM **a, const unsigned char **in, long len); int i2d_PBKDF2PARAM(PBKDF2PARAM *a, unsigned char **out); extern const ASN1_ITEM PBKDF2PARAM_it; int PKCS5_pbe_set0_algor(X509_ALGOR *algor, int alg, int iter, const unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe_set(int alg, int iter, const unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe2_set(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe2_set_iv(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen, unsigned char *aiv, int prf_nid); X509_ALGOR *PKCS5_pbkdf2_set(int iter, unsigned char *salt, int saltlen, int prf_nid, int keylen); PKCS8_PRIV_KEY_INFO *PKCS8_PRIV_KEY_INFO_new(void); void PKCS8_PRIV_KEY_INFO_free(PKCS8_PRIV_KEY_INFO *a); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO **a, const unsigned char **in, long len); int i2d_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS8_PRIV_KEY_INFO_it; EVP_PKEY *EVP_PKCS82PKEY(PKCS8_PRIV_KEY_INFO *p8); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8(EVP_PKEY *pkey); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8_broken(EVP_PKEY *pkey, int broken); PKCS8_PRIV_KEY_INFO *PKCS8_set_broken(PKCS8_PRIV_KEY_INFO *p8, int broken); int PKCS8_pkey_set0(PKCS8_PRIV_KEY_INFO *priv, ASN1_OBJECT *aobj, int version, int ptype, void *pval, unsigned char *penc, int penclen); int PKCS8_pkey_get0(ASN1_OBJECT **ppkalg, const unsigned char **pk, int *ppklen, X509_ALGOR **pa, PKCS8_PRIV_KEY_INFO *p8); int X509_PUBKEY_set0_param(X509_PUBKEY *pub, ASN1_OBJECT *aobj, int ptype, void *pval, unsigned char *penc, int penclen); int X509_PUBKEY_get0_param(ASN1_OBJECT **ppkalg, const unsigned char **pk, int *ppklen, X509_ALGOR **pa, X509_PUBKEY *pub); int X509_check_trust(X509 *x, int id, int flags); int X509_TRUST_get_count(void); X509_TRUST * X509_TRUST_get0(int idx); int X509_TRUST_get_by_id(int id); int X509_TRUST_add(int id, int flags, int (*ck)(X509_TRUST *, X509 *, int), char *name, int arg1, void *arg2); void X509_TRUST_cleanup(void); int X509_TRUST_get_flags(X509_TRUST *xp); char *X509_TRUST_get0_name(X509_TRUST *xp); int X509_TRUST_get_trust(X509_TRUST *xp); void ERR_load_X509_strings(void); # 1296 "/usr/include/openssl/x509.h" 3 4 } # 157 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/pem.h" 1 3 4 # 62 "/usr/include/openssl/pem.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/pem.h" 2 3 4 # 71 "/usr/include/openssl/pem.h" 3 4 # 1 "/usr/include/openssl/pem2.h" 1 3 4 # 61 "/usr/include/openssl/pem2.h" 3 4 extern "C" { } # 72 "/usr/include/openssl/pem.h" 2 3 4 extern "C" { # 142 "/usr/include/openssl/pem.h" 3 4 typedef struct PEM_Encode_Seal_st { EVP_ENCODE_CTX encode; EVP_MD_CTX md; EVP_CIPHER_CTX cipher; } PEM_ENCODE_SEAL_CTX; typedef struct pem_recip_st { char *name; X509_NAME *dn; int cipher; int key_enc; } PEM_USER; typedef struct pem_ctx_st { int type; struct { int version; int mode; } proc_type; char *domain; struct { int cipher; } DEK_info; PEM_USER *originator; int num_recipient; PEM_USER **recipient; EVP_MD *md; int md_enc; int md_len; char *md_data; EVP_CIPHER *dec; int key_len; unsigned char *key; int data_enc; int data_len; unsigned char *data; } PEM_CTX; # 400 "/usr/include/openssl/pem.h" 3 4 typedef int pem_password_cb(char *buf, int size, int rwflag, void *userdata); int PEM_get_EVP_CIPHER_INFO(char *header, EVP_CIPHER_INFO *cipher); int PEM_do_header (EVP_CIPHER_INFO *cipher, unsigned char *data,long *len, pem_password_cb *callback,void *u); int PEM_read_bio(BIO *bp, char **name, char **header, unsigned char **data,long *len); int PEM_write_bio(BIO *bp,const char *name,char *hdr,unsigned char *data, long len); int PEM_bytes_read_bio(unsigned char **pdata, long *plen, char **pnm, const char *name, BIO *bp, pem_password_cb *cb, void *u); void * PEM_ASN1_read_bio(d2i_of_void *d2i, const char *name, BIO *bp, void **x, pem_password_cb *cb, void *u); int PEM_ASN1_write_bio(i2d_of_void *i2d,const char *name,BIO *bp, void *x, const EVP_CIPHER *enc,unsigned char *kstr,int klen, pem_password_cb *cb, void *u); struct stack_st_X509_INFO * PEM_X509_INFO_read_bio(BIO *bp, struct stack_st_X509_INFO *sk, pem_password_cb *cb, void *u); int PEM_X509_INFO_write_bio(BIO *bp,X509_INFO *xi, EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cd, void *u); int PEM_read(FILE *fp, char **name, char **header, unsigned char **data,long *len); int PEM_write(FILE *fp,char *name,char *hdr,unsigned char *data,long len); void * PEM_ASN1_read(d2i_of_void *d2i, const char *name, FILE *fp, void **x, pem_password_cb *cb, void *u); int PEM_ASN1_write(i2d_of_void *i2d,const char *name,FILE *fp, void *x,const EVP_CIPHER *enc,unsigned char *kstr, int klen,pem_password_cb *callback, void *u); struct stack_st_X509_INFO * PEM_X509_INFO_read(FILE *fp, struct stack_st_X509_INFO *sk, pem_password_cb *cb, void *u); int PEM_SealInit(PEM_ENCODE_SEAL_CTX *ctx, EVP_CIPHER *type, EVP_MD *md_type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk); void PEM_SealUpdate(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *out, int *outl, unsigned char *in, int inl); int PEM_SealFinal(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *sig,int *sigl, unsigned char *out, int *outl, EVP_PKEY *priv); void PEM_SignInit(EVP_MD_CTX *ctx, EVP_MD *type); void PEM_SignUpdate(EVP_MD_CTX *ctx,unsigned char *d,unsigned int cnt); int PEM_SignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, unsigned int *siglen, EVP_PKEY *pkey); int PEM_def_callback(char *buf, int num, int w, void *key); void PEM_proc_type(char *buf, int type); void PEM_dek_info(char *buf, const char *type, int len, char *str); X509 *PEM_read_bio_X509(BIO *bp, X509 **x, pem_password_cb *cb, void *u); X509 *PEM_read_X509(FILE *fp, X509 **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509(BIO *bp, X509 *x); int PEM_write_X509(FILE *fp, X509 *x); X509 *PEM_read_bio_X509_AUX(BIO *bp, X509 **x, pem_password_cb *cb, void *u); X509 *PEM_read_X509_AUX(FILE *fp, X509 **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_AUX(BIO *bp, X509 *x); int PEM_write_X509_AUX(FILE *fp, X509 *x); X509_CERT_PAIR *PEM_read_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR **x, pem_password_cb *cb, void *u); X509_CERT_PAIR *PEM_read_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR *x); int PEM_write_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR *x); X509_REQ *PEM_read_bio_X509_REQ(BIO *bp, X509_REQ **x, pem_password_cb *cb, void *u); X509_REQ *PEM_read_X509_REQ(FILE *fp, X509_REQ **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_REQ(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ(FILE *fp, X509_REQ *x); int PEM_write_bio_X509_REQ_NEW(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ_NEW(FILE *fp, X509_REQ *x); X509_CRL *PEM_read_bio_X509_CRL(BIO *bp, X509_CRL **x, pem_password_cb *cb, void *u); X509_CRL *PEM_read_X509_CRL(FILE *fp, X509_CRL **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CRL(BIO *bp, X509_CRL *x); int PEM_write_X509_CRL(FILE *fp, X509_CRL *x); PKCS7 *PEM_read_bio_PKCS7(BIO *bp, PKCS7 **x, pem_password_cb *cb, void *u); PKCS7 *PEM_read_PKCS7(FILE *fp, PKCS7 **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS7(BIO *bp, PKCS7 *x); int PEM_write_PKCS7(FILE *fp, PKCS7 *x); NETSCAPE_CERT_SEQUENCE *PEM_read_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE **x, pem_password_cb *cb, void *u); NETSCAPE_CERT_SEQUENCE *PEM_read_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE **x, pem_password_cb *cb, void *u); int PEM_write_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE *x); int PEM_write_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE *x); X509_SIG *PEM_read_bio_PKCS8(BIO *bp, X509_SIG **x, pem_password_cb *cb, void *u); X509_SIG *PEM_read_PKCS8(FILE *fp, X509_SIG **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8(BIO *bp, X509_SIG *x); int PEM_write_PKCS8(FILE *fp, X509_SIG *x); PKCS8_PRIV_KEY_INFO *PEM_read_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO **x, pem_password_cb *cb, void *u); PKCS8_PRIV_KEY_INFO *PEM_read_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO *x); int PEM_write_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO *x); RSA *PEM_read_bio_RSAPrivateKey(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPrivateKey(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPrivateKey(BIO *bp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_RSAPrivateKey(FILE *fp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); RSA *PEM_read_bio_RSAPublicKey(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPublicKey(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPublicKey(BIO *bp, const RSA *x); int PEM_write_RSAPublicKey(FILE *fp, const RSA *x); RSA *PEM_read_bio_RSA_PUBKEY(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSA_PUBKEY(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSA_PUBKEY(BIO *bp, RSA *x); int PEM_write_RSA_PUBKEY(FILE *fp, RSA *x); DSA *PEM_read_bio_DSAPrivateKey(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAPrivateKey(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAPrivateKey(BIO *bp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_DSAPrivateKey(FILE *fp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); DSA *PEM_read_bio_DSA_PUBKEY(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSA_PUBKEY(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSA_PUBKEY(BIO *bp, DSA *x); int PEM_write_DSA_PUBKEY(FILE *fp, DSA *x); DSA *PEM_read_bio_DSAparams(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAparams(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAparams(BIO *bp, const DSA *x); int PEM_write_DSAparams(FILE *fp, const DSA *x); EC_GROUP *PEM_read_bio_ECPKParameters(BIO *bp, EC_GROUP **x, pem_password_cb *cb, void *u); EC_GROUP *PEM_read_ECPKParameters(FILE *fp, EC_GROUP **x, pem_password_cb *cb, void *u); int PEM_write_bio_ECPKParameters(BIO *bp, const EC_GROUP *x); int PEM_write_ECPKParameters(FILE *fp, const EC_GROUP *x); EC_KEY *PEM_read_bio_ECPrivateKey(BIO *bp, EC_KEY **x, pem_password_cb *cb, void *u); EC_KEY *PEM_read_ECPrivateKey(FILE *fp, EC_KEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_ECPrivateKey(BIO *bp, EC_KEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_ECPrivateKey(FILE *fp, EC_KEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EC_KEY *PEM_read_bio_EC_PUBKEY(BIO *bp, EC_KEY **x, pem_password_cb *cb, void *u); EC_KEY *PEM_read_EC_PUBKEY(FILE *fp, EC_KEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_EC_PUBKEY(BIO *bp, EC_KEY *x); int PEM_write_EC_PUBKEY(FILE *fp, EC_KEY *x); DH *PEM_read_bio_DHparams(BIO *bp, DH **x, pem_password_cb *cb, void *u); DH *PEM_read_DHparams(FILE *fp, DH **x, pem_password_cb *cb, void *u); int PEM_write_bio_DHparams(BIO *bp, const DH *x); int PEM_write_DHparams(FILE *fp, const DH *x); EVP_PKEY *PEM_read_bio_PrivateKey(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PrivateKey(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_PrivateKey(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PrivateKey(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_bio_PUBKEY(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PUBKEY(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_PUBKEY(BIO *bp, EVP_PKEY *x); int PEM_write_PUBKEY(FILE *fp, EVP_PKEY *x); int PEM_write_bio_PKCS8PrivateKey_nid(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8PrivateKey(BIO *, EVP_PKEY *, const EVP_CIPHER *, char *, int, pem_password_cb *, void *); int i2d_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_nid_bio(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *d2i_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_nid_fp(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PKCS8PrivateKey_nid(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *d2i_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_PKCS8PrivateKey(FILE *fp,EVP_PKEY *x,const EVP_CIPHER *enc, char *kstr,int klen, pem_password_cb *cd, void *u); EVP_PKEY *PEM_read_bio_Parameters(BIO *bp, EVP_PKEY **x); int PEM_write_bio_Parameters(BIO *bp, EVP_PKEY *x); EVP_PKEY *b2i_PrivateKey(const unsigned char **in, long length); EVP_PKEY *b2i_PublicKey(const unsigned char **in, long length); EVP_PKEY *b2i_PrivateKey_bio(BIO *in); EVP_PKEY *b2i_PublicKey_bio(BIO *in); int i2b_PrivateKey_bio(BIO *out, EVP_PKEY *pk); int i2b_PublicKey_bio(BIO *out, EVP_PKEY *pk); EVP_PKEY *b2i_PVK_bio(BIO *in, pem_password_cb *cb, void *u); int i2b_PVK_bio(BIO *out, EVP_PKEY *pk, int enclevel, pem_password_cb *cb, void *u); void ERR_load_PEM_strings(void); # 639 "/usr/include/openssl/pem.h" 3 4 } # 163 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/hmac.h" 1 3 4 # 61 "/usr/include/openssl/hmac.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 62 "/usr/include/openssl/hmac.h" 2 3 4 # 72 "/usr/include/openssl/hmac.h" 3 4 extern "C" { typedef struct hmac_ctx_st { const EVP_MD *md; EVP_MD_CTX md_ctx; EVP_MD_CTX i_ctx; EVP_MD_CTX o_ctx; unsigned int key_length; unsigned char key[128]; } HMAC_CTX; void HMAC_CTX_init(HMAC_CTX *ctx); void HMAC_CTX_cleanup(HMAC_CTX *ctx); int HMAC_Init(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md); int HMAC_Init_ex(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md, ENGINE *impl); int HMAC_Update(HMAC_CTX *ctx, const unsigned char *data, size_t len); int HMAC_Final(HMAC_CTX *ctx, unsigned char *md, unsigned int *len); unsigned char *HMAC(const EVP_MD *evp_md, const void *key, int key_len, const unsigned char *d, size_t n, unsigned char *md, unsigned int *md_len); int HMAC_CTX_copy(HMAC_CTX *dctx, HMAC_CTX *sctx); void HMAC_CTX_set_flags(HMAC_CTX *ctx, unsigned long flags); } # 164 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/kssl.h" 1 3 4 # 66 "/usr/include/openssl/kssl.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 34 "/usr/include/openssl/opensslconf.h" 3 4 # 1 "/usr/include/openssl/opensslconf-x86_64.h" 1 3 4 # 12 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 extern "C" { # 284 "/usr/include/openssl/opensslconf-x86_64.h" 3 4 } # 35 "/usr/include/openssl/opensslconf.h" 2 3 4 # 67 "/usr/include/openssl/kssl.h" 2 3 4 # 1 "/usr/include/ctype.h" 1 3 4 # 28 "/usr/include/ctype.h" 3 4 extern "C" { # 46 "/usr/include/ctype.h" 3 4 enum { _ISupper = ((0) < 8 ? ((1 << (0)) << 8) : ((1 << (0)) >> 8)), _ISlower = ((1) < 8 ? ((1 << (1)) << 8) : ((1 << (1)) >> 8)), _ISalpha = ((2) < 8 ? ((1 << (2)) << 8) : ((1 << (2)) >> 8)), _ISdigit = ((3) < 8 ? ((1 << (3)) << 8) : ((1 << (3)) >> 8)), _ISxdigit = ((4) < 8 ? ((1 << (4)) << 8) : ((1 << (4)) >> 8)), _ISspace = ((5) < 8 ? ((1 << (5)) << 8) : ((1 << (5)) >> 8)), _ISprint = ((6) < 8 ? ((1 << (6)) << 8) : ((1 << (6)) >> 8)), _ISgraph = ((7) < 8 ? ((1 << (7)) << 8) : ((1 << (7)) >> 8)), _ISblank = ((8) < 8 ? ((1 << (8)) << 8) : ((1 << (8)) >> 8)), _IScntrl = ((9) < 8 ? ((1 << (9)) << 8) : ((1 << (9)) >> 8)), _ISpunct = ((10) < 8 ? ((1 << (10)) << 8) : ((1 << (10)) >> 8)), _ISalnum = ((11) < 8 ? ((1 << (11)) << 8) : ((1 << (11)) >> 8)) }; # 79 "/usr/include/ctype.h" 3 4 extern const unsigned short int **__ctype_b_loc (void) throw () __attribute__ ((__const__)); extern const __int32_t **__ctype_tolower_loc (void) throw () __attribute__ ((__const__)); extern const __int32_t **__ctype_toupper_loc (void) throw () __attribute__ ((__const__)); # 104 "/usr/include/ctype.h" 3 4 extern int isalnum (int) throw (); extern int isalpha (int) throw (); extern int iscntrl (int) throw (); extern int isdigit (int) throw (); extern int islower (int) throw (); extern int isgraph (int) throw (); extern int isprint (int) throw (); extern int ispunct (int) throw (); extern int isspace (int) throw (); extern int isupper (int) throw (); extern int isxdigit (int) throw (); extern int tolower (int __c) throw (); extern int toupper (int __c) throw (); extern int isblank (int) throw (); extern int isctype (int __c, int __mask) throw (); extern int isascii (int __c) throw (); extern int toascii (int __c) throw (); extern int _toupper (int) throw (); extern int _tolower (int) throw (); # 271 "/usr/include/ctype.h" 3 4 extern int isalnum_l (int, __locale_t) throw (); extern int isalpha_l (int, __locale_t) throw (); extern int iscntrl_l (int, __locale_t) throw (); extern int isdigit_l (int, __locale_t) throw (); extern int islower_l (int, __locale_t) throw (); extern int isgraph_l (int, __locale_t) throw (); extern int isprint_l (int, __locale_t) throw (); extern int ispunct_l (int, __locale_t) throw (); extern int isspace_l (int, __locale_t) throw (); extern int isupper_l (int, __locale_t) throw (); extern int isxdigit_l (int, __locale_t) throw (); extern int isblank_l (int, __locale_t) throw (); extern int __tolower_l (int __c, __locale_t __l) throw (); extern int tolower_l (int __c, __locale_t __l) throw (); extern int __toupper_l (int __c, __locale_t __l) throw (); extern int toupper_l (int __c, __locale_t __l) throw (); # 347 "/usr/include/ctype.h" 3 4 } # 72 "/usr/include/openssl/kssl.h" 2 3 4 # 1 "/usr/include/krb5.h" 1 3 4 # 1 "/usr/include/krb5/krb5.h" 1 3 4 # 102 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 143 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 38 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 2 3 4 # 161 "/usr/include/bits/posix1_lim.h" 2 3 4 # 144 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 148 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/xopen_lim.h" 1 3 4 # 33 "/usr/include/bits/xopen_lim.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 34 "/usr/include/bits/xopen_lim.h" 2 3 4 # 152 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 2 3 4 # 103 "/usr/include/krb5/krb5.h" 2 3 4 # 115 "/usr/include/krb5/krb5.h" 3 4 extern "C" { # 130 "/usr/include/krb5/krb5.h" 3 4 struct _profile_t; # 141 "/usr/include/krb5/krb5.h" 3 4 typedef unsigned char krb5_octet; typedef short krb5_int16; typedef unsigned short krb5_ui_2; typedef int krb5_int32; typedef unsigned int krb5_ui_4; # 198 "/usr/include/krb5/krb5.h" 3 4 typedef unsigned int krb5_boolean; typedef unsigned int krb5_msgtype; typedef unsigned int krb5_kvno; typedef krb5_int32 krb5_addrtype; typedef krb5_int32 krb5_enctype; typedef krb5_int32 krb5_cksumtype; typedef krb5_int32 krb5_authdatatype; typedef krb5_int32 krb5_keyusage; typedef krb5_int32 krb5_cryptotype; typedef krb5_int32 krb5_preauthtype; typedef krb5_int32 krb5_flags; typedef krb5_int32 krb5_timestamp; typedef krb5_int32 krb5_error_code; typedef krb5_int32 krb5_deltat; typedef krb5_error_code krb5_magic; typedef struct _krb5_data { krb5_magic magic; unsigned int length; char *data; } krb5_data; typedef struct _krb5_octet_data { krb5_magic magic; unsigned int length; krb5_octet *data; } krb5_octet_data; typedef void * krb5_pointer; typedef void const * krb5_const_pointer; typedef struct krb5_principal_data { krb5_magic magic; krb5_data realm; krb5_data *data; krb5_int32 length; krb5_int32 type; } krb5_principal_data; typedef krb5_principal_data * krb5_principal; # 270 "/usr/include/krb5/krb5.h" 3 4 typedef const krb5_principal_data *krb5_const_principal; # 298 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_is_referral_realm(const krb5_data *r); # 308 "/usr/include/krb5/krb5.h" 3 4 const krb5_data * krb5_anonymous_realm(void); # 318 "/usr/include/krb5/krb5.h" 3 4 krb5_const_principal krb5_anonymous_principal(void); # 332 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_address { krb5_magic magic; krb5_addrtype addrtype; unsigned int length; krb5_octet *contents; } krb5_address; # 359 "/usr/include/krb5/krb5.h" 3 4 struct _krb5_context; typedef struct _krb5_context * krb5_context; struct _krb5_auth_context; typedef struct _krb5_auth_context * krb5_auth_context; struct _krb5_cryptosystem_entry; typedef struct _krb5_keyblock { krb5_magic magic; krb5_enctype enctype; unsigned int length; krb5_octet *contents; } krb5_keyblock; struct krb5_key_st; # 388 "/usr/include/krb5/krb5.h" 3 4 typedef struct krb5_key_st *krb5_key; typedef struct _krb5_encrypt_block { krb5_magic magic; krb5_enctype crypto_entry; krb5_keyblock *key; } krb5_encrypt_block; typedef struct _krb5_checksum { krb5_magic magic; krb5_cksumtype checksum_type; unsigned int length; krb5_octet *contents; } krb5_checksum; typedef struct _krb5_enc_data { krb5_magic magic; krb5_enctype enctype; krb5_kvno kvno; krb5_data ciphertext; } krb5_enc_data; # 424 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_crypto_iov { krb5_cryptotype flags; krb5_data data; } krb5_crypto_iov; # 484 "/usr/include/krb5/krb5.h" 3 4 enum { KRB5_C_RANDSOURCE_OLDAPI = 0, KRB5_C_RANDSOURCE_OSRAND = 1, KRB5_C_RANDSOURCE_TRUSTEDPARTY = 2, KRB5_C_RANDSOURCE_TIMING = 3, KRB5_C_RANDSOURCE_EXTERNAL_PROTOCOL = 4, KRB5_C_RANDSOURCE_MAX = 5 }; # 536 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_encrypt(krb5_context context, const krb5_keyblock *key, krb5_keyusage usage, const krb5_data *cipher_state, const krb5_data *input, krb5_enc_data *output); # 565 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_decrypt(krb5_context context, const krb5_keyblock *key, krb5_keyusage usage, const krb5_data *cipher_state, const krb5_enc_data *input, krb5_data *output); # 583 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_encrypt_length(krb5_context context, krb5_enctype enctype, size_t inputlen, size_t *length); # 596 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_block_size(krb5_context context, krb5_enctype enctype, size_t *blocksize); # 610 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_keylengths(krb5_context context, krb5_enctype enctype, size_t *keybytes, size_t *keylength); # 624 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_init_state(krb5_context context, const krb5_keyblock *key, krb5_keyusage usage, krb5_data *new_state); # 637 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_free_state(krb5_context context, const krb5_keyblock *key, krb5_data *state); # 656 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_prf(krb5_context context, const krb5_keyblock *keyblock, krb5_data *input, krb5_data *output); # 669 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_prf_length(krb5_context context, krb5_enctype enctype, size_t *len); # 690 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_fx_cf2_simple(krb5_context context, krb5_keyblock *k1, const char *pepper1, krb5_keyblock *k2, const char *pepper2, krb5_keyblock **out); # 708 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_make_random_key(krb5_context context, krb5_enctype enctype, krb5_keyblock *k5_random_key); # 730 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_random_to_key(krb5_context context, krb5_enctype enctype, krb5_data *random_data, krb5_keyblock *k5_random_key); # 747 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_random_add_entropy(krb5_context context, unsigned int randsource, const krb5_data *data); # 763 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_random_make_octets(krb5_context context, krb5_data *data); # 780 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_random_os_entropy(krb5_context context, int strong, int *success); krb5_error_code krb5_c_random_seed(krb5_context context, krb5_data *data); # 802 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_string_to_key(krb5_context context, krb5_enctype enctype, const krb5_data *string, const krb5_data *salt, krb5_keyblock *key); # 824 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_string_to_key_with_params(krb5_context context, krb5_enctype enctype, const krb5_data *string, const krb5_data *salt, const krb5_data *params, krb5_keyblock *key); # 845 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_enctype_compare(krb5_context context, krb5_enctype e1, krb5_enctype e2, krb5_boolean *similar); # 874 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_make_checksum(krb5_context context, krb5_cksumtype cksumtype, const krb5_keyblock *key, krb5_keyusage usage, const krb5_data *input, krb5_checksum *cksum); # 900 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_verify_checksum(krb5_context context, const krb5_keyblock *key, krb5_keyusage usage, const krb5_data *data, const krb5_checksum *cksum, krb5_boolean *valid); # 914 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_checksum_length(krb5_context context, krb5_cksumtype cksumtype, size_t *length); # 931 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_keyed_checksum_types(krb5_context context, krb5_enctype enctype, unsigned int *count, krb5_cksumtype **cksumtypes); # 1003 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_c_valid_enctype(krb5_enctype ktype); # 1013 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_c_valid_cksumtype(krb5_cksumtype ctype); # 1024 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_c_is_coll_proof_cksum(krb5_cksumtype ctype); # 1034 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_c_is_keyed_cksum(krb5_cksumtype ctype); # 1074 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_make_checksum_iov(krb5_context context, krb5_cksumtype cksumtype, const krb5_keyblock *key, krb5_keyusage usage, krb5_crypto_iov *data, size_t num_data); # 1101 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_verify_checksum_iov(krb5_context context, krb5_cksumtype cksumtype, const krb5_keyblock *key, krb5_keyusage usage, const krb5_crypto_iov *data, size_t num_data, krb5_boolean *valid); # 1137 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_encrypt_iov(krb5_context context, const krb5_keyblock *keyblock, krb5_keyusage usage, const krb5_data *cipher_state, krb5_crypto_iov *data, size_t num_data); # 1172 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_decrypt_iov(krb5_context context, const krb5_keyblock *keyblock, krb5_keyusage usage, const krb5_data *cipher_state, krb5_crypto_iov *data, size_t num_data); # 1187 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_crypto_length(krb5_context context, krb5_enctype enctype, krb5_cryptotype type, unsigned int *size); # 1206 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_crypto_length_iov(krb5_context context, krb5_enctype enctype, krb5_crypto_iov *data, size_t num_data); # 1223 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_c_padding_length(krb5_context context, krb5_enctype enctype, size_t data_length, unsigned int *size); # 1239 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_create_key(krb5_context context, const krb5_keyblock *key_data, krb5_key *out); void krb5_k_reference_key(krb5_context context, krb5_key key); void krb5_k_free_key(krb5_context context, krb5_key key); krb5_error_code krb5_k_key_keyblock(krb5_context context, krb5_key key, krb5_keyblock **key_data); krb5_enctype krb5_k_key_enctype(krb5_context context, krb5_key key); # 1283 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_encrypt(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *cipher_state, const krb5_data *input, krb5_enc_data *output); # 1318 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_encrypt_iov(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *cipher_state, krb5_crypto_iov *data, size_t num_data); # 1347 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_decrypt(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *cipher_state, const krb5_enc_data *input, krb5_data *output); # 1382 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_decrypt_iov(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *cipher_state, krb5_crypto_iov *data, size_t num_data); # 1411 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_make_checksum(krb5_context context, krb5_cksumtype cksumtype, krb5_key key, krb5_keyusage usage, const krb5_data *input, krb5_checksum *cksum); # 1437 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_make_checksum_iov(krb5_context context, krb5_cksumtype cksumtype, krb5_key key, krb5_keyusage usage, krb5_crypto_iov *data, size_t num_data); # 1463 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_verify_checksum(krb5_context context, krb5_key key, krb5_keyusage usage, const krb5_data *data, const krb5_checksum *cksum, krb5_boolean *valid); # 1490 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_verify_checksum_iov(krb5_context context, krb5_cksumtype cksumtype, krb5_key key, krb5_keyusage usage, const krb5_crypto_iov *data, size_t num_data, krb5_boolean *valid); # 1514 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_k_prf(krb5_context context, krb5_key key, krb5_data *input, krb5_data *output); krb5_error_code krb5_encrypt(krb5_context context, krb5_const_pointer inptr, krb5_pointer outptr, size_t size, krb5_encrypt_block *eblock, krb5_pointer ivec); krb5_error_code krb5_decrypt(krb5_context context, krb5_const_pointer inptr, krb5_pointer outptr, size_t size, krb5_encrypt_block *eblock, krb5_pointer ivec); krb5_error_code krb5_process_key(krb5_context context, krb5_encrypt_block *eblock, const krb5_keyblock * key); krb5_error_code krb5_finish_key(krb5_context context, krb5_encrypt_block * eblock); krb5_error_code krb5_string_to_key(krb5_context context, const krb5_encrypt_block *eblock, krb5_keyblock * keyblock, const krb5_data *data, const krb5_data *salt); krb5_error_code krb5_init_random_key(krb5_context context, const krb5_encrypt_block *eblock, const krb5_keyblock *keyblock, krb5_pointer *ptr); krb5_error_code krb5_finish_random_key(krb5_context context, const krb5_encrypt_block *eblock, krb5_pointer *ptr); krb5_error_code krb5_random_key(krb5_context context, const krb5_encrypt_block *eblock, krb5_pointer ptr, krb5_keyblock **keyblock); krb5_enctype krb5_eblock_enctype(krb5_context context, const krb5_encrypt_block *eblock); krb5_error_code krb5_use_enctype(krb5_context context, krb5_encrypt_block *eblock, krb5_enctype enctype); size_t krb5_encrypt_size(size_t length, krb5_enctype crypto); size_t krb5_checksum_size(krb5_context context, krb5_cksumtype ctype); krb5_error_code krb5_calculate_checksum(krb5_context context, krb5_cksumtype ctype, krb5_const_pointer in, size_t in_length, krb5_const_pointer seed, size_t seed_length, krb5_checksum * outcksum); krb5_error_code krb5_verify_checksum(krb5_context context, krb5_cksumtype ctype, const krb5_checksum * cksum, krb5_const_pointer in, size_t in_length, krb5_const_pointer seed, size_t seed_length); # 1883 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_ticket_times { krb5_timestamp authtime; krb5_timestamp starttime; krb5_timestamp endtime; krb5_timestamp renew_till; } krb5_ticket_times; typedef struct _krb5_authdata { krb5_magic magic; krb5_authdatatype ad_type; unsigned int length; krb5_octet *contents; } krb5_authdata; typedef struct _krb5_transited { krb5_magic magic; krb5_octet tr_type; krb5_data tr_contents; } krb5_transited; typedef struct _krb5_enc_tkt_part { krb5_magic magic; krb5_flags flags; krb5_keyblock *session; krb5_principal client; krb5_transited transited; krb5_ticket_times times; krb5_address **caddrs; krb5_authdata **authorization_data; } krb5_enc_tkt_part; typedef struct _krb5_ticket { krb5_magic magic; krb5_principal server; krb5_enc_data enc_part; krb5_enc_tkt_part *enc_part2; } krb5_ticket; typedef struct _krb5_authenticator { krb5_magic magic; krb5_principal client; krb5_checksum *checksum; krb5_int32 cusec; krb5_timestamp ctime; krb5_keyblock *subkey; krb5_ui_4 seq_number; krb5_authdata **authorization_data; } krb5_authenticator; typedef struct _krb5_tkt_authent { krb5_magic magic; krb5_ticket *ticket; krb5_authenticator *authenticator; krb5_flags ap_options; } krb5_tkt_authent; typedef struct _krb5_creds { krb5_magic magic; krb5_principal client; krb5_principal server; krb5_keyblock keyblock; krb5_ticket_times times; krb5_boolean is_skey; krb5_flags ticket_flags; krb5_address **addresses; krb5_data ticket; krb5_data second_ticket; krb5_authdata **authdata; } krb5_creds; typedef struct _krb5_last_req_entry { krb5_magic magic; krb5_int32 lr_type; krb5_timestamp value; } krb5_last_req_entry; typedef struct _krb5_pa_data { krb5_magic magic; krb5_preauthtype pa_type; unsigned int length; krb5_octet *contents; } krb5_pa_data; typedef struct _krb5_typed_data { krb5_magic magic; krb5_int32 type; unsigned int length; krb5_octet *data; } krb5_typed_data; typedef struct _krb5_kdc_req { krb5_magic magic; krb5_msgtype msg_type; krb5_pa_data **padata; krb5_flags kdc_options; krb5_principal client; krb5_principal server; krb5_timestamp from; krb5_timestamp till; krb5_timestamp rtime; krb5_int32 nonce; int nktypes; krb5_enctype *ktype; krb5_address **addresses; krb5_enc_data authorization_data; krb5_authdata **unenc_authdata; krb5_ticket **second_ticket; } krb5_kdc_req; typedef struct _krb5_enc_kdc_rep_part { krb5_magic magic; krb5_msgtype msg_type; krb5_keyblock *session; krb5_last_req_entry **last_req; krb5_int32 nonce; krb5_timestamp key_exp; krb5_flags flags; krb5_ticket_times times; krb5_principal server; krb5_address **caddrs; krb5_pa_data **enc_padata; } krb5_enc_kdc_rep_part; typedef struct _krb5_kdc_rep { krb5_magic magic; krb5_msgtype msg_type; krb5_pa_data **padata; krb5_principal client; krb5_ticket *ticket; krb5_enc_data enc_part; krb5_enc_kdc_rep_part *enc_part2; } krb5_kdc_rep; typedef struct _krb5_error { krb5_magic magic; krb5_timestamp ctime; krb5_int32 cusec; krb5_int32 susec; krb5_timestamp stime; krb5_ui_4 error; krb5_principal client; krb5_principal server; krb5_data text; krb5_data e_data; } krb5_error; typedef struct _krb5_ap_req { krb5_magic magic; krb5_flags ap_options; krb5_ticket *ticket; krb5_enc_data authenticator; } krb5_ap_req; typedef struct _krb5_ap_rep { krb5_magic magic; krb5_enc_data enc_part; } krb5_ap_rep; typedef struct _krb5_ap_rep_enc_part { krb5_magic magic; krb5_timestamp ctime; krb5_int32 cusec; krb5_keyblock *subkey; krb5_ui_4 seq_number; } krb5_ap_rep_enc_part; typedef struct _krb5_response { krb5_magic magic; krb5_octet message_type; krb5_data response; krb5_int32 expected_nonce; krb5_timestamp request_time; } krb5_response; typedef struct _krb5_cred_info { krb5_magic magic; krb5_keyblock *session; krb5_principal client; krb5_principal server; krb5_flags flags; krb5_ticket_times times; krb5_address **caddrs; } krb5_cred_info; typedef struct _krb5_cred_enc_part { krb5_magic magic; krb5_int32 nonce; krb5_timestamp timestamp; krb5_int32 usec; krb5_address *s_address; krb5_address *r_address; krb5_cred_info **ticket_info; } krb5_cred_enc_part; typedef struct _krb5_cred { krb5_magic magic; krb5_ticket **tickets; krb5_enc_data enc_part; krb5_cred_enc_part *enc_part2; } krb5_cred; typedef struct _passwd_phrase_element { krb5_magic magic; krb5_data *passwd; krb5_data *phrase; } passwd_phrase_element; typedef struct _krb5_pwd_data { krb5_magic magic; int sequence_count; passwd_phrase_element **element; } krb5_pwd_data; typedef struct _krb5_pa_svr_referral_data { krb5_principal principal; } krb5_pa_svr_referral_data; typedef struct _krb5_pa_server_referral_data { krb5_data *referred_realm; krb5_principal true_principal_name; krb5_principal requested_principal_name; krb5_timestamp referral_valid_until; krb5_checksum rep_cksum; } krb5_pa_server_referral_data; typedef struct _krb5_pa_pac_req { krb5_boolean include_pac; } krb5_pa_pac_req; # 2193 "/usr/include/krb5/krb5.h" 3 4 typedef struct krb5_replay_data { krb5_timestamp timestamp; krb5_int32 usec; krb5_ui_4 seq; } krb5_replay_data; # 2211 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_error_code ( * krb5_mk_req_checksum_func)(krb5_context, krb5_auth_context, void *, krb5_data **); # 2225 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_pointer krb5_cc_cursor; struct _krb5_ccache; typedef struct _krb5_ccache *krb5_ccache; struct _krb5_cc_ops; typedef struct _krb5_cc_ops krb5_cc_ops; struct _krb5_cccol_cursor; typedef struct _krb5_cccol_cursor *krb5_cccol_cursor; # 2277 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_cc_get_name(krb5_context context, krb5_ccache cache); # 2291 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_get_full_name(krb5_context context, krb5_ccache cache, char **fullname_out); # 2315 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_initialize(krb5_context context, krb5_ccache cache, krb5_principal principal); # 2333 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_destroy(krb5_context context, krb5_ccache cache); # 2350 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_close(krb5_context context, krb5_ccache cache); # 2368 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_store_cred(krb5_context context, krb5_ccache cache, krb5_creds *creds); # 2404 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_retrieve_cred(krb5_context context, krb5_ccache cache, krb5_flags flags, krb5_creds *mcreds, krb5_creds *creds); # 2426 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_get_principal(krb5_context context, krb5_ccache cache, krb5_principal *principal); # 2444 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_start_seq_get(krb5_context context, krb5_ccache cache, krb5_cc_cursor *cursor); # 2465 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_next_cred(krb5_context context, krb5_ccache cache, krb5_cc_cursor *cursor, krb5_creds *creds); # 2483 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_end_seq_get(krb5_context context, krb5_ccache cache, krb5_cc_cursor *cursor); # 2502 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_remove_cred(krb5_context context, krb5_ccache cache, krb5_flags flags, krb5_creds *creds); # 2517 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_set_flags(krb5_context context, krb5_ccache cache, krb5_flags flags); # 2531 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_get_flags(krb5_context context, krb5_ccache cache, krb5_flags *flags); # 2543 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_cc_get_type(krb5_context context, krb5_ccache cache); # 2561 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_move(krb5_context context, krb5_ccache src, krb5_ccache dst); # 2573 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_last_change_time(krb5_context context, krb5_ccache ccache, krb5_timestamp *change_time); # 2587 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_lock(krb5_context context, krb5_ccache ccache); # 2600 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_unlock(krb5_context context, krb5_ccache ccache); # 2619 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_cursor_new(krb5_context context, krb5_cccol_cursor *cursor); # 2638 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_cursor_next(krb5_context context, krb5_cccol_cursor cursor, krb5_ccache *ccache); # 2652 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_cursor_free(krb5_context context, krb5_cccol_cursor *cursor); # 2665 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_have_content(krb5_context context); # 2682 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_last_change_time(krb5_context context, krb5_timestamp *change_time); # 2699 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_lock(krb5_context context); # 2711 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cccol_unlock(krb5_context context); # 2727 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_new_unique(krb5_context context, const char *type, const char *hint, krb5_ccache *id); # 2739 "/usr/include/krb5/krb5.h" 3 4 struct krb5_rc_st; typedef struct krb5_rc_st *krb5_rcache; # 2754 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_pointer krb5_kt_cursor; typedef struct krb5_keytab_entry_st { krb5_magic magic; krb5_principal principal; krb5_timestamp timestamp; krb5_kvno vno; krb5_keyblock key; } krb5_keytab_entry; struct _krb5_kt; typedef struct _krb5_kt *krb5_keytab; # 2777 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_kt_get_type(krb5_context context, krb5_keytab keytab); # 2800 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_get_name(krb5_context context, krb5_keytab keytab, char *name, unsigned int namelen); # 2812 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_close(krb5_context context, krb5_keytab keytab); # 2841 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_get_entry(krb5_context context, krb5_keytab keytab, krb5_const_principal principal, krb5_kvno vno, krb5_enctype enctype, krb5_keytab_entry *entry); # 2863 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_start_seq_get(krb5_context context, krb5_keytab keytab, krb5_kt_cursor *cursor); # 2886 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_next_entry(krb5_context context, krb5_keytab keytab, krb5_keytab_entry *entry, krb5_kt_cursor *cursor); # 2905 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_end_seq_get(krb5_context context, krb5_keytab keytab, krb5_kt_cursor *cursor); # 2920 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_have_content(krb5_context context, krb5_keytab keytab); # 2951 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_context(krb5_context *context); # 2970 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_secure_context(krb5_context *context); # 2989 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_context_profile(struct _profile_t *profile, krb5_flags flags, krb5_context *context); # 3001 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_context(krb5_context context); # 3018 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_context(krb5_context ctx, krb5_context *nctx_out); # 3039 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_default_tgs_enctypes(krb5_context context, const krb5_enctype *etypes); # 3056 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_permitted_enctypes(krb5_context context, krb5_enctype **ktypes); krb5_boolean krb5_is_thread_safe(void); # 3082 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_server_decrypt_ticket_keytab(krb5_context context, const krb5_keytab kt, krb5_ticket *ticket); # 3094 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_tgt_creds(krb5_context context, krb5_creds **tgts); # 3148 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_credentials(krb5_context context, krb5_flags options, krb5_ccache ccache, krb5_creds *in_creds, krb5_creds **out_creds); krb5_error_code krb5_get_credentials_validate(krb5_context context, krb5_flags options, krb5_ccache ccache, krb5_creds *in_creds, krb5_creds **out_creds); krb5_error_code krb5_get_credentials_renew(krb5_context context, krb5_flags options, krb5_ccache ccache, krb5_creds *in_creds, krb5_creds **out_creds); # 3187 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_req(krb5_context context, krb5_auth_context *auth_context, krb5_flags ap_req_options, char *service, char *hostname, krb5_data *in_data, krb5_ccache ccache, krb5_data *outbuf); # 3229 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_req_extended(krb5_context context, krb5_auth_context *auth_context, krb5_flags ap_req_options, krb5_data *in_data, krb5_creds *in_creds, krb5_data *outbuf); # 3254 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_rep(krb5_context context, krb5_auth_context auth_context, krb5_data *outbuf); # 3268 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_rep_dce(krb5_context context, krb5_auth_context auth_context, krb5_data *outbuf); # 3287 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_rep(krb5_context context, krb5_auth_context auth_context, const krb5_data *inbuf, krb5_ap_rep_enc_part **repl); # 3304 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_rep_dce(krb5_context context, krb5_auth_context auth_context, const krb5_data *inbuf, krb5_ui_4 *nonce); # 3320 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_error(krb5_context context, const krb5_error *dec_err, krb5_data *enc_err); # 3337 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_error(krb5_context context, const krb5_data *enc_errbuf, krb5_error **dec_error); # 3377 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_safe(krb5_context context, krb5_auth_context auth_context, const krb5_data *inbuf, krb5_data *outbuf, krb5_replay_data *outdata); # 3417 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_priv(krb5_context context, krb5_auth_context auth_context, const krb5_data *inbuf, krb5_data *outbuf, krb5_replay_data *outdata); # 3454 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_parse_name(krb5_context context, const char *name, krb5_principal *principal_out); # 3495 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_parse_name_flags(krb5_context context, const char *name, int flags, krb5_principal *principal_out); # 3516 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_unparse_name(krb5_context context, krb5_const_principal principal, register char **name); # 3543 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_unparse_name_ext(krb5_context context, krb5_const_principal principal, char **name, unsigned int *size); # 3574 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_unparse_name_flags(krb5_context context, krb5_const_principal principal, int flags, char **name); # 3594 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_unparse_name_flags_ext(krb5_context context, krb5_const_principal principal, int flags, char **name, unsigned int *size); # 3613 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_principal_realm(krb5_context context, krb5_principal principal, const char *realm); # 3631 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_address_search(krb5_context context, const krb5_address *addr, krb5_address *const *addrlist); # 3645 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_address_compare(krb5_context context, const krb5_address *addr1, const krb5_address *addr2); # 3663 "/usr/include/krb5/krb5.h" 3 4 int krb5_address_order(krb5_context context, const krb5_address *addr1, const krb5_address *addr2); # 3677 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_realm_compare(krb5_context context, krb5_const_principal princ1, krb5_const_principal princ2); # 3691 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_principal_compare(krb5_context context, krb5_const_principal princ1, krb5_const_principal princ2); # 3709 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_principal_compare_any_realm(krb5_context context, krb5_const_principal princ1, krb5_const_principal princ2); # 3738 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_principal_compare_flags(krb5_context context, krb5_const_principal princ1, krb5_const_principal princ2, int flags); # 3761 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_keyblock(krb5_context context, krb5_enctype enctype, size_t length, krb5_keyblock **out); # 3777 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_keyblock(krb5_context context, const krb5_keyblock *from, krb5_keyblock **to); # 3793 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_keyblock_contents(krb5_context context, const krb5_keyblock *from, krb5_keyblock *to); # 3809 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_creds(krb5_context context, const krb5_creds *incred, krb5_creds **outcred); # 3824 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_data(krb5_context context, const krb5_data *indata, krb5_data **outdata); # 3840 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_principal(krb5_context context, krb5_const_principal inprinc, krb5_principal *outprinc); # 3856 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_addresses(krb5_context context, krb5_address *const *inaddr, krb5_address ***outaddr); # 3872 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_ticket(krb5_context context, const krb5_ticket *from, krb5_ticket **pto); # 3890 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_authdata(krb5_context context, krb5_authdata *const *in_authdat, krb5_authdata ***out); # 3912 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_find_authdata(krb5_context context, krb5_authdata *const *ticket_authdata, krb5_authdata *const *ap_req_authdata, krb5_authdatatype ad_type, krb5_authdata ***results); # 3934 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_merge_authdata(krb5_context context, krb5_authdata *const *inauthdat1, krb5_authdata * const *inauthdat2, krb5_authdata ***outauthdat); # 3953 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_authenticator(krb5_context context, const krb5_authenticator *authfrom, krb5_authenticator **authto); # 3970 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_copy_checksum(krb5_context context, const krb5_checksum *ckfrom, krb5_checksum **ckto); # 3988 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_server_rcache(krb5_context context, const krb5_data *piece, krb5_rcache *rcptr); # 4021 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_build_principal_ext(krb5_context context, krb5_principal * princ, unsigned int rlen, const char * realm, ...); # 4051 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_build_principal(krb5_context context, krb5_principal * princ, unsigned int rlen, const char * realm, ...) __attribute__ ((sentinel)) ; # 4098 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_build_principal_alloc_va(krb5_context context, krb5_principal *princ, unsigned int rlen, const char *realm, va_list ap); # 4121 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_425_conv_principal(krb5_context context, const char *name, const char *instance, const char *realm, krb5_principal *princ); # 4147 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_524_conv_principal(krb5_context context, krb5_const_principal princ, char *name, char *inst, char *realm); struct credentials; # 4162 "/usr/include/krb5/krb5.h" 3 4 int krb5_524_convert_creds(krb5_context context, krb5_creds *v5creds, struct credentials *v4creds); # 4198 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_resolve(krb5_context context, const char *name, krb5_keytab *ktid); # 4213 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_dup(krb5_context context, krb5_keytab in, krb5_keytab *out); # 4234 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_default_name(krb5_context context, char *name, int name_size); # 4251 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_default(krb5_context context, krb5_keytab *id); # 4269 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_client_default(krb5_context context, krb5_keytab *keytab_out); # 4282 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_free_keytab_entry_contents(krb5_context context, krb5_keytab_entry *entry); krb5_error_code krb5_kt_free_entry(krb5_context context, krb5_keytab_entry *entry); # 4307 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_remove_entry(krb5_context context, krb5_keytab id, krb5_keytab_entry *entry); # 4326 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_add_entry(krb5_context context, krb5_keytab id, krb5_keytab_entry *entry); # 4338 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_principal2salt(krb5_context context, register krb5_const_principal pr, krb5_data *ret); # 4366 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_resolve(krb5_context context, const char *name, krb5_ccache *cache); # 4379 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_dup(krb5_context context, krb5_ccache in, krb5_ccache *out); # 4405 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_cc_default_name(krb5_context context); # 4428 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_set_default_name(krb5_context context, const char *name); # 4450 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_default(krb5_context context, krb5_ccache *ccache); # 4462 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_copy_creds(krb5_context context, krb5_ccache incc, krb5_ccache outcc); # 4482 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_get_config(krb5_context context, krb5_ccache id, krb5_const_principal principal, const char *key, krb5_data *data); # 4506 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_set_config(krb5_context context, krb5_ccache id, krb5_const_principal principal, const char *key, krb5_data *data); # 4521 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_is_config_principal(krb5_context context, krb5_const_principal principal); # 4538 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_switch(krb5_context context, krb5_ccache cache); # 4552 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_cc_support_switch(krb5_context context, const char *type); # 4572 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_cache_match(krb5_context context, krb5_principal client, krb5_ccache *cache_out); # 4610 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cc_select(krb5_context context, krb5_principal server, krb5_ccache *cache_out, krb5_principal *princ_out); # 4621 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_principal(krb5_context context, krb5_principal val); # 4632 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_authenticator(krb5_context context, krb5_authenticator *val); # 4645 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_addresses(krb5_context context, krb5_address **val); # 4658 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_authdata(krb5_context context, krb5_authdata **val); # 4669 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_ticket(krb5_context context, krb5_ticket *val); # 4680 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_error(krb5_context context, register krb5_error *val); # 4691 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_creds(krb5_context context, krb5_creds *val); # 4702 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_cred_contents(krb5_context context, krb5_creds *val); # 4713 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_checksum(krb5_context context, register krb5_checksum *val); # 4724 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_checksum_contents(krb5_context context, register krb5_checksum *val); # 4735 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_keyblock(krb5_context context, register krb5_keyblock *val); # 4746 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_keyblock_contents(krb5_context context, register krb5_keyblock *key); # 4757 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_ap_rep_enc_part(krb5_context context, krb5_ap_rep_enc_part *val); # 4768 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_data(krb5_context context, krb5_data *val); void krb5_free_octet_data(krb5_context context, krb5_octet_data *val); # 4783 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_data_contents(krb5_context context, krb5_data *val); void krb5_free_unparsed_name(krb5_context context, char *val); # 4803 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_string(krb5_context context, char *val); # 4814 "/usr/include/krb5/krb5.h" 3 4 void krb5_free_enctypes(krb5_context context, krb5_enctype *val); void krb5_free_cksumtypes(krb5_context context, krb5_cksumtype *val); # 4844 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_us_timeofday(krb5_context context, krb5_timestamp *seconds, krb5_int32 *microseconds); # 4862 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_timeofday(krb5_context context, register krb5_timestamp *timeret); # 4879 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_check_clockskew(krb5_context context, krb5_timestamp date); # 4893 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_os_localaddr(krb5_context context, krb5_address ***addr); # 4912 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_default_realm(krb5_context context, char **lrealm); # 4928 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_default_realm(krb5_context context, const char *lrealm); void krb5_free_default_realm(krb5_context context, char *lrealm); # 4969 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_sname_to_principal(krb5_context context, const char *hostname, const char *sname, krb5_int32 type, krb5_principal *ret_princ); # 4993 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_sname_match(krb5_context context, krb5_const_principal matching, krb5_const_principal princ); # 5019 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_change_password(krb5_context context, krb5_creds *creds, char *newpw, int *result_code, krb5_data *result_code_string, krb5_data *result_string); # 5054 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_password(krb5_context context, krb5_creds *creds, char *newpw, krb5_principal change_password_for, int *result_code, krb5_data *result_code_string, krb5_data *result_string); # 5089 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_password_using_ccache(krb5_context context, krb5_ccache ccache, char *newpw, krb5_principal change_password_for, int *result_code, krb5_data *result_code_string, krb5_data *result_string); # 5117 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_chpw_message(krb5_context context, const krb5_data *server_string, char **message_out); # 5138 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_profile(krb5_context context, struct _profile_t ** profile); # 5224 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_req(krb5_context context, krb5_auth_context *auth_context, const krb5_data *inbuf, krb5_const_principal server, krb5_keytab keytab, krb5_flags *ap_req_options, krb5_ticket **ticket); # 5252 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_kt_read_service_key(krb5_context context, krb5_pointer keyprocarg, krb5_principal principal, krb5_kvno vno, krb5_enctype enctype, krb5_keyblock **key); # 5295 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_safe(krb5_context context, krb5_auth_context auth_context, const krb5_data *userdata, krb5_data *outbuf, krb5_replay_data *outdata); # 5334 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_priv(krb5_context context, krb5_auth_context auth_context, const krb5_data *userdata, krb5_data *outbuf, krb5_replay_data *outdata); # 5388 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_sendauth(krb5_context context, krb5_auth_context *auth_context, krb5_pointer fd, char *appl_version, krb5_principal client, krb5_principal server, krb5_flags ap_req_options, krb5_data *in_data, krb5_creds *in_creds, krb5_ccache ccache, krb5_error **error, krb5_ap_rep_enc_part **rep_result, krb5_creds **out_creds); # 5418 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_recvauth(krb5_context context, krb5_auth_context *auth_context, krb5_pointer fd, char *appl_version, krb5_principal server, krb5_int32 flags, krb5_keytab keytab, krb5_ticket **ticket); # 5440 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_recvauth_version(krb5_context context, krb5_auth_context *auth_context, krb5_pointer fd, krb5_principal server, krb5_int32 flags, krb5_keytab keytab, krb5_ticket **ticket, krb5_data *version); # 5477 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_ncred(krb5_context context, krb5_auth_context auth_context, krb5_creds **ppcreds, krb5_data **ppdata, krb5_replay_data *outdata); # 5503 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_mk_1cred(krb5_context context, krb5_auth_context auth_context, krb5_creds *pcreds, krb5_data **ppdata, krb5_replay_data *outdata); # 5528 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_rd_cred(krb5_context context, krb5_auth_context auth_context, krb5_data *pcreddata, krb5_creds ***pppcreds, krb5_replay_data *outdata); # 5562 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_fwd_tgt_creds(krb5_context context, krb5_auth_context auth_context, char *rhost, krb5_principal client, krb5_principal server, krb5_ccache cc, int forwardable, krb5_data *outbuf); # 5586 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_init(krb5_context context, krb5_auth_context *auth_context); # 5599 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_free(krb5_context context, krb5_auth_context auth_context); # 5617 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setflags(krb5_context context, krb5_auth_context auth_context, krb5_int32 flags); # 5635 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getflags(krb5_context context, krb5_auth_context auth_context, krb5_int32 *flags); # 5653 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_set_checksum_func( krb5_context context, krb5_auth_context auth_context, krb5_mk_req_checksum_func func, void *data); # 5669 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_get_checksum_func( krb5_context context, krb5_auth_context auth_context, krb5_mk_req_checksum_func *func, void **data); # 5691 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setaddrs(krb5_context context, krb5_auth_context auth_context, krb5_address *local_addr, krb5_address *remote_addr); # 5705 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getaddrs(krb5_context context, krb5_auth_context auth_context, krb5_address **local_addr, krb5_address **remote_addr); # 5725 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setports(krb5_context context, krb5_auth_context auth_context, krb5_address *local_port, krb5_address *remote_port); # 5738 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setuseruserkey(krb5_context context, krb5_auth_context auth_context, krb5_keyblock *keyblock); # 5755 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getkey(krb5_context context, krb5_auth_context auth_context, krb5_keyblock **keyblock); # 5771 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getkey_k(krb5_context context, krb5_auth_context auth_context, krb5_key *key); # 5788 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getsendsubkey(krb5_context ctx, krb5_auth_context ac, krb5_keyblock **keyblock); # 5803 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getsendsubkey_k(krb5_context ctx, krb5_auth_context ac, krb5_key *key); # 5820 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getrecvsubkey(krb5_context ctx, krb5_auth_context ac, krb5_keyblock **keyblock); # 5835 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getrecvsubkey_k(krb5_context ctx, krb5_auth_context ac, krb5_key *key); # 5849 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setsendsubkey(krb5_context ctx, krb5_auth_context ac, krb5_keyblock *keyblock); # 5867 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setsendsubkey_k(krb5_context ctx, krb5_auth_context ac, krb5_key key); # 5881 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setrecvsubkey(krb5_context ctx, krb5_auth_context ac, krb5_keyblock *keyblock); # 5899 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setrecvsubkey_k(krb5_context ctx, krb5_auth_context ac, krb5_key key); # 5928 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getlocalseqnumber(krb5_context context, krb5_auth_context auth_context, krb5_int32 *seqnumber); # 5945 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getremoteseqnumber(krb5_context context, krb5_auth_context auth_context, krb5_int32 *seqnumber); # 5972 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_setrcache(krb5_context context, krb5_auth_context auth_context, krb5_rcache rcache); # 5988 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getrcache(krb5_context context, krb5_auth_context auth_context, krb5_rcache *rcache); # 6004 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_getauthenticator(krb5_context context, krb5_auth_context auth_context, krb5_authenticator **authenticator); # 6020 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_set_req_cksumtype(krb5_context context, krb5_auth_context auth_context, krb5_cksumtype cksumtype); # 6065 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_read_password(krb5_context context, const char *prompt, const char *prompt2, char *return_pwd, unsigned int *size_return); # 6093 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_aname_to_localname(krb5_context context, krb5_const_principal aname, int lnsize_in, char *lname); # 6120 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_host_realm(krb5_context context, const char *host, char ***realmsp); # 6138 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_fallback_host_realm(krb5_context context, krb5_data *hdata, char ***realmsp); # 6153 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_free_host_realm(krb5_context context, char *const *realmlist); # 6169 "/usr/include/krb5/krb5.h" 3 4 krb5_boolean krb5_kuserok(krb5_context context, krb5_principal principal, const char *luser); # 6191 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_auth_con_genaddrs(krb5_context context, krb5_auth_context auth_context, int infd, int flags); # 6208 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_real_time(krb5_context context, krb5_timestamp seconds, krb5_int32 microseconds); # 6223 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_time_offsets(krb5_context context, krb5_timestamp *seconds, krb5_int32 *microseconds); # 6235 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_enctype(char *string, krb5_enctype *enctypep); # 6246 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_salttype(char *string, krb5_int32 *salttypep); # 6257 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_cksumtype(char *string, krb5_cksumtype *cksumtypep); # 6268 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_timestamp(char *string, krb5_timestamp *timestampp); # 6279 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_string_to_deltat(char *string, krb5_deltat *deltatp); # 6291 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_enctype_to_string(krb5_enctype enctype, char *buffer, size_t buflen); # 6310 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_enctype_to_name(krb5_enctype enctype, krb5_boolean shortest, char *buffer, size_t buflen); # 6323 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_salttype_to_string(krb5_int32 salttype, char *buffer, size_t buflen); # 6335 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_cksumtype_to_string(krb5_cksumtype cksumtype, char *buffer, size_t buflen); # 6350 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_timestamp_to_string(krb5_timestamp timestamp, char *buffer, size_t buflen); # 6367 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_timestamp_to_sfstring(krb5_timestamp timestamp, char *buffer, size_t buflen, char *pad); # 6380 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_deltat_to_string(krb5_deltat deltat, char *buffer, size_t buflen); # 6393 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_prompt { char *prompt; int hidden; krb5_data *reply; } krb5_prompt; typedef krb5_error_code ( *krb5_prompter_fct)(krb5_context context, void *data, const char *name, const char *banner, int num_prompts, krb5_prompt prompts[]); # 6430 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_prompter_posix(krb5_context context, void *data, const char *name, const char *banner, int num_prompts, krb5_prompt prompts[]); # 6572 "/usr/include/krb5/krb5.h" 3 4 typedef struct krb5_responder_context_st *krb5_responder_context; # 6588 "/usr/include/krb5/krb5.h" 3 4 const char * const * krb5_responder_list_questions(krb5_context ctx, krb5_responder_context rctx); # 6607 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_responder_get_challenge(krb5_context ctx, krb5_responder_context rctx, const char *question); # 6626 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_responder_set_answer(krb5_context ctx, krb5_responder_context rctx, const char *question, const char *answer); # 6650 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_error_code ( *krb5_responder_fn)(krb5_context ctx, void *data, krb5_responder_context rctx); typedef struct _krb5_responder_otp_tokeninfo { krb5_flags flags; krb5_int32 format; krb5_int32 length; char *vendor; char *challenge; char *token_id; char *alg_id; } krb5_responder_otp_tokeninfo; typedef struct _krb5_responder_otp_challenge { char *service; krb5_responder_otp_tokeninfo **tokeninfo; } krb5_responder_otp_challenge; # 6686 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_responder_otp_get_challenge(krb5_context ctx, krb5_responder_context rctx, krb5_responder_otp_challenge **chl); # 6702 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_responder_otp_set_answer(krb5_context ctx, krb5_responder_context rctx, size_t ti, const char *value, const char *pin); # 6715 "/usr/include/krb5/krb5.h" 3 4 void krb5_responder_otp_challenge_free(krb5_context ctx, krb5_responder_context rctx, krb5_responder_otp_challenge *chl); typedef struct _krb5_responder_pkinit_identity { char *identity; krb5_int32 token_flags; } krb5_responder_pkinit_identity; typedef struct _krb5_responder_pkinit_challenge { krb5_responder_pkinit_identity **identities; } krb5_responder_pkinit_challenge; # 6746 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_responder_pkinit_get_challenge(krb5_context ctx, krb5_responder_context rctx, krb5_responder_pkinit_challenge **chl_out); # 6761 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_responder_pkinit_set_answer(krb5_context ctx, krb5_responder_context rctx, const char *identity, const char *pin); # 6774 "/usr/include/krb5/krb5.h" 3 4 void krb5_responder_pkinit_challenge_free(krb5_context ctx, krb5_responder_context rctx, krb5_responder_pkinit_challenge *chl); typedef struct _krb5_get_init_creds_opt { krb5_flags flags; krb5_deltat tkt_life; krb5_deltat renew_life; int forwardable; int proxiable; krb5_enctype *etype_list; int etype_list_length; krb5_address **address_list; krb5_preauthtype *preauth_list; int preauth_list_length; krb5_data *salt; } krb5_get_init_creds_opt; # 6820 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_alloc(krb5_context context, krb5_get_init_creds_opt **opt); # 6832 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_free(krb5_context context, krb5_get_init_creds_opt *opt); void krb5_get_init_creds_opt_init(krb5_get_init_creds_opt *opt); void krb5_get_init_creds_opt_set_tkt_life(krb5_get_init_creds_opt *opt, krb5_deltat tkt_life); void krb5_get_init_creds_opt_set_renew_life(krb5_get_init_creds_opt *opt, krb5_deltat renew_life); void krb5_get_init_creds_opt_set_forwardable(krb5_get_init_creds_opt *opt, int forwardable); void krb5_get_init_creds_opt_set_proxiable(krb5_get_init_creds_opt *opt, int proxiable); void krb5_get_init_creds_opt_set_canonicalize(krb5_get_init_creds_opt *opt, int canonicalize); # 6901 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_anonymous(krb5_get_init_creds_opt *opt, int anonymous); # 6912 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_etype_list(krb5_get_init_creds_opt *opt, krb5_enctype *etype_list, int etype_list_length); void krb5_get_init_creds_opt_set_address_list(krb5_get_init_creds_opt *opt, krb5_address **addresses); # 6938 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_preauth_list(krb5_get_init_creds_opt *opt, krb5_preauthtype *preauth_list, int preauth_list_length); # 6954 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_salt(krb5_get_init_creds_opt *opt, krb5_data *salt); # 6968 "/usr/include/krb5/krb5.h" 3 4 void krb5_get_init_creds_opt_set_change_password_prompt(krb5_get_init_creds_opt *opt, int prompt); typedef struct _krb5_gic_opt_pa_data { char *attr; char *value; } krb5_gic_opt_pa_data; # 6990 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_pa(krb5_context context, krb5_get_init_creds_opt *opt, const char *attr, const char *value); # 7010 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_fast_ccache_name(krb5_context context, krb5_get_init_creds_opt *opt, const char *fast_ccache_name); # 7027 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_fast_ccache(krb5_context context, krb5_get_init_creds_opt *opt, krb5_ccache ccache); # 7048 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_in_ccache(krb5_context context, krb5_get_init_creds_opt *opt, krb5_ccache ccache); # 7066 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_out_ccache(krb5_context context, krb5_get_init_creds_opt *opt, krb5_ccache ccache); # 7084 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_fast_flags(krb5_context context, krb5_get_init_creds_opt *opt, krb5_flags flags); # 7099 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_get_fast_flags(krb5_context context, krb5_get_init_creds_opt *opt, krb5_flags *out_flags); typedef void ( *krb5_expire_callback_func)(krb5_context context, void *data, krb5_timestamp password_expiration, krb5_timestamp account_expiration, krb5_boolean is_last_req); # 7152 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_expire_callback(krb5_context context, krb5_get_init_creds_opt *opt, krb5_expire_callback_func cb, void *data); # 7168 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_opt_set_responder(krb5_context context, krb5_get_init_creds_opt *opt, krb5_responder_fn responder, void *data); # 7217 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_password(krb5_context context, krb5_creds *creds, krb5_principal client, const char *password, krb5_prompter_fct prompter, void *data, krb5_deltat start_time, const char *in_tkt_service, krb5_get_init_creds_opt *k5_gic_options); struct _krb5_init_creds_context; typedef struct _krb5_init_creds_context *krb5_init_creds_context; # 7236 "/usr/include/krb5/krb5.h" 3 4 void krb5_init_creds_free(krb5_context context, krb5_init_creds_context ctx); # 7251 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_get(krb5_context context, krb5_init_creds_context ctx); # 7268 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_get_creds(krb5_context context, krb5_init_creds_context ctx, krb5_creds *creds); # 7281 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_get_error(krb5_context context, krb5_init_creds_context ctx, krb5_error **error); # 7301 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_init(krb5_context context, krb5_principal client, krb5_prompter_fct prompter, void *data, krb5_deltat start_time, krb5_get_init_creds_opt *options, krb5_init_creds_context *ctx); # 7319 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_set_keytab(krb5_context context, krb5_init_creds_context ctx, krb5_keytab keytab); # 7350 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_step(krb5_context context, krb5_init_creds_context ctx, krb5_data *in, krb5_data *out, krb5_data *realm, unsigned int *flags); # 7367 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_set_password(krb5_context context, krb5_init_creds_context ctx, const char *password); # 7384 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_set_service(krb5_context context, krb5_init_creds_context ctx, const char *service); # 7400 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_init_creds_get_times(krb5_context context, krb5_init_creds_context ctx, krb5_ticket_times *times); struct _krb5_tkt_creds_context; typedef struct _krb5_tkt_creds_context *krb5_tkt_creds_context; # 7431 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_init(krb5_context context, krb5_ccache ccache, krb5_creds *creds, krb5_flags options, krb5_tkt_creds_context *ctx); # 7450 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_get(krb5_context context, krb5_tkt_creds_context ctx); # 7469 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_get_creds(krb5_context context, krb5_tkt_creds_context ctx, krb5_creds *creds); # 7481 "/usr/include/krb5/krb5.h" 3 4 void krb5_tkt_creds_free(krb5_context context, krb5_tkt_creds_context ctx); # 7514 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_step(krb5_context context, krb5_tkt_creds_context ctx, krb5_data *in, krb5_data *out, krb5_data *realm, unsigned int *flags); # 7533 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_tkt_creds_get_times(krb5_context context, krb5_tkt_creds_context ctx, krb5_ticket_times *times); # 7561 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_init_creds_keytab(krb5_context context, krb5_creds *creds, krb5_principal client, krb5_keytab arg_keytab, krb5_deltat start_time, const char *in_tkt_service, krb5_get_init_creds_opt *k5_gic_options); typedef struct _krb5_verify_init_creds_opt { krb5_flags flags; int ap_req_nofail; } krb5_verify_init_creds_opt; # 7579 "/usr/include/krb5/krb5.h" 3 4 void krb5_verify_init_creds_opt_init(krb5_verify_init_creds_opt *k5_vic_options); # 7597 "/usr/include/krb5/krb5.h" 3 4 void krb5_verify_init_creds_opt_set_ap_req_nofail(krb5_verify_init_creds_opt * k5_vic_options, int ap_req_nofail); # 7632 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_verify_init_creds(krb5_context context, krb5_creds *creds, krb5_principal server, krb5_keytab keytab, krb5_ccache *ccache, krb5_verify_init_creds_opt *options); # 7671 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_validated_creds(krb5_context context, krb5_creds *creds, krb5_principal client, krb5_ccache ccache, const char *in_tkt_service); # 7697 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_get_renewed_creds(krb5_context context, krb5_creds *creds, krb5_principal client, krb5_ccache ccache, const char *in_tkt_service); # 7710 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_decode_ticket(const krb5_data *code, krb5_ticket **rep); # 7728 "/usr/include/krb5/krb5.h" 3 4 void krb5_appdefault_string(krb5_context context, const char *appname, const krb5_data *realm, const char *option, const char *default_value, char ** ret_value); # 7748 "/usr/include/krb5/krb5.h" 3 4 void krb5_appdefault_boolean(krb5_context context, const char *appname, const krb5_data *realm, const char *option, int default_value, int *ret_value); # 7765 "/usr/include/krb5/krb5.h" 3 4 typedef krb5_int32 krb5_prompt_type; # 7780 "/usr/include/krb5/krb5.h" 3 4 krb5_prompt_type* krb5_get_prompt_types(krb5_context context); # 7792 "/usr/include/krb5/krb5.h" 3 4 void krb5_set_error_message(krb5_context ctx, krb5_error_code code, const char *fmt, ...) ; # 7807 "/usr/include/krb5/krb5.h" 3 4 void krb5_vset_error_message(krb5_context ctx, krb5_error_code code, const char *fmt, va_list args) ; void krb5_copy_error_message(krb5_context dest_ctx, krb5_context src_ctx); # 7844 "/usr/include/krb5/krb5.h" 3 4 const char * krb5_get_error_message(krb5_context ctx, krb5_error_code code); void krb5_free_error_message(krb5_context ctx, const char *msg); # 7864 "/usr/include/krb5/krb5.h" 3 4 void krb5_clear_error_message(krb5_context ctx); # 7879 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_decode_authdata_container(krb5_context context, krb5_authdatatype type, const krb5_authdata *container, krb5_authdata ***authdata); # 7898 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_encode_authdata_container(krb5_context context, krb5_authdatatype type, krb5_authdata * const*authdata, krb5_authdata ***container); # 7920 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_make_authdata_kdc_issued(krb5_context context, const krb5_keyblock *key, krb5_const_principal issuer, krb5_authdata *const *authdata, krb5_authdata ***ad_kdcissued); # 7941 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_verify_authdata_kdc_issued(krb5_context context, const krb5_keyblock *key, const krb5_authdata *ad_kdcissued, krb5_principal *issuer, krb5_authdata ***authdata); # 7961 "/usr/include/krb5/krb5.h" 3 4 struct krb5_pac_data; typedef struct krb5_pac_data *krb5_pac; # 7987 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_add_buffer(krb5_context context, krb5_pac pac, krb5_ui_4 type, const krb5_data *data); # 7999 "/usr/include/krb5/krb5.h" 3 4 void krb5_pac_free(krb5_context context, krb5_pac pac); # 8014 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_get_buffer(krb5_context context, krb5_pac pac, krb5_ui_4 type, krb5_data *data); # 8028 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_get_types(krb5_context context, krb5_pac pac, size_t *len, krb5_ui_4 **types); # 8042 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_init(krb5_context context, krb5_pac *pac); # 8057 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_parse(krb5_context context, const void *ptr, size_t len, krb5_pac *pac); # 8087 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_verify(krb5_context context, const krb5_pac pac, krb5_timestamp authtime, krb5_const_principal principal, const krb5_keyblock *server, const krb5_keyblock *privsvr); # 8110 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_pac_sign(krb5_context context, krb5_pac pac, krb5_timestamp authtime, krb5_const_principal principal, const krb5_keyblock *server_key, const krb5_keyblock *privsvr_key, krb5_data *data); # 8126 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_allow_weak_crypto(krb5_context context, krb5_boolean enable); # 8136 "/usr/include/krb5/krb5.h" 3 4 typedef struct _krb5_trace_info { const char *message; } krb5_trace_info; typedef void ( *krb5_trace_callback)(krb5_context context, const krb5_trace_info *info, void *cb_data); # 8168 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_trace_callback(krb5_context context, krb5_trace_callback fn, void *cb_data); # 8188 "/usr/include/krb5/krb5.h" 3 4 krb5_error_code krb5_set_trace_filename(krb5_context context, const char *filename); } # 8211 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 19 "/usr/include/et/com_err.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 20 "/usr/include/et/com_err.h" 2 3 4 typedef long errcode_t; struct error_table { char const * const * msgs; long base; int n_msgs; }; struct et_list; extern void com_err (const char *, long, const char *, ...) __attribute__((format(printf, 3, 4))); extern void com_err_va (const char *whoami, errcode_t code, const char *fmt, va_list args) __attribute__((format(printf, 3, 0))); extern char const *error_message (long); extern void (*com_err_hook) (const char *, long, const char *, va_list); extern void (*set_com_err_hook (void (*) (const char *, long, const char *, va_list))) (const char *, long, const char *, va_list); extern void (*reset_com_err_hook (void)) (const char *, long, const char *, va_list); extern int init_error_table(const char * const *msgs, long base, int count); extern char *(*set_com_err_gettext (char *(*) (const char *))) (const char *); extern errcode_t add_error_table(const struct error_table * et); extern errcode_t remove_error_table(const struct error_table * et); extern void add_to_error_table(struct et_list *new_table); extern const char *com_right(struct et_list *list, long code); extern const char *com_right_r(struct et_list *list, long code, char *str, size_t len); extern void initialize_error_table_r(struct et_list **list, const char **messages, int num_errors, long base); extern void free_error_table(struct et_list *et); extern int et_list_lock(void); extern int et_list_unlock(void); # 8212 "/usr/include/krb5/krb5.h" 2 3 4 # 8469 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_krb5_error_table; extern void initialize_krb5_error_table(void); extern void initialize_krb5_error_table_r(struct et_list **list); # 8485 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 8486 "/usr/include/krb5/krb5.h" 2 3 4 # 8495 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_k5e1_error_table; extern void initialize_k5e1_error_table(void); extern void initialize_k5e1_error_table_r(struct et_list **list); # 8511 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 8512 "/usr/include/krb5/krb5.h" 2 3 4 # 8559 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_kdb5_error_table; extern void initialize_kdb5_error_table(void); extern void initialize_kdb5_error_table_r(struct et_list **list); # 8575 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 8576 "/usr/include/krb5/krb5.h" 2 3 4 # 8638 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_kv5m_error_table; extern void initialize_kv5m_error_table(void); extern void initialize_kv5m_error_table_r(struct et_list **list); # 8654 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 8655 "/usr/include/krb5/krb5.h" 2 3 4 # 8665 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_k524_error_table; extern void initialize_k524_error_table(void); extern void initialize_k524_error_table_r(struct et_list **list); # 8681 "/usr/include/krb5/krb5.h" 3 4 # 1 "/usr/include/et/com_err.h" 1 3 4 # 8682 "/usr/include/krb5/krb5.h" 2 3 4 # 8697 "/usr/include/krb5/krb5.h" 3 4 extern const struct error_table et_asn1_error_table; extern void initialize_asn1_error_table(void); extern void initialize_asn1_error_table_r(struct et_list **list); # 8 "/usr/include/krb5.h" 2 3 4 # 73 "/usr/include/openssl/kssl.h" 2 3 4 # 84 "/usr/include/openssl/kssl.h" 3 4 extern "C" { # 129 "/usr/include/openssl/kssl.h" 3 4 typedef struct kssl_err_st { int reason; char text[255 +1]; } KSSL_ERR; typedef struct kssl_ctx_st { char *service_name; char *service_host; char *client_princ; char *keytab_file; char *cred_cache; krb5_enctype enctype; int length; krb5_octet *key; } KSSL_CTX; # 162 "/usr/include/openssl/kssl.h" 3 4 krb5_error_code kssl_ctx_setstring(KSSL_CTX *kssl_ctx, int which, char *text); KSSL_CTX *kssl_ctx_new(void); KSSL_CTX *kssl_ctx_free(KSSL_CTX *kssl_ctx); void kssl_ctx_show(KSSL_CTX *kssl_ctx); krb5_error_code kssl_ctx_setprinc(KSSL_CTX *kssl_ctx, int which, krb5_data *realm, krb5_data *entity, int nentities); krb5_error_code kssl_cget_tkt(KSSL_CTX *kssl_ctx, krb5_data **enc_tktp, krb5_data *authenp, KSSL_ERR *kssl_err); krb5_error_code kssl_sget_tkt(KSSL_CTX *kssl_ctx, krb5_data *indata, krb5_ticket_times *ttimes, KSSL_ERR *kssl_err); krb5_error_code kssl_ctx_setkey(KSSL_CTX *kssl_ctx, krb5_keyblock *session); void kssl_err_set(KSSL_ERR *kssl_err, int reason, char *text); void kssl_krb5_free_data_contents(krb5_context context, krb5_data *data); krb5_error_code kssl_build_principal_2(krb5_context context, krb5_principal *princ, int rlen, const char *realm, int slen, const char *svc, int hlen, const char *host); krb5_error_code kssl_validate_times(krb5_timestamp atime, krb5_ticket_times *ttimes); krb5_error_code kssl_check_authent(KSSL_CTX *kssl_ctx, krb5_data *authentp, krb5_timestamp *atimep, KSSL_ERR *kssl_err); unsigned char *kssl_skip_confound(krb5_enctype enctype, unsigned char *authn); void SSL_set0_kssl_ctx(SSL *s, KSSL_CTX *kctx); KSSL_CTX * SSL_get0_kssl_ctx(SSL *s); char *kssl_ctx_get0_client_princ(KSSL_CTX *kctx); } # 166 "/usr/include/openssl/ssl.h" 2 3 4 extern "C" { # 353 "/usr/include/openssl/ssl.h" 3 4 } extern "C" { # 370 "/usr/include/openssl/ssl.h" 3 4 typedef struct ssl_st *ssl_crock_st; typedef struct tls_session_ticket_ext_st TLS_SESSION_TICKET_EXT; typedef struct ssl_method_st SSL_METHOD; typedef struct ssl_cipher_st SSL_CIPHER; typedef struct ssl_session_st SSL_SESSION; struct stack_st_SSL_CIPHER { _STACK stack; }; typedef struct srtp_protection_profile_st { const char *name; unsigned long id; } SRTP_PROTECTION_PROFILE; struct stack_st_SRTP_PROTECTION_PROFILE { _STACK stack; }; typedef int (*tls_session_ticket_ext_cb_fn)(SSL *s, const unsigned char *data, int len, void *arg); typedef int (*tls_session_secret_cb_fn)(SSL *s, void *secret, int *secret_len, struct stack_st_SSL_CIPHER *peer_ciphers, SSL_CIPHER **cipher, void *arg); struct ssl_cipher_st { int valid; const char *name; unsigned long id; unsigned long algorithm_mkey; unsigned long algorithm_auth; unsigned long algorithm_enc; unsigned long algorithm_mac; unsigned long algorithm_ssl; unsigned long algo_strength; unsigned long algorithm2; int strength_bits; int alg_bits; }; struct ssl_method_st { int version; int (*ssl_new)(SSL *s); void (*ssl_clear)(SSL *s); void (*ssl_free)(SSL *s); int (*ssl_accept)(SSL *s); int (*ssl_connect)(SSL *s); int (*ssl_read)(SSL *s,void *buf,int len); int (*ssl_peek)(SSL *s,void *buf,int len); int (*ssl_write)(SSL *s,const void *buf,int len); int (*ssl_shutdown)(SSL *s); int (*ssl_renegotiate)(SSL *s); int (*ssl_renegotiate_check)(SSL *s); long (*ssl_get_message)(SSL *s, int st1, int stn, int mt, long max, int *ok); int (*ssl_read_bytes)(SSL *s, int type, unsigned char *buf, int len, int peek); int (*ssl_write_bytes)(SSL *s, int type, const void *buf_, int len); int (*ssl_dispatch_alert)(SSL *s); long (*ssl_ctrl)(SSL *s,int cmd,long larg,void *parg); long (*ssl_ctx_ctrl)(SSL_CTX *ctx,int cmd,long larg,void *parg); const SSL_CIPHER *(*get_cipher_by_char)(const unsigned char *ptr); int (*put_cipher_by_char)(const SSL_CIPHER *cipher,unsigned char *ptr); int (*ssl_pending)(const SSL *s); int (*num_ciphers)(void); const SSL_CIPHER *(*get_cipher)(unsigned ncipher); const struct ssl_method_st *(*get_ssl_method)(int version); long (*get_timeout)(void); struct ssl3_enc_method *ssl3_enc; int (*ssl_version)(void); long (*ssl_callback_ctrl)(SSL *s, int cb_id, void (*fp)(void)); long (*ssl_ctx_callback_ctrl)(SSL_CTX *s, int cb_id, void (*fp)(void)); }; # 475 "/usr/include/openssl/ssl.h" 3 4 struct ssl_session_st { int ssl_version; unsigned int key_arg_length; unsigned char key_arg[8]; int master_key_length; unsigned char master_key[48]; unsigned int session_id_length; unsigned char session_id[32]; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; unsigned int krb5_client_princ_len; unsigned char krb5_client_princ[256]; char *psk_identity_hint; char *psk_identity; int not_resumable; struct sess_cert_st *sess_cert; X509 *peer; long verify_result; int references; long timeout; long time; unsigned int compress_meth; const SSL_CIPHER *cipher; unsigned long cipher_id; struct stack_st_SSL_CIPHER *ciphers; CRYPTO_EX_DATA ex_data; struct ssl_session_st *prev,*next; char *tlsext_hostname; size_t tlsext_ecpointformatlist_length; unsigned char *tlsext_ecpointformatlist; size_t tlsext_ellipticcurvelist_length; unsigned char *tlsext_ellipticcurvelist; unsigned char *tlsext_tick; size_t tlsext_ticklen; long tlsext_tick_lifetime_hint; }; # 710 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_set_msg_callback(SSL_CTX *ctx, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)); void SSL_set_msg_callback(SSL *ssl, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)); # 737 "/usr/include/openssl/ssl.h" 3 4 typedef int (*GEN_SESSION_CB)(const SSL *ssl, unsigned char *id, unsigned int *id_len); typedef struct ssl_comp_st SSL_COMP; struct ssl_comp_st { int id; const char *name; COMP_METHOD *method; }; struct stack_st_SSL_COMP { _STACK stack; }; struct lhash_st_SSL_SESSION { int dummy; }; struct ssl_ctx_st { const SSL_METHOD *method; struct stack_st_SSL_CIPHER *cipher_list; struct stack_st_SSL_CIPHER *cipher_list_by_id; struct x509_store_st *cert_store; struct lhash_st_SSL_SESSION *sessions; unsigned long session_cache_size; struct ssl_session_st *session_cache_head; struct ssl_session_st *session_cache_tail; int session_cache_mode; long session_timeout; # 794 "/usr/include/openssl/ssl.h" 3 4 int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess); void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess); SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy); struct { int sess_connect; int sess_connect_renegotiate; int sess_connect_good; int sess_accept; int sess_accept_renegotiate; int sess_accept_good; int sess_miss; int sess_timeout; int sess_cache_full; int sess_hit; int sess_cb_hit; } stats; int references; int (*app_verify_callback)(X509_STORE_CTX *, void *); void *app_verify_arg; pem_password_cb *default_passwd_callback; void *default_passwd_callback_userdata; int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey); int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len); int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len); CRYPTO_EX_DATA ex_data; const EVP_MD *rsa_md5; const EVP_MD *md5; const EVP_MD *sha1; struct stack_st_X509 *extra_certs; struct stack_st_SSL_COMP *comp_methods; void (*info_callback)(const SSL *ssl,int type,int val); struct stack_st_X509_NAME *client_CA; unsigned long options; unsigned long mode; long max_cert_list; struct cert_st *cert; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg); void *msg_callback_arg; int verify_mode; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; int (*default_verify_callback)(int ok,X509_STORE_CTX *ctx); GEN_SESSION_CB generate_session_id; X509_VERIFY_PARAM *param; int quiet_shutdown; unsigned int max_send_fragment; ENGINE *client_cert_engine; int (*tlsext_servername_callback)(SSL*, int *, void *); void *tlsext_servername_arg; unsigned char tlsext_tick_key_name[16]; unsigned char tlsext_tick_hmac_key[16]; unsigned char tlsext_tick_aes_key[16]; int (*tlsext_ticket_key_cb)(SSL *ssl, unsigned char *name, unsigned char *iv, EVP_CIPHER_CTX *ectx, HMAC_CTX *hctx, int enc); int (*tlsext_status_cb)(SSL *ssl, void *arg); void *tlsext_status_arg; int (*tlsext_opaque_prf_input_callback)(SSL *, void *peerinput, size_t len, void *arg); void *tlsext_opaque_prf_input_callback_arg; char *psk_identity_hint; unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len); unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len); unsigned int freelist_max_len; struct ssl3_buf_freelist_st *wbuf_freelist; struct ssl3_buf_freelist_st *rbuf_freelist; # 952 "/usr/include/openssl/ssl.h" 3 4 int (*next_protos_advertised_cb)(SSL *s, const unsigned char **buf, unsigned int *len, void *arg); void *next_protos_advertised_cb_arg; int (*next_proto_select_cb)(SSL *s, unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, void *arg); void *next_proto_select_cb_arg; struct stack_st_SRTP_PROTECTION_PROFILE *srtp_profiles; }; # 982 "/usr/include/openssl/ssl.h" 3 4 struct lhash_st_SSL_SESSION *SSL_CTX_sessions(SSL_CTX *ctx); # 1008 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_sess_set_new_cb(SSL_CTX *ctx, int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess)); int (*SSL_CTX_sess_get_new_cb(SSL_CTX *ctx))(struct ssl_st *ssl, SSL_SESSION *sess); void SSL_CTX_sess_set_remove_cb(SSL_CTX *ctx, void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess)); void (*SSL_CTX_sess_get_remove_cb(SSL_CTX *ctx))(struct ssl_ctx_st *ctx, SSL_SESSION *sess); void SSL_CTX_sess_set_get_cb(SSL_CTX *ctx, SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy)); SSL_SESSION *(*SSL_CTX_sess_get_get_cb(SSL_CTX *ctx))(struct ssl_st *ssl, unsigned char *Data, int len, int *copy); void SSL_CTX_set_info_callback(SSL_CTX *ctx, void (*cb)(const SSL *ssl,int type,int val)); void (*SSL_CTX_get_info_callback(SSL_CTX *ctx))(const SSL *ssl,int type,int val); void SSL_CTX_set_client_cert_cb(SSL_CTX *ctx, int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey)); int (*SSL_CTX_get_client_cert_cb(SSL_CTX *ctx))(SSL *ssl, X509 **x509, EVP_PKEY **pkey); int SSL_CTX_set_client_cert_engine(SSL_CTX *ctx, ENGINE *e); void SSL_CTX_set_cookie_generate_cb(SSL_CTX *ctx, int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len)); void SSL_CTX_set_cookie_verify_cb(SSL_CTX *ctx, int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len)); void SSL_CTX_set_next_protos_advertised_cb(SSL_CTX *s, int (*cb) (SSL *ssl, const unsigned char **out, unsigned int *outlen, void *arg), void *arg); void SSL_CTX_set_next_proto_select_cb(SSL_CTX *s, int (*cb) (SSL *ssl, unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, void *arg), void *arg); int SSL_select_next_proto(unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, const unsigned char *client, unsigned int client_len); void SSL_get0_next_proto_negotiated(const SSL *s, const unsigned char **data, unsigned *len); # 1055 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_set_psk_client_callback(SSL_CTX *ctx, unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len)); void SSL_set_psk_client_callback(SSL *ssl, unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len)); void SSL_CTX_set_psk_server_callback(SSL_CTX *ctx, unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len)); void SSL_set_psk_server_callback(SSL *ssl, unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len)); int SSL_CTX_use_psk_identity_hint(SSL_CTX *ctx, const char *identity_hint); int SSL_use_psk_identity_hint(SSL *s, const char *identity_hint); const char *SSL_get_psk_identity_hint(const SSL *s); const char *SSL_get_psk_identity(const SSL *s); # 1091 "/usr/include/openssl/ssl.h" 3 4 struct ssl_st { int version; int type; const SSL_METHOD *method; BIO *rbio; BIO *wbio; BIO *bbio; # 1119 "/usr/include/openssl/ssl.h" 3 4 int rwstate; int in_handshake; int (*handshake_func)(SSL *); # 1133 "/usr/include/openssl/ssl.h" 3 4 int server; int new_session; int quiet_shutdown; int shutdown; int state; int rstate; BUF_MEM *init_buf; void *init_msg; int init_num; int init_off; unsigned char *packet; unsigned int packet_length; struct ssl2_state_st *s2; struct ssl3_state_st *s3; struct dtls1_state_st *d1; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg); void *msg_callback_arg; int hit; X509_VERIFY_PARAM *param; struct stack_st_SSL_CIPHER *cipher_list; struct stack_st_SSL_CIPHER *cipher_list_by_id; int mac_flags; EVP_CIPHER_CTX *enc_read_ctx; EVP_MD_CTX *read_hash; COMP_CTX *expand; EVP_CIPHER_CTX *enc_write_ctx; EVP_MD_CTX *write_hash; COMP_CTX *compress; # 1201 "/usr/include/openssl/ssl.h" 3 4 struct cert_st *cert; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; SSL_SESSION *session; GEN_SESSION_CB generate_session_id; int verify_mode; int (*verify_callback)(int ok,X509_STORE_CTX *ctx); void (*info_callback)(const SSL *ssl,int type,int val); int error; int error_code; KSSL_CTX *kssl_ctx; unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len); unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len); SSL_CTX *ctx; int debug; long verify_result; CRYPTO_EX_DATA ex_data; struct stack_st_X509_NAME *client_CA; int references; unsigned long options; unsigned long mode; long max_cert_list; int first_packet; int client_version; unsigned int max_send_fragment; void (*tlsext_debug_cb)(SSL *s, int client_server, int type, unsigned char *data, int len, void *arg); void *tlsext_debug_arg; char *tlsext_hostname; int servername_done; int tlsext_status_type; int tlsext_status_expected; struct stack_st_OCSP_RESPID *tlsext_ocsp_ids; X509_EXTENSIONS *tlsext_ocsp_exts; unsigned char *tlsext_ocsp_resp; int tlsext_ocsp_resplen; int tlsext_ticket_expected; size_t tlsext_ecpointformatlist_length; unsigned char *tlsext_ecpointformatlist; size_t tlsext_ellipticcurvelist_length; unsigned char *tlsext_ellipticcurvelist; void *tlsext_opaque_prf_input; size_t tlsext_opaque_prf_input_len; TLS_SESSION_TICKET_EXT *tlsext_session_ticket; tls_session_ticket_ext_cb_fn tls_session_ticket_ext_cb; void *tls_session_ticket_ext_cb_arg; tls_session_secret_cb_fn tls_session_secret_cb; void *tls_session_secret_cb_arg; SSL_CTX * initial_ctx; # 1314 "/usr/include/openssl/ssl.h" 3 4 unsigned char *next_proto_negotiated; unsigned char next_proto_negotiated_len; struct stack_st_SRTP_PROTECTION_PROFILE *srtp_profiles; SRTP_PROTECTION_PROFILE *srtp_profile; unsigned int tlsext_heartbeat; unsigned int tlsext_hb_pending; unsigned int tlsext_hb_seq; int renegotiate; }; } # 1 "/usr/include/openssl/ssl2.h" 1 3 4 # 63 "/usr/include/openssl/ssl2.h" 3 4 extern "C" { # 160 "/usr/include/openssl/ssl2.h" 3 4 typedef struct ssl2_state_st { int three_byte_header; int clear_text; int escape; int ssl2_rollback; unsigned int wnum; int wpend_tot; const unsigned char *wpend_buf; int wpend_off; int wpend_len; int wpend_ret; int rbuf_left; int rbuf_offs; unsigned char *rbuf; unsigned char *wbuf; unsigned char *write_ptr; unsigned int padding; unsigned int rlength; int ract_data_length; unsigned int wlength; int wact_data_length; unsigned char *ract_data; unsigned char *wact_data; unsigned char *mac_data; unsigned char *read_key; unsigned char *write_key; unsigned int challenge_length; unsigned char challenge[32]; unsigned int conn_id_length; unsigned char conn_id[16]; unsigned int key_material_length; unsigned char key_material[24*2]; unsigned long read_sequence; unsigned long write_sequence; struct { unsigned int conn_id_length; unsigned int cert_type; unsigned int cert_length; unsigned int csl; unsigned int clear; unsigned int enc; unsigned char ccl[32]; unsigned int cipher_spec_length; unsigned int session_id_length; unsigned int clen; unsigned int rlen; } tmp; } SSL2_STATE; # 269 "/usr/include/openssl/ssl2.h" 3 4 } # 1347 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/ssl3.h" 1 3 4 # 125 "/usr/include/openssl/ssl3.h" 3 4 # 1 "/usr/include/openssl/ssl.h" 1 3 4 # 126 "/usr/include/openssl/ssl3.h" 2 3 4 extern "C" { # 353 "/usr/include/openssl/ssl3.h" 3 4 typedef struct ssl3_record_st { int type; unsigned int length; unsigned int off; unsigned char *data; unsigned char *input; unsigned char *comp; unsigned long epoch; unsigned char seq_num[8]; } SSL3_RECORD; typedef struct ssl3_buffer_st { unsigned char *buf; size_t len; int offset; int left; } SSL3_BUFFER; # 415 "/usr/include/openssl/ssl3.h" 3 4 typedef struct ssl3_state_st { long flags; int delay_buf_pop_ret; unsigned char read_sequence[8]; int read_mac_secret_size; unsigned char read_mac_secret[64]; unsigned char write_sequence[8]; int write_mac_secret_size; unsigned char write_mac_secret[64]; unsigned char server_random[32]; unsigned char client_random[32]; int need_empty_fragments; int empty_fragment_done; int init_extra; SSL3_BUFFER rbuf; SSL3_BUFFER wbuf; SSL3_RECORD rrec; SSL3_RECORD wrec; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[4]; unsigned int handshake_fragment_len; unsigned int wnum; int wpend_tot; int wpend_type; int wpend_ret; const unsigned char *wpend_buf; BIO *handshake_buffer; EVP_MD_CTX **handshake_dgst; int change_cipher_spec; int warn_alert; int fatal_alert; int alert_dispatch; unsigned char send_alert[2]; int renegotiate; int total_renegotiations; int num_renegotiations; int in_read_app_data; void *client_opaque_prf_input; size_t client_opaque_prf_input_len; void *server_opaque_prf_input; size_t server_opaque_prf_input_len; struct { unsigned char cert_verify_md[64*2]; unsigned char finish_md[64*2]; int finish_md_len; unsigned char peer_finish_md[64*2]; int peer_finish_md_len; unsigned long message_size; int message_type; const SSL_CIPHER *new_cipher; DH *dh; EC_KEY *ecdh; int next_state; int reuse_message; int cert_req; int ctype_num; char ctype[9]; struct stack_st_X509_NAME *ca_names; int use_rsa_tmp; int key_block_length; unsigned char *key_block; const EVP_CIPHER *new_sym_enc; const EVP_MD *new_hash; int new_mac_pkey_type; int new_mac_secret_size; const SSL_COMP *new_compression; int cert_request; } tmp; unsigned char previous_client_finished[64]; unsigned char previous_client_finished_len; unsigned char previous_server_finished[64]; unsigned char previous_server_finished_len; int send_connection_binding; int next_proto_neg_seen; char is_probably_safari; } SSL3_STATE; # 703 "/usr/include/openssl/ssl3.h" 3 4 } # 1348 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/tls1.h" 1 3 4 # 157 "/usr/include/openssl/tls1.h" 3 4 extern "C" { # 291 "/usr/include/openssl/tls1.h" 3 4 const char *SSL_get_servername(const SSL *s, const int type); int SSL_get_servername_type(const SSL *s); int SSL_export_keying_material(SSL *s, unsigned char *out, size_t olen, const char *label, size_t llen, const unsigned char *p, size_t plen, int use_context); # 735 "/usr/include/openssl/tls1.h" 3 4 struct tls_session_ticket_ext_st { unsigned short length; void *data; }; } # 1349 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/dtls1.h" 1 3 4 # 64 "/usr/include/openssl/dtls1.h" 3 4 # 1 "/usr/include/openssl/pqueue.h" 1 3 4 # 65 "/usr/include/openssl/pqueue.h" 3 4 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 extern "C" { # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 33 "/usr/include/string.h" 2 3 4 # 44 "/usr/include/string.h" 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) throw () __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern "C++" { extern void *memchr (void *__s, int __c, size_t __n) throw () __asm ("memchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern const void *memchr (const void *__s, int __c, size_t __n) throw () __asm ("memchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 94 "/usr/include/string.h" 3 4 } extern "C++" void *rawmemchr (void *__s, int __c) throw () __asm ("rawmemchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern "C++" const void *rawmemchr (const void *__s, int __c) throw () __asm ("rawmemchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern "C++" void *memrchr (void *__s, int __c, size_t __n) throw () __asm ("memrchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern "C++" const void *memrchr (const void *__s, int __c, size_t __n) throw () __asm ("memrchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strcpy (char *__restrict __dest, const char *__restrict __src) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (2))); # 166 "/usr/include/string.h" 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) throw () __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) throw () __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) throw () __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 extern "C++" { extern char *strchr (char *__s, int __c) throw () __asm ("strchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern const char *strchr (const char *__s, int __c) throw () __asm ("strchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 233 "/usr/include/string.h" 3 4 } extern "C++" { extern char *strrchr (char *__s, int __c) throw () __asm ("strrchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern const char *strrchr (const char *__s, int __c) throw () __asm ("strrchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 260 "/usr/include/string.h" 3 4 } extern "C++" char *strchrnul (char *__s, int __c) throw () __asm ("strchrnul") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern "C++" const char *strchrnul (const char *__s, int __c) throw () __asm ("strchrnul") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strcspn (const char *__s, const char *__reject) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern "C++" { extern char *strpbrk (char *__s, const char *__accept) throw () __asm ("strpbrk") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern const char *strpbrk (const char *__s, const char *__accept) throw () __asm ("strpbrk") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 312 "/usr/include/string.h" 3 4 } extern "C++" { extern char *strstr (char *__haystack, const char *__needle) throw () __asm ("strstr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern const char *strstr (const char *__haystack, const char *__needle) throw () __asm ("strstr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 339 "/usr/include/string.h" 3 4 } extern char *strtok (char *__restrict __s, const char *__restrict __delim) throw () __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) throw () __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) throw () __attribute__ ((__nonnull__ (2, 3))); extern "C++" char *strcasestr (char *__haystack, const char *__needle) throw () __asm ("strcasestr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern "C++" const char *strcasestr (const char *__haystack, const char *__needle) throw () __asm ("strcasestr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 381 "/usr/include/string.h" 3 4 extern void *memmem (const void *__haystack, size_t __haystacklen, const void *__needle, size_t __needlelen) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 3))); extern void *__mempcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *mempcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern size_t strlen (const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) throw (); # 437 "/usr/include/string.h" 3 4 extern char *strerror_r (int __errnum, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))) ; extern char *strerror_l (int __errnum, __locale_t __l) throw (); extern void __bzero (void *__s, size_t __n) throw () __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) throw () __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern "C++" { extern char *index (char *__s, int __c) throw () __asm ("index") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern const char *index (const char *__s, int __c) throw () __asm ("index") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 486 "/usr/include/string.h" 3 4 } extern "C++" { extern char *rindex (char *__s, int __c) throw () __asm ("rindex") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern const char *rindex (const char *__s, int __c) throw () __asm ("rindex") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 514 "/usr/include/string.h" 3 4 } extern int ffs (int __i) throw () __attribute__ ((__const__)); extern int ffsl (long int __l) throw () __attribute__ ((__const__)); __extension__ extern int ffsll (long long int __ll) throw () __attribute__ ((__const__)); extern int strcasecmp (const char *__s1, const char *__s2) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcasecmp_l (const char *__s1, const char *__s2, __locale_t __loc) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (const char *__s1, const char *__s2, size_t __n, __locale_t __loc) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) throw (); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern int strverscmp (const char *__s1, const char *__s2) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strfry (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern void *memfrob (void *__s, size_t __n) throw () __attribute__ ((__nonnull__ (1))); extern "C++" char *basename (char *__filename) throw () __asm ("basename") __attribute__ ((__nonnull__ (1))); extern "C++" const char *basename (const char *__filename) throw () __asm ("basename") __attribute__ ((__nonnull__ (1))); # 643 "/usr/include/string.h" 3 4 } # 66 "/usr/include/openssl/pqueue.h" 2 3 4 extern "C" { typedef struct _pqueue *pqueue; typedef struct _pitem { unsigned char priority[8]; void *data; struct _pitem *next; } pitem; typedef struct _pitem *piterator; pitem *pitem_new(unsigned char *prio64be, void *data); void pitem_free(pitem *item); pqueue pqueue_new(void); void pqueue_free(pqueue pq); pitem *pqueue_insert(pqueue pq, pitem *item); pitem *pqueue_peek(pqueue pq); pitem *pqueue_pop(pqueue pq); pitem *pqueue_find(pqueue pq, unsigned char *prio64be); pitem *pqueue_iterator(pqueue pq); pitem *pqueue_next(piterator *iter); void pqueue_print(pqueue pq); int pqueue_size(pqueue pq); } # 65 "/usr/include/openssl/dtls1.h" 2 3 4 # 78 "/usr/include/openssl/dtls1.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 27 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 28 "/usr/include/sys/time.h" 2 3 4 # 37 "/usr/include/sys/time.h" 3 4 extern "C" { # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 71 "/usr/include/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) throw () __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) throw (); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) throw (); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) throw (); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) throw (); extern int utimes (const char *__file, const struct timeval __tvp[2]) throw () __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) throw () __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) throw (); extern int futimesat (int __fd, const char *__file, const struct timeval __tvp[2]) throw (); # 189 "/usr/include/sys/time.h" 3 4 } # 79 "/usr/include/openssl/dtls1.h" 2 3 4 extern "C" { # 123 "/usr/include/openssl/dtls1.h" 3 4 typedef struct dtls1_bitmap_st { unsigned long map; unsigned char max_seq_num[8]; } DTLS1_BITMAP; struct dtls1_retransmit_state { EVP_CIPHER_CTX *enc_write_ctx; EVP_MD_CTX *write_hash; COMP_CTX *compress; SSL_SESSION *session; unsigned short epoch; }; struct hm_header_st { unsigned char type; unsigned long msg_len; unsigned short seq; unsigned long frag_off; unsigned long frag_len; unsigned int is_ccs; struct dtls1_retransmit_state saved_retransmit_state; }; struct ccs_header_st { unsigned char type; unsigned short seq; }; struct dtls1_timeout_st { unsigned int read_timeouts; unsigned int write_timeouts; unsigned int num_alerts; }; typedef struct record_pqueue_st { unsigned short epoch; pqueue q; } record_pqueue; typedef struct hm_fragment_st { struct hm_header_st msg_header; unsigned char *fragment; unsigned char *reassembly; } hm_fragment; typedef struct dtls1_state_st { unsigned int send_cookie; unsigned char cookie[256]; unsigned char rcvd_cookie[256]; unsigned int cookie_len; unsigned short r_epoch; unsigned short w_epoch; DTLS1_BITMAP bitmap; DTLS1_BITMAP next_bitmap; unsigned short handshake_write_seq; unsigned short next_handshake_write_seq; unsigned short handshake_read_seq; unsigned char last_write_sequence[8]; record_pqueue unprocessed_rcds; record_pqueue processed_rcds; pqueue buffered_messages; pqueue sent_messages; record_pqueue buffered_app_data; unsigned int mtu; struct hm_header_st w_msg_hdr; struct hm_header_st r_msg_hdr; struct dtls1_timeout_st timeout; struct timeval next_timeout; unsigned short timeout_duration; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[12]; unsigned int handshake_fragment_len; unsigned int retransmitting; unsigned int change_cipher_spec_ok; unsigned int listen; unsigned int link_mtu; # 273 "/usr/include/openssl/dtls1.h" 3 4 } DTLS1_STATE; typedef struct dtls1_record_data_st { unsigned char *packet; unsigned int packet_length; SSL3_BUFFER rbuf; SSL3_RECORD rrec; } DTLS1_RECORD_DATA; # 295 "/usr/include/openssl/dtls1.h" 3 4 } # 1350 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/ssl23.h" 1 3 4 # 63 "/usr/include/openssl/ssl23.h" 3 4 extern "C" { # 80 "/usr/include/openssl/ssl23.h" 3 4 } # 1351 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/srtp.h" 1 3 4 # 124 "/usr/include/openssl/srtp.h" 3 4 extern "C" { # 137 "/usr/include/openssl/srtp.h" 3 4 int SSL_CTX_set_tlsext_use_srtp(SSL_CTX *ctx, const char *profiles); int SSL_set_tlsext_use_srtp(SSL *ctx, const char *profiles); SRTP_PROTECTION_PROFILE *SSL_get_selected_srtp_profile(SSL *s); struct stack_st_SRTP_PROTECTION_PROFILE *SSL_get_srtp_profiles(SSL *ssl); SRTP_PROTECTION_PROFILE *SSL_get_selected_srtp_profile(SSL *s); } # 1352 "/usr/include/openssl/ssl.h" 2 3 4 extern "C" { # 1412 "/usr/include/openssl/ssl.h" 3 4 size_t SSL_get_finished(const SSL *s, void *buf, size_t count); size_t SSL_get_peer_finished(const SSL *s, void *buf, size_t count); # 1450 "/usr/include/openssl/ssl.h" 3 4 SSL_SESSION *PEM_read_bio_SSL_SESSION(BIO *bp, SSL_SESSION **x, pem_password_cb *cb, void *u); SSL_SESSION *PEM_read_SSL_SESSION(FILE *fp, SSL_SESSION **x, pem_password_cb *cb, void *u); int PEM_write_bio_SSL_SESSION(BIO *bp, SSL_SESSION *x); int PEM_write_SSL_SESSION(FILE *fp, SSL_SESSION *x); # 1646 "/usr/include/openssl/ssl.h" 3 4 BIO_METHOD *BIO_f_ssl(void); BIO *BIO_new_ssl(SSL_CTX *ctx,int client); BIO *BIO_new_ssl_connect(SSL_CTX *ctx); BIO *BIO_new_buffer_ssl_connect(SSL_CTX *ctx); int BIO_ssl_copy_session_id(BIO *to,BIO *from); void BIO_ssl_shutdown(BIO *ssl_bio); int SSL_CTX_set_cipher_list(SSL_CTX *,const char *str); SSL_CTX *SSL_CTX_new(const SSL_METHOD *meth); void SSL_CTX_free(SSL_CTX *); long SSL_CTX_set_timeout(SSL_CTX *ctx,long t); long SSL_CTX_get_timeout(const SSL_CTX *ctx); X509_STORE *SSL_CTX_get_cert_store(const SSL_CTX *); void SSL_CTX_set_cert_store(SSL_CTX *,X509_STORE *); int SSL_want(const SSL *s); int SSL_clear(SSL *s); void SSL_CTX_flush_sessions(SSL_CTX *ctx,long tm); const SSL_CIPHER *SSL_get_current_cipher(const SSL *s); int SSL_CIPHER_get_bits(const SSL_CIPHER *c,int *alg_bits); char * SSL_CIPHER_get_version(const SSL_CIPHER *c); const char * SSL_CIPHER_get_name(const SSL_CIPHER *c); unsigned long SSL_CIPHER_get_id(const SSL_CIPHER *c); int SSL_get_fd(const SSL *s); int SSL_get_rfd(const SSL *s); int SSL_get_wfd(const SSL *s); const char * SSL_get_cipher_list(const SSL *s,int n); char * SSL_get_shared_ciphers(const SSL *s, char *buf, int len); int SSL_get_read_ahead(const SSL * s); int SSL_pending(const SSL *s); int SSL_set_fd(SSL *s, int fd); int SSL_set_rfd(SSL *s, int fd); int SSL_set_wfd(SSL *s, int fd); void SSL_set_bio(SSL *s, BIO *rbio,BIO *wbio); BIO * SSL_get_rbio(const SSL *s); BIO * SSL_get_wbio(const SSL *s); int SSL_set_cipher_list(SSL *s, const char *str); void SSL_set_read_ahead(SSL *s, int yes); int SSL_get_verify_mode(const SSL *s); int SSL_get_verify_depth(const SSL *s); int (*SSL_get_verify_callback(const SSL *s))(int,X509_STORE_CTX *); void SSL_set_verify(SSL *s, int mode, int (*callback)(int ok,X509_STORE_CTX *ctx)); void SSL_set_verify_depth(SSL *s, int depth); int SSL_use_RSAPrivateKey(SSL *ssl, RSA *rsa); int SSL_use_RSAPrivateKey_ASN1(SSL *ssl, unsigned char *d, long len); int SSL_use_PrivateKey(SSL *ssl, EVP_PKEY *pkey); int SSL_use_PrivateKey_ASN1(int pk,SSL *ssl, const unsigned char *d, long len); int SSL_use_certificate(SSL *ssl, X509 *x); int SSL_use_certificate_ASN1(SSL *ssl, const unsigned char *d, int len); int SSL_use_RSAPrivateKey_file(SSL *ssl, const char *file, int type); int SSL_use_PrivateKey_file(SSL *ssl, const char *file, int type); int SSL_use_certificate_file(SSL *ssl, const char *file, int type); int SSL_CTX_use_RSAPrivateKey_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_PrivateKey_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_certificate_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_certificate_chain_file(SSL_CTX *ctx, const char *file); struct stack_st_X509_NAME *SSL_load_client_CA_file(const char *file); int SSL_add_file_cert_subjects_to_stack(struct stack_st_X509_NAME *stackCAs, const char *file); int SSL_add_dir_cert_subjects_to_stack(struct stack_st_X509_NAME *stackCAs, const char *dir); void SSL_load_error_strings(void ); const char *SSL_state_string(const SSL *s); const char *SSL_rstate_string(const SSL *s); const char *SSL_state_string_long(const SSL *s); const char *SSL_rstate_string_long(const SSL *s); long SSL_SESSION_get_time(const SSL_SESSION *s); long SSL_SESSION_set_time(SSL_SESSION *s, long t); long SSL_SESSION_get_timeout(const SSL_SESSION *s); long SSL_SESSION_set_timeout(SSL_SESSION *s, long t); void SSL_copy_session_id(SSL *to,const SSL *from); X509 *SSL_SESSION_get0_peer(SSL_SESSION *s); int SSL_SESSION_set1_id_context(SSL_SESSION *s,const unsigned char *sid_ctx, unsigned int sid_ctx_len); SSL_SESSION *SSL_SESSION_new(void); const unsigned char *SSL_SESSION_get_id(const SSL_SESSION *s, unsigned int *len); unsigned int SSL_SESSION_get_compress_id(const SSL_SESSION *s); int SSL_SESSION_print_fp(FILE *fp,const SSL_SESSION *ses); int SSL_SESSION_print(BIO *fp,const SSL_SESSION *ses); void SSL_SESSION_free(SSL_SESSION *ses); int i2d_SSL_SESSION(SSL_SESSION *in,unsigned char **pp); int SSL_set_session(SSL *to, SSL_SESSION *session); int SSL_CTX_add_session(SSL_CTX *s, SSL_SESSION *c); int SSL_CTX_remove_session(SSL_CTX *,SSL_SESSION *c); int SSL_CTX_set_generate_session_id(SSL_CTX *, GEN_SESSION_CB); int SSL_set_generate_session_id(SSL *, GEN_SESSION_CB); int SSL_has_matching_session_id(const SSL *ssl, const unsigned char *id, unsigned int id_len); SSL_SESSION *d2i_SSL_SESSION(SSL_SESSION **a,const unsigned char **pp, long length); X509 * SSL_get_peer_certificate(const SSL *s); struct stack_st_X509 *SSL_get_peer_cert_chain(const SSL *s); int SSL_CTX_get_verify_mode(const SSL_CTX *ctx); int SSL_CTX_get_verify_depth(const SSL_CTX *ctx); int (*SSL_CTX_get_verify_callback(const SSL_CTX *ctx))(int,X509_STORE_CTX *); void SSL_CTX_set_verify(SSL_CTX *ctx,int mode, int (*callback)(int, X509_STORE_CTX *)); void SSL_CTX_set_verify_depth(SSL_CTX *ctx,int depth); void SSL_CTX_set_cert_verify_callback(SSL_CTX *ctx, int (*cb)(X509_STORE_CTX *,void *), void *arg); int SSL_CTX_use_RSAPrivateKey(SSL_CTX *ctx, RSA *rsa); int SSL_CTX_use_RSAPrivateKey_ASN1(SSL_CTX *ctx, const unsigned char *d, long len); int SSL_CTX_use_PrivateKey(SSL_CTX *ctx, EVP_PKEY *pkey); int SSL_CTX_use_PrivateKey_ASN1(int pk,SSL_CTX *ctx, const unsigned char *d, long len); int SSL_CTX_use_certificate(SSL_CTX *ctx, X509 *x); int SSL_CTX_use_certificate_ASN1(SSL_CTX *ctx, int len, const unsigned char *d); void SSL_CTX_set_default_passwd_cb(SSL_CTX *ctx, pem_password_cb *cb); void SSL_CTX_set_default_passwd_cb_userdata(SSL_CTX *ctx, void *u); int SSL_CTX_check_private_key(const SSL_CTX *ctx); int SSL_check_private_key(const SSL *ctx); int SSL_CTX_set_session_id_context(SSL_CTX *ctx,const unsigned char *sid_ctx, unsigned int sid_ctx_len); SSL * SSL_new(SSL_CTX *ctx); int SSL_set_session_id_context(SSL *ssl,const unsigned char *sid_ctx, unsigned int sid_ctx_len); int SSL_CTX_set_purpose(SSL_CTX *s, int purpose); int SSL_set_purpose(SSL *s, int purpose); int SSL_CTX_set_trust(SSL_CTX *s, int trust); int SSL_set_trust(SSL *s, int trust); int SSL_CTX_set1_param(SSL_CTX *ctx, X509_VERIFY_PARAM *vpm); int SSL_set1_param(SSL *ssl, X509_VERIFY_PARAM *vpm); void SSL_free(SSL *ssl); int SSL_accept(SSL *ssl); int SSL_connect(SSL *ssl); int SSL_read(SSL *ssl,void *buf,int num); int SSL_peek(SSL *ssl,void *buf,int num); int SSL_write(SSL *ssl,const void *buf,int num); long SSL_ctrl(SSL *ssl,int cmd, long larg, void *parg); long SSL_callback_ctrl(SSL *, int, void (*)(void)); long SSL_CTX_ctrl(SSL_CTX *ctx,int cmd, long larg, void *parg); long SSL_CTX_callback_ctrl(SSL_CTX *, int, void (*)(void)); int SSL_get_error(const SSL *s,int ret_code); const char *SSL_get_version(const SSL *s); int SSL_CTX_set_ssl_version(SSL_CTX *ctx, const SSL_METHOD *meth); const SSL_METHOD *SSLv2_method(void); const SSL_METHOD *SSLv2_server_method(void); const SSL_METHOD *SSLv2_client_method(void); const SSL_METHOD *SSLv3_method(void); const SSL_METHOD *SSLv3_server_method(void); const SSL_METHOD *SSLv3_client_method(void); const SSL_METHOD *SSLv23_method(void); const SSL_METHOD *SSLv23_server_method(void); const SSL_METHOD *SSLv23_client_method(void); const SSL_METHOD *TLSv1_method(void); const SSL_METHOD *TLSv1_server_method(void); const SSL_METHOD *TLSv1_client_method(void); const SSL_METHOD *TLSv1_1_method(void); const SSL_METHOD *TLSv1_1_server_method(void); const SSL_METHOD *TLSv1_1_client_method(void); const SSL_METHOD *TLSv1_2_method(void); const SSL_METHOD *TLSv1_2_server_method(void); const SSL_METHOD *TLSv1_2_client_method(void); const SSL_METHOD *DTLSv1_method(void); const SSL_METHOD *DTLSv1_server_method(void); const SSL_METHOD *DTLSv1_client_method(void); struct stack_st_SSL_CIPHER *SSL_get_ciphers(const SSL *s); int SSL_do_handshake(SSL *s); int SSL_renegotiate(SSL *s); int SSL_renegotiate_abbreviated(SSL *s); int SSL_renegotiate_pending(SSL *s); int SSL_shutdown(SSL *s); const SSL_METHOD *SSL_get_ssl_method(SSL *s); int SSL_set_ssl_method(SSL *s, const SSL_METHOD *method); const char *SSL_alert_type_string_long(int value); const char *SSL_alert_type_string(int value); const char *SSL_alert_desc_string_long(int value); const char *SSL_alert_desc_string(int value); void SSL_set_client_CA_list(SSL *s, struct stack_st_X509_NAME *name_list); void SSL_CTX_set_client_CA_list(SSL_CTX *ctx, struct stack_st_X509_NAME *name_list); struct stack_st_X509_NAME *SSL_get_client_CA_list(const SSL *s); struct stack_st_X509_NAME *SSL_CTX_get_client_CA_list(const SSL_CTX *s); int SSL_add_client_CA(SSL *ssl,X509 *x); int SSL_CTX_add_client_CA(SSL_CTX *ctx,X509 *x); void SSL_set_connect_state(SSL *s); void SSL_set_accept_state(SSL *s); long SSL_get_default_timeout(const SSL *s); int SSL_library_init(void ); char *SSL_CIPHER_description(const SSL_CIPHER *,char *buf,int size); struct stack_st_X509_NAME *SSL_dup_CA_list(struct stack_st_X509_NAME *sk); SSL *SSL_dup(SSL *ssl); X509 *SSL_get_certificate(const SSL *ssl); struct evp_pkey_st *SSL_get_privatekey(SSL *ssl); void SSL_CTX_set_quiet_shutdown(SSL_CTX *ctx,int mode); int SSL_CTX_get_quiet_shutdown(const SSL_CTX *ctx); void SSL_set_quiet_shutdown(SSL *ssl,int mode); int SSL_get_quiet_shutdown(const SSL *ssl); void SSL_set_shutdown(SSL *ssl,int mode); int SSL_get_shutdown(const SSL *ssl); int SSL_version(const SSL *ssl); int SSL_CTX_set_default_verify_paths(SSL_CTX *ctx); int SSL_CTX_load_verify_locations(SSL_CTX *ctx, const char *CAfile, const char *CApath); SSL_SESSION *SSL_get_session(const SSL *ssl); SSL_SESSION *SSL_get1_session(SSL *ssl); SSL_CTX *SSL_get_SSL_CTX(const SSL *ssl); SSL_CTX *SSL_set_SSL_CTX(SSL *ssl, SSL_CTX* ctx); void SSL_set_info_callback(SSL *ssl, void (*cb)(const SSL *ssl,int type,int val)); void (*SSL_get_info_callback(const SSL *ssl))(const SSL *ssl,int type,int val); int SSL_state(const SSL *ssl); void SSL_set_state(SSL *ssl, int state); void SSL_set_verify_result(SSL *ssl,long v); long SSL_get_verify_result(const SSL *ssl); int SSL_set_ex_data(SSL *ssl,int idx,void *data); void *SSL_get_ex_data(const SSL *ssl,int idx); int SSL_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_SESSION_set_ex_data(SSL_SESSION *ss,int idx,void *data); void *SSL_SESSION_get_ex_data(const SSL_SESSION *ss,int idx); int SSL_SESSION_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_CTX_set_ex_data(SSL_CTX *ssl,int idx,void *data); void *SSL_CTX_get_ex_data(const SSL_CTX *ssl,int idx); int SSL_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_get_ex_data_X509_STORE_CTX_idx(void ); # 1967 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_set_tmp_rsa_callback(SSL_CTX *ctx, RSA *(*cb)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_rsa_callback(SSL *ssl, RSA *(*cb)(SSL *ssl,int is_export, int keylength)); void SSL_CTX_set_tmp_dh_callback(SSL_CTX *ctx, DH *(*dh)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_dh_callback(SSL *ssl, DH *(*dh)(SSL *ssl,int is_export, int keylength)); void SSL_CTX_set_tmp_ecdh_callback(SSL_CTX *ctx, EC_KEY *(*ecdh)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_ecdh_callback(SSL *ssl, EC_KEY *(*ecdh)(SSL *ssl,int is_export, int keylength)); const COMP_METHOD *SSL_get_current_compression(SSL *s); const COMP_METHOD *SSL_get_current_expansion(SSL *s); const char *SSL_COMP_get_name(const COMP_METHOD *comp); struct stack_st_SSL_COMP *SSL_COMP_get_compression_methods(void); int SSL_COMP_add_compression_method(int id,COMP_METHOD *cm); # 2007 "/usr/include/openssl/ssl.h" 3 4 int SSL_set_session_ticket_ext(SSL *s, void *ext_data, int ext_len); int SSL_set_session_ticket_ext_cb(SSL *s, tls_session_ticket_ext_cb_fn cb, void *arg); int SSL_set_session_secret_cb(SSL *s, tls_session_secret_cb_fn tls_session_secret_cb, void *arg); void SSL_set_debug(SSL *s, int debug); int SSL_cache_hit(SSL *s); # 2026 "/usr/include/openssl/ssl.h" 3 4 void ERR_load_SSL_strings(void); # 2557 "/usr/include/openssl/ssl.h" 3 4 } # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['openssl/ssl.h'] in ['/usr/local/include'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.ssl(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:731) TESTING: checkSharedLibrary from config.packages.ssl(config/BuildSystem/config/package.py:731) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.hwloc(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:672) TESTING: configureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:672) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional hwloc Checking for library in Compiler specific search HWLOC: [] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library [] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.cc:(.text.startup+0x5): undefined reference to `hwloc_topology_init' collect2: error: ld returned 1 exit status Popping language Cxx Checking for library in Compiler specific search HWLOC: ['libhwloc.a'] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a'] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lhwloc -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language Cxx Checking for library in Compiler specific search HWLOC: ['libhwloc.a', 'libxml2.a'] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a', 'libxml2.a'] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -lhwloc -lxml2 -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language Cxx Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a'] Contents: ['bin', 'sbin', 'lib64', 'libexec', 'etc', 'include', 'share', 'src', 'games', 'lib'] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a'] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language Cxx Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a', 'libxml2.a'] Contents: ['bin', 'sbin', 'lib64', 'libexec', 'etc', 'include', 'share', 'src', 'games', 'lib'] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a', 'libxml2.a'] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -lxml2 -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language Cxx Checking for library in Package specific search directory HWLOC: ['/usr/local/lib64/libhwloc.a'] Contents: ['bin', 'sbin', 'lib64', 'libexec', 'etc', 'include', 'share', 'src', 'games', 'lib'] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib64/libhwloc.a'] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lhwloc -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language Cxx Checking for library in Package specific search directory HWLOC: ['/usr/local/lib64/libhwloc.a', 'libxml2.a'] Contents: ['bin', 'sbin', 'lib64', 'libexec', 'etc', 'include', 'share', 'src', 'games', 'lib'] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib64/libhwloc.a', 'libxml2.a'] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lhwloc -lxml2 -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -lhwloc collect2: error: ld returned 1 exit status Popping language Cxx HWLOC: SearchDir DirPath not found.. skipping: /opt/local ================================================================================ TEST checkSharedLibrary from config.packages.hwloc(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:731) TESTING: checkSharedLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:731) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.X(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Triangle(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Not a clone of PETSc or no Fortran, don't need Sowing ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.hdf5(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/hdf5.py:46) TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:46) ================================================================================== Checking for a functional hdf5 Checking for library in User specified HDF5 libraries: ['/usr/lib/libhdf5.so'] Contents: ['local', 'bin', 'sbin', 'lib64', 'libexec', 'tmp', 'include', 'share', 'src', 'games', 'lib'] ================================================================================ TEST check from config.libraries(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [H5T_init] in library ['/usr/lib/libhdf5.so'] ['libm.a'] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char H5T_init(); static void _check_H5T_init() { H5T_init(); } #ifdef __cplusplus } #endif int main() { _check_H5T_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -Wl,-rpath,/usr/lib -L/usr/lib -lhdf5 -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBHDF5" to "1" Popping language Cxx Checking for headers User specified HDF5 libraries: ['/usr/include', '/usr/local/include'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['hdf5.h'] in ['/usr/include', '/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/include', '/usr/local/include', '/usr/local/include'] Executing: mpic++ -E -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.headers -I/usr/include -I/usr/local/include -I/usr/local/include /tmp/petsc-F9l5hH/config.headers/conftest.cc stdout: # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" # 1 "/tmp/petsc-F9l5hH/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/tmp/petsc-F9l5hH/config.headers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 # 1 "/usr/include/hdf5.h" 1 3 4 # 24 "/usr/include/hdf5.h" 3 4 # 1 "/usr/include/H5public.h" 1 3 4 # 31 "/usr/include/H5public.h" 3 4 # 1 "/usr/include/H5pubconf-64.h" 1 3 4 # 32 "/usr/include/H5public.h" 2 3 4 # 1 "/usr/include/H5version.h" 1 3 4 # 35 "/usr/include/H5public.h" 2 3 4 # 1 "/usr/include/features.h" 1 3 4 # 365 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 402 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 403 "/usr/include/sys/cdefs.h" 2 3 4 # 366 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 38 "/usr/include/H5public.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 4 # 27 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 122 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 1 "/usr/include/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/bits/byteswap.h" 2 3 4 # 44 "/usr/include/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 30 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 22 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 23 "/usr/include/bits/select.h" 2 3 4 # 31 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 22 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 30 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/sys/select.h" 2 3 4 # 54 "/usr/include/sys/select.h" 3 4 typedef long int __fd_mask; # 64 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/sys/select.h" 3 4 extern "C" { # 106 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/sys/select.h" 3 4 } # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 58 "/usr/include/sys/sysmacros.h" 3 4 } # 223 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/usr/include/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 } # 41 "/usr/include/H5public.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 143 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 38 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 2 3 4 # 161 "/usr/include/bits/posix1_lim.h" 2 3 4 # 144 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 148 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/xopen_lim.h" 1 3 4 # 33 "/usr/include/bits/xopen_lim.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 34 "/usr/include/bits/xopen_lim.h" 2 3 4 # 152 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h" 2 3 4 # 44 "/usr/include/H5public.h" 2 3 4 # 55 "/usr/include/H5public.h" 3 4 # 1 "/usr/include/inttypes.h" 1 3 4 # 27 "/usr/include/inttypes.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 48 "/usr/include/stdint.h" 3 4 typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdint.h" 2 3 4 # 28 "/usr/include/inttypes.h" 2 3 4 # 266 "/usr/include/inttypes.h" 3 4 extern "C" { typedef struct { long int quot; long int rem; } imaxdiv_t; # 290 "/usr/include/inttypes.h" 3 4 extern intmax_t imaxabs (intmax_t __n) throw () __attribute__ ((__const__)); extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom) throw () __attribute__ ((__const__)); extern intmax_t strtoimax (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw (); extern uintmax_t strtoumax (const char *__restrict __nptr, char ** __restrict __endptr, int __base) throw (); extern intmax_t wcstoimax (const wchar_t *__restrict __nptr, wchar_t **__restrict __endptr, int __base) throw (); extern uintmax_t wcstoumax (const wchar_t *__restrict __nptr, wchar_t ** __restrict __endptr, int __base) throw (); # 432 "/usr/include/inttypes.h" 3 4 } # 56 "/usr/include/H5public.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 59 "/usr/include/H5public.h" 2 3 4 # 69 "/usr/include/H5public.h" 3 4 # 1 "/usr/include/H5api_adpt.h" 1 3 4 # 70 "/usr/include/H5public.h" 2 3 4 extern "C" { # 126 "/usr/include/H5public.h" 3 4 typedef int herr_t; # 144 "/usr/include/H5public.h" 3 4 typedef unsigned int hbool_t; typedef int htri_t; # 170 "/usr/include/H5public.h" 3 4 # 170 "/usr/include/H5public.h" 3 4 #pragma GCC diagnostic push # 170 "/usr/include/H5public.h" 3 4 # 170 "/usr/include/H5public.h" 3 4 #pragma GCC diagnostic ignored "-Wlong-long" # 170 "/usr/include/H5public.h" 3 4 typedef unsigned long long hsize_t; typedef signed long long hssize_t; # 173 "/usr/include/H5public.h" 3 4 #pragma GCC diagnostic pop # 173 "/usr/include/H5public.h" 3 4 # 184 "/usr/include/H5public.h" 3 4 typedef uint64_t haddr_t; # 289 "/usr/include/H5public.h" 3 4 typedef enum { H5_ITER_UNKNOWN = -1, H5_ITER_INC, H5_ITER_DEC, H5_ITER_NATIVE, H5_ITER_N } H5_iter_order_t; # 310 "/usr/include/H5public.h" 3 4 typedef enum H5_index_t { H5_INDEX_UNKNOWN = -1, H5_INDEX_NAME, H5_INDEX_CRT_ORDER, H5_INDEX_N } H5_index_t; typedef struct H5_ih_info_t { hsize_t index_size; hsize_t heap_size; } H5_ih_info_t; herr_t H5open(void); herr_t H5close(void); herr_t H5dont_atexit(void); herr_t H5garbage_collect(void); herr_t H5set_free_list_limits (int reg_global_lim, int reg_list_lim, int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim); herr_t H5get_libversion(unsigned *majnum, unsigned *minnum, unsigned *relnum); herr_t H5check_version(unsigned majnum, unsigned minnum, unsigned relnum); herr_t H5free_memory(void *mem); } # 25 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5Apublic.h" 1 3 4 # 23 "/usr/include/H5Apublic.h" 3 4 # 1 "/usr/include/H5Ipublic.h" 1 3 4 # 36 "/usr/include/H5Ipublic.h" 3 4 typedef enum H5I_type_t { H5I_UNINIT = (-2), H5I_BADID = (-1), H5I_FILE = 1, H5I_GROUP, H5I_DATATYPE, H5I_DATASPACE, H5I_DATASET, H5I_ATTR, H5I_REFERENCE, H5I_VFL, H5I_GENPROP_CLS, H5I_GENPROP_LST, H5I_ERROR_CLASS, H5I_ERROR_MSG, H5I_ERROR_STACK, H5I_NTYPES } H5I_type_t; typedef int hid_t; # 69 "/usr/include/H5Ipublic.h" 3 4 typedef herr_t (*H5I_free_t)(void*); typedef int (*H5I_search_func_t)(void *obj, hid_t id, void *key); extern "C" { hid_t H5Iregister(H5I_type_t type, const void *object); void *H5Iobject_verify(hid_t id, H5I_type_t id_type); void *H5Iremove_verify(hid_t id, H5I_type_t id_type); H5I_type_t H5Iget_type(hid_t id); hid_t H5Iget_file_id(hid_t id); ssize_t H5Iget_name(hid_t id, char *name , size_t size); int H5Iinc_ref(hid_t id); int H5Idec_ref(hid_t id); int H5Iget_ref(hid_t id); H5I_type_t H5Iregister_type(size_t hash_size, unsigned reserved, H5I_free_t free_func); herr_t H5Iclear_type(H5I_type_t type, hbool_t force); herr_t H5Idestroy_type(H5I_type_t type); int H5Iinc_type_ref(H5I_type_t type); int H5Idec_type_ref(H5I_type_t type); int H5Iget_type_ref(H5I_type_t type); void *H5Isearch(H5I_type_t type, H5I_search_func_t func, void *key); herr_t H5Inmembers(H5I_type_t type, hsize_t *num_members); htri_t H5Itype_exists(H5I_type_t type); htri_t H5Iis_valid(hid_t id); } # 24 "/usr/include/H5Apublic.h" 2 3 4 # 1 "/usr/include/H5Opublic.h" 1 3 4 # 33 "/usr/include/H5Opublic.h" 3 4 # 1 "/usr/include/H5Lpublic.h" 1 3 4 # 32 "/usr/include/H5Lpublic.h" 3 4 # 1 "/usr/include/H5Tpublic.h" 1 3 4 # 30 "/usr/include/H5Tpublic.h" 3 4 typedef enum H5T_class_t { H5T_NO_CLASS = -1, H5T_INTEGER = 0, H5T_FLOAT = 1, H5T_TIME = 2, H5T_STRING = 3, H5T_BITFIELD = 4, H5T_OPAQUE = 5, H5T_COMPOUND = 6, H5T_REFERENCE = 7, H5T_ENUM = 8, H5T_VLEN = 9, H5T_ARRAY = 10, H5T_NCLASSES } H5T_class_t; typedef enum H5T_order_t { H5T_ORDER_ERROR = -1, H5T_ORDER_LE = 0, H5T_ORDER_BE = 1, H5T_ORDER_VAX = 2, H5T_ORDER_MIXED = 3, H5T_ORDER_NONE = 4 } H5T_order_t; typedef enum H5T_sign_t { H5T_SGN_ERROR = -1, H5T_SGN_NONE = 0, H5T_SGN_2 = 1, H5T_NSGN = 2 } H5T_sign_t; typedef enum H5T_norm_t { H5T_NORM_ERROR = -1, H5T_NORM_IMPLIED = 0, H5T_NORM_MSBSET = 1, H5T_NORM_NONE = 2 } H5T_norm_t; typedef enum H5T_cset_t { H5T_CSET_ERROR = -1, H5T_CSET_ASCII = 0, H5T_CSET_UTF8 = 1, H5T_CSET_RESERVED_2 = 2, H5T_CSET_RESERVED_3 = 3, H5T_CSET_RESERVED_4 = 4, H5T_CSET_RESERVED_5 = 5, H5T_CSET_RESERVED_6 = 6, H5T_CSET_RESERVED_7 = 7, H5T_CSET_RESERVED_8 = 8, H5T_CSET_RESERVED_9 = 9, H5T_CSET_RESERVED_10 = 10, H5T_CSET_RESERVED_11 = 11, H5T_CSET_RESERVED_12 = 12, H5T_CSET_RESERVED_13 = 13, H5T_CSET_RESERVED_14 = 14, H5T_CSET_RESERVED_15 = 15 } H5T_cset_t; typedef enum H5T_str_t { H5T_STR_ERROR = -1, H5T_STR_NULLTERM = 0, H5T_STR_NULLPAD = 1, H5T_STR_SPACEPAD = 2, H5T_STR_RESERVED_3 = 3, H5T_STR_RESERVED_4 = 4, H5T_STR_RESERVED_5 = 5, H5T_STR_RESERVED_6 = 6, H5T_STR_RESERVED_7 = 7, H5T_STR_RESERVED_8 = 8, H5T_STR_RESERVED_9 = 9, H5T_STR_RESERVED_10 = 10, H5T_STR_RESERVED_11 = 11, H5T_STR_RESERVED_12 = 12, H5T_STR_RESERVED_13 = 13, H5T_STR_RESERVED_14 = 14, H5T_STR_RESERVED_15 = 15 } H5T_str_t; typedef enum H5T_pad_t { H5T_PAD_ERROR = -1, H5T_PAD_ZERO = 0, H5T_PAD_ONE = 1, H5T_PAD_BACKGROUND = 2, H5T_NPAD = 3 } H5T_pad_t; typedef enum H5T_cmd_t { H5T_CONV_INIT = 0, H5T_CONV_CONV = 1, H5T_CONV_FREE = 2 } H5T_cmd_t; typedef enum H5T_bkg_t { H5T_BKG_NO = 0, H5T_BKG_TEMP = 1, H5T_BKG_YES = 2 } H5T_bkg_t; typedef struct H5T_cdata_t { H5T_cmd_t command; H5T_bkg_t need_bkg; hbool_t recalc; void *priv; } H5T_cdata_t; typedef enum H5T_pers_t { H5T_PERS_DONTCARE = -1, H5T_PERS_HARD = 0, H5T_PERS_SOFT = 1 } H5T_pers_t; typedef enum H5T_direction_t { H5T_DIR_DEFAULT = 0, H5T_DIR_ASCEND = 1, H5T_DIR_DESCEND = 2 } H5T_direction_t; typedef enum H5T_conv_except_t { H5T_CONV_EXCEPT_RANGE_HI = 0, H5T_CONV_EXCEPT_RANGE_LOW = 1, H5T_CONV_EXCEPT_PRECISION = 2, H5T_CONV_EXCEPT_TRUNCATE = 3, H5T_CONV_EXCEPT_PINF = 4, H5T_CONV_EXCEPT_NINF = 5, H5T_CONV_EXCEPT_NAN = 6 } H5T_conv_except_t; typedef enum H5T_conv_ret_t { H5T_CONV_ABORT = -1, H5T_CONV_UNHANDLED = 0, H5T_CONV_HANDLED = 1 } H5T_conv_ret_t; typedef struct { size_t len; void *p; } hvl_t; # 205 "/usr/include/H5Tpublic.h" 3 4 extern "C" { typedef herr_t (*H5T_conv_t) (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, size_t bkg_stride, void *buf, void *bkg, hid_t dset_xfer_plist); typedef H5T_conv_ret_t (*H5T_conv_except_func_t)(H5T_conv_except_t except_type, hid_t src_id, hid_t dst_id, void *src_buf, void *dst_buf, void *user_data); # 234 "/usr/include/H5Tpublic.h" 3 4 extern hid_t H5T_IEEE_F32BE_g; extern hid_t H5T_IEEE_F32LE_g; extern hid_t H5T_IEEE_F64BE_g; extern hid_t H5T_IEEE_F64LE_g; # 269 "/usr/include/H5Tpublic.h" 3 4 extern hid_t H5T_STD_I8BE_g; extern hid_t H5T_STD_I8LE_g; extern hid_t H5T_STD_I16BE_g; extern hid_t H5T_STD_I16LE_g; extern hid_t H5T_STD_I32BE_g; extern hid_t H5T_STD_I32LE_g; extern hid_t H5T_STD_I64BE_g; extern hid_t H5T_STD_I64LE_g; extern hid_t H5T_STD_U8BE_g; extern hid_t H5T_STD_U8LE_g; extern hid_t H5T_STD_U16BE_g; extern hid_t H5T_STD_U16LE_g; extern hid_t H5T_STD_U32BE_g; extern hid_t H5T_STD_U32LE_g; extern hid_t H5T_STD_U64BE_g; extern hid_t H5T_STD_U64LE_g; extern hid_t H5T_STD_B8BE_g; extern hid_t H5T_STD_B8LE_g; extern hid_t H5T_STD_B16BE_g; extern hid_t H5T_STD_B16LE_g; extern hid_t H5T_STD_B32BE_g; extern hid_t H5T_STD_B32LE_g; extern hid_t H5T_STD_B64BE_g; extern hid_t H5T_STD_B64LE_g; extern hid_t H5T_STD_REF_OBJ_g; extern hid_t H5T_STD_REF_DSETREG_g; # 303 "/usr/include/H5Tpublic.h" 3 4 extern hid_t H5T_UNIX_D32BE_g; extern hid_t H5T_UNIX_D32LE_g; extern hid_t H5T_UNIX_D64BE_g; extern hid_t H5T_UNIX_D64LE_g; extern hid_t H5T_C_S1_g; extern hid_t H5T_FORTRAN_S1_g; # 383 "/usr/include/H5Tpublic.h" 3 4 extern hid_t H5T_VAX_F32_g; extern hid_t H5T_VAX_F64_g; # 421 "/usr/include/H5Tpublic.h" 3 4 extern hid_t H5T_NATIVE_SCHAR_g; extern hid_t H5T_NATIVE_UCHAR_g; extern hid_t H5T_NATIVE_SHORT_g; extern hid_t H5T_NATIVE_USHORT_g; extern hid_t H5T_NATIVE_INT_g; extern hid_t H5T_NATIVE_UINT_g; extern hid_t H5T_NATIVE_LONG_g; extern hid_t H5T_NATIVE_ULONG_g; extern hid_t H5T_NATIVE_LLONG_g; extern hid_t H5T_NATIVE_ULLONG_g; extern hid_t H5T_NATIVE_FLOAT_g; extern hid_t H5T_NATIVE_DOUBLE_g; extern hid_t H5T_NATIVE_LDOUBLE_g; extern hid_t H5T_NATIVE_B8_g; extern hid_t H5T_NATIVE_B16_g; extern hid_t H5T_NATIVE_B32_g; extern hid_t H5T_NATIVE_B64_g; extern hid_t H5T_NATIVE_OPAQUE_g; extern hid_t H5T_NATIVE_HADDR_g; extern hid_t H5T_NATIVE_HSIZE_g; extern hid_t H5T_NATIVE_HSSIZE_g; extern hid_t H5T_NATIVE_HERR_g; extern hid_t H5T_NATIVE_HBOOL_g; # 454 "/usr/include/H5Tpublic.h" 3 4 extern hid_t H5T_NATIVE_INT8_g; extern hid_t H5T_NATIVE_UINT8_g; extern hid_t H5T_NATIVE_INT_LEAST8_g; extern hid_t H5T_NATIVE_UINT_LEAST8_g; extern hid_t H5T_NATIVE_INT_FAST8_g; extern hid_t H5T_NATIVE_UINT_FAST8_g; extern hid_t H5T_NATIVE_INT16_g; extern hid_t H5T_NATIVE_UINT16_g; extern hid_t H5T_NATIVE_INT_LEAST16_g; extern hid_t H5T_NATIVE_UINT_LEAST16_g; extern hid_t H5T_NATIVE_INT_FAST16_g; extern hid_t H5T_NATIVE_UINT_FAST16_g; extern hid_t H5T_NATIVE_INT32_g; extern hid_t H5T_NATIVE_UINT32_g; extern hid_t H5T_NATIVE_INT_LEAST32_g; extern hid_t H5T_NATIVE_UINT_LEAST32_g; extern hid_t H5T_NATIVE_INT_FAST32_g; extern hid_t H5T_NATIVE_UINT_FAST32_g; extern hid_t H5T_NATIVE_INT64_g; extern hid_t H5T_NATIVE_UINT64_g; extern hid_t H5T_NATIVE_INT_LEAST64_g; extern hid_t H5T_NATIVE_UINT_LEAST64_g; extern hid_t H5T_NATIVE_INT_FAST64_g; extern hid_t H5T_NATIVE_UINT_FAST64_g; hid_t H5Tcreate(H5T_class_t type, size_t size); hid_t H5Tcopy(hid_t type_id); herr_t H5Tclose(hid_t type_id); htri_t H5Tequal(hid_t type1_id, hid_t type2_id); herr_t H5Tlock(hid_t type_id); herr_t H5Tcommit2(hid_t loc_id, const char *name, hid_t type_id, hid_t lcpl_id, hid_t tcpl_id, hid_t tapl_id); hid_t H5Topen2(hid_t loc_id, const char *name, hid_t tapl_id); herr_t H5Tcommit_anon(hid_t loc_id, hid_t type_id, hid_t tcpl_id, hid_t tapl_id); hid_t H5Tget_create_plist(hid_t type_id); htri_t H5Tcommitted(hid_t type_id); herr_t H5Tencode(hid_t obj_id, void *buf, size_t *nalloc); hid_t H5Tdecode(const void *buf); herr_t H5Tinsert(hid_t parent_id, const char *name, size_t offset, hid_t member_id); herr_t H5Tpack(hid_t type_id); hid_t H5Tenum_create(hid_t base_id); herr_t H5Tenum_insert(hid_t type, const char *name, const void *value); herr_t H5Tenum_nameof(hid_t type, const void *value, char *name , size_t size); herr_t H5Tenum_valueof(hid_t type, const char *name, void *value ); hid_t H5Tvlen_create(hid_t base_id); hid_t H5Tarray_create2(hid_t base_id, unsigned ndims, const hsize_t dim[ ]); int H5Tget_array_ndims(hid_t type_id); int H5Tget_array_dims2(hid_t type_id, hsize_t dims[]); herr_t H5Tset_tag(hid_t type, const char *tag); char *H5Tget_tag(hid_t type); hid_t H5Tget_super(hid_t type); H5T_class_t H5Tget_class(hid_t type_id); htri_t H5Tdetect_class(hid_t type_id, H5T_class_t cls); size_t H5Tget_size(hid_t type_id); H5T_order_t H5Tget_order(hid_t type_id); size_t H5Tget_precision(hid_t type_id); int H5Tget_offset(hid_t type_id); herr_t H5Tget_pad(hid_t type_id, H5T_pad_t *lsb , H5T_pad_t *msb ); H5T_sign_t H5Tget_sign(hid_t type_id); herr_t H5Tget_fields(hid_t type_id, size_t *spos , size_t *epos , size_t *esize , size_t *mpos , size_t *msize ); size_t H5Tget_ebias(hid_t type_id); H5T_norm_t H5Tget_norm(hid_t type_id); H5T_pad_t H5Tget_inpad(hid_t type_id); H5T_str_t H5Tget_strpad(hid_t type_id); int H5Tget_nmembers(hid_t type_id); char *H5Tget_member_name(hid_t type_id, unsigned membno); int H5Tget_member_index(hid_t type_id, const char *name); size_t H5Tget_member_offset(hid_t type_id, unsigned membno); H5T_class_t H5Tget_member_class(hid_t type_id, unsigned membno); hid_t H5Tget_member_type(hid_t type_id, unsigned membno); herr_t H5Tget_member_value(hid_t type_id, unsigned membno, void *value ); H5T_cset_t H5Tget_cset(hid_t type_id); htri_t H5Tis_variable_str(hid_t type_id); hid_t H5Tget_native_type(hid_t type_id, H5T_direction_t direction); herr_t H5Tset_size(hid_t type_id, size_t size); herr_t H5Tset_order(hid_t type_id, H5T_order_t order); herr_t H5Tset_precision(hid_t type_id, size_t prec); herr_t H5Tset_offset(hid_t type_id, size_t offset); herr_t H5Tset_pad(hid_t type_id, H5T_pad_t lsb, H5T_pad_t msb); herr_t H5Tset_sign(hid_t type_id, H5T_sign_t sign); herr_t H5Tset_fields(hid_t type_id, size_t spos, size_t epos, size_t esize, size_t mpos, size_t msize); herr_t H5Tset_ebias(hid_t type_id, size_t ebias); herr_t H5Tset_norm(hid_t type_id, H5T_norm_t norm); herr_t H5Tset_inpad(hid_t type_id, H5T_pad_t pad); herr_t H5Tset_cset(hid_t type_id, H5T_cset_t cset); herr_t H5Tset_strpad(hid_t type_id, H5T_str_t strpad); herr_t H5Tregister(H5T_pers_t pers, const char *name, hid_t src_id, hid_t dst_id, H5T_conv_t func); herr_t H5Tunregister(H5T_pers_t pers, const char *name, hid_t src_id, hid_t dst_id, H5T_conv_t func); H5T_conv_t H5Tfind(hid_t src_id, hid_t dst_id, H5T_cdata_t **pcdata); htri_t H5Tcompiler_conv(hid_t src_id, hid_t dst_id); herr_t H5Tconvert(hid_t src_id, hid_t dst_id, size_t nelmts, void *buf, void *background, hid_t plist_id); # 608 "/usr/include/H5Tpublic.h" 3 4 herr_t H5Tcommit1(hid_t loc_id, const char *name, hid_t type_id); hid_t H5Topen1(hid_t loc_id, const char *name); hid_t H5Tarray_create1(hid_t base_id, int ndims, const hsize_t dim[ ], const int perm[ ]); int H5Tget_array_dims1(hid_t type_id, hsize_t dims[], int perm[]); } # 33 "/usr/include/H5Lpublic.h" 2 3 4 # 49 "/usr/include/H5Lpublic.h" 3 4 extern "C" { # 64 "/usr/include/H5Lpublic.h" 3 4 typedef enum { H5L_TYPE_ERROR = (-1), H5L_TYPE_HARD = 0, H5L_TYPE_SOFT = 1, H5L_TYPE_EXTERNAL = 64, H5L_TYPE_MAX = 255 } H5L_type_t; typedef struct { H5L_type_t type; hbool_t corder_valid; int64_t corder; H5T_cset_t cset; union { haddr_t address; size_t val_size; } u; } H5L_info_t; typedef herr_t (*H5L_create_func_t)(const char *link_name, hid_t loc_group, const void *lnkdata, size_t lnkdata_size, hid_t lcpl_id); typedef herr_t (*H5L_move_func_t)(const char *new_name, hid_t new_loc, const void *lnkdata, size_t lnkdata_size); typedef herr_t (*H5L_copy_func_t)(const char *new_name, hid_t new_loc, const void *lnkdata, size_t lnkdata_size); typedef herr_t (*H5L_traverse_func_t)(const char *link_name, hid_t cur_group, const void *lnkdata, size_t lnkdata_size, hid_t lapl_id); typedef herr_t (*H5L_delete_func_t)(const char *link_name, hid_t file, const void *lnkdata, size_t lnkdata_size); typedef ssize_t (*H5L_query_func_t)(const char *link_name, const void *lnkdata, size_t lnkdata_size, void *buf , size_t buf_size); typedef struct { int version; H5L_type_t id; const char *comment; H5L_create_func_t create_func; H5L_move_func_t move_func; H5L_copy_func_t copy_func; H5L_traverse_func_t trav_func; H5L_delete_func_t del_func; H5L_query_func_t query_func; } H5L_class_t; typedef herr_t (*H5L_iterate_t)(hid_t group, const char *name, const H5L_info_t *info, void *op_data); typedef herr_t (*H5L_elink_traverse_t)(const char *parent_file_name, const char *parent_group_name, const char *child_file_name, const char *child_object_name, unsigned *acc_flags, hid_t fapl_id, void *op_data); # 148 "/usr/include/H5Lpublic.h" 3 4 herr_t H5Lmove(hid_t src_loc, const char *src_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Lcopy(hid_t src_loc, const char *src_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Lcreate_hard(hid_t cur_loc, const char *cur_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Lcreate_soft(const char *link_target, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Ldelete(hid_t loc_id, const char *name, hid_t lapl_id); herr_t H5Ldelete_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); herr_t H5Lget_val(hid_t loc_id, const char *name, void *buf , size_t size, hid_t lapl_id); herr_t H5Lget_val_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, void *buf , size_t size, hid_t lapl_id); htri_t H5Lexists(hid_t loc_id, const char *name, hid_t lapl_id); herr_t H5Lget_info(hid_t loc_id, const char *name, H5L_info_t *linfo , hid_t lapl_id); herr_t H5Lget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5L_info_t *linfo , hid_t lapl_id); ssize_t H5Lget_name_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name , size_t size, hid_t lapl_id); herr_t H5Literate(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data); herr_t H5Literate_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data, hid_t lapl_id); herr_t H5Lvisit(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, void *op_data); herr_t H5Lvisit_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, void *op_data, hid_t lapl_id); herr_t H5Lcreate_ud(hid_t link_loc_id, const char *link_name, H5L_type_t link_type, const void *udata, size_t udata_size, hid_t lcpl_id, hid_t lapl_id); herr_t H5Lregister(const H5L_class_t *cls); herr_t H5Lunregister(H5L_type_t id); htri_t H5Lis_registered(H5L_type_t id); herr_t H5Lunpack_elink_val(const void *ext_linkval , size_t link_size, unsigned *flags, const char **filename , const char **obj_path ); herr_t H5Lcreate_external(const char *file_name, const char *obj_name, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id); } # 34 "/usr/include/H5Opublic.h" 2 3 4 # 83 "/usr/include/H5Opublic.h" 3 4 typedef enum H5O_type_t { H5O_TYPE_UNKNOWN = -1, H5O_TYPE_GROUP, H5O_TYPE_DATASET, H5O_TYPE_NAMED_DATATYPE, H5O_TYPE_NTYPES } H5O_type_t; typedef struct H5O_hdr_info_t { unsigned version; unsigned nmesgs; unsigned nchunks; unsigned flags; struct { hsize_t total; hsize_t meta; hsize_t mesg; hsize_t free; } space; struct { uint64_t present; uint64_t shared; } mesg; } H5O_hdr_info_t; typedef struct H5O_info_t { unsigned long fileno; haddr_t addr; H5O_type_t type; unsigned rc; time_t atime; time_t mtime; time_t ctime; time_t btime; hsize_t num_attrs; H5O_hdr_info_t hdr; struct { H5_ih_info_t obj; H5_ih_info_t attr; } meta_size; } H5O_info_t; typedef uint32_t H5O_msg_crt_idx_t; typedef herr_t (*H5O_iterate_t)(hid_t obj, const char *name, const H5O_info_t *info, void *op_data); typedef enum H5O_mcdt_search_ret_t { H5O_MCDT_SEARCH_ERROR = -1, H5O_MCDT_SEARCH_CONT, H5O_MCDT_SEARCH_STOP } H5O_mcdt_search_ret_t; typedef H5O_mcdt_search_ret_t (*H5O_mcdt_search_cb_t)(void *op_data); extern "C" { hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id); hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr); hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id); herr_t H5Oget_info(hid_t loc_id, H5O_info_t *oinfo); herr_t H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id); herr_t H5Oget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id); herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Oincr_refcount(hid_t object_id); herr_t H5Odecr_refcount(hid_t object_id); herr_t H5Ocopy(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name, hid_t ocpypl_id, hid_t lcpl_id); herr_t H5Oset_comment(hid_t obj_id, const char *comment); herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name, const char *comment, hid_t lapl_id); ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize); ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name, char *comment, size_t bufsize, hid_t lapl_id); herr_t H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, void *op_data); herr_t H5Ovisit_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, void *op_data, hid_t lapl_id); herr_t H5Oclose(hid_t object_id); # 197 "/usr/include/H5Opublic.h" 3 4 typedef struct H5O_stat_t { hsize_t size; hsize_t free; unsigned nmesgs; unsigned nchunks; } H5O_stat_t; } # 25 "/usr/include/H5Apublic.h" 2 3 4 extern "C" { typedef struct { hbool_t corder_valid; H5O_msg_crt_idx_t corder; H5T_cset_t cset; hsize_t data_size; } H5A_info_t; typedef herr_t (*H5A_operator2_t)(hid_t location_id , const char *attr_name , const H5A_info_t *ainfo , void *op_data ); hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id); hid_t H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id, hid_t lapl_id); hid_t H5Aopen(hid_t obj_id, const char *attr_name, hid_t aapl_id); hid_t H5Aopen_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t aapl_id, hid_t lapl_id); hid_t H5Aopen_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t aapl_id, hid_t lapl_id); herr_t H5Awrite(hid_t attr_id, hid_t type_id, const void *buf); herr_t H5Aread(hid_t attr_id, hid_t type_id, void *buf); herr_t H5Aclose(hid_t attr_id); hid_t H5Aget_space(hid_t attr_id); hid_t H5Aget_type(hid_t attr_id); hid_t H5Aget_create_plist(hid_t attr_id); ssize_t H5Aget_name(hid_t attr_id, size_t buf_size, char *buf); ssize_t H5Aget_name_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name , size_t size, hid_t lapl_id); hsize_t H5Aget_storage_size(hid_t attr_id); herr_t H5Aget_info(hid_t attr_id, H5A_info_t *ainfo ); herr_t H5Aget_info_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, H5A_info_t *ainfo , hid_t lapl_id); herr_t H5Aget_info_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5A_info_t *ainfo , hid_t lapl_id); herr_t H5Arename(hid_t loc_id, const char *old_name, const char *new_name); herr_t H5Arename_by_name(hid_t loc_id, const char *obj_name, const char *old_attr_name, const char *new_attr_name, hid_t lapl_id); herr_t H5Aiterate2(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data); herr_t H5Aiterate_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data, hid_t lapd_id); herr_t H5Adelete(hid_t loc_id, const char *name); herr_t H5Adelete_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t lapl_id); herr_t H5Adelete_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); htri_t H5Aexists(hid_t obj_id, const char *attr_name); htri_t H5Aexists_by_name(hid_t obj_id, const char *obj_name, const char *attr_name, hid_t lapl_id); # 100 "/usr/include/H5Apublic.h" 3 4 typedef herr_t (*H5A_operator1_t)(hid_t location_id , const char *attr_name , void *operator_data ); hid_t H5Acreate1(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t acpl_id); hid_t H5Aopen_name(hid_t loc_id, const char *name); hid_t H5Aopen_idx(hid_t loc_id, unsigned idx); int H5Aget_num_attrs(hid_t loc_id); herr_t H5Aiterate1(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, void *op_data); } # 26 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5ACpublic.h" 1 3 4 # 33 "/usr/include/H5ACpublic.h" 3 4 # 1 "/usr/include/H5Cpublic.h" 1 3 4 # 35 "/usr/include/H5Cpublic.h" 3 4 extern "C" { enum H5C_cache_incr_mode { H5C_incr__off, H5C_incr__threshold }; enum H5C_cache_flash_incr_mode { H5C_flash_incr__off, H5C_flash_incr__add_space }; enum H5C_cache_decr_mode { H5C_decr__off, H5C_decr__threshold, H5C_decr__age_out, H5C_decr__age_out_with_threshold }; } # 34 "/usr/include/H5ACpublic.h" 2 3 4 extern "C" { # 443 "/usr/include/H5ACpublic.h" 3 4 typedef struct H5AC_cache_config_t { int version; hbool_t rpt_fcn_enabled; hbool_t open_trace_file; hbool_t close_trace_file; char trace_file_name[1024 + 1]; hbool_t evictions_enabled; hbool_t set_initial_size; size_t initial_size; double min_clean_fraction; size_t max_size; size_t min_size; long int epoch_length; enum H5C_cache_incr_mode incr_mode; double lower_hr_threshold; double increment; hbool_t apply_max_increment; size_t max_increment; enum H5C_cache_flash_incr_mode flash_incr_mode; double flash_multiple; double flash_threshold; enum H5C_cache_decr_mode decr_mode; double upper_hr_threshold; double decrement; hbool_t apply_max_decrement; size_t max_decrement; int epochs_before_eviction; hbool_t apply_empty_reserve; double empty_reserve; int dirty_bytes_threshold; int metadata_write_strategy; } H5AC_cache_config_t; } # 27 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5Dpublic.h" 1 3 4 # 48 "/usr/include/H5Dpublic.h" 3 4 typedef enum H5D_layout_t { H5D_LAYOUT_ERROR = -1, H5D_COMPACT = 0, H5D_CONTIGUOUS = 1, H5D_CHUNKED = 2, H5D_NLAYOUTS = 3 } H5D_layout_t; typedef enum H5D_chunk_index_t { H5D_CHUNK_BTREE = 0 } H5D_chunk_index_t; typedef enum H5D_alloc_time_t { H5D_ALLOC_TIME_ERROR = -1, H5D_ALLOC_TIME_DEFAULT = 0, H5D_ALLOC_TIME_EARLY = 1, H5D_ALLOC_TIME_LATE = 2, H5D_ALLOC_TIME_INCR = 3 } H5D_alloc_time_t; typedef enum H5D_space_status_t { H5D_SPACE_STATUS_ERROR = -1, H5D_SPACE_STATUS_NOT_ALLOCATED = 0, H5D_SPACE_STATUS_PART_ALLOCATED = 1, H5D_SPACE_STATUS_ALLOCATED = 2 } H5D_space_status_t; typedef enum H5D_fill_time_t { H5D_FILL_TIME_ERROR = -1, H5D_FILL_TIME_ALLOC = 0, H5D_FILL_TIME_NEVER = 1, H5D_FILL_TIME_IFSET = 2 } H5D_fill_time_t; typedef enum H5D_fill_value_t { H5D_FILL_VALUE_ERROR =-1, H5D_FILL_VALUE_UNDEFINED =0, H5D_FILL_VALUE_DEFAULT =1, H5D_FILL_VALUE_USER_DEFINED =2 } H5D_fill_value_t; # 103 "/usr/include/H5Dpublic.h" 3 4 extern "C" { typedef herr_t (*H5D_operator_t)(void *elem, hid_t type_id, unsigned ndim, const hsize_t *point, void *operator_data); typedef herr_t (*H5D_scatter_func_t)(const void **src_buf , size_t *src_buf_bytes_used , void *op_data); typedef herr_t (*H5D_gather_func_t)(const void *dst_buf, size_t dst_buf_bytes_used, void *op_data); hid_t H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id); hid_t H5Dcreate_anon(hid_t file_id, hid_t type_id, hid_t space_id, hid_t plist_id, hid_t dapl_id); hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id); herr_t H5Dclose(hid_t dset_id); hid_t H5Dget_space(hid_t dset_id); herr_t H5Dget_space_status(hid_t dset_id, H5D_space_status_t *allocation); hid_t H5Dget_type(hid_t dset_id); hid_t H5Dget_create_plist(hid_t dset_id); hid_t H5Dget_access_plist(hid_t dset_id); hsize_t H5Dget_storage_size(hid_t dset_id); haddr_t H5Dget_offset(hid_t dset_id); herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, void *buf ); herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, const void *buf); herr_t H5Diterate(void *buf, hid_t type_id, hid_t space_id, H5D_operator_t op, void *operator_data); herr_t H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t plist_id, void *buf); herr_t H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id, hsize_t *size); herr_t H5Dfill(const void *fill, hid_t fill_type, void *buf, hid_t buf_type, hid_t space); herr_t H5Dset_extent(hid_t dset_id, const hsize_t size[]); herr_t H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id, hid_t dst_space_id, void *dst_buf); herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id, size_t dst_buf_size, void *dst_buf, H5D_gather_func_t op, void *op_data); herr_t H5Ddebug(hid_t dset_id); # 162 "/usr/include/H5Dpublic.h" 3 4 hid_t H5Dcreate1(hid_t file_id, const char *name, hid_t type_id, hid_t space_id, hid_t dcpl_id); hid_t H5Dopen1(hid_t file_id, const char *name); herr_t H5Dextend(hid_t dset_id, const hsize_t size[]); } # 28 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5Epublic.h" 1 3 4 # 22 "/usr/include/H5Epublic.h" 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 29 "/usr/include/stdio.h" 3 4 extern "C" { # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 34 "/usr/include/stdio.h" 2 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 74 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 31 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 82 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 32 "/usr/include/libio.h" 2 3 4 # 49 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 50 "/usr/include/libio.h" 2 3 4 # 144 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 154 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 177 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 245 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 293 "/usr/include/libio.h" 3 4 __off64_t _offset; # 302 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 338 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); typedef __io_read_fn cookie_read_function_t; typedef __io_write_fn cookie_write_function_t; typedef __io_seek_fn cookie_seek_function_t; typedef __io_close_fn cookie_close_function_t; typedef struct { __io_read_fn *read; __io_write_fn *write; __io_seek_fn *seek; __io_close_fn *close; } _IO_cookie_io_functions_t; typedef _IO_cookie_io_functions_t cookie_io_functions_t; struct _IO_cookie_file; extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write, void *__cookie, _IO_cookie_io_functions_t __fns); extern "C" { extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 434 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) throw (); extern int _IO_ferror (_IO_FILE *__fp) throw (); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) throw (); extern void _IO_funlockfile (_IO_FILE *) throw (); extern int _IO_ftrylockfile (_IO_FILE *) throw (); # 464 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) throw (); # 526 "/usr/include/libio.h" 3 4 } # 75 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 108 "/usr/include/stdio.h" 3 4 typedef _G_fpos_t fpos_t; typedef _G_fpos64_t fpos64_t; # 164 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 165 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (const char *__filename) throw (); extern int rename (const char *__old, const char *__new) throw (); extern int renameat (int __oldfd, const char *__old, int __newfd, const char *__new) throw (); extern FILE *tmpfile (void) ; # 205 "/usr/include/stdio.h" 3 4 extern FILE *tmpfile64 (void) ; extern char *tmpnam (char *__s) throw () ; extern char *tmpnam_r (char *__s) throw () ; # 227 "/usr/include/stdio.h" 3 4 extern char *tempnam (const char *__dir, const char *__pfx) throw () __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 252 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 262 "/usr/include/stdio.h" 3 4 extern int fcloseall (void); extern FILE *fopen (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; # 295 "/usr/include/stdio.h" 3 4 extern FILE *fopen64 (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen64 (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; extern FILE *fdopen (int __fd, const char *__modes) throw () ; extern FILE *fopencookie (void *__restrict __magic_cookie, const char *__restrict __modes, _IO_cookie_io_functions_t __io_funcs) throw () ; extern FILE *fmemopen (void *__s, size_t __len, const char *__modes) throw () ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) throw () ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) throw (); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) throw (); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) throw (); extern void setlinebuf (FILE *__stream) throw (); extern int fprintf (FILE *__restrict __stream, const char *__restrict __format, ...); extern int printf (const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, const char *__restrict __format, ...) throw (); extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) throw (); extern int snprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 3, 0))); extern int vasprintf (char **__restrict __ptr, const char *__restrict __f, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 2, 0))) ; extern int __asprintf (char **__restrict __ptr, const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int asprintf (char **__restrict __ptr, const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int vdprintf (int __fd, const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) ; extern int scanf (const char *__restrict __format, ...) ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) throw (); # 463 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__scanf__, 2, 0))); # 522 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 550 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 561 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 594 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 638 "/usr/include/stdio.h" 3 4 extern char *gets (char *__s) __attribute__ ((__deprecated__)); # 649 "/usr/include/stdio.h" 3 4 extern char *fgets_unlocked (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 665 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (const char *__restrict __s, FILE *__restrict __stream); extern int puts (const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 726 "/usr/include/stdio.h" 3 4 extern int fputs_unlocked (const char *__restrict __s, FILE *__restrict __stream); # 737 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 773 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 792 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, const fpos_t *__pos); # 815 "/usr/include/stdio.h" 3 4 extern int fseeko64 (FILE *__stream, __off64_t __off, int __whence); extern __off64_t ftello64 (FILE *__stream) ; extern int fgetpos64 (FILE *__restrict __stream, fpos64_t *__restrict __pos); extern int fsetpos64 (FILE *__stream, const fpos64_t *__pos); extern void clearerr (FILE *__stream) throw (); extern int feof (FILE *__stream) throw () ; extern int ferror (FILE *__stream) throw () ; extern void clearerr_unlocked (FILE *__stream) throw (); extern int feof_unlocked (FILE *__stream) throw () ; extern int ferror_unlocked (FILE *__stream) throw () ; extern void perror (const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 4 # 26 "/usr/include/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern const char *const sys_errlist[]; extern int _sys_nerr; extern const char *const _sys_errlist[]; # 854 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) throw () ; extern int fileno_unlocked (FILE *__stream) throw () ; # 872 "/usr/include/stdio.h" 3 4 extern FILE *popen (const char *__command, const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) throw (); extern char *cuserid (char *__s); struct obstack; extern int obstack_printf (struct obstack *__restrict __obstack, const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))); extern int obstack_vprintf (struct obstack *__restrict __obstack, const char *__restrict __format, __gnuc_va_list __args) throw () __attribute__ ((__format__ (__printf__, 2, 0))); extern void flockfile (FILE *__stream) throw (); extern int ftrylockfile (FILE *__stream) throw () ; extern void funlockfile (FILE *__stream) throw (); # 942 "/usr/include/stdio.h" 3 4 } # 23 "/usr/include/H5Epublic.h" 2 3 4 # 32 "/usr/include/H5Epublic.h" 3 4 typedef enum H5E_type_t { H5E_MAJOR, H5E_MINOR } H5E_type_t; typedef struct H5E_error2_t { hid_t cls_id; hid_t maj_num; hid_t min_num; unsigned line; const char *func_name; const char *file_name; const char *desc; } H5E_error2_t; # 58 "/usr/include/H5Epublic.h" 3 4 extern hid_t H5E_ERR_CLS_g; # 1 "/usr/include/H5Epubgen.h" 1 3 4 # 58 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_DATASET_g; extern hid_t H5E_FUNC_g; extern hid_t H5E_STORAGE_g; extern hid_t H5E_FILE_g; extern hid_t H5E_SOHM_g; extern hid_t H5E_SYM_g; extern hid_t H5E_PLUGIN_g; extern hid_t H5E_VFL_g; extern hid_t H5E_INTERNAL_g; extern hid_t H5E_BTREE_g; extern hid_t H5E_REFERENCE_g; extern hid_t H5E_DATASPACE_g; extern hid_t H5E_RESOURCE_g; extern hid_t H5E_PLIST_g; extern hid_t H5E_LINK_g; extern hid_t H5E_DATATYPE_g; extern hid_t H5E_RS_g; extern hid_t H5E_HEAP_g; extern hid_t H5E_OHDR_g; extern hid_t H5E_ATOM_g; extern hid_t H5E_ATTR_g; extern hid_t H5E_NONE_MAJOR_g; extern hid_t H5E_IO_g; extern hid_t H5E_SLIST_g; extern hid_t H5E_EFL_g; extern hid_t H5E_TST_g; extern hid_t H5E_ARGS_g; extern hid_t H5E_ERROR_g; extern hid_t H5E_PLINE_g; extern hid_t H5E_FSPACE_g; extern hid_t H5E_CACHE_g; # 101 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_SEEKERROR_g; extern hid_t H5E_READERROR_g; extern hid_t H5E_WRITEERROR_g; extern hid_t H5E_CLOSEERROR_g; extern hid_t H5E_OVERFLOW_g; extern hid_t H5E_FCNTL_g; # 119 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_NOSPACE_g; extern hid_t H5E_CANTALLOC_g; extern hid_t H5E_CANTCOPY_g; extern hid_t H5E_CANTFREE_g; extern hid_t H5E_ALREADYEXISTS_g; extern hid_t H5E_CANTLOCK_g; extern hid_t H5E_CANTUNLOCK_g; extern hid_t H5E_CANTGC_g; extern hid_t H5E_CANTGETSIZE_g; extern hid_t H5E_OBJOPEN_g; # 137 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_CANTRESTORE_g; extern hid_t H5E_CANTCOMPUTE_g; extern hid_t H5E_CANTEXTEND_g; extern hid_t H5E_CANTATTACH_g; extern hid_t H5E_CANTUPDATE_g; extern hid_t H5E_CANTOPERATE_g; extern hid_t H5E_CANTINIT_g; extern hid_t H5E_ALREADYINIT_g; extern hid_t H5E_CANTRELEASE_g; extern hid_t H5E_CANTGET_g; extern hid_t H5E_CANTSET_g; extern hid_t H5E_DUPCLASS_g; extern hid_t H5E_SETDISALLOWED_g; extern hid_t H5E_CANTMERGE_g; extern hid_t H5E_CANTREVIVE_g; extern hid_t H5E_CANTSHRINK_g; # 180 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_LINKCOUNT_g; extern hid_t H5E_VERSION_g; extern hid_t H5E_ALIGNMENT_g; extern hid_t H5E_BADMESG_g; extern hid_t H5E_CANTDELETE_g; extern hid_t H5E_BADITER_g; extern hid_t H5E_CANTPACK_g; extern hid_t H5E_CANTRESET_g; extern hid_t H5E_CANTRENAME_g; extern hid_t H5E_SYSERRSTR_g; # 201 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_NOFILTER_g; extern hid_t H5E_CALLBACK_g; extern hid_t H5E_CANAPPLY_g; extern hid_t H5E_SETLOCAL_g; extern hid_t H5E_NOENCODER_g; extern hid_t H5E_CANTFILTER_g; extern hid_t H5E_CANTOPENOBJ_g; extern hid_t H5E_CANTCLOSEOBJ_g; extern hid_t H5E_COMPLEN_g; extern hid_t H5E_PATH_g; extern hid_t H5E_NONE_MINOR_g; extern hid_t H5E_OPENERROR_g; # 236 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_FILEEXISTS_g; extern hid_t H5E_FILEOPEN_g; extern hid_t H5E_CANTCREATE_g; extern hid_t H5E_CANTOPENFILE_g; extern hid_t H5E_CANTCLOSEFILE_g; extern hid_t H5E_NOTHDF5_g; extern hid_t H5E_BADFILE_g; extern hid_t H5E_TRUNCATED_g; extern hid_t H5E_MOUNT_g; # 253 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_BADATOM_g; extern hid_t H5E_BADGROUP_g; extern hid_t H5E_CANTREGISTER_g; extern hid_t H5E_CANTINC_g; extern hid_t H5E_CANTDEC_g; extern hid_t H5E_NOIDS_g; # 276 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_CANTFLUSH_g; extern hid_t H5E_CANTSERIALIZE_g; extern hid_t H5E_CANTLOAD_g; extern hid_t H5E_PROTECT_g; extern hid_t H5E_NOTCACHED_g; extern hid_t H5E_SYSTEM_g; extern hid_t H5E_CANTINS_g; extern hid_t H5E_CANTPROTECT_g; extern hid_t H5E_CANTUNPROTECT_g; extern hid_t H5E_CANTPIN_g; extern hid_t H5E_CANTUNPIN_g; extern hid_t H5E_CANTMARKDIRTY_g; extern hid_t H5E_CANTDIRTY_g; extern hid_t H5E_CANTEXPUNGE_g; extern hid_t H5E_CANTRESIZE_g; extern hid_t H5E_TRAVERSE_g; extern hid_t H5E_NLINKS_g; extern hid_t H5E_NOTREGISTERED_g; extern hid_t H5E_CANTMOVE_g; extern hid_t H5E_CANTSORT_g; extern hid_t H5E_MPI_g; extern hid_t H5E_MPIERRSTR_g; extern hid_t H5E_CANTRECV_g; # 319 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_CANTCLIP_g; extern hid_t H5E_CANTCOUNT_g; extern hid_t H5E_CANTSELECT_g; extern hid_t H5E_CANTNEXT_g; extern hid_t H5E_BADSELECT_g; extern hid_t H5E_CANTCOMPARE_g; extern hid_t H5E_UNINITIALIZED_g; extern hid_t H5E_UNSUPPORTED_g; extern hid_t H5E_BADTYPE_g; extern hid_t H5E_BADRANGE_g; extern hid_t H5E_BADVALUE_g; # 350 "/usr/include/H5Epubgen.h" 3 4 extern hid_t H5E_NOTFOUND_g; extern hid_t H5E_EXISTS_g; extern hid_t H5E_CANTENCODE_g; extern hid_t H5E_CANTDECODE_g; extern hid_t H5E_CANTSPLIT_g; extern hid_t H5E_CANTREDISTRIBUTE_g; extern hid_t H5E_CANTSWAP_g; extern hid_t H5E_CANTINSERT_g; extern hid_t H5E_CANTLIST_g; extern hid_t H5E_CANTMODIFY_g; extern hid_t H5E_CANTREMOVE_g; extern hid_t H5E_CANTCONVERT_g; extern hid_t H5E_BADSIZE_g; # 63 "/usr/include/H5Epublic.h" 2 3 4 # 141 "/usr/include/H5Epublic.h" 3 4 typedef enum H5E_direction_t { H5E_WALK_UPWARD = 0, H5E_WALK_DOWNWARD = 1 } H5E_direction_t; extern "C" { typedef herr_t (*H5E_walk2_t)(unsigned n, const H5E_error2_t *err_desc, void *client_data); typedef herr_t (*H5E_auto2_t)(hid_t estack, void *client_data); hid_t H5Eregister_class(const char *cls_name, const char *lib_name, const char *version); herr_t H5Eunregister_class(hid_t class_id); herr_t H5Eclose_msg(hid_t err_id); hid_t H5Ecreate_msg(hid_t cls, H5E_type_t msg_type, const char *msg); hid_t H5Ecreate_stack(void); hid_t H5Eget_current_stack(void); herr_t H5Eclose_stack(hid_t stack_id); ssize_t H5Eget_class_name(hid_t class_id, char *name, size_t size); herr_t H5Eset_current_stack(hid_t err_stack_id); herr_t H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *msg, ...); herr_t H5Epop(hid_t err_stack, size_t count); herr_t H5Eprint2(hid_t err_stack, FILE *stream); herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func, void *client_data); herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data); herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); herr_t H5Eclear2(hid_t err_stack); herr_t H5Eauto_is_v2(hid_t err_stack, unsigned *is_stack); ssize_t H5Eget_msg(hid_t msg_id, H5E_type_t *type, char *msg, size_t size); ssize_t H5Eget_num(hid_t error_stack_id); # 193 "/usr/include/H5Epublic.h" 3 4 typedef hid_t H5E_major_t; typedef hid_t H5E_minor_t; typedef struct H5E_error1_t { H5E_major_t maj_num; H5E_minor_t min_num; const char *func_name; const char *file_name; unsigned line; const char *desc; } H5E_error1_t; typedef herr_t (*H5E_walk1_t)(int n, H5E_error1_t *err_desc, void *client_data); typedef herr_t (*H5E_auto1_t)(void *client_data); herr_t H5Eclear1(void); herr_t H5Eget_auto1(H5E_auto1_t *func, void **client_data); herr_t H5Epush1(const char *file, const char *func, unsigned line, H5E_major_t maj, H5E_minor_t min, const char *str); herr_t H5Eprint1(FILE *stream); herr_t H5Eset_auto1(H5E_auto1_t func, void *client_data); herr_t H5Ewalk1(H5E_direction_t direction, H5E_walk1_t func, void *client_data); char *H5Eget_major(H5E_major_t maj); char *H5Eget_minor(H5E_minor_t min); } # 29 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5Fpublic.h" 1 3 4 # 79 "/usr/include/H5Fpublic.h" 3 4 typedef enum H5F_scope_t { H5F_SCOPE_LOCAL = 0, H5F_SCOPE_GLOBAL = 1 } H5F_scope_t; # 95 "/usr/include/H5Fpublic.h" 3 4 typedef enum H5F_close_degree_t { H5F_CLOSE_DEFAULT = 0, H5F_CLOSE_WEAK = 1, H5F_CLOSE_SEMI = 2, H5F_CLOSE_STRONG = 3 } H5F_close_degree_t; typedef struct H5F_info_t { hsize_t super_ext_size; struct { hsize_t hdr_size; H5_ih_info_t msgs_info; } sohm; } H5F_info_t; # 120 "/usr/include/H5Fpublic.h" 3 4 typedef enum H5F_mem_t { H5FD_MEM_NOLIST = -1, H5FD_MEM_DEFAULT = 0, H5FD_MEM_SUPER = 1, H5FD_MEM_BTREE = 2, H5FD_MEM_DRAW = 3, H5FD_MEM_GHEAP = 4, H5FD_MEM_LHEAP = 5, H5FD_MEM_OHDR = 6, H5FD_MEM_NTYPES } H5F_mem_t; typedef enum H5F_libver_t { H5F_LIBVER_EARLIEST, H5F_LIBVER_LATEST } H5F_libver_t; extern "C" { htri_t H5Fis_hdf5(const char *filename); hid_t H5Fcreate(const char *filename, unsigned flags, hid_t create_plist, hid_t access_plist); hid_t H5Fopen(const char *filename, unsigned flags, hid_t access_plist); hid_t H5Freopen(hid_t file_id); herr_t H5Fflush(hid_t object_id, H5F_scope_t scope); herr_t H5Fclose(hid_t file_id); hid_t H5Fget_create_plist(hid_t file_id); hid_t H5Fget_access_plist(hid_t file_id); herr_t H5Fget_intent(hid_t file_id, unsigned * intent); ssize_t H5Fget_obj_count(hid_t file_id, unsigned types); ssize_t H5Fget_obj_ids(hid_t file_id, unsigned types, size_t max_objs, hid_t *obj_id_list); herr_t H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle); herr_t H5Fmount(hid_t loc, const char *name, hid_t child, hid_t plist); herr_t H5Funmount(hid_t loc, const char *name); hssize_t H5Fget_freespace(hid_t file_id); herr_t H5Fget_filesize(hid_t file_id, hsize_t *size); ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len); herr_t H5Fget_mdc_config(hid_t file_id, H5AC_cache_config_t * config_ptr); herr_t H5Fset_mdc_config(hid_t file_id, H5AC_cache_config_t * config_ptr); herr_t H5Fget_mdc_hit_rate(hid_t file_id, double * hit_rate_ptr); herr_t H5Fget_mdc_size(hid_t file_id, size_t * max_size_ptr, size_t * min_clean_size_ptr, size_t * cur_size_ptr, int * cur_num_entries_ptr); herr_t H5Freset_mdc_hit_rate_stats(hid_t file_id); ssize_t H5Fget_name(hid_t obj_id, char *name, size_t size); herr_t H5Fget_info(hid_t obj_id, H5F_info_t *bh_info); herr_t H5Fclear_elink_file_cache(hid_t file_id); } # 30 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDpublic.h" 1 3 4 # 30 "/usr/include/H5FDpublic.h" 3 4 typedef enum H5F_mem_t H5FD_mem_t; # 195 "/usr/include/H5FDpublic.h" 3 4 typedef struct H5FD_t H5FD_t; typedef struct H5FD_class_t { const char *name; haddr_t maxaddr; H5F_close_degree_t fc_degree; hsize_t (*sb_size)(H5FD_t *file); herr_t (*sb_encode)(H5FD_t *file, char *name , unsigned char *p ); herr_t (*sb_decode)(H5FD_t *f, const char *name, const unsigned char *p); size_t fapl_size; void * (*fapl_get)(H5FD_t *file); void * (*fapl_copy)(const void *fapl); herr_t (*fapl_free)(void *fapl); size_t dxpl_size; void * (*dxpl_copy)(const void *dxpl); herr_t (*dxpl_free)(void *dxpl); H5FD_t *(*open)(const char *name, unsigned flags, hid_t fapl, haddr_t maxaddr); herr_t (*close)(H5FD_t *file); int (*cmp)(const H5FD_t *f1, const H5FD_t *f2); herr_t (*query)(const H5FD_t *f1, unsigned long *flags); herr_t (*get_type_map)(const H5FD_t *file, H5FD_mem_t *type_map); haddr_t (*alloc)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size); herr_t (*free)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size); haddr_t (*get_eoa)(const H5FD_t *file, H5FD_mem_t type); herr_t (*set_eoa)(H5FD_t *file, H5FD_mem_t type, haddr_t addr); haddr_t (*get_eof)(const H5FD_t *file); herr_t (*get_handle)(H5FD_t *file, hid_t fapl, void**file_handle); herr_t (*read)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl, haddr_t addr, size_t size, void *buffer); herr_t (*write)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl, haddr_t addr, size_t size, const void *buffer); herr_t (*flush)(H5FD_t *file, hid_t dxpl_id, unsigned closing); herr_t (*truncate)(H5FD_t *file, hid_t dxpl_id, hbool_t closing); herr_t (*lock)(H5FD_t *file, unsigned char *oid, unsigned lock_type, hbool_t last); herr_t (*unlock)(H5FD_t *file, unsigned char *oid, hbool_t last); H5FD_mem_t fl_map[H5FD_MEM_NTYPES]; } H5FD_class_t; typedef struct H5FD_free_t { haddr_t addr; hsize_t size; struct H5FD_free_t *next; } H5FD_free_t; struct H5FD_t { hid_t driver_id; const H5FD_class_t *cls; unsigned long fileno; unsigned long feature_flags; haddr_t maxaddr; haddr_t base_addr; hsize_t threshold; hsize_t alignment; }; typedef enum { H5FD_FILE_IMAGE_OP_NO_OP, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_SET, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_COPY, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_GET, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_CLOSE, H5FD_FILE_IMAGE_OP_FILE_OPEN, H5FD_FILE_IMAGE_OP_FILE_RESIZE, H5FD_FILE_IMAGE_OP_FILE_CLOSE } H5FD_file_image_op_t; typedef struct { void *(*image_malloc)(size_t size, H5FD_file_image_op_t file_image_op, void *udata); void *(*image_memcpy)(void *dest, const void *src, size_t size, H5FD_file_image_op_t file_image_op, void *udata); void *(*image_realloc)(void *ptr, size_t size, H5FD_file_image_op_t file_image_op, void *udata); herr_t (*image_free)(void *ptr, H5FD_file_image_op_t file_image_op, void *udata); void *(*udata_copy)(void *udata); herr_t (*udata_free)(void *udata); void *udata; } H5FD_file_image_callbacks_t; extern "C" { hid_t H5FDregister(const H5FD_class_t *cls); herr_t H5FDunregister(hid_t driver_id); H5FD_t *H5FDopen(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr); herr_t H5FDclose(H5FD_t *file); int H5FDcmp(const H5FD_t *f1, const H5FD_t *f2); int H5FDquery(const H5FD_t *f, unsigned long *flags); haddr_t H5FDalloc(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size); herr_t H5FDfree(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size); haddr_t H5FDget_eoa(H5FD_t *file, H5FD_mem_t type); herr_t H5FDset_eoa(H5FD_t *file, H5FD_mem_t type, haddr_t eoa); haddr_t H5FDget_eof(H5FD_t *file); herr_t H5FDget_vfd_handle(H5FD_t *file, hid_t fapl, void**file_handle); herr_t H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, void *buf ); herr_t H5FDwrite(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, const void *buf); herr_t H5FDflush(H5FD_t *file, hid_t dxpl_id, unsigned closing); herr_t H5FDtruncate(H5FD_t *file, hid_t dxpl_id, hbool_t closing); } # 31 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5Gpublic.h" 1 3 4 # 43 "/usr/include/H5Gpublic.h" 3 4 extern "C" { typedef enum H5G_storage_type_t { H5G_STORAGE_TYPE_UNKNOWN = -1, H5G_STORAGE_TYPE_SYMBOL_TABLE, H5G_STORAGE_TYPE_COMPACT, H5G_STORAGE_TYPE_DENSE } H5G_storage_type_t; typedef struct H5G_info_t { H5G_storage_type_t storage_type; hsize_t nlinks; int64_t max_corder; hbool_t mounted; } H5G_info_t; # 75 "/usr/include/H5Gpublic.h" 3 4 hid_t H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id, hid_t gcpl_id, hid_t gapl_id); hid_t H5Gcreate_anon(hid_t loc_id, hid_t gcpl_id, hid_t gapl_id); hid_t H5Gopen2(hid_t loc_id, const char *name, hid_t gapl_id); hid_t H5Gget_create_plist(hid_t group_id); herr_t H5Gget_info(hid_t loc_id, H5G_info_t *ginfo); herr_t H5Gget_info_by_name(hid_t loc_id, const char *name, H5G_info_t *ginfo, hid_t lapl_id); herr_t H5Gget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5G_info_t *ginfo, hid_t lapl_id); herr_t H5Gclose(hid_t group_id); # 119 "/usr/include/H5Gpublic.h" 3 4 typedef enum H5G_obj_t { H5G_UNKNOWN = -1, H5G_GROUP, H5G_DATASET, H5G_TYPE, H5G_LINK, H5G_UDLINK, H5G_RESERVED_5, H5G_RESERVED_6, H5G_RESERVED_7 } H5G_obj_t; typedef herr_t (*H5G_iterate_t)(hid_t group, const char *name, void *op_data); typedef struct H5G_stat_t { unsigned long fileno[2]; unsigned long objno[2]; unsigned nlink; H5G_obj_t type; time_t mtime; size_t linklen; H5O_stat_t ohdr; } H5G_stat_t; hid_t H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint); hid_t H5Gopen1(hid_t loc_id, const char *name); herr_t H5Glink(hid_t cur_loc_id, H5L_type_t type, const char *cur_name, const char *new_name); herr_t H5Glink2(hid_t cur_loc_id, const char *cur_name, H5L_type_t type, hid_t new_loc_id, const char *new_name); herr_t H5Gmove(hid_t src_loc_id, const char *src_name, const char *dst_name); herr_t H5Gmove2(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name); herr_t H5Gunlink(hid_t loc_id, const char *name); herr_t H5Gget_linkval(hid_t loc_id, const char *name, size_t size, char *buf ); herr_t H5Gset_comment(hid_t loc_id, const char *name, const char *comment); int H5Gget_comment(hid_t loc_id, const char *name, size_t bufsize, char *buf); herr_t H5Giterate(hid_t loc_id, const char *name, int *idx, H5G_iterate_t op, void *op_data); herr_t H5Gget_num_objs(hid_t loc_id, hsize_t *num_objs); herr_t H5Gget_objinfo(hid_t loc_id, const char *name, hbool_t follow_link, H5G_stat_t *statbuf ); ssize_t H5Gget_objname_by_idx(hid_t loc_id, hsize_t idx, char* name, size_t size); H5G_obj_t H5Gget_objtype_by_idx(hid_t loc_id, hsize_t idx); } # 32 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5MMpublic.h" 1 3 4 # 36 "/usr/include/H5MMpublic.h" 3 4 typedef void *(*H5MM_allocate_t)(size_t size, void *alloc_info); typedef void (*H5MM_free_t)(void *mem, void *free_info); extern "C" { } # 35 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5Ppublic.h" 1 3 4 # 36 "/usr/include/H5Ppublic.h" 3 4 # 1 "/usr/include/H5Zpublic.h" 1 3 4 # 33 "/usr/include/H5Zpublic.h" 3 4 typedef int H5Z_filter_t; # 99 "/usr/include/H5Zpublic.h" 3 4 typedef enum H5Z_SO_scale_type_t { H5Z_SO_FLOAT_DSCALE = 0, H5Z_SO_FLOAT_ESCALE = 1, H5Z_SO_INT = 2 } H5Z_SO_scale_type_t; typedef enum H5Z_EDC_t { H5Z_ERROR_EDC = -1, H5Z_DISABLE_EDC = 0, H5Z_ENABLE_EDC = 1, H5Z_NO_EDC = 2 } H5Z_EDC_t; typedef enum H5Z_cb_return_t { H5Z_CB_ERROR = -1, H5Z_CB_FAIL = 0, H5Z_CB_CONT = 1, H5Z_CB_NO = 2 } H5Z_cb_return_t; typedef H5Z_cb_return_t (*H5Z_filter_func_t)(H5Z_filter_t filter, void* buf, size_t buf_size, void* op_data); typedef struct H5Z_cb_t { H5Z_filter_func_t func; void* op_data; } H5Z_cb_t; extern "C" { # 162 "/usr/include/H5Zpublic.h" 3 4 typedef htri_t (*H5Z_can_apply_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id); # 185 "/usr/include/H5Zpublic.h" 3 4 typedef herr_t (*H5Z_set_local_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id); # 202 "/usr/include/H5Zpublic.h" 3 4 typedef size_t (*H5Z_func_t)(unsigned int flags, size_t cd_nelmts, const unsigned int cd_values[], size_t nbytes, size_t *buf_size, void **buf); typedef struct H5Z_class2_t { int version; H5Z_filter_t id; unsigned encoder_present; unsigned decoder_present; const char *name; H5Z_can_apply_func_t can_apply; H5Z_set_local_func_t set_local; H5Z_func_t filter; } H5Z_class2_t; herr_t H5Zregister(const void *cls); herr_t H5Zunregister(H5Z_filter_t id); htri_t H5Zfilter_avail(H5Z_filter_t id); herr_t H5Zget_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags); # 236 "/usr/include/H5Zpublic.h" 3 4 typedef struct H5Z_class1_t { H5Z_filter_t id; const char *name; H5Z_can_apply_func_t can_apply; H5Z_set_local_func_t set_local; H5Z_func_t filter; } H5Z_class1_t; } # 37 "/usr/include/H5Ppublic.h" 2 3 4 # 96 "/usr/include/H5Ppublic.h" 3 4 extern "C" { # 105 "/usr/include/H5Ppublic.h" 3 4 typedef herr_t (*H5P_cls_create_func_t)(hid_t prop_id, void *create_data); typedef herr_t (*H5P_cls_copy_func_t)(hid_t new_prop_id, hid_t old_prop_id, void *copy_data); typedef herr_t (*H5P_cls_close_func_t)(hid_t prop_id, void *close_data); typedef herr_t (*H5P_prp_cb1_t)(const char *name, size_t size, void *value); typedef herr_t (*H5P_prp_cb2_t)(hid_t prop_id, const char *name, size_t size, void *value); typedef H5P_prp_cb1_t H5P_prp_create_func_t; typedef H5P_prp_cb2_t H5P_prp_set_func_t; typedef H5P_prp_cb2_t H5P_prp_get_func_t; typedef H5P_prp_cb2_t H5P_prp_delete_func_t; typedef H5P_prp_cb1_t H5P_prp_copy_func_t; typedef int (*H5P_prp_compare_func_t)(const void *value1, const void *value2, size_t size); typedef H5P_prp_cb1_t H5P_prp_close_func_t; typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data); typedef enum H5D_mpio_actual_chunk_opt_mode_t { H5D_MPIO_NO_CHUNK_OPTIMIZATION = 0, H5D_MPIO_LINK_CHUNK, H5D_MPIO_MULTI_CHUNK } H5D_mpio_actual_chunk_opt_mode_t; typedef enum H5D_mpio_actual_io_mode_t { # 146 "/usr/include/H5Ppublic.h" 3 4 H5D_MPIO_NO_COLLECTIVE = 0x0, H5D_MPIO_CHUNK_INDEPENDENT = 0x1, H5D_MPIO_CHUNK_COLLECTIVE = 0x2, H5D_MPIO_CHUNK_MIXED = 0x1 | 0x2, H5D_MPIO_CONTIGUOUS_COLLECTIVE = 0x4 } H5D_mpio_actual_io_mode_t; typedef enum H5D_mpio_no_collective_cause_t { H5D_MPIO_COLLECTIVE = 0x00, H5D_MPIO_SET_INDEPENDENT = 0x01, H5D_MPIO_DATATYPE_CONVERSION = 0x02, H5D_MPIO_DATA_TRANSFORMS = 0x04, H5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED = 0x08, H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES = 0x10, H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET = 0x20, H5D_MPIO_FILTERS = 0x40 } H5D_mpio_no_collective_cause_t; extern hid_t H5P_CLS_ROOT_g; extern hid_t H5P_CLS_OBJECT_CREATE_g; extern hid_t H5P_CLS_FILE_CREATE_g; extern hid_t H5P_CLS_FILE_ACCESS_g; extern hid_t H5P_CLS_DATASET_CREATE_g; extern hid_t H5P_CLS_DATASET_ACCESS_g; extern hid_t H5P_CLS_DATASET_XFER_g; extern hid_t H5P_CLS_FILE_MOUNT_g; extern hid_t H5P_CLS_GROUP_CREATE_g; extern hid_t H5P_CLS_GROUP_ACCESS_g; extern hid_t H5P_CLS_DATATYPE_CREATE_g; extern hid_t H5P_CLS_DATATYPE_ACCESS_g; extern hid_t H5P_CLS_STRING_CREATE_g; extern hid_t H5P_CLS_ATTRIBUTE_CREATE_g; extern hid_t H5P_CLS_OBJECT_COPY_g; extern hid_t H5P_CLS_LINK_CREATE_g; extern hid_t H5P_CLS_LINK_ACCESS_g; extern hid_t H5P_LST_FILE_CREATE_g; extern hid_t H5P_LST_FILE_ACCESS_g; extern hid_t H5P_LST_DATASET_CREATE_g; extern hid_t H5P_LST_DATASET_ACCESS_g; extern hid_t H5P_LST_DATASET_XFER_g; extern hid_t H5P_LST_FILE_MOUNT_g; extern hid_t H5P_LST_GROUP_CREATE_g; extern hid_t H5P_LST_GROUP_ACCESS_g; extern hid_t H5P_LST_DATATYPE_CREATE_g; extern hid_t H5P_LST_DATATYPE_ACCESS_g; extern hid_t H5P_LST_ATTRIBUTE_CREATE_g; extern hid_t H5P_LST_OBJECT_COPY_g; extern hid_t H5P_LST_LINK_CREATE_g; extern hid_t H5P_LST_LINK_ACCESS_g; hid_t H5Pcreate_class(hid_t parent, const char *name, H5P_cls_create_func_t cls_create, void *create_data, H5P_cls_copy_func_t cls_copy, void *copy_data, H5P_cls_close_func_t cls_close, void *close_data); char *H5Pget_class_name(hid_t pclass_id); hid_t H5Pcreate(hid_t cls_id); herr_t H5Pregister2(hid_t cls_id, const char *name, size_t size, void *def_value, H5P_prp_create_func_t prp_create, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close); herr_t H5Pinsert2(hid_t plist_id, const char *name, size_t size, void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close); herr_t H5Pset(hid_t plist_id, const char *name, void *value); htri_t H5Pexist(hid_t plist_id, const char *name); herr_t H5Pget_size(hid_t id, const char *name, size_t *size); herr_t H5Pget_nprops(hid_t id, size_t *nprops); hid_t H5Pget_class(hid_t plist_id); hid_t H5Pget_class_parent(hid_t pclass_id); herr_t H5Pget(hid_t plist_id, const char *name, void * value); htri_t H5Pequal(hid_t id1, hid_t id2); htri_t H5Pisa_class(hid_t plist_id, hid_t pclass_id); int H5Piterate(hid_t id, int *idx, H5P_iterate_t iter_func, void *iter_data); herr_t H5Pcopy_prop(hid_t dst_id, hid_t src_id, const char *name); herr_t H5Premove(hid_t plist_id, const char *name); herr_t H5Punregister(hid_t pclass_id, const char *name); herr_t H5Pclose_class(hid_t plist_id); herr_t H5Pclose(hid_t plist_id); hid_t H5Pcopy(hid_t plist_id); herr_t H5Pset_attr_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense); herr_t H5Pget_attr_phase_change(hid_t plist_id, unsigned *max_compact, unsigned *min_dense); herr_t H5Pset_attr_creation_order(hid_t plist_id, unsigned crt_order_flags); herr_t H5Pget_attr_creation_order(hid_t plist_id, unsigned *crt_order_flags); herr_t H5Pset_obj_track_times(hid_t plist_id, hbool_t track_times); herr_t H5Pget_obj_track_times(hid_t plist_id, hbool_t *track_times); herr_t H5Pmodify_filter(hid_t plist_id, H5Z_filter_t filter, unsigned int flags, size_t cd_nelmts, const unsigned int cd_values[ ]); herr_t H5Pset_filter(hid_t plist_id, H5Z_filter_t filter, unsigned int flags, size_t cd_nelmts, const unsigned int c_values[]); int H5Pget_nfilters(hid_t plist_id); H5Z_filter_t H5Pget_filter2(hid_t plist_id, unsigned filter, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[], unsigned *filter_config ); herr_t H5Pget_filter_by_id2(hid_t plist_id, H5Z_filter_t id, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[] , unsigned *filter_config ); htri_t H5Pall_filters_avail(hid_t plist_id); herr_t H5Premove_filter(hid_t plist_id, H5Z_filter_t filter); herr_t H5Pset_deflate(hid_t plist_id, unsigned aggression); herr_t H5Pset_fletcher32(hid_t plist_id); herr_t H5Pget_version(hid_t plist_id, unsigned *boot , unsigned *freelist , unsigned *stab , unsigned *shhdr ); herr_t H5Pset_userblock(hid_t plist_id, hsize_t size); herr_t H5Pget_userblock(hid_t plist_id, hsize_t *size); herr_t H5Pset_sizes(hid_t plist_id, size_t sizeof_addr, size_t sizeof_size); herr_t H5Pget_sizes(hid_t plist_id, size_t *sizeof_addr , size_t *sizeof_size ); herr_t H5Pset_sym_k(hid_t plist_id, unsigned ik, unsigned lk); herr_t H5Pget_sym_k(hid_t plist_id, unsigned *ik , unsigned *lk ); herr_t H5Pset_istore_k(hid_t plist_id, unsigned ik); herr_t H5Pget_istore_k(hid_t plist_id, unsigned *ik ); herr_t H5Pset_shared_mesg_nindexes(hid_t plist_id, unsigned nindexes); herr_t H5Pget_shared_mesg_nindexes(hid_t plist_id, unsigned *nindexes); herr_t H5Pset_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned mesg_type_flags, unsigned min_mesg_size); herr_t H5Pget_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned *mesg_type_flags, unsigned *min_mesg_size); herr_t H5Pset_shared_mesg_phase_change(hid_t plist_id, unsigned max_list, unsigned min_btree); herr_t H5Pget_shared_mesg_phase_change(hid_t plist_id, unsigned *max_list, unsigned *min_btree); herr_t H5Pset_alignment(hid_t fapl_id, hsize_t threshold, hsize_t alignment); herr_t H5Pget_alignment(hid_t fapl_id, hsize_t *threshold , hsize_t *alignment ); herr_t H5Pset_driver(hid_t plist_id, hid_t driver_id, const void *driver_info); hid_t H5Pget_driver(hid_t plist_id); void *H5Pget_driver_info(hid_t plist_id); herr_t H5Pset_family_offset(hid_t fapl_id, hsize_t offset); herr_t H5Pget_family_offset(hid_t fapl_id, hsize_t *offset); herr_t H5Pset_multi_type(hid_t fapl_id, H5FD_mem_t type); herr_t H5Pget_multi_type(hid_t fapl_id, H5FD_mem_t *type); herr_t H5Pset_cache(hid_t plist_id, int mdc_nelmts, size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0); herr_t H5Pget_cache(hid_t plist_id, int *mdc_nelmts, size_t *rdcc_nslots , size_t *rdcc_nbytes , double *rdcc_w0); herr_t H5Pset_mdc_config(hid_t plist_id, H5AC_cache_config_t * config_ptr); herr_t H5Pget_mdc_config(hid_t plist_id, H5AC_cache_config_t * config_ptr); herr_t H5Pset_gc_references(hid_t fapl_id, unsigned gc_ref); herr_t H5Pget_gc_references(hid_t fapl_id, unsigned *gc_ref ); herr_t H5Pset_fclose_degree(hid_t fapl_id, H5F_close_degree_t degree); herr_t H5Pget_fclose_degree(hid_t fapl_id, H5F_close_degree_t *degree); herr_t H5Pset_meta_block_size(hid_t fapl_id, hsize_t size); herr_t H5Pget_meta_block_size(hid_t fapl_id, hsize_t *size ); herr_t H5Pset_sieve_buf_size(hid_t fapl_id, size_t size); herr_t H5Pget_sieve_buf_size(hid_t fapl_id, size_t *size ); herr_t H5Pset_small_data_block_size(hid_t fapl_id, hsize_t size); herr_t H5Pget_small_data_block_size(hid_t fapl_id, hsize_t *size ); herr_t H5Pset_libver_bounds(hid_t plist_id, H5F_libver_t low, H5F_libver_t high); herr_t H5Pget_libver_bounds(hid_t plist_id, H5F_libver_t *low, H5F_libver_t *high); herr_t H5Pset_elink_file_cache_size(hid_t plist_id, unsigned efc_size); herr_t H5Pget_elink_file_cache_size(hid_t plist_id, unsigned *efc_size); herr_t H5Pset_file_image(hid_t fapl_id, void *buf_ptr, size_t buf_len); herr_t H5Pget_file_image(hid_t fapl_id, void **buf_ptr_ptr, size_t *buf_len_ptr); herr_t H5Pset_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr); herr_t H5Pget_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr); herr_t H5Pset_core_write_tracking(hid_t fapl_id, hbool_t is_enabled, size_t page_size); herr_t H5Pget_core_write_tracking(hid_t fapl_id, hbool_t *is_enabled, size_t *page_size); herr_t H5Pset_layout(hid_t plist_id, H5D_layout_t layout); H5D_layout_t H5Pget_layout(hid_t plist_id); herr_t H5Pset_chunk(hid_t plist_id, int ndims, const hsize_t dim[ ]); int H5Pget_chunk(hid_t plist_id, int max_ndims, hsize_t dim[] ); herr_t H5Pset_external(hid_t plist_id, const char *name, off_t offset, hsize_t size); int H5Pget_external_count(hid_t plist_id); herr_t H5Pget_external(hid_t plist_id, unsigned idx, size_t name_size, char *name , off_t *offset , hsize_t *size ); herr_t H5Pset_szip(hid_t plist_id, unsigned options_mask, unsigned pixels_per_block); herr_t H5Pset_shuffle(hid_t plist_id); herr_t H5Pset_nbit(hid_t plist_id); herr_t H5Pset_scaleoffset(hid_t plist_id, H5Z_SO_scale_type_t scale_type, int scale_factor); herr_t H5Pset_fill_value(hid_t plist_id, hid_t type_id, const void *value); herr_t H5Pget_fill_value(hid_t plist_id, hid_t type_id, void *value ); herr_t H5Pfill_value_defined(hid_t plist, H5D_fill_value_t *status); herr_t H5Pset_alloc_time(hid_t plist_id, H5D_alloc_time_t alloc_time); herr_t H5Pget_alloc_time(hid_t plist_id, H5D_alloc_time_t *alloc_time ); herr_t H5Pset_fill_time(hid_t plist_id, H5D_fill_time_t fill_time); herr_t H5Pget_fill_time(hid_t plist_id, H5D_fill_time_t *fill_time ); herr_t H5Pset_chunk_cache(hid_t dapl_id, size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0); herr_t H5Pget_chunk_cache(hid_t dapl_id, size_t *rdcc_nslots , size_t *rdcc_nbytes , double *rdcc_w0 ); herr_t H5Pset_data_transform(hid_t plist_id, const char* expression); ssize_t H5Pget_data_transform(hid_t plist_id, char* expression , size_t size); herr_t H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg); size_t H5Pget_buffer(hid_t plist_id, void **tconv , void **bkg ); herr_t H5Pset_preserve(hid_t plist_id, hbool_t status); int H5Pget_preserve(hid_t plist_id); herr_t H5Pset_edc_check(hid_t plist_id, H5Z_EDC_t check); H5Z_EDC_t H5Pget_edc_check(hid_t plist_id); herr_t H5Pset_filter_callback(hid_t plist_id, H5Z_filter_func_t func, void* op_data); herr_t H5Pset_btree_ratios(hid_t plist_id, double left, double middle, double right); herr_t H5Pget_btree_ratios(hid_t plist_id, double *left , double *middle , double *right ); herr_t H5Pset_vlen_mem_manager(hid_t plist_id, H5MM_allocate_t alloc_func, void *alloc_info, H5MM_free_t free_func, void *free_info); herr_t H5Pget_vlen_mem_manager(hid_t plist_id, H5MM_allocate_t *alloc_func, void **alloc_info, H5MM_free_t *free_func, void **free_info); herr_t H5Pset_hyper_vector_size(hid_t fapl_id, size_t size); herr_t H5Pget_hyper_vector_size(hid_t fapl_id, size_t *size ); herr_t H5Pset_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t op, void* operate_data); herr_t H5Pget_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t *op, void** operate_data); herr_t H5Pset_create_intermediate_group(hid_t plist_id, unsigned crt_intmd); herr_t H5Pget_create_intermediate_group(hid_t plist_id, unsigned *crt_intmd ); herr_t H5Pset_local_heap_size_hint(hid_t plist_id, size_t size_hint); herr_t H5Pget_local_heap_size_hint(hid_t plist_id, size_t *size_hint ); herr_t H5Pset_link_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense); herr_t H5Pget_link_phase_change(hid_t plist_id, unsigned *max_compact , unsigned *min_dense ); herr_t H5Pset_est_link_info(hid_t plist_id, unsigned est_num_entries, unsigned est_name_len); herr_t H5Pget_est_link_info(hid_t plist_id, unsigned *est_num_entries , unsigned *est_name_len ); herr_t H5Pset_link_creation_order(hid_t plist_id, unsigned crt_order_flags); herr_t H5Pget_link_creation_order(hid_t plist_id, unsigned *crt_order_flags ); herr_t H5Pset_char_encoding(hid_t plist_id, H5T_cset_t encoding); herr_t H5Pget_char_encoding(hid_t plist_id, H5T_cset_t *encoding ); herr_t H5Pset_nlinks(hid_t plist_id, size_t nlinks); herr_t H5Pget_nlinks(hid_t plist_id, size_t *nlinks); herr_t H5Pset_elink_prefix(hid_t plist_id, const char *prefix); ssize_t H5Pget_elink_prefix(hid_t plist_id, char *prefix, size_t size); hid_t H5Pget_elink_fapl(hid_t lapl_id); herr_t H5Pset_elink_fapl(hid_t lapl_id, hid_t fapl_id); herr_t H5Pset_elink_acc_flags(hid_t lapl_id, unsigned flags); herr_t H5Pget_elink_acc_flags(hid_t lapl_id, unsigned *flags); herr_t H5Pset_elink_cb(hid_t lapl_id, H5L_elink_traverse_t func, void *op_data); herr_t H5Pget_elink_cb(hid_t lapl_id, H5L_elink_traverse_t *func, void **op_data); herr_t H5Pset_copy_object(hid_t plist_id, unsigned crt_intmd); herr_t H5Pget_copy_object(hid_t plist_id, unsigned *crt_intmd ); herr_t H5Padd_merge_committed_dtype_path(hid_t plist_id, const char *path); herr_t H5Pfree_merge_committed_dtype_paths(hid_t plist_id); herr_t H5Pset_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t func, void *op_data); herr_t H5Pget_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t *func, void **op_data); # 473 "/usr/include/H5Ppublic.h" 3 4 herr_t H5Pregister1(hid_t cls_id, const char *name, size_t size, void *def_value, H5P_prp_create_func_t prp_create, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy, H5P_prp_close_func_t prp_close); herr_t H5Pinsert1(hid_t plist_id, const char *name, size_t size, void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy, H5P_prp_close_func_t prp_close); H5Z_filter_t H5Pget_filter1(hid_t plist_id, unsigned filter, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[]); herr_t H5Pget_filter_by_id1(hid_t plist_id, H5Z_filter_t id, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[] ); } # 37 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5Rpublic.h" 1 3 4 # 30 "/usr/include/H5Rpublic.h" 3 4 typedef enum { H5R_BADTYPE = (-1), H5R_OBJECT, H5R_DATASET_REGION, H5R_MAXTYPE } H5R_type_t; # 44 "/usr/include/H5Rpublic.h" 3 4 typedef haddr_t hobj_ref_t; typedef unsigned char hdset_reg_ref_t[(sizeof(haddr_t)+4)]; extern "C" { herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, hid_t space_id); hid_t H5Rdereference(hid_t dataset, H5R_type_t ref_type, const void *ref); hid_t H5Rget_region(hid_t dataset, H5R_type_t ref_type, const void *ref); herr_t H5Rget_obj_type2(hid_t id, H5R_type_t ref_type, const void *_ref, H5O_type_t *obj_type); ssize_t H5Rget_name(hid_t loc_id, H5R_type_t ref_type, const void *ref, char *name , size_t size); # 83 "/usr/include/H5Rpublic.h" 3 4 H5G_obj_t H5Rget_obj_type1(hid_t id, H5R_type_t ref_type, const void *_ref); } # 38 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5Spublic.h" 1 3 4 # 34 "/usr/include/H5Spublic.h" 3 4 typedef enum H5S_class_t { H5S_NO_CLASS = -1, H5S_SCALAR = 0, H5S_SIMPLE = 1, H5S_NULL = 2 } H5S_class_t; typedef enum H5S_seloper_t { H5S_SELECT_NOOP = -1, H5S_SELECT_SET = 0, H5S_SELECT_OR, H5S_SELECT_AND, H5S_SELECT_XOR, H5S_SELECT_NOTB, H5S_SELECT_NOTA, H5S_SELECT_APPEND, H5S_SELECT_PREPEND, H5S_SELECT_INVALID } H5S_seloper_t; typedef enum { H5S_SEL_ERROR = -1, H5S_SEL_NONE = 0, H5S_SEL_POINTS = 1, H5S_SEL_HYPERSLABS = 2, H5S_SEL_ALL = 3, H5S_SEL_N }H5S_sel_type; extern "C" { hid_t H5Screate(H5S_class_t type); hid_t H5Screate_simple(int rank, const hsize_t dims[], const hsize_t maxdims[]); herr_t H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[], const hsize_t max[]); hid_t H5Scopy(hid_t space_id); herr_t H5Sclose(hid_t space_id); herr_t H5Sencode(hid_t obj_id, void *buf, size_t *nalloc); hid_t H5Sdecode(const void *buf); hssize_t H5Sget_simple_extent_npoints(hid_t space_id); int H5Sget_simple_extent_ndims(hid_t space_id); int H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[], hsize_t maxdims[]); htri_t H5Sis_simple(hid_t space_id); hssize_t H5Sget_select_npoints(hid_t spaceid); herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[], const hsize_t _stride[], const hsize_t count[], const hsize_t _block[]); # 128 "/usr/include/H5Spublic.h" 3 4 herr_t H5Sselect_elements(hid_t space_id, H5S_seloper_t op, size_t num_elem, const hsize_t *coord); H5S_class_t H5Sget_simple_extent_type(hid_t space_id); herr_t H5Sset_extent_none(hid_t space_id); herr_t H5Sextent_copy(hid_t dst_id,hid_t src_id); htri_t H5Sextent_equal(hid_t sid1, hid_t sid2); herr_t H5Sselect_all(hid_t spaceid); herr_t H5Sselect_none(hid_t spaceid); herr_t H5Soffset_simple(hid_t space_id, const hssize_t *offset); htri_t H5Sselect_valid(hid_t spaceid); hssize_t H5Sget_select_hyper_nblocks(hid_t spaceid); hssize_t H5Sget_select_elem_npoints(hid_t spaceid); herr_t H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock, hsize_t numblocks, hsize_t buf[ ]); herr_t H5Sget_select_elem_pointlist(hid_t spaceid, hsize_t startpoint, hsize_t numpoints, hsize_t buf[ ]); herr_t H5Sget_select_bounds(hid_t spaceid, hsize_t start[], hsize_t end[]); H5S_sel_type H5Sget_select_type(hid_t spaceid); } # 39 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDcore.h" 1 3 4 # 30 "/usr/include/H5FDcore.h" 3 4 extern "C" { hid_t H5FD_core_init(void); void H5FD_core_term(void); herr_t H5Pset_fapl_core(hid_t fapl_id, size_t increment, hbool_t backing_store); herr_t H5Pget_fapl_core(hid_t fapl_id, size_t *increment , hbool_t *backing_store ); } # 44 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDfamily.h" 1 3 4 # 30 "/usr/include/H5FDfamily.h" 3 4 extern "C" { hid_t H5FD_family_init(void); void H5FD_family_term(void); herr_t H5Pset_fapl_family(hid_t fapl_id, hsize_t memb_size, hid_t memb_fapl_id); herr_t H5Pget_fapl_family(hid_t fapl_id, hsize_t *memb_size , hid_t *memb_fapl_id ); } # 45 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDlog.h" 1 3 4 # 60 "/usr/include/H5FDlog.h" 3 4 extern "C" { hid_t H5FD_log_init(void); void H5FD_log_term(void); herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); } # 46 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDmpi.h" 1 3 4 # 40 "/usr/include/H5FDmpi.h" 3 4 typedef enum H5FD_mpio_xfer_t { H5FD_MPIO_INDEPENDENT = 0, H5FD_MPIO_COLLECTIVE } H5FD_mpio_xfer_t; typedef enum H5FD_mpio_chunk_opt_t { H5FD_MPIO_CHUNK_DEFAULT = 0, H5FD_MPIO_CHUNK_ONE_IO, H5FD_MPIO_CHUNK_MULTI_IO } H5FD_mpio_chunk_opt_t; typedef enum H5FD_mpio_collective_opt_t { H5FD_MPIO_COLLECTIVE_IO = 0, H5FD_MPIO_INDIVIDUAL_IO } H5FD_mpio_collective_opt_t; # 1 "/usr/include/H5FDmpio.h" 1 3 4 # 60 "/usr/include/H5FDmpi.h" 2 3 4 # 47 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDmulti.h" 1 3 4 # 32 "/usr/include/H5FDmulti.h" 3 4 extern "C" { hid_t H5FD_multi_init(void); void H5FD_multi_term(void); herr_t H5Pset_fapl_multi(hid_t fapl_id, const H5FD_mem_t *memb_map, const hid_t *memb_fapl, const char * const *memb_name, const haddr_t *memb_addr, hbool_t relax); herr_t H5Pget_fapl_multi(hid_t fapl_id, H5FD_mem_t *memb_map , hid_t *memb_fapl , char **memb_name , haddr_t *memb_addr , hbool_t *relax ); herr_t H5Pset_fapl_split(hid_t fapl, const char *meta_ext, hid_t meta_plist_id, const char *raw_ext, hid_t raw_plist_id); } # 48 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDsec2.h" 1 3 4 # 30 "/usr/include/H5FDsec2.h" 3 4 extern "C" { hid_t H5FD_sec2_init(void); void H5FD_sec2_term(void); herr_t H5Pset_fapl_sec2(hid_t fapl_id); } # 49 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDstdio.h" 1 3 4 # 30 "/usr/include/H5FDstdio.h" 3 4 extern "C" { hid_t H5FD_stdio_init(void); void H5FD_stdio_term(void); herr_t H5Pset_fapl_stdio(hid_t fapl_id); } # 50 "/usr/include/hdf5.h" 2 3 4 # 1 "/usr/include/H5FDdirect.h" 1 3 4 # 54 "/usr/include/hdf5.h" 2 3 4 # 3 "/tmp/petsc-F9l5hH/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['hdf5.h'] in ['/usr/include', '/usr/local/include'] Popping language Cxx Checking for functions [H5Pset_fapl_mpio] in library ['/usr/lib/libhdf5.so', 'libm.a'] [] Pushing language Cxx Executing: mpic++ -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char H5Pset_fapl_mpio(); static void _check_H5Pset_fapl_mpio() { H5Pset_fapl_mpio(); } #ifdef __cplusplus } #endif int main() { _check_H5Pset_fapl_mpio();; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/config.libraries/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -Wl,-rpath,/usr/lib -L/usr/lib -lhdf5 -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-F9l5hH/config.libraries/conftest.o: In function `main': conftest.cc:(.text.startup+0x5): undefined reference to `H5Pset_fapl_mpio' collect2: error: ld returned 1 exit status Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.hdf5(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:731) TESTING: checkSharedLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:731) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.ascem-io(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pflotran(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST locateCMake from config.packages.cmake(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/cmake.py:33) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:33) Looking for default CMake executable Checking for program ./cmake...not found Checking for program /home/mpovolot/bin/cmake...not found Checking for program /bin/cmake...found Defined make macro "CMAKE" to "/bin/cmake" Looking for default CTest executable Checking for program ./ctest...not found Checking for program /home/mpovolot/bin/ctest...not found Checking for program /bin/ctest...found Defined make macro "CTEST" to "/bin/ctest" ================================================================================ TEST alternateConfigureLibrary from config.packages.alquimia(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.unittestcpp(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/scalarTypes.py:37) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language Cxx All intermediate test results are stored in /tmp/petsc-F9l5hH/PETSc.options.scalarTypes Executing: mpic++ -c -o /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/PETSc.options.scalarTypes -fopenmp -O3 /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_ISNORMAL" to "1" Executing: mpic++ -c -o /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/PETSc.options.scalarTypes -fopenmp -O3 /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_ISNAN" to "1" Executing: mpic++ -c -o /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/PETSc.options.scalarTypes -fopenmp -O3 /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language CXX Popping language CXX Executing: mpic++ -o /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest -fopenmp -O3 /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.o -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Defined "HAVE_ISINF" to "1" Executing: mpic++ -c -o /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/PETSc.options.scalarTypes -fopenmp -O3 /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc: In function ?int main()?: /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc:6:32: error: ?_isnan? was not declared in this scope double b = 2.0;int a = _isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Compile failed inside link Executing: mpic++ -c -o /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.libraries -I/tmp/petsc-F9l5hH/PETSc.options.scalarTypes -fopenmp -O3 /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc: In function ?int main()?: /tmp/petsc-F9l5hH/PETSc.options.scalarTypes/conftest.cc:6:33: error: ?_finite? was not declared in this scope double b = 2.0;int a = _finite(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Compile failed inside link Popping language Cxx ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/PETSc/options/scalarTypes.py:77) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:77) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.viennacl(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fblaslapack(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/BlasLapack.py:333) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:333) ================================================================================ Checking for a functional BLAS and LAPACK in User specified BLAS/LAPACK library ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/BlasLapack.py:106) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:106) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['1'] ['-L/usr/local/lib', '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/usr/local/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -I/tmp/petsc-F9l5hH/config.packages.pthread -I/tmp/petsc-F9l5hH/config.packages.valgrind -I/tmp/petsc-F9l5hH/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -l1 -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -l1 collect2: error: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['1'] ['-L/usr/local/lib', '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/usr/local/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -I/tmp/petsc-F9l5hH/config.packages.pthread -I/tmp/petsc-F9l5hH/config.packages.valgrind -I/tmp/petsc-F9l5hH/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -l1 -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -l1 collect2: error: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['1'] ['-L/usr/local/lib', '-L/usr/lib/gcc/x86_64-redhat-linux/4.9.2', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/usr/local/lib', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: mpicc -c -o /tmp/petsc-F9l5hH/config.libraries/conftest.o -I/tmp/petsc-F9l5hH/config.setCompilers -I/tmp/petsc-F9l5hH/config.compilers -I/tmp/petsc-F9l5hH/config.utilities.closure -I/tmp/petsc-F9l5hH/config.headers -I/tmp/petsc-F9l5hH/config.utilities.cacheDetails -I/tmp/petsc-F9l5hH/config.atomics -I/tmp/petsc-F9l5hH/config.functions -I/tmp/petsc-F9l5hH/config.utilities.featureTestMacros -I/tmp/petsc-F9l5hH/config.utilities.missing -I/tmp/petsc-F9l5hH/config.types -I/tmp/petsc-F9l5hH/config.packages.MPI -I/tmp/petsc-F9l5hH/config.packages.pthread -I/tmp/petsc-F9l5hH/config.packages.valgrind -I/tmp/petsc-F9l5hH/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /tmp/petsc-F9l5hH/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -O3 /tmp/petsc-F9l5hH/config.libraries/conftest.o -l1 -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -lmpifort -lgfortran -lm -Wl,-rpath,/usr/local/lib -lgfortran -lm -lquadmath -lm -L/usr/local/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -ldl -Wl,-rpath,/usr/local/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /bin/ld: cannot find -l1 collect2: error: ld returned 1 exit status Popping language C Unknown name mangling in BLAS/LAPACK **** Configure header /tmp/petsc-F9l5hH/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBZ #define PETSC_HAVE_LIBZ 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBCRYPTO #define PETSC_HAVE_LIBCRYPTO 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LOG2 #define PETSC_HAVE_LOG2 1 #endif #ifndef PETSC_HAVE_LIBHDF5 #define PETSC_HAVE_LIBHDF5 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBSSL #define PETSC_HAVE_LIBSSL 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "linux" #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_HAVE_ISNORMAL #define PETSC_HAVE_ISNORMAL 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_USE_VISIBILITY_C #define PETSC_USE_VISIBILITY_C 1 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_USE_VISIBILITY_CXX #define PETSC_USE_VISIBILITY_CXX 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_CLANGUAGE_CXX #define PETSC_CLANGUAGE_CXX 1 #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_IALLREDUCE #define PETSC_HAVE_MPI_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_CONTIGUOUS #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #endif #ifndef PETSC_HAVE_MPI_INT64_T #define PETSC_HAVE_MPI_INT64_T 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPICH_NUMVERSION #define PETSC_HAVE_MPICH_NUMVERSION 30200300 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_IBARRIER #define PETSC_HAVE_MPI_IBARRIER 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_LOCAL #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_SIZE #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #endif #ifndef PETSC_USE_MALLOC_COALESCED #define PETSC_USE_MALLOC_COALESCED 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC__DEFAULT_SOURCE #define PETSC__DEFAULT_SOURCE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_HAVE_SCHED_CPU_SET_T #define PETSC_HAVE_SCHED_CPU_SET_T 1 #endif #ifndef PETSC_HAVE_PTHREAD_BARRIER_T #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** C specific Configure header /tmp/petsc-F9l5hH/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- You set a value for --with-blas-lapack-lib=, but ['1'] cannot be used ******************************************************************************* File "./config/configure.py", line 406, in petsc_configure framework.configure(out = sys.stdout) File "/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/framework.py", line 1090, in configure self.processChildren() File "/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/framework.py", line 1079, in processChildren self.serialEvaluation(self.childGraph) File "/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/framework.py", line 1060, in serialEvaluation child.configure() File "/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/BlasLapack.py", line 544, in configure self.executeTest(self.configureLibrary) File "/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/BlasLapack.py", line 341, in configureLibrary for (name, blasLibrary, lapackLibrary, self.useCompatibilityLibs) in self.generateGuesses(): File "/home/mpovolot/NEMO5/NEMO/libs/petsc/build-real/config/BuildSystem/config/packages/BlasLapack.py", line 181, in generateGuesses raise RuntimeError('You set a value for --with-blas-lapack-lib=, but '+str(self.argDB['with-blas-lapack-lib'])+' cannot be used\n') ================================================================================ Finishing Configure Run at Sun Nov 6 01:52:24 2016 ================================================================================ From knepley at gmail.com Sun Nov 6 08:35:37 2016 From: knepley at gmail.com (Matthew Knepley) Date: Sun, 6 Nov 2016 08:35:37 -0600 Subject: [petsc-users] strange error during configuration In-Reply-To: <052986c7-1fb4-390e-bf86-e905385a6a56@purdue.edu> References: <052986c7-1fb4-390e-bf86-e905385a6a56@purdue.edu> Message-ID: On Sun, Nov 6, 2016 at 1:03 AM, Michael Povolotskyi wrote: > Dear Petsc developers, > > I'm trying to execute > > ./config/configure.py --with-x=0 --with-hdf5 \ > --with-hdf5-include=/usr/include \ > --with-hdf5-lib=/usr/lib/libhdf5.so\ > --with-scalar-type=real --with-single-library=1\ > --with-pic=1 --with-shared-libraries=0 --with-log=0 \ > --with-clanguage=C++ --CXXFLAGS=-fopenmp --with-fortran=1 \ > --with-debugging=0 --with-cc="mpicc" --with-fc="mpif90" > --with-cxx="mpic++" COPTFLAGS="-O3" CXXOPTFLAGS="-O3" FOPTFLAGS="-O3" > --download-metis=1 \ > --download-parmetis=1 --with-valgrind-dir= /usr/include/valgrind \ > --download-mumps=1 --with-fortran-kernels=0 \ > --download-superlu_dist=1 \ > --with-blas-lapack-lib ="-L/opt/intel/mkl/lib/intel64 > -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core " \ > ^ It looks like you have a space here Matt > --with-blacs-lib=/opt/intel/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so > \ > --with-blacs-include=/opt/intel/mkl/include \ > --with-scalapack-lib="-Wl,-rpath,/opt/intel/mkl/lib/intel64 > -L/opt/intel/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core > -lpthread -L/opt/intel/mkl/lib/intel64 -lmkl_scalapack_lp64 > -lmkl_blacs_intelmpi_lp64" \ > --with-scalapack-include=/opt/intel/mkl/include > > > and I get a strange error: > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): > ------------------------------------------------------------ > ------------------- > You set a value for --with-blas-lapack-lib=, but ['1'] cannot be used > > The log file is attached. > > Please advise. > > Thank you, > > Michael. > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Sun Nov 6 11:37:07 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Sun, 6 Nov 2016 11:37:07 -0600 Subject: [petsc-users] -pc_asm_type none In-Reply-To: References: <39CE2BF5-F195-4C18-9BB6-79E9F763C5F4@mcs.anl.gov> Message-ID: <86BC3110-9715-45E8-B4B8-45B958DF66F4@mcs.anl.gov> > On Nov 5, 2016, at 11:47 PM, Fande Kong wrote: > > > > On Sat, Nov 5, 2016 at 10:10 PM, Barry Smith wrote: > > > On Nov 5, 2016, at 9:35 PM, Fande Kong wrote: > > > > Hi All, > > > > I know what "basic", "restrict" and "interpolate" represent, but have no idea about "none". Anybody knows what does mean when using "-pc_asm_type none"? > > PC_ASM_NONE - Residuals from ghost points are not used, computed ghost values are > $ discarded. > $ Not very good. > > In the P (A_subdomain)^-1 R both the R and the P skip values in the overlap region. Sort of the worst of restrict and interpolate. > > Thanks, Barry. > > Did some experiments, and I observed that "none" works better than "basic" for an incompressible Navier-Stokes defined on a complex domain. Is it normal? It is certainly possible, I don't know if it is normal. Once you get away from simply uniformly elliptic model problems all kinds of strange things can happen. > > I think for PC_ASM_BASIC, we could average the values on the overlap region. Right now, we are just simply adding all values from different processors together for the overlap region. Yes, there are all kinds of variants. One can weight the values based on how far away they are from the subdomain boundary, one can use different boundary conditions for the subdomains .... Even doing something simple like averaging requires more information, you need to know how many subdomains contribute to each grid point. Barry > > There are some literatures that shows the averaged version works similarly as the restrict/interpolate version. > > Fande, > > > > > > > > > Regards, > > > > Fande Kong, From leejearl at 126.com Sun Nov 6 20:50:24 2016 From: leejearl at 126.com (leejearl) Date: Mon, 7 Nov 2016 10:50:24 +0800 Subject: [petsc-users] how to output components of a section In-Reply-To: <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> Message-ID: <94fd3815-37a2-d847-3571-2961681e51d9@126.com> Hi, Barry: I must have some make some mistakes. I post the code as follows: Vec subX, X; DM subdm; IS subIS; PetscInt numSubFields = 2; PetscInt subFields[2]; subFields[0] = 0; subFields[1] =1 ; ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, &subdm);CHKERRQ(ierr); ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); ierr = PetscObjectSetName((PetscObject) subX, "sol.");CHKERRQ(ierr); ierr = PetscViewerSetType(*viewer, PETSCVIEWERVTK);CHKERRQ(ierr); ierr = PetscViewerPushFormat(*viewer, PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); ierr = PetscViewerFileSetName(*viewer, "subsol.vtu");CHKERRQ(ierr); ierr = VecView(subX, viewer);CHKERRQ(ierr); ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); DMDestroy(&subdm); ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); There are three fields in dm, and I want to obtain the vector of the two of them. But, I can not get the output file ?subsol.vtu?. Can you help me with the code? Thanks leejearl On 2016?11?06? 12:21, Barry Smith wrote: >> On Nov 5, 2016, at 8:36 PM, leejearl wrote: >> >> Hi Sander: >> Thank you for your advices, and it works. But it is only available in th local vector. > This should work on the global vector. Please send the full output of the error messages when used with a global vector. > > Barry > >> Is there any methods to reach this purposes in the global vector? >> Thanks >> leejearl >> On 2016?11?05? 19:29, Sander Arens wrote: >>> You can first obtain an IS with >>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMCreateSubDM.html >>> and with that you can obtain a subvector with >>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Vec/VecGetSubVector.html >>> which you can then view the usual way. >>> >>> Thanks, >>> Sander >>> >>> On 5 November 2016 at 12:17, leejearl wrote: >>> Hi, all: >>> >>> I meet a problems which I can not overcome. The programe is like the code in >>> >>> "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/examples/tutorials/ex1.c.html". >>> >>> The code create a section which has three fields: u,v,w. How can I output the fields u and v without together with w? >>> >>> Thanks! >>> >>> >>> leejearl >>> >>> >>> >>> From Sander.Arens at ugent.be Mon Nov 7 01:35:01 2016 From: Sander.Arens at ugent.be (Sander Arens) Date: Mon, 7 Nov 2016 08:35:01 +0100 Subject: [petsc-users] how to output components of a section In-Reply-To: <94fd3815-37a2-d847-3571-2961681e51d9@126.com> References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> <94fd3815-37a2-d847-3571-2961681e51d9@126.com> Message-ID: Does it work if you put ierr = VecSetDM(subX, subdm);CHKERRQ(ierr); before the VecView? Thanks, Sander On 7 November 2016 at 03:50, leejearl wrote: > Hi, Barry: > I must have some make some mistakes. I post the code as follows: > Vec subX, X; > DM subdm; > IS subIS; > PetscInt numSubFields = 2; > PetscInt subFields[2]; > subFields[0] = 0; subFields[1] =1 ; > ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, > &subdm);CHKERRQ(ierr); > ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); > ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); > ierr = PetscObjectSetName((PetscObject) subX, > "sol.");CHKERRQ(ierr); > ierr = PetscViewerSetType(*viewer, PETSCVIEWERVTK);CHKERRQ(ierr); > ierr = PetscViewerPushFormat(*viewer, PETSC_VIEWER_VTK_VTU);CHKERRQ( > ierr); > ierr = PetscViewerFileSetName(*viewer, > "subsol.vtu");CHKERRQ(ierr); > ierr = VecView(subX, viewer);CHKERRQ(ierr); > ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); > ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); > DMDestroy(&subdm); > ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); > > There are three fields in dm, and I want to obtain the vector of the two > of them. But, I can not > get the output file ?subsol.vtu?. Can you help me with the code? > > Thanks > leejearl > > On 2016?11?06? 12:21, Barry Smith wrote: > >> On Nov 5, 2016, at 8:36 PM, leejearl wrote: >>> >>> Hi Sander: >>> Thank you for your advices, and it works. But it is only available >>> in th local vector. >>> >> This should work on the global vector. Please send the full output of >> the error messages when used with a global vector. >> >> Barry >> >> Is there any methods to reach this purposes in the global vector? >>> Thanks >>> leejearl >>> On 2016?11?05? 19:29, Sander Arens wrote: >>> >>>> You can first obtain an IS with >>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/ >>>> DM/DMCreateSubDM.html >>>> and with that you can obtain a subvector with >>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/ >>>> Vec/VecGetSubVector.html >>>> which you can then view the usual way. >>>> >>>> Thanks, >>>> Sander >>>> >>>> On 5 November 2016 at 12:17, leejearl wrote: >>>> Hi, all: >>>> >>>> I meet a problems which I can not overcome. The programe is like >>>> the code in >>>> >>>> "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/ple >>>> x/examples/tutorials/ex1.c.html". >>>> >>>> The code create a section which has three fields: u,v,w. How can I >>>> output the fields u and v without together with w? >>>> >>>> Thanks! >>>> >>>> >>>> leejearl >>>> >>>> >>>> >>>> >>>> > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From leejearl at 126.com Mon Nov 7 02:08:32 2016 From: leejearl at 126.com (leejearl) Date: Mon, 7 Nov 2016 16:08:32 +0800 Subject: [petsc-users] how to output components of a section In-Reply-To: References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> <94fd3815-37a2-d847-3571-2961681e51d9@126.com> Message-ID: Hi Sander: Thank your for your assistance, but it is still not works. The code is now as follows: Vec subX, X; DM subdm; IS subIS; PetscInt numSubFields = 2; PetscInt subFields[2]; subFields[0] = 0; subFields[1] =1 ; ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, &subdm);CHKERRQ(ierr); ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); ierr = VecSetDM(subX, dm);CHKERRQ(ierr); ierr = PetscObjectSetName((PetscObject) subX, "sol.");CHKERRQ(ierr); ierr = PetscViewerSetType(*viewer, PETSCVIEWERVTK);CHKERRQ(ierr); ierr = PetscViewerPushFormat(*viewer, PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); ierr = PetscViewerFileSetName(*viewer, "subsol.vtu");CHKERRQ(ierr); ierr = VecView(subX, viewer);CHKERRQ(ierr); ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); DMDestroy(&subdm); ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); I have add "VecSetDm", but it has not output file. Thanks leejearl On 2016?11?07? 15:35, Sander Arens wrote: > Does it work if you put > ierr = VecSetDM(subX, subdm);CHKERRQ(ierr); > before the VecView? > > Thanks, > Sander > > On 7 November 2016 at 03:50, leejearl > wrote: > > Hi, Barry: > I must have some make some mistakes. I post the code as follows: > Vec subX, X; > DM subdm; > IS subIS; > PetscInt numSubFields = 2; > PetscInt subFields[2]; > subFields[0] = 0; subFields[1] =1 ; > ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, > &subdm);CHKERRQ(ierr); > ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); > ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); > ierr = PetscObjectSetName((PetscObject) subX, > "sol.");CHKERRQ(ierr); > ierr = PetscViewerSetType(*viewer, > PETSCVIEWERVTK);CHKERRQ(ierr); > ierr = PetscViewerPushFormat(*viewer, > PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); > ierr = PetscViewerFileSetName(*viewer, > "subsol.vtu");CHKERRQ(ierr); > ierr = VecView(subX, viewer);CHKERRQ(ierr); > ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); > ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); > DMDestroy(&subdm); > ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); > > There are three fields in dm, and I want to obtain the vector of > the two of them. But, I can not > get the output file ?subsol.vtu?. Can you help me with the code? > > Thanks > leejearl > > On 2016?11?06? 12:21, Barry Smith wrote: > > On Nov 5, 2016, at 8:36 PM, leejearl > wrote: > > Hi Sander: > Thank you for your advices, and it works. But it is > only available in th local vector. > > This should work on the global vector. Please send the full > output of the error messages when used with a global vector. > > Barry > > Is there any methods to reach this purposes in the global > vector? > Thanks > leejearl > On 2016?11?05? 19:29, Sander Arens wrote: > > You can first obtain an IS with > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMCreateSubDM.html > > and with that you can obtain a subvector with > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Vec/VecGetSubVector.html > > which you can then view the usual way. > > Thanks, > Sander > > On 5 November 2016 at 12:17, leejearl > > wrote: > Hi, all: > > I meet a problems which I can not overcome. The > programe is like the code in > > "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/examples/tutorials/ex1.c.html > ". > > The code create a section which has three fields: > u,v,w. How can I output the fields u and v without > together with w? > > Thanks! > > > leejearl > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From juan at tf.uni-kiel.de Mon Nov 7 03:49:17 2016 From: juan at tf.uni-kiel.de (Julian Andrej) Date: Mon, 7 Nov 2016 10:49:17 +0100 Subject: [petsc-users] PetscFE and TS Message-ID: Hello, i'm using PetscFE in combination with SNES and a hand written backward euler solver right now and like to hand that over to TS. I have been fiddling quite a while getting TS to work with PetscFE and have encountered a few unclarities. I have looked at examples which are outdated i guess (src/ts/examples/tutorials/ex32.c) and i am confused on how i have to formulate the discretization of the jacobian and the residual. It seems obvious to use the DMTSSetIFunctionLocal and DMTSSetIJacobianLocal functions because there are prepared wrappers from DMPlexTSComputeIFunctionFEM and DMPlexTSComputeIJacobianFEM. I need a Mass matrix for my problem, is that formed from the function space information or do i have to form it myself? Is there any working example which uses PetscFE and TS to form the DMTSSetIFunctionLocal and DMTSSetIJacobianLocal? (grepping the tree tells me "no" unfortunately). Regards Julian From mailinglists at xgm.de Mon Nov 7 03:53:06 2016 From: mailinglists at xgm.de (Florian Lindner) Date: Mon, 7 Nov 2016 10:53:06 +0100 Subject: [petsc-users] Seeking help for analyzing non-convergence (KSP) In-Reply-To: <153764A7-94BC-433F-9610-E374982175FA@mcs.anl.gov> References: <153764A7-94BC-433F-9610-E374982175FA@mcs.anl.gov> Message-ID: <07ce2ba2-9270-f909-0634-fe6ce023e2e6@xgm.de> Hey Barry! Am 04.11.2016 um 18:42 schrieb Barry Smith: > > Try running on one process with the SuperLU direct solver (note superlu NOT superlu_dist). You need to ./configure PETSc with --download-superlu then run your code with -pc_type lu -pc_factor_mat_solver_package superlu I am having some problems making superlu work, when configuring with --download-superlu. Firstly, I was getting "libsuperlu.so.5: cannot open shared object file: No such file or directory" errors. They vanished after adding petsc/arch-linux2-c-debug/lib to LD_LIBRARY_PATH. But my application (C and python) still do not find the solver: Traceback (most recent call last): File "RBF_Load.py", line 46, in main() File "RBF_Load.py", line 38, in main solver.solve(b, x) File "PETSc/KSP.pyx", line 384, in petsc4py.PETSc.KSP.solve (src/petsc4py.PETSc.c:154741) petsc4py.PETSc.Error: error code 92 [0] KSPSolve() line 600 in /data/scratch/lindnefn/software/petsc/src/ksp/ksp/interface/itfunc.c [0] KSPSetUpOnBlocks() line 220 in /data/scratch/lindnefn/software/petsc/src/ksp/ksp/interface/itfunc.c [0] PCSetUpOnBlocks() line 1001 in /data/scratch/lindnefn/software/petsc/src/ksp/pc/interface/precon.c [0] PCSetUpOnBlocks_ASM() line 428 in /data/scratch/lindnefn/software/petsc/src/ksp/pc/impls/asm/asm.c [0] KSPSetUp() line 390 in /data/scratch/lindnefn/software/petsc/src/ksp/ksp/interface/itfunc.c [0] PCSetUp() line 968 in /data/scratch/lindnefn/software/petsc/src/ksp/pc/interface/precon.c [0] PCSetUp_LU() line 134 in /data/scratch/lindnefn/software/petsc/src/ksp/pc/impls/factor/lu/lu.c [0] MatGetFactor() line 4244 in /data/scratch/lindnefn/software/petsc/src/mat/interface/matrix.c [0] See http://www.mcs.anl.gov/petsc/documentation/linearsolvertable.html for possible LU and Cholesky solvers [0] Could not locate a solver package. Perhaps you must ./configure with --download- I configured with python2 configure --with-debugging=1 --download-petsc4py --download-mpi4py --download-superlu on a recent checkout of the maint branch. make PETSC_DIR=/data/scratch/lindnefn/software/petsc PETSC_ARCH=arch-linux2-c-debug test reported no errors. Best Thanks, Florian > > Barry > >> On Nov 4, 2016, at 10:44 AM, Florian Lindner wrote: >> >> Hello, >> >> I have a matrix C that is the result of an RBF interpolation. >> >> It is constructured like that: >> >> c_ij = phi( |x_i - x_j| ) >> >> x are supporting points. phi is the radial basis functions, here it is a Gaussian: phi(r) = exp( -(1.5*r)^2 ). >> >> The system is augmented by a global polynomial, which results in the first 3 rows being dense. >> >> The matrix is symmetric and of size 2309. It is also sparse since the basis functions are decaying very rapidly. A >> picture of the sparsity pattern I have uploaded at [1] >> >> I am having big trouble solving the system. >> >> Using default settings on 10 procs I'm not achieving convergence after 40k iterations: >> >> 40000 KSP preconditioned resid norm 2.525546749843e+01 true resid norm 5.470906445602e+01 ||r(i)||/||b|| 3.122197420093e-02 >> >> I have uploaded a small python script using petsc4py that simply loads the matrix and the rhs and tries to solve it. It >> is bundled with the matrix and rhs and available at [2] (650 KB). Some paths in the Python source need to be adapted. >> >> The condition number using -pc_type svd -pc_svd_monitor did not work, due to incompatible matrix formats. >> >> The condition number estimate using -pc_type none -ksp_type gmres -ksp_monitor_singular_value -ksp_gmres_restart 1000 >> has been running for over half an hour now, its current line is: >> >> 5655 KSP preconditioned resid norm 9.481821216790e-02 true resid norm 9.481821212512e-02 ||r(i)||/||b|| 5.411190635748e-05 >> 5655 KSP Residual norm 9.481821216790e-02 % max 2.853532248325e+02 min 1.073886912921e-06 max/min 2.657199947212e+08 >> >> The Eigenvalues, computed with -ksp_compute_eigenvalues -ksp_gmres_restart 1000 -pc_type none did not converge after 40k >> iterations, bit they eigenvalues were printed. They are all real, none is zero, but some are pretty close. I've pasted >> them at the end of the mail. >> >> I tried a bunch of different PCs, but I'm somehow helpless on how to analyse that problem more systematically. >> >> I know that RBF interpolation tends to produce badly conditioned matrices, but this seems to be (almost) singular. I >> have scrutinized my algorithms and in most cases it works just fine, converges and the output results are sane. >> >> I am grateful for any help! >> >> Best, >> Florian >> >> >> [1] http://xgm.de/upload/sparsity.png >> [2] http://xgm.de/upload/RBF.tar.bz2 >> >> Eigenvalues: >> >> Iteratively computed eigenvalues >> -276.515 + 0.i >> -276.348 + 0.i >> -43.5577 + 0.i >> 3.27753e-09 + 0.i >> 5.09352e-06 + 0.i >> 1.56431e-05 + 0.i >> 2.79046e-05 + 0.i >> 0.000145571 + 0.i >> 0.000184333 + 0.i >> 0.000283665 + 0.i >> 0.000395128 + 0.i >> 0.000488579 + 0.i >> 0.000568982 + 0.i >> 0.000704054 + 0.i >> 0.000864538 + 0.i >> 0.00101309 + 0.i >> 0.00119913 + 0.i >> 0.00142954 + 0.i >> 0.00156907 + 0.i >> 0.00178931 + 0.i >> 0.00200295 + 0.i >> 0.00223425 + 0.i >> 0.00246876 + 0.i >> 0.00276749 + 0.i >> 0.00303141 + 0.i >> 0.00326647 + 0.i >> 0.00346721 + 0.i >> 0.00437335 + 0.i >> 0.0047525 + 0.i >> 0.0049999 + 0.i >> 0.0051701 + 0.i >> 0.00556462 + 0.i >> 0.00605938 + 0.i >> 0.00628264 + 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2.51964 + 0.i >> 2.51996 + 0.i >> 2.54248 + 0.i >> 2.5425 + 0.i >> 2.54795 + 0.i >> 2.54806 + 0.i >> 2.60176 + 0.i >> 2.60315 + 0.i >> 2.62963 + 0.i >> 2.62983 + 0.i >> 2.63234 + 0.i >> 2.63238 + 0.i >> 2.63751 + 0.i >> 2.66482 + 0.i >> 2.66483 + 0.i >> 2.68963 + 0.i >> 2.68966 + 0.i >> 2.71695 + 0.i >> 2.71733 + 0.i >> 2.72705 + 0.i >> 2.7271 + 0.i >> 2.72955 + 0.i >> 2.73537 + 0.i >> 2.73583 + 0.i >> 2.73595 + 0.i >> 2.78551 + 0.i >> 2.78567 + 0.i >> 2.79934 + 0.i >> 2.81368 + 0.i >> 2.82558 + 0.i >> 2.82562 + 0.i >> 2.82586 + 0.i >> 2.82586 + 0.i >> 2.82649 + 0.i >> 2.83904 + 0.i >> 2.83906 + 0.i >> 2.85523 + 0.i >> 2.85553 + 0.i >> 2.87397 + 0.i >> 2.87398 + 0.i >> 2.90074 + 0.i >> 2.90076 + 0.i >> 2.94142 + 0.i >> 2.94174 + 0.i >> 2.96105 + 0.i >> 2.96115 + 0.i >> 2.99596 + 0.i >> 2.99649 + 0.i >> 2.99656 + 0.i >> 2.99662 + 0.i >> 3.02402 + 0.i >> 3.02424 + 0.i >> 3.03894 + 0.i >> 3.03896 + 0.i >> 3.05052 + 0.i >> 3.05054 + 0.i >> 3.07641 + 0.i >> 3.07642 + 0.i >> 3.09111 + 0.i >> 3.10507 + 0.i >> 3.10509 + 0.i >> 3.11683 + 0.i >> 3.11704 + 0.i >> 3.14499 + 0.i >> 3.15685 + 0.i >> 3.15689 + 0.i >> 3.15689 + 0.i >> 3.15747 + 0.i >> 3.15777 + 0.i >> 3.20644 + 0.i >> 3.20655 + 0.i >> 3.2738 + 0.i >> 3.27616 + 0.i >> 3.29973 + 0.i >> 3.29978 + 0.i >> 3.32425 + 0.i >> 3.32745 + 0.i >> 3.33317 + 0.i >> 3.33317 + 0.i >> 3.33317 + 0.i >> 3.34044 + 0.i >> 3.34045 + 0.i >> 3.37155 + 0.i >> 3.37158 + 0.i >> 3.39934 + 0.i >> 3.39938 + 0.i >> 3.44127 + 0.i >> 3.44128 + 0.i >> 3.47332 + 0.i >> 3.47336 + 0.i >> 3.52504 + 0.i >> 3.52537 + 0.i >> 3.52593 + 0.i >> 3.52611 + 0.i >> 3.57033 + 0.i >> 3.57053 + 0.i >> 3.57644 + 0.i >> 3.5895 + 0.i >> 3.5895 + 0.i >> 3.59299 + 0.i >> 3.59346 + 0.i >> 3.59352 + 0.i >> 3.60413 + 0.i >> 3.60415 + 0.i >> 3.61629 + 0.i >> 3.6163 + 0.i >> 3.64999 + 0.i >> 3.65001 + 0.i >> 3.70438 + 0.i >> 3.7044 + 0.i >> 3.75027 + 0.i >> 3.75027 + 0.i >> 3.78498 + 0.i >> 3.78501 + 0.i >> 3.79402 + 0.i >> 3.80135 + 0.i >> 3.80244 + 0.i >> 3.80273 + 0.i >> 3.8261 + 0.i >> 3.82995 + 0.i >> 3.86128 + 0.i >> 3.86376 + 0.i >> 3.86632 + 0.i >> 3.86861 + 0.i >> 3.87662 + 0.i >> 3.88743 + 0.i >> 3.88747 + 0.i >> 3.88747 + 0.i >> 3.90168 + 0.i >> 3.90383 + 0.i >> 3.94272 + 0.i >> 4.07034 + 0.i >> 4.07073 + 0.i >> 4.07106 + 0.i >> 4.0712 + 0.i >> 4.12802 + 0.i >> 4.179 + 0.i >> 4.179 + 0.i >> 4.21785 + 0.i >> 4.21785 + 0.i >> 4.23041 + 0.i >> 4.26551 + 0.i >> 4.26984 + 0.i >> 4.26984 + 0.i >> 4.28215 + 0.i >> 4.28222 + 0.i >> 4.28253 + 0.i >> 4.28253 + 0.i >> 4.28439 + 0.i >> 4.30964 + 0.i >> 4.41513 + 0.i >> 4.42009 + 0.i >> 4.4201 + 0.i >> 4.4201 + 0.i >> 4.55339 + 0.i >> 4.55351 + 0.i >> 4.5543 + 0.i >> 4.5544 + 0.i >> 4.6759 + 0.i >> 4.69125 + 0.i >> 4.6913 + 0.i >> 4.6913 + 0.i >> 4.69141 + 0.i >> 4.69152 + 0.i >> 4.779 + 0.i >> 4.78551 + 0.i >> 4.78649 + 0.i >> 4.78681 + 0.i >> 4.96201 + 0.i >> 4.96209 + 0.i >> 4.981 + 0.i >> 4.98151 + 0.i >> 5.06651 + 0.i >> 5.19733 + 0.i >> 5.21834 + 0.i >> 5.2184 + 0.i >> 5.2184 + 0.i >> 5.2184 + 0.i >> 5.21846 + 0.i >> 5.49277 + 0.i >> 5.50119 + 0.i >> 5.50517 + 0.i >> 5.5204 + 0.i >> 5.52046 + 0.i >> 5.52046 + 0.i >> 5.52081 + 0.i >> 5.52102 + 0.i >> 5.5294 + 0.i >> 5.52954 + 0.i >> 5.5956 + 0.i >> 5.59687 + 0.i >> 5.59694 + 0.i >> 5.59766 + 0.i >> 5.6491 + 0.i >> 5.64982 + 0.i >> 5.64984 + 0.i >> 5.64987 + 0.i >> 5.8325 + 0.i >> 5.93872 + 0.i >> 5.95213 + 0.i >> 5.95213 + 0.i >> 5.95367 + 0.i >> 5.95377 + 0.i >> 5.96576 + 0.i >> 6.13806 + 0.i >> 6.13941 + 0.i >> 6.36023 + 0.i >> 6.37305 + 0.i >> 6.37312 + 0.i >> 6.37312 + 0.i >> 6.37498 + 0.i >> 6.37574 + 0.i >> 6.8939 + 0.i >> 6.92001 + 0.i >> 6.92009 + 0.i >> 6.92009 + 0.i >> 6.92009 + 0.i >> 6.92017 + 0.i >> 7.10562 + 0.i >> 7.12889 + 0.i >> 7.12897 + 0.i >> 7.12897 + 0.i >> 7.13024 + 0.i >> 7.13089 + 0.i >> 7.40688 + 0.i >> 7.46155 + 0.i >> 7.47877 + 0.i >> 7.49077 + 0.i >> 7.49077 + 0.i >> 7.49145 + 0.i >> 7.49157 + 0.i >> 7.49954 + 0.i >> 7.56572 + 0.i >> 7.56602 + 0.i >> 7.76145 + 0.i >> 7.76855 + 0.i >> 7.76864 + 0.i >> 7.76864 + 0.i >> 7.8675 + 0.i >> 7.86924 + 0.i >> 7.93069 + 0.i >> 7.93406 + 0.i >> 7.93419 + 0.i >> 8.58745 + 0.i >> 8.58793 + 0.i >> 8.65657 + 0.i >> 8.65693 + 0.i >> 8.65703 + 0.i >> 8.65703 + 0.i >> 8.76218 + 0.i >> 8.76323 + 0.i >> 8.76344 + 0.i >> 8.76345 + 0.i >> 8.76364 + 0.i >> 8.76379 + 0.i >> 8.84516 + 0.i >> 8.84531 + 0.i >> 8.84538 + 0.i >> 8.84542 + 0.i >> 8.84542 + 0.i >> 8.84542 + 0.i >> 9.96128 + 0.i >> 10.0422 + 0.i >> 10.3582 + 0.i >> 11.1981 + 0.i >> 11.5961 + 0.i >> 11.5961 + 0.i >> 11.5961 + 0.i >> 11.5962 + 0.i >> 11.5962 + 0.i >> 11.5962 + 0.i >> 11.5962 + 0.i >> 11.5963 + 0.i >> 16.048 + 0.i >> 17.1999 + 0.i >> 17.2057 + 0.i >> 18.1546 + 0.i >> 18.1548 + 0.i >> 18.1548 + 0.i >> 18.155 + 0.i >> 18.155 + 0.i >> 18.155 + 0.i >> 53.4484 + 0.i >> 285.167 + 0.i >> 285.353 + 0.i > From Sander.Arens at ugent.be Mon Nov 7 04:17:00 2016 From: Sander.Arens at ugent.be (Sander Arens) Date: Mon, 7 Nov 2016 11:17:00 +0100 Subject: [petsc-users] how to output components of a section In-Reply-To: References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> <94fd3815-37a2-d847-3571-2961681e51d9@126.com> Message-ID: Ok, I see what happened. If you create a a vector with DMGetGlobalVector, the VecView function is overloaded with some DM-specific VecView function (e.g. VecView_Plex), but this doesn't happen with the vec that you get from VecGetSubVector. So one way to solve this would be to create a global vector from your subdm and do the scatters yourself. But I think it would be better if these VecView operations could be copied from the original vec in VecGetSubVector? Thanks, Sander On 7 November 2016 at 09:08, leejearl wrote: > Hi Sander: > Thank your for your assistance, but it is still not works. The code is > now as follows: > Vec subX, X; > DM subdm; > IS subIS; > PetscInt numSubFields = 2; > PetscInt subFields[2]; > subFields[0] = 0; subFields[1] =1 ; > ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, > &subdm);CHKERRQ(ierr); > ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); > ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); > ierr = VecSetDM(subX, dm);CHKERRQ(ierr); > >> ierr = PetscObjectSetName((PetscObject) subX, >> "sol.");CHKERRQ(ierr); >> ierr = PetscViewerSetType(*viewer, PETSCVIEWERVTK);CHKERRQ(ierr); >> ierr = PetscViewerPushFormat(*viewer, >> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >> ierr = PetscViewerFileSetName(*viewer, >> "subsol.vtu");CHKERRQ(ierr); >> ierr = VecView(subX, viewer);CHKERRQ(ierr); >> ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); >> ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); >> DMDestroy(&subdm); >> ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); >> > > > I have add "VecSetDm", but it has not output file. > > Thanks > leejearl > > On 2016?11?07? 15:35, Sander Arens wrote: > > Does it work if you put > ierr = VecSetDM(subX, subdm);CHKERRQ(ierr); > before the VecView? > > Thanks, > Sander > > On 7 November 2016 at 03:50, leejearl wrote: > >> Hi, Barry: >> I must have some make some mistakes. I post the code as follows: >> Vec subX, X; >> DM subdm; >> IS subIS; >> PetscInt numSubFields = 2; >> PetscInt subFields[2]; >> subFields[0] = 0; subFields[1] =1 ; >> ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, >> &subdm);CHKERRQ(ierr); >> ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); >> ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); >> ierr = PetscObjectSetName((PetscObject) subX, >> "sol.");CHKERRQ(ierr); >> ierr = PetscViewerSetType(*viewer, PETSCVIEWERVTK);CHKERRQ(ierr); >> ierr = PetscViewerPushFormat(*viewer, >> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >> ierr = PetscViewerFileSetName(*viewer, >> "subsol.vtu");CHKERRQ(ierr); >> ierr = VecView(subX, viewer);CHKERRQ(ierr); >> ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); >> ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); >> DMDestroy(&subdm); >> ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); >> >> There are three fields in dm, and I want to obtain the vector of the two >> of them. But, I can not >> get the output file ?subsol.vtu?. Can you help me with the code? >> >> Thanks >> leejearl >> >> On 2016?11?06? 12:21, Barry Smith wrote: >> >>> On Nov 5, 2016, at 8:36 PM, leejearl wrote: >>>> >>>> Hi Sander: >>>> Thank you for your advices, and it works. But it is only available >>>> in th local vector. >>>> >>> This should work on the global vector. Please send the full output of >>> the error messages when used with a global vector. >>> >>> Barry >>> >>> Is there any methods to reach this purposes in the global vector? >>>> Thanks >>>> leejearl >>>> On 2016?11?05? 19:29, Sander Arens wrote: >>>> >>>>> You can first obtain an IS with >>>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/ >>>>> DM/DMCreateSubDM.html >>>>> and with that you can obtain a subvector with >>>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/ >>>>> Vec/VecGetSubVector.html >>>>> which you can then view the usual way. >>>>> >>>>> Thanks, >>>>> Sander >>>>> >>>>> On 5 November 2016 at 12:17, leejearl wrote: >>>>> Hi, all: >>>>> >>>>> I meet a problems which I can not overcome. The programe is like >>>>> the code in >>>>> >>>>> "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/ple >>>>> x/examples/tutorials/ex1.c.html". >>>>> >>>>> The code create a section which has three fields: u,v,w. How can I >>>>> output the fields u and v without together with w? >>>>> >>>>> Thanks! >>>>> >>>>> >>>>> leejearl >>>>> >>>>> >>>>> >>>>> >>>>> >> >> > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Nov 7 06:09:33 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 7 Nov 2016 06:09:33 -0600 Subject: [petsc-users] how to output components of a section In-Reply-To: References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> <94fd3815-37a2-d847-3571-2961681e51d9@126.com> Message-ID: On Mon, Nov 7, 2016 at 4:17 AM, Sander Arens wrote: > Ok, I see what happened. > If you create a a vector with DMGetGlobalVector, the VecView function is > overloaded with some DM-specific VecView function (e.g. VecView_Plex), but > this doesn't happen with the vec that you get from VecGetSubVector. So one > way to solve this would be to create a global vector from your subdm and do > the scatters yourself. > But I think it would be better if these VecView operations could be copied > from the original vec in VecGetSubVector? > You are right. I am moving this to petsc-dev temporarily for discussion. Thanks, Matt > Thanks, > Sander > > On 7 November 2016 at 09:08, leejearl wrote: > >> Hi Sander: >> Thank your for your assistance, but it is still not works. The code >> is now as follows: >> Vec subX, X; >> DM subdm; >> IS subIS; >> PetscInt numSubFields = 2; >> PetscInt subFields[2]; >> subFields[0] = 0; subFields[1] =1 ; >> ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, >> &subdm);CHKERRQ(ierr); >> ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); >> ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); >> ierr = VecSetDM(subX, dm);CHKERRQ(ierr); >> >>> ierr = PetscObjectSetName((PetscObject) subX, >>> "sol.");CHKERRQ(ierr); >>> ierr = PetscViewerSetType(*viewer, PETSCVIEWERVTK);CHKERRQ(ierr); >>> ierr = PetscViewerPushFormat(*viewer, >>> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >>> ierr = PetscViewerFileSetName(*viewer, >>> "subsol.vtu");CHKERRQ(ierr); >>> ierr = VecView(subX, viewer);CHKERRQ(ierr); >>> ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); >>> ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); >>> DMDestroy(&subdm); >>> ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); >>> >> >> >> I have add "VecSetDm", but it has not output file. >> >> Thanks >> leejearl >> >> On 2016?11?07? 15:35, Sander Arens wrote: >> >> Does it work if you put >> ierr = VecSetDM(subX, subdm);CHKERRQ(ierr); >> before the VecView? >> >> Thanks, >> Sander >> >> On 7 November 2016 at 03:50, leejearl wrote: >> >>> Hi, Barry: >>> I must have some make some mistakes. I post the code as follows: >>> Vec subX, X; >>> DM subdm; >>> IS subIS; >>> PetscInt numSubFields = 2; >>> PetscInt subFields[2]; >>> subFields[0] = 0; subFields[1] =1 ; >>> ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, >>> &subdm);CHKERRQ(ierr); >>> ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); >>> ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); >>> ierr = PetscObjectSetName((PetscObject) subX, >>> "sol.");CHKERRQ(ierr); >>> ierr = PetscViewerSetType(*viewer, PETSCVIEWERVTK);CHKERRQ(ierr); >>> ierr = PetscViewerPushFormat(*viewer, >>> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >>> ierr = PetscViewerFileSetName(*viewer, >>> "subsol.vtu");CHKERRQ(ierr); >>> ierr = VecView(subX, viewer);CHKERRQ(ierr); >>> ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); >>> ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); >>> DMDestroy(&subdm); >>> ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); >>> >>> There are three fields in dm, and I want to obtain the vector of the two >>> of them. But, I can not >>> get the output file ?subsol.vtu?. Can you help me with the code? >>> >>> Thanks >>> leejearl >>> >>> On 2016?11?06? 12:21, Barry Smith wrote: >>> >>>> On Nov 5, 2016, at 8:36 PM, leejearl wrote: >>>>> >>>>> Hi Sander: >>>>> Thank you for your advices, and it works. But it is only >>>>> available in th local vector. >>>>> >>>> This should work on the global vector. Please send the full output >>>> of the error messages when used with a global vector. >>>> >>>> Barry >>>> >>>> Is there any methods to reach this purposes in the global vector? >>>>> Thanks >>>>> leejearl >>>>> On 2016?11?05? 19:29, Sander Arens wrote: >>>>> >>>>>> You can first obtain an IS with >>>>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/ >>>>>> DM/DMCreateSubDM.html >>>>>> and with that you can obtain a subvector with >>>>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/ >>>>>> Vec/VecGetSubVector.html >>>>>> which you can then view the usual way. >>>>>> >>>>>> Thanks, >>>>>> Sander >>>>>> >>>>>> On 5 November 2016 at 12:17, leejearl wrote: >>>>>> Hi, all: >>>>>> >>>>>> I meet a problems which I can not overcome. The programe is like >>>>>> the code in >>>>>> >>>>>> "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/ple >>>>>> x/examples/tutorials/ex1.c.html". >>>>>> >>>>>> The code create a section which has three fields: u,v,w. How can >>>>>> I output the fields u and v without together with w? >>>>>> >>>>>> Thanks! >>>>>> >>>>>> >>>>>> leejearl >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>> >>> >> >> > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Nov 7 06:13:23 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 7 Nov 2016 06:13:23 -0600 Subject: [petsc-users] Seeking help for analyzing non-convergence (KSP) In-Reply-To: <07ce2ba2-9270-f909-0634-fe6ce023e2e6@xgm.de> References: <153764A7-94BC-433F-9610-E374982175FA@mcs.anl.gov> <07ce2ba2-9270-f909-0634-fe6ce023e2e6@xgm.de> Message-ID: On Mon, Nov 7, 2016 at 3:53 AM, Florian Lindner wrote: > Hey Barry! > > Am 04.11.2016 um 18:42 schrieb Barry Smith: > > > > Try running on one process with the SuperLU direct solver (note > superlu NOT superlu_dist). You need to ./configure PETSc with > --download-superlu then run your code with -pc_type lu > -pc_factor_mat_solver_package superlu > > I am having some problems making superlu work, when configuring with > --download-superlu. > > Firstly, I was getting "libsuperlu.so.5: cannot open shared object file: > No such file or directory" errors. > They vanished after adding petsc/arch-linux2-c-debug/lib to > LD_LIBRARY_PATH. > > But my application (C and python) still do not find the solver: > > Traceback (most recent call last): > File "RBF_Load.py", line 46, in > main() > File "RBF_Load.py", line 38, in main > solver.solve(b, x) > File "PETSc/KSP.pyx", line 384, in petsc4py.PETSc.KSP.solve > (src/petsc4py.PETSc.c:154741) > petsc4py.PETSc.Error: error code 92 > [0] KSPSolve() line 600 in /data/scratch/lindnefn/ > software/petsc/src/ksp/ksp/interface/itfunc.c > [0] KSPSetUpOnBlocks() line 220 in /data/scratch/lindnefn/ > software/petsc/src/ksp/ksp/interface/itfunc.c > [0] PCSetUpOnBlocks() line 1001 in /data/scratch/lindnefn/ > software/petsc/src/ksp/pc/interface/precon.c > [0] PCSetUpOnBlocks_ASM() line 428 in /data/scratch/lindnefn/ > software/petsc/src/ksp/pc/impls/asm/asm.c > [0] KSPSetUp() line 390 in /data/scratch/lindnefn/ > software/petsc/src/ksp/ksp/interface/itfunc.c > [0] PCSetUp() line 968 in /data/scratch/lindnefn/ > software/petsc/src/ksp/pc/interface/precon.c > [0] PCSetUp_LU() line 134 in /data/scratch/lindnefn/ > software/petsc/src/ksp/pc/impls/factor/lu/lu.c > [0] MatGetFactor() line 4244 in /data/scratch/lindnefn/ > software/petsc/src/mat/interface/matrix.c > [0] See http://www.mcs.anl.gov/petsc/documentation/linearsolvertable.html > for possible LU and Cholesky solvers > [0] Could not locate a solver package. Perhaps you must ./configure with > --download- > It sounds like you have more than one PETSC_ARCH, or more than one PETSC_DIR, and they are getting mixed up. You can see what module gets loaded for petsc4py, and then run ldd on it to see what PETSc libraries it links. Matt > I configured with > > python2 configure --with-debugging=1 --download-petsc4py --download-mpi4py > --download-superlu > > on a recent checkout of the maint branch. > > make PETSC_DIR=/data/scratch/lindnefn/software/petsc > PETSC_ARCH=arch-linux2-c-debug test reported no errors. > > Best Thanks, > Florian > > > > > Barry > > > >> On Nov 4, 2016, at 10:44 AM, Florian Lindner > wrote: > >> > >> Hello, > >> > >> I have a matrix C that is the result of an RBF interpolation. > >> > >> It is constructured like that: > >> > >> c_ij = phi( |x_i - x_j| ) > >> > >> x are supporting points. phi is the radial basis functions, here it is > a Gaussian: phi(r) = exp( -(1.5*r)^2 ). > >> > >> The system is augmented by a global polynomial, which results in the > first 3 rows being dense. > >> > >> The matrix is symmetric and of size 2309. It is also sparse since the > basis functions are decaying very rapidly. A > >> picture of the sparsity pattern I have uploaded at [1] > >> > >> I am having big trouble solving the system. > >> > >> Using default settings on 10 procs I'm not achieving convergence after > 40k iterations: > >> > >> 40000 KSP preconditioned resid norm 2.525546749843e+01 true resid norm > 5.470906445602e+01 ||r(i)||/||b|| 3.122197420093e-02 > >> > >> I have uploaded a small python script using petsc4py that simply loads > the matrix and the rhs and tries to solve it. It > >> is bundled with the matrix and rhs and available at [2] (650 KB). Some > paths in the Python source need to be adapted. > >> > >> The condition number using -pc_type svd -pc_svd_monitor did not work, > due to incompatible matrix formats. > >> > >> The condition number estimate using -pc_type none -ksp_type gmres > -ksp_monitor_singular_value -ksp_gmres_restart 1000 > >> has been running for over half an hour now, its current line is: > >> > >> 5655 KSP preconditioned resid norm 9.481821216790e-02 true resid norm > 9.481821212512e-02 ||r(i)||/||b|| 5.411190635748e-05 > >> 5655 KSP Residual norm 9.481821216790e-02 % max 2.853532248325e+02 min > 1.073886912921e-06 max/min 2.657199947212e+08 > >> > >> The Eigenvalues, computed with -ksp_compute_eigenvalues > -ksp_gmres_restart 1000 -pc_type none did not converge after 40k > >> iterations, bit they eigenvalues were printed. They are all real, none > is zero, but some are pretty close. I've pasted > >> them at the end of the mail. > >> > >> I tried a bunch of different PCs, but I'm somehow helpless on how to > analyse that problem more systematically. > >> > >> I know that RBF interpolation tends to produce badly conditioned > matrices, but this seems to be (almost) singular. I > >> have scrutinized my algorithms and in most cases it works just fine, > converges and the output results are sane. > >> > >> I am grateful for any help! > >> > >> Best, > >> Florian > >> > >> > >> [1] http://xgm.de/upload/sparsity.png > >> [2] http://xgm.de/upload/RBF.tar.bz2 > >> > >> Eigenvalues: > >> > >> Iteratively computed eigenvalues > >> -276.515 + 0.i > >> -276.348 + 0.i > >> -43.5577 + 0.i > >> 3.27753e-09 + 0.i > >> 5.09352e-06 + 0.i > >> 1.56431e-05 + 0.i > >> 2.79046e-05 + 0.i > >> 0.000145571 + 0.i > >> 0.000184333 + 0.i > >> 0.000283665 + 0.i > >> 0.000395128 + 0.i > >> 0.000488579 + 0.i > >> 0.000568982 + 0.i > >> 0.000704054 + 0.i > >> 0.000864538 + 0.i > >> 0.00101309 + 0.i > >> 0.00119913 + 0.i > >> 0.00142954 + 0.i > >> 0.00156907 + 0.i > >> 0.00178931 + 0.i > >> 0.00200295 + 0.i > >> 0.00223425 + 0.i > >> 0.00246876 + 0.i > >> 0.00276749 + 0.i > >> 0.00303141 + 0.i > >> 0.00326647 + 0.i > >> 0.00346721 + 0.i > >> 0.00437335 + 0.i > >> 0.0047525 + 0.i > >> 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+ 0.i > >> 1.66348 + 0.i > >> 1.67861 + 0.i > >> 1.68121 + 0.i > >> 1.68151 + 0.i > >> 1.70128 + 0.i > >> 1.70146 + 0.i > >> 1.71076 + 0.i > >> 1.71132 + 0.i > >> 1.71362 + 0.i > >> 1.71366 + 0.i > >> 1.73403 + 0.i > >> 1.73465 + 0.i > >> 1.73479 + 0.i > >> 1.74324 + 0.i > >> 1.74327 + 0.i > >> 1.74354 + 0.i > >> 1.74354 + 0.i > >> 1.74419 + 0.i > >> 1.7508 + 0.i > >> 1.75082 + 0.i > >> 1.76674 + 0.i > >> 1.76702 + 0.i > >> 1.78801 + 0.i > >> 1.78817 + 0.i > >> 1.80169 + 0.i > >> 1.80507 + 0.i > >> 1.80564 + 0.i > >> 1.80578 + 0.i > >> 1.81023 + 0.i > >> 1.81038 + 0.i > >> 1.83173 + 0.i > >> 1.83187 + 0.i > >> 1.83281 + 0.i > >> 1.83288 + 0.i > >> 1.84212 + 0.i > >> 1.84215 + 0.i > >> 1.85367 + 0.i > >> 1.8537 + 0.i > >> 1.87126 + 0.i > >> 1.87299 + 0.i > >> 1.87655 + 0.i > >> 1.87656 + 0.i > >> 1.89401 + 0.i > >> 1.89404 + 0.i > >> 1.93557 + 0.i > >> 1.93584 + 0.i > >> 1.93787 + 0.i > >> 1.9379 + 0.i > >> 1.95212 + 0.i > >> 1.96311 + 0.i > >> 1.97136 + 0.i > >> 1.97138 + 0.i > >> 1.97138 + 0.i > >> 1.97192 + 0.i > >> 1.97218 + 0.i > >> 1.98881 + 0.i > >> 1.98909 + 0.i > >> 2.00743 + 0.i > >> 2.00744 + 0.i > >> 2.01614 + 0.i > >> 2.01641 + 0.i > >> 2.01714 + 0.i > >> 2.01731 + 0.i > >> 2.04198 + 0.i > >> 2.04202 + 0.i > >> 2.04887 + 0.i > >> 2.04913 + 0.i > >> 2.05054 + 0.i > >> 2.05063 + 0.i > >> 2.06708 + 0.i > >> 2.06709 + 0.i > >> 2.08633 + 0.i > >> 2.08636 + 0.i > >> 2.08982 + 0.i > >> 2.09 + 0.i > >> 2.104 + 0.i > >> 2.10422 + 0.i > >> 2.15289 + 0.i > >> 2.15334 + 0.i > >> 2.16771 + 0.i > >> 2.16774 + 0.i > >> 2.23282 + 0.i > >> 2.233 + 0.i > >> 2.23696 + 0.i > >> 2.237 + 0.i > >> 2.2372 + 0.i > >> 2.2615 + 0.i > >> 2.26457 + 0.i > >> 2.2646 + 0.i > >> 2.26937 + 0.i > >> 2.26981 + 0.i > >> 2.27639 + 0.i > >> 2.27642 + 0.i > >> 2.27643 + 0.i > >> 2.27643 + 0.i > >> 2.27649 + 0.i > >> 2.27795 + 0.i > >> 2.27799 + 0.i > >> 2.28052 + 0.i > >> 2.28057 + 0.i > >> 2.28567 + 0.i > >> 2.28568 + 0.i > >> 2.29304 + 0.i > >> 2.29558 + 0.i > >> 2.29618 + 0.i > >> 2.29631 + 0.i > >> 2.33763 + 0.i > >> 2.33788 + 0.i > >> 2.36223 + 0.i > >> 2.36224 + 0.i > >> 2.4134 + 0.i > >> 2.41361 + 0.i > >> 2.42906 + 0.i > >> 2.42923 + 0.i > >> 2.4563 + 0.i > >> 2.45677 + 0.i > >> 2.48269 + 0.i > >> 2.48306 + 0.i > >> 2.48393 + 0.i > >> 2.48416 + 0.i > >> 2.48829 + 0.i > >> 2.48835 + 0.i > >> 2.50243 + 0.i > >> 2.50255 + 0.i > >> 2.50619 + 0.i > >> 2.51896 + 0.i > >> 2.51899 + 0.i > >> 2.51899 + 0.i > >> 2.51902 + 0.i > >> 2.51902 + 0.i > >> 2.51964 + 0.i > >> 2.51996 + 0.i > >> 2.54248 + 0.i > >> 2.5425 + 0.i > >> 2.54795 + 0.i > >> 2.54806 + 0.i > >> 2.60176 + 0.i > >> 2.60315 + 0.i > >> 2.62963 + 0.i > >> 2.62983 + 0.i > >> 2.63234 + 0.i > >> 2.63238 + 0.i > >> 2.63751 + 0.i > >> 2.66482 + 0.i > >> 2.66483 + 0.i > >> 2.68963 + 0.i > >> 2.68966 + 0.i > >> 2.71695 + 0.i > >> 2.71733 + 0.i > >> 2.72705 + 0.i > >> 2.7271 + 0.i > >> 2.72955 + 0.i > >> 2.73537 + 0.i > >> 2.73583 + 0.i > >> 2.73595 + 0.i > >> 2.78551 + 0.i > >> 2.78567 + 0.i > >> 2.79934 + 0.i > >> 2.81368 + 0.i > >> 2.82558 + 0.i > >> 2.82562 + 0.i > >> 2.82586 + 0.i > >> 2.82586 + 0.i > >> 2.82649 + 0.i > >> 2.83904 + 0.i > >> 2.83906 + 0.i > >> 2.85523 + 0.i > >> 2.85553 + 0.i > >> 2.87397 + 0.i > >> 2.87398 + 0.i > >> 2.90074 + 0.i > >> 2.90076 + 0.i > >> 2.94142 + 0.i > >> 2.94174 + 0.i > >> 2.96105 + 0.i > >> 2.96115 + 0.i > >> 2.99596 + 0.i > >> 2.99649 + 0.i > >> 2.99656 + 0.i > >> 2.99662 + 0.i > >> 3.02402 + 0.i > >> 3.02424 + 0.i > >> 3.03894 + 0.i > >> 3.03896 + 0.i > >> 3.05052 + 0.i > >> 3.05054 + 0.i > >> 3.07641 + 0.i > >> 3.07642 + 0.i > >> 3.09111 + 0.i > >> 3.10507 + 0.i > >> 3.10509 + 0.i > >> 3.11683 + 0.i > >> 3.11704 + 0.i > >> 3.14499 + 0.i > >> 3.15685 + 0.i > >> 3.15689 + 0.i > >> 3.15689 + 0.i > >> 3.15747 + 0.i > >> 3.15777 + 0.i > >> 3.20644 + 0.i > >> 3.20655 + 0.i > >> 3.2738 + 0.i > >> 3.27616 + 0.i > >> 3.29973 + 0.i > >> 3.29978 + 0.i > >> 3.32425 + 0.i > >> 3.32745 + 0.i > >> 3.33317 + 0.i > >> 3.33317 + 0.i > >> 3.33317 + 0.i > >> 3.34044 + 0.i > >> 3.34045 + 0.i > >> 3.37155 + 0.i > >> 3.37158 + 0.i > >> 3.39934 + 0.i > >> 3.39938 + 0.i > >> 3.44127 + 0.i > >> 3.44128 + 0.i > >> 3.47332 + 0.i > >> 3.47336 + 0.i > >> 3.52504 + 0.i > >> 3.52537 + 0.i > >> 3.52593 + 0.i > >> 3.52611 + 0.i > >> 3.57033 + 0.i > >> 3.57053 + 0.i > >> 3.57644 + 0.i > >> 3.5895 + 0.i > >> 3.5895 + 0.i > >> 3.59299 + 0.i > >> 3.59346 + 0.i > >> 3.59352 + 0.i > >> 3.60413 + 0.i > >> 3.60415 + 0.i > >> 3.61629 + 0.i > >> 3.6163 + 0.i > >> 3.64999 + 0.i > >> 3.65001 + 0.i > >> 3.70438 + 0.i > >> 3.7044 + 0.i > >> 3.75027 + 0.i > >> 3.75027 + 0.i > >> 3.78498 + 0.i > >> 3.78501 + 0.i > >> 3.79402 + 0.i > >> 3.80135 + 0.i > >> 3.80244 + 0.i > >> 3.80273 + 0.i > >> 3.8261 + 0.i > >> 3.82995 + 0.i > >> 3.86128 + 0.i > >> 3.86376 + 0.i > >> 3.86632 + 0.i > >> 3.86861 + 0.i > >> 3.87662 + 0.i > >> 3.88743 + 0.i > >> 3.88747 + 0.i > >> 3.88747 + 0.i > >> 3.90168 + 0.i > >> 3.90383 + 0.i > >> 3.94272 + 0.i > >> 4.07034 + 0.i > >> 4.07073 + 0.i > >> 4.07106 + 0.i > >> 4.0712 + 0.i > >> 4.12802 + 0.i > >> 4.179 + 0.i > >> 4.179 + 0.i > >> 4.21785 + 0.i > >> 4.21785 + 0.i > >> 4.23041 + 0.i > >> 4.26551 + 0.i > >> 4.26984 + 0.i > >> 4.26984 + 0.i > >> 4.28215 + 0.i > >> 4.28222 + 0.i > >> 4.28253 + 0.i > >> 4.28253 + 0.i > >> 4.28439 + 0.i > >> 4.30964 + 0.i > >> 4.41513 + 0.i > >> 4.42009 + 0.i > >> 4.4201 + 0.i > >> 4.4201 + 0.i > >> 4.55339 + 0.i > >> 4.55351 + 0.i > >> 4.5543 + 0.i > >> 4.5544 + 0.i > >> 4.6759 + 0.i > >> 4.69125 + 0.i > >> 4.6913 + 0.i > >> 4.6913 + 0.i > >> 4.69141 + 0.i > >> 4.69152 + 0.i > >> 4.779 + 0.i > >> 4.78551 + 0.i > >> 4.78649 + 0.i > >> 4.78681 + 0.i > >> 4.96201 + 0.i > >> 4.96209 + 0.i > >> 4.981 + 0.i > >> 4.98151 + 0.i > >> 5.06651 + 0.i > >> 5.19733 + 0.i > >> 5.21834 + 0.i > >> 5.2184 + 0.i > >> 5.2184 + 0.i > >> 5.2184 + 0.i > >> 5.21846 + 0.i > >> 5.49277 + 0.i > >> 5.50119 + 0.i > >> 5.50517 + 0.i > >> 5.5204 + 0.i > >> 5.52046 + 0.i > >> 5.52046 + 0.i > >> 5.52081 + 0.i > >> 5.52102 + 0.i > >> 5.5294 + 0.i > >> 5.52954 + 0.i > >> 5.5956 + 0.i > >> 5.59687 + 0.i > >> 5.59694 + 0.i > >> 5.59766 + 0.i > >> 5.6491 + 0.i > >> 5.64982 + 0.i > >> 5.64984 + 0.i > >> 5.64987 + 0.i > >> 5.8325 + 0.i > >> 5.93872 + 0.i > >> 5.95213 + 0.i > >> 5.95213 + 0.i > >> 5.95367 + 0.i > >> 5.95377 + 0.i > >> 5.96576 + 0.i > >> 6.13806 + 0.i > >> 6.13941 + 0.i > >> 6.36023 + 0.i > >> 6.37305 + 0.i > >> 6.37312 + 0.i > >> 6.37312 + 0.i > >> 6.37498 + 0.i > >> 6.37574 + 0.i > >> 6.8939 + 0.i > >> 6.92001 + 0.i > >> 6.92009 + 0.i > >> 6.92009 + 0.i > >> 6.92009 + 0.i > >> 6.92017 + 0.i > >> 7.10562 + 0.i > >> 7.12889 + 0.i > >> 7.12897 + 0.i > >> 7.12897 + 0.i > >> 7.13024 + 0.i > >> 7.13089 + 0.i > >> 7.40688 + 0.i > >> 7.46155 + 0.i > >> 7.47877 + 0.i > >> 7.49077 + 0.i > >> 7.49077 + 0.i > >> 7.49145 + 0.i > >> 7.49157 + 0.i > >> 7.49954 + 0.i > >> 7.56572 + 0.i > >> 7.56602 + 0.i > >> 7.76145 + 0.i > >> 7.76855 + 0.i > >> 7.76864 + 0.i > >> 7.76864 + 0.i > >> 7.8675 + 0.i > >> 7.86924 + 0.i > >> 7.93069 + 0.i > >> 7.93406 + 0.i > >> 7.93419 + 0.i > >> 8.58745 + 0.i > >> 8.58793 + 0.i > >> 8.65657 + 0.i > >> 8.65693 + 0.i > >> 8.65703 + 0.i > >> 8.65703 + 0.i > >> 8.76218 + 0.i > >> 8.76323 + 0.i > >> 8.76344 + 0.i > >> 8.76345 + 0.i > >> 8.76364 + 0.i > >> 8.76379 + 0.i > >> 8.84516 + 0.i > >> 8.84531 + 0.i > >> 8.84538 + 0.i > >> 8.84542 + 0.i > >> 8.84542 + 0.i > >> 8.84542 + 0.i > >> 9.96128 + 0.i > >> 10.0422 + 0.i > >> 10.3582 + 0.i > >> 11.1981 + 0.i > >> 11.5961 + 0.i > >> 11.5961 + 0.i > >> 11.5961 + 0.i > >> 11.5962 + 0.i > >> 11.5962 + 0.i > >> 11.5962 + 0.i > >> 11.5962 + 0.i > >> 11.5963 + 0.i > >> 16.048 + 0.i > >> 17.1999 + 0.i > >> 17.2057 + 0.i > >> 18.1546 + 0.i > >> 18.1548 + 0.i > >> 18.1548 + 0.i > >> 18.155 + 0.i > >> 18.155 + 0.i > >> 18.155 + 0.i > >> 53.4484 + 0.i > >> 285.167 + 0.i > >> 285.353 + 0.i > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From popov at uni-mainz.de Mon Nov 7 10:52:22 2016 From: popov at uni-mainz.de (Anton Popov) Date: Mon, 7 Nov 2016 17:52:22 +0100 Subject: [petsc-users] SuperLU_dist issue in 3.7.4 In-Reply-To: References: <33127b2c-a0b4-bda0-bfa7-c7ebeed6b0ba@uni-mainz.de> <6B14246C-CA55-4E5B-BF5C-F01C33DACCB8@mcs.anl.gov> <94801705-937C-4D8D-BDCE-3E1AEAA4BCB4@mcs.anl.gov> <953ef0f8-b2bf-c152-9a6a-9927f0f47a24@uni-mainz.de> <4292667a-fda6-dafd-c8f6-44e8130f042a@uni-mainz.de> Message-ID: On 10/27/2016 04:51 PM, Hong wrote: > Sherry, > Thanks for detailed explanation. > We use options.Fact = DOFACT as default for the first factorization. > When user reuses matrix factor, then we must provide a default, > either 'options.Fact = SamePattern' or 'SamePattern_SameRowPerm'. > We previously set 'SamePattern_SameRowPerm'. After a user reported > error, we switched to 'SamePattern' which causes problem for 2nd user. Hong, Setting Options.Fact = DOFACT for all factorizations is currently impossible via PETSc interface. The user is expected to choose some kind of reuse model. If you could add it, I (and other users probably too) would really appreciate that. Thanks a lot, Anton > > I'll check our interface to see if we can add flag-checking for Pr and > Pc, then set default accordingly. > > Hong > > On Wed, Oct 26, 2016 at 3:23 PM, Xiaoye S. Li > wrote: > > Some graph preprocessing steps can be skipped ONLY IF a previous > factorization was done, and the information can be reused (AS > INPUT) to the new factorization. > > In general, the driver routine SRC/pdgssvx.c() performs the LU > factorization of the following (preprocessed) matrix: > Pc*Pr*diag(R)*A*diag(C)*Pc^T = L*U > > The default is to do LU from scratch, including all the steps to > compute equilibration (R, C), pivot ordering (Pr), and sparsity > ordering (Pc). > > -- The default should be set as options.Fact = DOFACT. > > -- When you set options.Fact = SamePattern, the sparsity ordering > step is skipped, but you need to input Pc which was obtained from > a previous factorization. > > -- When you set options.Fact = SamePattern_SameRowPerm, both > sparsity reordering and pivoting ordering steps are skipped, but > you need to input both Pr and Pc. > > Please see Lines 258 - 307 comments in SRC/pdgssvx.c for details, > regarding which data structures should be inputs and which are > outputs. The Users Guide also explains this. > > In EXAMPLE/ directory, I have various examples of these usage > situations, see EXAMPLE/README. > > I am a little puzzled why in PETSc, the default is set to > SamePattern ?? > > Sherry > > > On Tue, Oct 25, 2016 at 9:18 AM, Hong > wrote: > > Sherry, > > We set '-mat_superlu_dist_fact SamePattern' as default in > petsc/superlu_dist on 12/6/15 (see attached email below). > > However, Anton must set 'SamePattern_SameRowPerm' to avoid > crash in his code. Checking > http://crd-legacy.lbl.gov/~xiaoye/SuperLU/superlu_dist_code_html/pzgssvx___a_bglobal_8c.html > > I see detailed description on using SamePattern_SameRowPerm, > which requires more from user than SamePattern. I guess these > flags are used for efficiency. The library sets a default, > then have users to switch for their own applications. The > default setting should not cause crash. If crash occurs, give > a meaningful error message would be help. > > Do you have suggestion how should we set default in petsc for > this flag? > > Hong > > ------------------- > > > Hong > > > > 12/7/15 > > > to Danyang, petsc-maint, PETSc, Xiaoye > > Danyang : > > Adding '-mat_superlu_dist_fact SamePattern' fixed the problem. > Below is how I figured it out. > > 1. Reading ex52f.F, I see '-superlu_default' = > '-pc_factor_mat_solver_package superlu_dist', the later > enables runtime options for other packages. I use > superlu_dist-4.2 and superlu-4.1 for the tests below. > ... > 5. > Using a_flow_check_1.bin, I am able to reproduce the error you > reported: all packages give correct results except superlu_dist: > ./ex52f -f0 matrix_and_rhs_bin/a_flow_check_1.bin -rhs > matrix_and_rhs_bin/b_flow_check_168.bin -loop_matrices > flow_check -loop_folder matrix_and_rhs_bin -pc_type lu > -pc_factor_mat_solver_package superlu_dist > Norm of error 2.5970E-12 iterations 1 > -->Test for matrix 168 > Norm of error 1.3936E-01 iterations 34 > -->Test for matrix 169 > > I guess the error might come from reuse of matrix factor. > Replacing default > -mat_superlu_dist_fact with > -mat_superlu_dist_fact SamePattern, I get > > ./ex52f -f0 matrix_and_rhs_bin/a_flow_check_1.bin -rhs > matrix_and_rhs_bin/b_flow_check_168.bin -loop_matrices > flow_check -loop_folder matrix_and_rhs_bin -pc_type lu > -pc_factor_mat_solver_package superlu_dist > -mat_superlu_dist_fact SamePattern > > Norm of error 2.5970E-12 iterations 1 > -->Test for matrix 168 > ... > Sherry may tell you why SamePattern_SameRowPerm cause the > difference here. > Best on the above experiments, I would set following as default > '-mat_superlu_diagpivotthresh 0.0' in petsc/superlu interface. > '-mat_superlu_dist_fact SamePattern' in petsc/superlu_dist > interface. > > Hong > > On Tue, Oct 25, 2016 at 10:38 AM, Hong > wrote: > > Anton, > I guess, when you reuse matrix and its symbolic factor > with updated numerical values, superlu_dist requires this > option. I'm cc'ing Sherry to confirm it. > > I'll check petsc/superlu-dist interface to set this flag > for this case. > > Hong > > > On Tue, Oct 25, 2016 at 8:20 AM, Anton Popov > > wrote: > > Hong, > > I get all the problems gone and valgrind-clean output > if I specify this: > > -mat_superlu_dist_fact SamePattern_SameRowPerm > > What does SamePattern_SameRowPerm actually mean? > Row permutations are for large diagonal, column > permutations are for sparsity, right? > Will it skip subsequent matrix permutations for large > diagonal even if matrix values change significantly? > > Surprisingly everything works even with: > > -mat_superlu_dist_colperm PARMETIS > -mat_superlu_dist_parsymbfact TRUE > > Thanks, > Anton > > On 10/24/2016 09:06 PM, Hong wrote: >> Anton: >> >>> If replacing superlu_dist with mumps, does your >>> code work? >> yes >> >> You may use mumps in your code, or tests different >> options for superlu_dist: >> >> -mat_superlu_dist_equil: Equilibrate matrix (None) >> -mat_superlu_dist_rowperm Row permutation >> (choose one of) LargeDiag NATURAL (None) >> -mat_superlu_dist_colperm Column >> permutation (choose one of) NATURAL MMD_AT_PLUS_A >> MMD_ATA METIS_AT_PLUS_A PARMETIS (None) >> -mat_superlu_dist_replacetinypivot: Replace >> tiny pivots (None) >> -mat_superlu_dist_parsymbfact: Parallel >> symbolic factorization (None) >> -mat_superlu_dist_fact Sparsity pattern >> for repeated matrix factorization (choose one of) >> SamePattern SamePattern_SameRowPerm (None) >> >> The options inside <> are defaults. You may try >> others. This might help narrow down the bug. >> >> Hong >> >> >>> Hong >>> >>> On 10/24/2016 05:47 PM, Hong wrote: >>>> Barry, >>>> Your change indeed fixed the error of his >>>> testing code. >>>> As Satish tested, on your branch, ex16 runs >>>> smooth. >>>> >>>> I do not understand why on maint or master >>>> branch, ex16 creases inside superlu_dist, >>>> but not with mumps. >>>> >>> >>> I also confirm that ex16 runs fine with >>> latest fix, but unfortunately not my code. >>> >>> This is something to be expected, since my >>> code preallocates once in the beginning. So >>> there is no way it can be affected by >>> multiple preallocations. Subsequently I only >>> do matrix assembly, that makes sure >>> structure doesn't change (set to get error >>> otherwise). >>> >>> Summary: we don't have a simple test code to >>> debug superlu issue anymore. >>> >>> Anton >>> >>>> Hong >>>> >>>> On Mon, Oct 24, 2016 at 9:34 AM, Satish >>>> Balay >>> > wrote: >>>> >>>> On Mon, 24 Oct 2016, Barry Smith wrote: >>>> >>>> > >>>> > > [Or perhaps Hong is using a >>>> different test code and is observing bugs >>>> > > with superlu_dist interface..] >>>> > >>>> > She states that her test does a >>>> NEW MatCreate() for each matrix load (I >>>> cut and pasted it in the email I just >>>> sent). The bug I fixed was only related >>>> to using the SAME matrix from one >>>> MatLoad() in another MatLoad(). >>>> >>>> Ah - ok.. Sorry - wasn't thinking >>>> clearly :( >>>> >>>> Satish >>>> >>>> >>> >>> >> >> > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From hzhang at mcs.anl.gov Mon Nov 7 11:18:52 2016 From: hzhang at mcs.anl.gov (Hong) Date: Mon, 7 Nov 2016 11:18:52 -0600 Subject: [petsc-users] SuperLU_dist issue in 3.7.4 In-Reply-To: References: <33127b2c-a0b4-bda0-bfa7-c7ebeed6b0ba@uni-mainz.de> <6B14246C-CA55-4E5B-BF5C-F01C33DACCB8@mcs.anl.gov> <94801705-937C-4D8D-BDCE-3E1AEAA4BCB4@mcs.anl.gov> <953ef0f8-b2bf-c152-9a6a-9927f0f47a24@uni-mainz.de> <4292667a-fda6-dafd-c8f6-44e8130f042a@uni-mainz.de> Message-ID: Anton: I am planning to work on this as soon as I get time. I assume that your code is working with the option '-mat_superlu_dist_fact SamePattern_SameRowPerm'. If not, let me know. What I'm planing to do is to detect the existence of Pc and Pr in petsc interface, then set reuse option, so users will not be bothered by it. > > Setting Options.Fact = DOFACT for all factorizations is currently > impossible via PETSc interface. > This might be a bug in our side. I'll check it. > The user is expected to choose some kind of reuse model. > If you could add it, I (and other users probably too) would really > appreciate that. > I'll try to get it done soon, will let you know. Thanks for your patience. Hong > > > > I'll check our interface to see if we can add flag-checking for Pr and Pc, > then set default accordingly. > > Hong > > On Wed, Oct 26, 2016 at 3:23 PM, Xiaoye S. Li wrote: > >> Some graph preprocessing steps can be skipped ONLY IF a previous >> factorization was done, and the information can be reused (AS INPUT) to the >> new factorization. >> >> In general, the driver routine SRC/pdgssvx.c() performs the LU >> factorization of the following (preprocessed) matrix: >> Pc*Pr*diag(R)*A*diag(C)*Pc^T = L*U >> >> The default is to do LU from scratch, including all the steps to compute >> equilibration (R, C), pivot ordering (Pr), and sparsity ordering (Pc). >> >> -- The default should be set as options.Fact = DOFACT. >> >> -- When you set options.Fact = SamePattern, the sparsity ordering step is >> skipped, but you need to input Pc which was obtained from a previous >> factorization. >> >> -- When you set options.Fact = SamePattern_SameRowPerm, both sparsity >> reordering and pivoting ordering steps are skipped, but you need to input >> both Pr and Pc. >> >> Please see Lines 258 - 307 comments in SRC/pdgssvx.c for details, >> regarding which data structures should be inputs and which are outputs. >> The Users Guide also explains this. >> >> In EXAMPLE/ directory, I have various examples of these usage situations, >> see EXAMPLE/README. >> >> I am a little puzzled why in PETSc, the default is set to SamePattern ?? >> >> Sherry >> >> >> On Tue, Oct 25, 2016 at 9:18 AM, Hong wrote: >> >>> Sherry, >>> >>> We set '-mat_superlu_dist_fact SamePattern' as default in >>> petsc/superlu_dist on 12/6/15 (see attached email below). >>> >>> However, Anton must set 'SamePattern_SameRowPerm' to avoid crash in his >>> code. Checking >>> http://crd-legacy.lbl.gov/~xiaoye/SuperLU/superlu_dist_code_ >>> html/pzgssvx___a_bglobal_8c.html >>> I see detailed description on using SamePattern_SameRowPerm, which >>> requires more from user than SamePattern. I guess these flags are used >>> for efficiency. The library sets a default, then have users to switch for >>> their own applications. The default setting should not cause crash. If >>> crash occurs, give a meaningful error message would be help. >>> >>> Do you have suggestion how should we set default in petsc for this flag? >>> >>> Hong >>> >>> ------------------- >>> Hong >>> 12/7/15 >>> >>> to Danyang, petsc-maint, PETSc, Xiaoye >>> Danyang : >>> >>> Adding '-mat_superlu_dist_fact SamePattern' fixed the problem. Below is >>> how I figured it out. >>> >>> 1. Reading ex52f.F, I see '-superlu_default' = >>> '-pc_factor_mat_solver_package superlu_dist', the later enables runtime >>> options for other packages. I use superlu_dist-4.2 and superlu-4.1 for the >>> tests below. >>> ... >>> 5. >>> Using a_flow_check_1.bin, I am able to reproduce the error you reported: >>> all packages give correct results except superlu_dist: >>> ./ex52f -f0 matrix_and_rhs_bin/a_flow_check_1.bin -rhs >>> matrix_and_rhs_bin/b_flow_check_168.bin -loop_matrices flow_check >>> -loop_folder matrix_and_rhs_bin -pc_type lu -pc_factor_mat_solver_package >>> superlu_dist >>> Norm of error 2.5970E-12 iterations 1 >>> -->Test for matrix 168 >>> Norm of error 1.3936E-01 iterations 34 >>> -->Test for matrix 169 >>> >>> I guess the error might come from reuse of matrix factor. Replacing >>> default >>> -mat_superlu_dist_fact with >>> -mat_superlu_dist_fact SamePattern, I get >>> >>> ./ex52f -f0 matrix_and_rhs_bin/a_flow_check_1.bin -rhs >>> matrix_and_rhs_bin/b_flow_check_168.bin -loop_matrices flow_check >>> -loop_folder matrix_and_rhs_bin -pc_type lu -pc_factor_mat_solver_package >>> superlu_dist -mat_superlu_dist_fact SamePattern >>> >>> Norm of error 2.5970E-12 iterations 1 >>> -->Test for matrix 168 >>> ... >>> Sherry may tell you why SamePattern_SameRowPerm cause the difference >>> here. >>> Best on the above experiments, I would set following as default >>> '-mat_superlu_diagpivotthresh 0.0' in petsc/superlu interface. >>> '-mat_superlu_dist_fact SamePattern' in petsc/superlu_dist interface. >>> >>> Hong >>> >>> On Tue, Oct 25, 2016 at 10:38 AM, Hong wrote: >>> >>>> Anton, >>>> I guess, when you reuse matrix and its symbolic factor with updated >>>> numerical values, superlu_dist requires this option. I'm cc'ing Sherry to >>>> confirm it. >>>> >>>> I'll check petsc/superlu-dist interface to set this flag for this case. >>>> >>>> Hong >>>> >>>> >>>> On Tue, Oct 25, 2016 at 8:20 AM, Anton Popov >>>> wrote: >>>> >>>>> Hong, >>>>> >>>>> I get all the problems gone and valgrind-clean output if I specify >>>>> this: >>>>> >>>>> -mat_superlu_dist_fact SamePattern_SameRowPerm >>>>> What does SamePattern_SameRowPerm actually mean? >>>>> Row permutations are for large diagonal, column permutations are for >>>>> sparsity, right? >>>>> Will it skip subsequent matrix permutations for large diagonal even if >>>>> matrix values change significantly? >>>>> >>>>> Surprisingly everything works even with: >>>>> >>>>> -mat_superlu_dist_colperm PARMETIS >>>>> -mat_superlu_dist_parsymbfact TRUE >>>>> >>>>> Thanks, >>>>> Anton >>>>> >>>>> On 10/24/2016 09:06 PM, Hong wrote: >>>>> >>>>> Anton: >>>>>> >>>>>> If replacing superlu_dist with mumps, does your code work? >>>>>> >>>>>> yes >>>>>> >>>>> >>>>> You may use mumps in your code, or tests different options for >>>>> superlu_dist: >>>>> >>>>> -mat_superlu_dist_equil: Equilibrate matrix (None) >>>>> -mat_superlu_dist_rowperm Row permutation (choose one >>>>> of) LargeDiag NATURAL (None) >>>>> -mat_superlu_dist_colperm Column permutation >>>>> (choose one of) NATURAL MMD_AT_PLUS_A MMD_ATA METIS_AT_PLUS_A PARMETIS >>>>> (None) >>>>> -mat_superlu_dist_replacetinypivot: Replace tiny pivots >>>>> (None) >>>>> -mat_superlu_dist_parsymbfact: Parallel symbolic >>>>> factorization (None) >>>>> -mat_superlu_dist_fact Sparsity pattern for repeated >>>>> matrix factorization (choose one of) SamePattern SamePattern_SameRowPerm >>>>> (None) >>>>> >>>>> The options inside <> are defaults. You may try others. This might >>>>> help narrow down the bug. >>>>> >>>>> Hong >>>>> >>>>>> >>>>>> Hong >>>>>>> >>>>>>> On 10/24/2016 05:47 PM, Hong wrote: >>>>>>> >>>>>>> Barry, >>>>>>> Your change indeed fixed the error of his testing code. >>>>>>> As Satish tested, on your branch, ex16 runs smooth. >>>>>>> >>>>>>> I do not understand why on maint or master branch, ex16 creases >>>>>>> inside superlu_dist, but not with mumps. >>>>>>> >>>>>>> >>>>>>> I also confirm that ex16 runs fine with latest fix, but >>>>>>> unfortunately not my code. >>>>>>> >>>>>>> This is something to be expected, since my code preallocates once in >>>>>>> the beginning. So there is no way it can be affected by multiple >>>>>>> preallocations. Subsequently I only do matrix assembly, that makes sure >>>>>>> structure doesn't change (set to get error otherwise). >>>>>>> >>>>>>> Summary: we don't have a simple test code to debug superlu issue >>>>>>> anymore. >>>>>>> >>>>>>> Anton >>>>>>> >>>>>>> Hong >>>>>>> >>>>>>> On Mon, Oct 24, 2016 at 9:34 AM, Satish Balay >>>>>>> wrote: >>>>>>> >>>>>>>> On Mon, 24 Oct 2016, Barry Smith wrote: >>>>>>>> >>>>>>>> > >>>>>>>> > > [Or perhaps Hong is using a different test code and is >>>>>>>> observing bugs >>>>>>>> > > with superlu_dist interface..] >>>>>>>> > >>>>>>>> > She states that her test does a NEW MatCreate() for each >>>>>>>> matrix load (I cut and pasted it in the email I just sent). The bug I fixed >>>>>>>> was only related to using the SAME matrix from one MatLoad() in another >>>>>>>> MatLoad(). >>>>>>>> >>>>>>>> Ah - ok.. Sorry - wasn't thinking clearly :( >>>>>>>> >>>>>>>> Satish >>>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>> >>>>> >>>> >>> >> > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From mpovolot at purdue.edu Mon Nov 7 11:32:33 2016 From: mpovolot at purdue.edu (Michael Povolotskyi) Date: Mon, 07 Nov 2016 12:32:33 -0500 Subject: [petsc-users] PetscLogBegin Message-ID: <5820BAB1.2020701@purdue.edu> Hello everybody, which function has to be used in petsc 3.7 instead of PetscLogBegin()? Thank you, Michael. -- Michael Povolotskyi, PhD Research Assistant Professor Network for Computational Nanotechnology Hall for Discover and Learning Research, Room 441 207 South Martin Jischke Drive West Lafayette, IN 47907 Phone (765) 4949396 From bsmith at mcs.anl.gov Mon Nov 7 11:38:39 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 7 Nov 2016 11:38:39 -0600 Subject: [petsc-users] PetscLogBegin In-Reply-To: <5820BAB1.2020701@purdue.edu> References: <5820BAB1.2020701@purdue.edu> Message-ID: <96359146-756F-4F7F-92AF-A2C64CC152F8@mcs.anl.gov> PetscLogDefaultBegin() > On Nov 7, 2016, at 11:32 AM, Michael Povolotskyi wrote: > > Hello everybody, > which function has to be used in petsc 3.7 instead of PetscLogBegin()? > Thank you, > Michael. > > -- > Michael Povolotskyi, PhD > Research Assistant Professor > Network for Computational Nanotechnology > Hall for Discover and Learning Research, Room 441 > 207 South Martin Jischke Drive > West Lafayette, IN 47907 > Phone (765) 4949396 > From gotofd at gmail.com Tue Nov 8 02:57:03 2016 From: gotofd at gmail.com (Ji Zhang) Date: Tue, 8 Nov 2016 16:57:03 +0800 Subject: [petsc-users] How to dump and load a petsc object in python? Message-ID: Dear all, I'm a petsc and petsc4py user. I want to save some petsc matrices and vectors after calculation, and reload them later. However, it is difficult for me. I think one of the following two ways may have the potential to perform what I want. 1) Using the pickle (a python module), I can not load the dates after dump them, and the error message is limited. I don't know why. The related codes and error messages are presented latter. 2) Assuming I have a matrix named mat1, and save it to a binary file using petsc4py.PETSc.Viewer.createBinary() method, how can I reload the date and set to another matrix mat2 ? The code is: import pickle filename = 'debug' with open(filename + '.pickle', 'rb') as input: unpick = pickle.Unpickler(input) M = unpick.load() temp = M.getVecLeft() pass and the error message is: [0]PETSC ERROR: ------------------------------------------------------------------------ -------------------------------------------------------------------------- [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger with errorcode 59. [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run You may or may not see output from other processes, depending on [0]PETSC ERROR: to get more information on the crash. exactly when Open MPI kills them. ?? ?? ????????? ?????????? ???????????10????9?? ?100193? Best, Regards, Zhang Ji, PhD student Beijing Computational Science Research Center Zhongguancun Software Park II, No. 10 Dongbeiwang West Road, Haidian District, Beijing 100193, China -------------- next part -------------- An HTML attachment was scrubbed... URL: From mailinglists at xgm.de Tue Nov 8 03:09:16 2016 From: mailinglists at xgm.de (Florian Lindner) Date: Tue, 8 Nov 2016 10:09:16 +0100 Subject: [petsc-users] How to dump and load a petsc object in python? In-Reply-To: References: Message-ID: <9dedfbea-114b-bdda-1e97-0420ffc2db33@xgm.de> Hey, Am 08.11.2016 um 09:57 schrieb Ji Zhang: > Dear all, > > I'm a petsc and petsc4py user. I want to save some petsc matrices and vectors after calculation, and reload them later. > However, it is difficult for me. I think one of the following two ways may have the potential to perform what I want. > > 1) Using the pickle (a python module), I can not load the dates after dump them, and the error message is limited. I > don't know why. The related codes and error messages are presented latter. I doubt pickle is able to serialize the underlying datastructures of the python petsc objects. Afterall, they are only interfaces to the C stuff. > 2) Assuming I have a matrix named mat1, and save it to a binary file using petsc4py.PETSc.Viewer.createBinary() method, > how can I reload the date and set to another matrix mat2 ? I load a matrix I saved in binary from C code using: C = PETSc.Mat() C.create() C.setType(PETSc.Mat.Type.SBAIJ) C.load(PETSc.Viewer.BINARY().createBinary("/data/scratch/lindnefn/aste/B/matC_MeshA")) Best, Florian > > The code is: > > import pickle > > > filename = 'debug' > with open(filename + '.pickle', 'rb') as input: > unpick = pickle.Unpickler(input) > M = unpick.load() > temp = M.getVecLeft() > > pass > > > and the error message is: > [0]PETSC ERROR: ------------------------------------------------------------------------ > -------------------------------------------------------------------------- > [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range > MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD > [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > with errorcode 59. > [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > > [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run > You may or may not see output from other processes, depending on > [0]PETSC ERROR: to get more information on the crash. > exactly when Open MPI kills them. > > > > > ?? > ?? > ????????? > ?????????? > ???????????10????9?? ?100193? > > Best, > Regards, > Zhang Ji, PhD student > Beijing Computational Science Research Center > Zhongguancun Software Park II, No. 10 Dongbeiwang West Road, Haidian District, Beijing 100193, China From juan at tf.uni-kiel.de Wed Nov 9 00:32:38 2016 From: juan at tf.uni-kiel.de (Julian Andrej) Date: Wed, 9 Nov 2016 07:32:38 +0100 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: Message-ID: I tested a few other things and it turned out that the function added as a dirichlet boundary condition via PetscDSAddBoundary doesn't receive the time values correctly (PetscReal time is always 0.0). I also see no effect adding DMTSSetIJacobianLocal vs. not setting the jacobian function. The analytic solution i used in my attached example is the same as in the src/ts/examples/tutorials/ex32.c. Am i doing anything obviously wrong here? My next step would be to try if assembling the matrices myself and writing a custom IFunction/IJacobian which assembles the different parts of the matrix like M and J for the stiff ODE with nontrivial mass matrix (see manual section of TS -> F = M u' - f) but i think this should be obsolete right? Appreciate your help. Regards Julian On Mon, Nov 7, 2016 at 10:49 AM, Julian Andrej wrote: > Hello, > > i'm using PetscFE in combination with SNES and a hand written backward > euler solver right now and like to hand that over to TS. I have been > fiddling quite a while getting TS to work with PetscFE and have > encountered a few unclarities. > > I have looked at examples which are outdated i guess > (src/ts/examples/tutorials/ex32.c) and i am confused on how i have to > formulate the discretization of the jacobian and the residual. It > seems obvious to use the DMTSSetIFunctionLocal and > DMTSSetIJacobianLocal functions because there are prepared wrappers > from DMPlexTSComputeIFunctionFEM and DMPlexTSComputeIJacobianFEM. > > I need a Mass matrix for my problem, is that formed from the function > space information or do i have to form it myself? Is there any working > example which uses PetscFE and TS to form the DMTSSetIFunctionLocal > and DMTSSetIJacobianLocal? (grepping the tree tells me "no" > unfortunately). > > Regards > Julian -------------- next part -------------- A non-text attachment was scrubbed... Name: ex1.c Type: text/x-csrc Size: 7906 bytes Desc: not available URL: From knepley at gmail.com Wed Nov 9 07:33:09 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 9 Nov 2016 07:33:09 -0600 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: Message-ID: On Wed, Nov 9, 2016 at 12:32 AM, Julian Andrej wrote: > I tested a few other things and it turned out that the function added > as a dirichlet boundary condition via PetscDSAddBoundary doesn't > receive the time values correctly (PetscReal time is always 0.0). > I will check out your example and fix this. However, I wonder if there is a bug in your implementation: void f0_temp(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscScalar f0[]) { f0[0] = u_t[0] - 2.0; } I get du/dt - \Delta u = -2 so that if u = x^2 + y^2 + 2t, then 2 - (2 + 2) = -2 so you would want u_t + 2. If you give the Laplacian the opposite sign, this is an unstable formulation. Thanks, Matt > I also see no effect adding DMTSSetIJacobianLocal vs. not setting the > jacobian function. The analytic solution i used in my attached example > is the same as in the src/ts/examples/tutorials/ex32.c. > > Am i doing anything obviously wrong here? My next step would be to try > if assembling the matrices myself and writing a custom > IFunction/IJacobian which assembles the different parts of the matrix > like M and J for the stiff ODE with nontrivial mass matrix (see manual > section of TS -> F = M u' - f) but i think this should be obsolete > right? > > Appreciate your help. > > Regards > Julian > > On Mon, Nov 7, 2016 at 10:49 AM, Julian Andrej > wrote: > > Hello, > > > > i'm using PetscFE in combination with SNES and a hand written backward > > euler solver right now and like to hand that over to TS. I have been > > fiddling quite a while getting TS to work with PetscFE and have > > encountered a few unclarities. > > > > I have looked at examples which are outdated i guess > > (src/ts/examples/tutorials/ex32.c) and i am confused on how i have to > > formulate the discretization of the jacobian and the residual. It > > seems obvious to use the DMTSSetIFunctionLocal and > > DMTSSetIJacobianLocal functions because there are prepared wrappers > > from DMPlexTSComputeIFunctionFEM and DMPlexTSComputeIJacobianFEM. > > > > I need a Mass matrix for my problem, is that formed from the function > > space information or do i have to form it myself? Is there any working > > example which uses PetscFE and TS to form the DMTSSetIFunctionLocal > > and DMTSSetIJacobianLocal? (grepping the tree tells me "no" > > unfortunately). > > > > Regards > > Julian > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From juan at tf.uni-kiel.de Wed Nov 9 07:52:23 2016 From: juan at tf.uni-kiel.de (Julian Andrej) Date: Wed, 9 Nov 2016 14:52:23 +0100 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: Message-ID: I tried the example with different signs for the forcing, so this might be a mistake by me, yes. it doesn't change anything though. I also have to correct myself, the time for the callback in PetscDSAddBoundary changes correctly! Although u_t in all other callbacks seems to remain zero. I am out of ideas on my side though :) On Wed, Nov 9, 2016 at 2:33 PM, Matthew Knepley wrote: > On Wed, Nov 9, 2016 at 12:32 AM, Julian Andrej wrote: >> >> I tested a few other things and it turned out that the function added >> as a dirichlet boundary condition via PetscDSAddBoundary doesn't >> receive the time values correctly (PetscReal time is always 0.0). > > > I will check out your example and fix this. However, I wonder if there is a > bug in your implementation: > > void f0_temp(PetscInt dim, PetscInt Nf, PetscInt NfAux, > const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar > u[], const PetscScalar u_t[], const PetscScalar u_x[], > const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar > a[], const PetscScalar a_t[], const PetscScalar a_x[], > PetscReal t, const PetscReal x[], PetscScalar f0[]) > { > f0[0] = u_t[0] - 2.0; > } > > I get > > du/dt - \Delta u = -2 > > so that if u = x^2 + y^2 + 2t, then > > 2 - (2 + 2) = -2 > > so you would want u_t + 2. > > If you give the Laplacian the opposite sign, this is an unstable > formulation. > > Thanks, > > Matt > >> >> I also see no effect adding DMTSSetIJacobianLocal vs. not setting the >> jacobian function. The analytic solution i used in my attached example >> is the same as in the src/ts/examples/tutorials/ex32.c. >> >> Am i doing anything obviously wrong here? My next step would be to try >> if assembling the matrices myself and writing a custom >> IFunction/IJacobian which assembles the different parts of the matrix >> like M and J for the stiff ODE with nontrivial mass matrix (see manual >> section of TS -> F = M u' - f) but i think this should be obsolete >> right? >> >> Appreciate your help. >> >> Regards >> Julian >> >> On Mon, Nov 7, 2016 at 10:49 AM, Julian Andrej >> wrote: >> > Hello, >> > >> > i'm using PetscFE in combination with SNES and a hand written backward >> > euler solver right now and like to hand that over to TS. I have been >> > fiddling quite a while getting TS to work with PetscFE and have >> > encountered a few unclarities. >> > >> > I have looked at examples which are outdated i guess >> > (src/ts/examples/tutorials/ex32.c) and i am confused on how i have to >> > formulate the discretization of the jacobian and the residual. It >> > seems obvious to use the DMTSSetIFunctionLocal and >> > DMTSSetIJacobianLocal functions because there are prepared wrappers >> > from DMPlexTSComputeIFunctionFEM and DMPlexTSComputeIJacobianFEM. >> > >> > I need a Mass matrix for my problem, is that formed from the function >> > space information or do i have to form it myself? Is there any working >> > example which uses PetscFE and TS to form the DMTSSetIFunctionLocal >> > and DMTSSetIJacobianLocal? (grepping the tree tells me "no" >> > unfortunately). >> > >> > Regards >> > Julian > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener From knepley at gmail.com Wed Nov 9 08:14:33 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 9 Nov 2016 08:14:33 -0600 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: Message-ID: On Wed, Nov 9, 2016 at 7:52 AM, Julian Andrej wrote: > I tried the example with different signs for the forcing, so this > might be a mistake by me, yes. it doesn't change anything though. I > also have to correct myself, the time for the callback in > PetscDSAddBoundary changes correctly! Although u_t in all other > callbacks seems to remain zero. > > I am out of ideas on my side though :) The bug is that the boundary conditions are not being properly enforced. I am fixing it now. Thanks for the simple example demonstrating this. It made it much much easier to debug. Matt > On Wed, Nov 9, 2016 at 2:33 PM, Matthew Knepley wrote: > > On Wed, Nov 9, 2016 at 12:32 AM, Julian Andrej > wrote: > >> > >> I tested a few other things and it turned out that the function added > >> as a dirichlet boundary condition via PetscDSAddBoundary doesn't > >> receive the time values correctly (PetscReal time is always 0.0). > > > > > > I will check out your example and fix this. However, I wonder if there > is a > > bug in your implementation: > > > > void f0_temp(PetscInt dim, PetscInt Nf, PetscInt NfAux, > > const PetscInt uOff[], const PetscInt uOff_x[], const > PetscScalar > > u[], const PetscScalar u_t[], const PetscScalar u_x[], > > const PetscInt aOff[], const PetscInt aOff_x[], const > PetscScalar > > a[], const PetscScalar a_t[], const PetscScalar a_x[], > > PetscReal t, const PetscReal x[], PetscScalar f0[]) > > { > > f0[0] = u_t[0] - 2.0; > > } > > > > I get > > > > du/dt - \Delta u = -2 > > > > so that if u = x^2 + y^2 + 2t, then > > > > 2 - (2 + 2) = -2 > > > > so you would want u_t + 2. > > > > If you give the Laplacian the opposite sign, this is an unstable > > formulation. > > > > Thanks, > > > > Matt > > > >> > >> I also see no effect adding DMTSSetIJacobianLocal vs. not setting the > >> jacobian function. The analytic solution i used in my attached example > >> is the same as in the src/ts/examples/tutorials/ex32.c. > >> > >> Am i doing anything obviously wrong here? My next step would be to try > >> if assembling the matrices myself and writing a custom > >> IFunction/IJacobian which assembles the different parts of the matrix > >> like M and J for the stiff ODE with nontrivial mass matrix (see manual > >> section of TS -> F = M u' - f) but i think this should be obsolete > >> right? > >> > >> Appreciate your help. > >> > >> Regards > >> Julian > >> > >> On Mon, Nov 7, 2016 at 10:49 AM, Julian Andrej > >> wrote: > >> > Hello, > >> > > >> > i'm using PetscFE in combination with SNES and a hand written backward > >> > euler solver right now and like to hand that over to TS. I have been > >> > fiddling quite a while getting TS to work with PetscFE and have > >> > encountered a few unclarities. > >> > > >> > I have looked at examples which are outdated i guess > >> > (src/ts/examples/tutorials/ex32.c) and i am confused on how i have to > >> > formulate the discretization of the jacobian and the residual. It > >> > seems obvious to use the DMTSSetIFunctionLocal and > >> > DMTSSetIJacobianLocal functions because there are prepared wrappers > >> > from DMPlexTSComputeIFunctionFEM and DMPlexTSComputeIJacobianFEM. > >> > > >> > I need a Mass matrix for my problem, is that formed from the function > >> > space information or do i have to form it myself? Is there any working > >> > example which uses PetscFE and TS to form the DMTSSetIFunctionLocal > >> > and DMTSSetIJacobianLocal? (grepping the tree tells me "no" > >> > unfortunately). > >> > > >> > Regards > >> > Julian > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Wed Nov 9 14:25:20 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 9 Nov 2016 14:25:20 -0600 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: Message-ID: On Wed, Nov 9, 2016 at 8:14 AM, Matthew Knepley wrote: > On Wed, Nov 9, 2016 at 7:52 AM, Julian Andrej wrote: > >> I tried the example with different signs for the forcing, so this >> might be a mistake by me, yes. it doesn't change anything though. I >> also have to correct myself, the time for the callback in >> PetscDSAddBoundary changes correctly! Although u_t in all other >> callbacks seems to remain zero. >> >> I am out of ideas on my side though :) > > > The bug is that the boundary conditions are not being properly enforced. I > am fixing it now. > Thanks for the simple example demonstrating this. It made it much much > easier to debug. > I think this works. Let me know if you agree. There is the business of u_t on the boundary, which is not handled right now. I am putting that in, but the homogeneous values for that is still alright here. Thanks, Matt > Matt > > >> On Wed, Nov 9, 2016 at 2:33 PM, Matthew Knepley >> wrote: >> > On Wed, Nov 9, 2016 at 12:32 AM, Julian Andrej >> wrote: >> >> >> >> I tested a few other things and it turned out that the function added >> >> as a dirichlet boundary condition via PetscDSAddBoundary doesn't >> >> receive the time values correctly (PetscReal time is always 0.0). >> > >> > >> > I will check out your example and fix this. However, I wonder if there >> is a >> > bug in your implementation: >> > >> > void f0_temp(PetscInt dim, PetscInt Nf, PetscInt NfAux, >> > const PetscInt uOff[], const PetscInt uOff_x[], const >> PetscScalar >> > u[], const PetscScalar u_t[], const PetscScalar u_x[], >> > const PetscInt aOff[], const PetscInt aOff_x[], const >> PetscScalar >> > a[], const PetscScalar a_t[], const PetscScalar a_x[], >> > PetscReal t, const PetscReal x[], PetscScalar f0[]) >> > { >> > f0[0] = u_t[0] - 2.0; >> > } >> > >> > I get >> > >> > du/dt - \Delta u = -2 >> > >> > so that if u = x^2 + y^2 + 2t, then >> > >> > 2 - (2 + 2) = -2 >> > >> > so you would want u_t + 2. >> > >> > If you give the Laplacian the opposite sign, this is an unstable >> > formulation. >> > >> > Thanks, >> > >> > Matt >> > >> >> >> >> I also see no effect adding DMTSSetIJacobianLocal vs. not setting the >> >> jacobian function. The analytic solution i used in my attached example >> >> is the same as in the src/ts/examples/tutorials/ex32.c. >> >> >> >> Am i doing anything obviously wrong here? My next step would be to try >> >> if assembling the matrices myself and writing a custom >> >> IFunction/IJacobian which assembles the different parts of the matrix >> >> like M and J for the stiff ODE with nontrivial mass matrix (see manual >> >> section of TS -> F = M u' - f) but i think this should be obsolete >> >> right? >> >> >> >> Appreciate your help. >> >> >> >> Regards >> >> Julian >> >> >> >> On Mon, Nov 7, 2016 at 10:49 AM, Julian Andrej >> >> wrote: >> >> > Hello, >> >> > >> >> > i'm using PetscFE in combination with SNES and a hand written >> backward >> >> > euler solver right now and like to hand that over to TS. I have been >> >> > fiddling quite a while getting TS to work with PetscFE and have >> >> > encountered a few unclarities. >> >> > >> >> > I have looked at examples which are outdated i guess >> >> > (src/ts/examples/tutorials/ex32.c) and i am confused on how i have >> to >> >> > formulate the discretization of the jacobian and the residual. It >> >> > seems obvious to use the DMTSSetIFunctionLocal and >> >> > DMTSSetIJacobianLocal functions because there are prepared wrappers >> >> > from DMPlexTSComputeIFunctionFEM and DMPlexTSComputeIJacobianFEM. >> >> > >> >> > I need a Mass matrix for my problem, is that formed from the function >> >> > space information or do i have to form it myself? Is there any >> working >> >> > example which uses PetscFE and TS to form the DMTSSetIFunctionLocal >> >> > and DMTSSetIJacobianLocal? (grepping the tree tells me "no" >> >> > unfortunately). >> >> > >> >> > Regards >> >> > Julian >> > >> > >> > >> > >> > -- >> > What most experimenters take for granted before they begin their >> experiments >> > is infinitely more interesting than any results to which their >> experiments >> > lead. >> > -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: ex1.c Type: text/x-csrc Size: 7947 bytes Desc: not available URL: From leejearl at 126.com Wed Nov 9 23:54:04 2016 From: leejearl at 126.com (leejearl) Date: Thu, 10 Nov 2016 13:54:04 +0800 Subject: [petsc-users] how to output components of a section In-Reply-To: References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> <94fd3815-37a2-d847-3571-2961681e51d9@126.com> Message-ID: Hi, Matt Thanks for your reply, and will it be solved in the newest version of PETSc? leejearl On 2016?11?07? 20:09, Matthew Knepley wrote: > On Mon, Nov 7, 2016 at 4:17 AM, Sander Arens > wrote: > > Ok, I see what happened. > If you create a a vector with DMGetGlobalVector, the VecView > function is overloaded with some DM-specific VecView function > (e.g. VecView_Plex), but this doesn't happen with the vec that you > get from VecGetSubVector. So one way to solve this would be to > create a global vector from your subdm and do the scatters yourself. > But I think it would be better if these VecView operations could > be copied from the original vec in VecGetSubVector? > > > You are right. I am moving this to petsc-dev temporarily for discussion. > > Thanks, > > Matt > > Thanks, > Sander > > On 7 November 2016 at 09:08, leejearl > wrote: > > Hi Sander: > Thank your for your assistance, but it is still not works. > The code is now as follows: > Vec subX, X; > DM subdm; > IS subIS; > PetscInt numSubFields = 2; > PetscInt subFields[2]; > subFields[0] = 0; subFields[1] =1 ; > ierr = DMCreateSubDM(dm, numSubFields, subFields, > &subIS, &subdm);CHKERRQ(ierr); > ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); > ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); > ierr = VecSetDM(subX, dm);CHKERRQ(ierr); > > ierr = PetscObjectSetName((PetscObject) subX, > "sol.");CHKERRQ(ierr); > ierr = PetscViewerSetType(*viewer, > PETSCVIEWERVTK);CHKERRQ(ierr); > ierr = PetscViewerPushFormat(*viewer, > PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); > ierr = PetscViewerFileSetName(*viewer, > "subsol.vtu");CHKERRQ(ierr); > ierr = VecView(subX, viewer);CHKERRQ(ierr); > ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); > ierr = VecRestoreSubVector(X, subIS, > &subX);CHKERRQ(ierr); > DMDestroy(&subdm); > ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); > > > > I have add "VecSetDm", but it has not output file. > > Thanks > leejearl > > On 2016?11?07? 15:35, Sander Arens wrote: >> Does it work if you put >> ierr = VecSetDM(subX, subdm);CHKERRQ(ierr); >> before the VecView? >> >> Thanks, >> Sander >> >> On 7 November 2016 at 03:50, leejearl > > wrote: >> >> Hi, Barry: >> I must have some make some mistakes. I post the code >> as follows: >> Vec subX, X; >> DM subdm; >> IS subIS; >> PetscInt numSubFields = 2; >> PetscInt subFields[2]; >> subFields[0] = 0; subFields[1] =1 ; >> ierr = DMCreateSubDM(dm, numSubFields, subFields, >> &subIS, &subdm);CHKERRQ(ierr); >> ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); >> ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); >> ierr = PetscObjectSetName((PetscObject) subX, >> "sol.");CHKERRQ(ierr); >> ierr = PetscViewerSetType(*viewer, >> PETSCVIEWERVTK);CHKERRQ(ierr); >> ierr = PetscViewerPushFormat(*viewer, >> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >> ierr = PetscViewerFileSetName(*viewer, >> "subsol.vtu");CHKERRQ(ierr); >> ierr = VecView(subX, viewer);CHKERRQ(ierr); >> ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); >> ierr = VecRestoreSubVector(X, subIS, >> &subX);CHKERRQ(ierr); >> DMDestroy(&subdm); >> ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); >> >> There are three fields in dm, and I want to obtain the >> vector of the two of them. But, I can not >> get the output file ?subsol.vtu?. Can you help me with >> the code? >> >> Thanks >> leejearl >> >> On 2016?11?06? 12:21, Barry Smith wrote: >> >> On Nov 5, 2016, at 8:36 PM, leejearl >> > wrote: >> >> Hi Sander: >> Thank you for your advices, and it works. >> But it is only available in th local vector. >> >> This should work on the global vector. Please send >> the full output of the error messages when used with >> a global vector. >> >> Barry >> >> Is there any methods to reach this purposes in >> the global vector? >> Thanks >> leejearl >> On 2016?11?05? 19:29, Sander Arens wrote: >> >> You can first obtain an IS with >> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMCreateSubDM.html >> >> and with that you can obtain a subvector with >> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Vec/VecGetSubVector.html >> >> which you can then view the usual way. >> >> Thanks, >> Sander >> >> On 5 November 2016 at 12:17, leejearl >> > >> wrote: >> Hi, all: >> >> I meet a problems which I can not >> overcome. The programe is like the code in >> >> "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/examples/tutorials/ex1.c.html >> ". >> >> The code create a section which has three >> fields: u,v,w. How can I output the fields u >> and v without together with w? >> >> Thanks! >> >> >> leejearl >> >> >> >> >> >> >> > > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -- ?? ??????????????? Phone: 17792092487 QQ: 188524324 -------------- next part -------------- An HTML attachment was scrubbed... URL: From juan at tf.uni-kiel.de Thu Nov 10 01:31:01 2016 From: juan at tf.uni-kiel.de (Julian Andrej) Date: Thu, 10 Nov 2016 08:31:01 +0100 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: Message-ID: I'm getting the correct solution now, thanks! There are still a few open questions. 1. The mass term is necessary _and_ using the u_tShift value if i provide the jacobian. After reading the manual countless times, i still don't get what the u_tShift value tells me in this context. Are there any resources which you could point me to? 2. Is DMProjectFunction necessary _before_ TSSolve? This acts like an initial condition if i'm not mistaken. 3. A more in depth question i guess. Where is the "mass action" formed? As i could see by stepping through the debugger, there is just a formed action for the residual equation. It seems way over my understanding how this formulation works out. I'd also appreciate resources on that if thats possible. Thanks again. Julian On Wed, Nov 9, 2016 at 9:25 PM, Matthew Knepley wrote: > On Wed, Nov 9, 2016 at 8:14 AM, Matthew Knepley wrote: >> >> On Wed, Nov 9, 2016 at 7:52 AM, Julian Andrej wrote: >>> >>> I tried the example with different signs for the forcing, so this >>> might be a mistake by me, yes. it doesn't change anything though. I >>> also have to correct myself, the time for the callback in >>> PetscDSAddBoundary changes correctly! Although u_t in all other >>> callbacks seems to remain zero. >>> >>> I am out of ideas on my side though :) >> >> >> The bug is that the boundary conditions are not being properly enforced. I >> am fixing it now. >> Thanks for the simple example demonstrating this. It made it much much >> easier to debug. > > > I think this works. Let me know if you agree. > > There is the business of u_t on the boundary, which is not handled right > now. I am putting that > in, but the homogeneous values for that is still alright here. > > Thanks, > > Matt > >> >> Matt >> >>> >>> On Wed, Nov 9, 2016 at 2:33 PM, Matthew Knepley >>> wrote: >>> > On Wed, Nov 9, 2016 at 12:32 AM, Julian Andrej >>> > wrote: >>> >> >>> >> I tested a few other things and it turned out that the function added >>> >> as a dirichlet boundary condition via PetscDSAddBoundary doesn't >>> >> receive the time values correctly (PetscReal time is always 0.0). >>> > >>> > >>> > I will check out your example and fix this. However, I wonder if there >>> > is a >>> > bug in your implementation: >>> > >>> > void f0_temp(PetscInt dim, PetscInt Nf, PetscInt NfAux, >>> > const PetscInt uOff[], const PetscInt uOff_x[], const >>> > PetscScalar >>> > u[], const PetscScalar u_t[], const PetscScalar u_x[], >>> > const PetscInt aOff[], const PetscInt aOff_x[], const >>> > PetscScalar >>> > a[], const PetscScalar a_t[], const PetscScalar a_x[], >>> > PetscReal t, const PetscReal x[], PetscScalar f0[]) >>> > { >>> > f0[0] = u_t[0] - 2.0; >>> > } >>> > >>> > I get >>> > >>> > du/dt - \Delta u = -2 >>> > >>> > so that if u = x^2 + y^2 + 2t, then >>> > >>> > 2 - (2 + 2) = -2 >>> > >>> > so you would want u_t + 2. >>> > >>> > If you give the Laplacian the opposite sign, this is an unstable >>> > formulation. >>> > >>> > Thanks, >>> > >>> > Matt >>> > >>> >> >>> >> I also see no effect adding DMTSSetIJacobianLocal vs. not setting the >>> >> jacobian function. The analytic solution i used in my attached example >>> >> is the same as in the src/ts/examples/tutorials/ex32.c. >>> >> >>> >> Am i doing anything obviously wrong here? My next step would be to try >>> >> if assembling the matrices myself and writing a custom >>> >> IFunction/IJacobian which assembles the different parts of the matrix >>> >> like M and J for the stiff ODE with nontrivial mass matrix (see manual >>> >> section of TS -> F = M u' - f) but i think this should be obsolete >>> >> right? >>> >> >>> >> Appreciate your help. >>> >> >>> >> Regards >>> >> Julian >>> >> >>> >> On Mon, Nov 7, 2016 at 10:49 AM, Julian Andrej >>> >> wrote: >>> >> > Hello, >>> >> > >>> >> > i'm using PetscFE in combination with SNES and a hand written >>> >> > backward >>> >> > euler solver right now and like to hand that over to TS. I have been >>> >> > fiddling quite a while getting TS to work with PetscFE and have >>> >> > encountered a few unclarities. >>> >> > >>> >> > I have looked at examples which are outdated i guess >>> >> > (src/ts/examples/tutorials/ex32.c) and i am confused on how i have >>> >> > to >>> >> > formulate the discretization of the jacobian and the residual. It >>> >> > seems obvious to use the DMTSSetIFunctionLocal and >>> >> > DMTSSetIJacobianLocal functions because there are prepared wrappers >>> >> > from DMPlexTSComputeIFunctionFEM and DMPlexTSComputeIJacobianFEM. >>> >> > >>> >> > I need a Mass matrix for my problem, is that formed from the >>> >> > function >>> >> > space information or do i have to form it myself? Is there any >>> >> > working >>> >> > example which uses PetscFE and TS to form the DMTSSetIFunctionLocal >>> >> > and DMTSSetIJacobianLocal? (grepping the tree tells me "no" >>> >> > unfortunately). >>> >> > >>> >> > Regards >>> >> > Julian >>> > >>> > >>> > >>> > >>> > -- >>> > What most experimenters take for granted before they begin their >>> > experiments >>> > is infinitely more interesting than any results to which their >>> > experiments >>> > lead. >>> > -- Norbert Wiener >> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener From knepley at gmail.com Thu Nov 10 04:42:32 2016 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 10 Nov 2016 04:42:32 -0600 Subject: [petsc-users] how to output components of a section In-Reply-To: References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> <94fd3815-37a2-d847-3571-2961681e51d9@126.com> Message-ID: On Wed, Nov 9, 2016 at 11:54 PM, leejearl wrote: > Hi, Matt > Thanks for your reply, and will it be solved in the newest version of > PETSc? > Yes, we are just working out how to do it. I might not actually code it until classes end Dec. 2. Is that an okay timeline? Thanks, Matt > > leejearl > > > On 2016?11?07? 20:09, Matthew Knepley wrote: > > On Mon, Nov 7, 2016 at 4:17 AM, Sander Arens > wrote: > >> Ok, I see what happened. >> If you create a a vector with DMGetGlobalVector, the VecView function is >> overloaded with some DM-specific VecView function (e.g. VecView_Plex), but >> this doesn't happen with the vec that you get from VecGetSubVector. So one >> way to solve this would be to create a global vector from your subdm and do >> the scatters yourself. >> But I think it would be better if these VecView operations could be >> copied from the original vec in VecGetSubVector? >> > > You are right. I am moving this to petsc-dev temporarily for discussion. > > Thanks, > > Matt > > >> Thanks, >> Sander >> >> On 7 November 2016 at 09:08, leejearl wrote: >> >>> Hi Sander: >>> Thank your for your assistance, but it is still not works. The code >>> is now as follows: >>> Vec subX, X; >>> DM subdm; >>> IS subIS; >>> PetscInt numSubFields = 2; >>> PetscInt subFields[2]; >>> subFields[0] = 0; subFields[1] =1 ; >>> ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, >>> &subdm);CHKERRQ(ierr); >>> ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); >>> ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); >>> ierr = VecSetDM(subX, dm);CHKERRQ(ierr); >>> >>>> ierr = PetscObjectSetName((PetscObject) subX, >>>> "sol.");CHKERRQ(ierr); >>>> ierr = PetscViewerSetType(*viewer, >>>> PETSCVIEWERVTK);CHKERRQ(ierr); >>>> ierr = PetscViewerPushFormat(*viewer, >>>> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >>>> ierr = PetscViewerFileSetName(*viewer, >>>> "subsol.vtu");CHKERRQ(ierr); >>>> ierr = VecView(subX, viewer);CHKERRQ(ierr); >>>> ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); >>>> ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); >>>> DMDestroy(&subdm); >>>> ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); >>>> >>> >>> >>> I have add "VecSetDm", but it has not output file. >>> >>> Thanks >>> leejearl >>> >>> On 2016?11?07? 15:35, Sander Arens wrote: >>> >>> Does it work if you put >>> ierr = VecSetDM(subX, subdm);CHKERRQ(ierr); >>> before the VecView? >>> >>> Thanks, >>> Sander >>> >>> On 7 November 2016 at 03:50, leejearl wrote: >>> >>>> Hi, Barry: >>>> I must have some make some mistakes. I post the code as follows: >>>> Vec subX, X; >>>> DM subdm; >>>> IS subIS; >>>> PetscInt numSubFields = 2; >>>> PetscInt subFields[2]; >>>> subFields[0] = 0; subFields[1] =1 ; >>>> ierr = DMCreateSubDM(dm, numSubFields, subFields, &subIS, >>>> &subdm);CHKERRQ(ierr); >>>> ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); >>>> ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); >>>> ierr = PetscObjectSetName((PetscObject) subX, >>>> "sol.");CHKERRQ(ierr); >>>> ierr = PetscViewerSetType(*viewer, >>>> PETSCVIEWERVTK);CHKERRQ(ierr); >>>> ierr = PetscViewerPushFormat(*viewer, >>>> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >>>> ierr = PetscViewerFileSetName(*viewer, >>>> "subsol.vtu");CHKERRQ(ierr); >>>> ierr = VecView(subX, viewer);CHKERRQ(ierr); >>>> ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); >>>> ierr = VecRestoreSubVector(X, subIS, &subX);CHKERRQ(ierr); >>>> DMDestroy(&subdm); >>>> ierr = DMRestoreGlobalVector(dm, &X);CHKERRQ(ierr); >>>> >>>> There are three fields in dm, and I want to obtain the vector of the >>>> two of them. But, I can not >>>> get the output file ?subsol.vtu?. Can you help me with the code? >>>> >>>> Thanks >>>> leejearl >>>> >>>> On 2016?11?06? 12:21, Barry Smith wrote: >>>> >>>>> On Nov 5, 2016, at 8:36 PM, leejearl wrote: >>>>>> >>>>>> Hi Sander: >>>>>> Thank you for your advices, and it works. But it is only >>>>>> available in th local vector. >>>>>> >>>>> This should work on the global vector. Please send the full output >>>>> of the error messages when used with a global vector. >>>>> >>>>> Barry >>>>> >>>>> Is there any methods to reach this purposes in the global vector? >>>>>> Thanks >>>>>> leejearl >>>>>> On 2016?11?05? 19:29, Sander Arens wrote: >>>>>> >>>>>>> You can first obtain an IS with >>>>>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/ >>>>>>> DM/DMCreateSubDM.html >>>>>>> and with that you can obtain a subvector with >>>>>>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/ >>>>>>> Vec/VecGetSubVector.html >>>>>>> which you can then view the usual way. >>>>>>> >>>>>>> Thanks, >>>>>>> Sander >>>>>>> >>>>>>> On 5 November 2016 at 12:17, leejearl wrote: >>>>>>> Hi, all: >>>>>>> >>>>>>> I meet a problems which I can not overcome. The programe is >>>>>>> like the code in >>>>>>> >>>>>>> "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/ple >>>>>>> x/examples/tutorials/ex1.c.html". >>>>>>> >>>>>>> The code create a section which has three fields: u,v,w. How can >>>>>>> I output the fields u and v without together with w? >>>>>>> >>>>>>> Thanks! >>>>>>> >>>>>>> >>>>>>> leejearl >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>> >>>> >>> >>> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- > ?? > ??????????????? > Phone: 17792092487 > QQ: 188524324 > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Nov 10 06:15:37 2016 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 10 Nov 2016 06:15:37 -0600 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: Message-ID: On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej wrote: > I'm getting the correct solution now, thanks! There are still a few > open questions. > > 1. The mass term is necessary _and_ using the u_tShift value if i > provide the jacobian. After reading the manual countless times, i > still don't get what the u_tShift value tells me in this context. Are > there any resources which you could point me to? > The manual is always a lagging resource because we are trying things out. I learned about this by reading examples. The idea is the following. We have an implicit definition of our timestepping method F(u, grad u, u_t, x, t) = 0 which is not unlike a Lagrangian description of a mechanical system. The Jacobian can be considered formally to have two parts, dF/du and dF/du_t just as in the Lagrangian setting. The u_tShift variable is the multiplier for dF/du_t so that you actually form dF/du + u_tShift dF/du_t > 2. Is DMProjectFunction necessary _before_ TSSolve? This acts like an > initial condition if i'm not mistaken. > Yes, this is the initial condition. > 3. A more in depth question i guess. Where is the "mass action" > formed? As i could see by stepping through the debugger, there is just > a formed action for the residual equation. It seems way over my > understanding how this formulation works out. I'd also appreciate > resources on that if thats possible. > Jed is the only one who understands this completely. However, I guess by "mass action" you mean the dF/du_t term. In the explicit methods, you just have u_t + ..., so dF/du_t = M for finite element methods. So you are putting that there in FormIJacobian(). In the simplest case of backwards Euler then u_tShift would be 1/dt. Thanks, Matt > Thanks again. > > Julian > > On Wed, Nov 9, 2016 at 9:25 PM, Matthew Knepley wrote: > > On Wed, Nov 9, 2016 at 8:14 AM, Matthew Knepley > wrote: > >> > >> On Wed, Nov 9, 2016 at 7:52 AM, Julian Andrej > wrote: > >>> > >>> I tried the example with different signs for the forcing, so this > >>> might be a mistake by me, yes. it doesn't change anything though. I > >>> also have to correct myself, the time for the callback in > >>> PetscDSAddBoundary changes correctly! Although u_t in all other > >>> callbacks seems to remain zero. > >>> > >>> I am out of ideas on my side though :) > >> > >> > >> The bug is that the boundary conditions are not being properly > enforced. I > >> am fixing it now. > >> Thanks for the simple example demonstrating this. It made it much much > >> easier to debug. > > > > > > I think this works. Let me know if you agree. > > > > There is the business of u_t on the boundary, which is not handled right > > now. I am putting that > > in, but the homogeneous values for that is still alright here. > > > > Thanks, > > > > Matt > > > >> > >> Matt > >> > >>> > >>> On Wed, Nov 9, 2016 at 2:33 PM, Matthew Knepley > >>> wrote: > >>> > On Wed, Nov 9, 2016 at 12:32 AM, Julian Andrej > >>> > wrote: > >>> >> > >>> >> I tested a few other things and it turned out that the function > added > >>> >> as a dirichlet boundary condition via PetscDSAddBoundary doesn't > >>> >> receive the time values correctly (PetscReal time is always 0.0). > >>> > > >>> > > >>> > I will check out your example and fix this. However, I wonder if > there > >>> > is a > >>> > bug in your implementation: > >>> > > >>> > void f0_temp(PetscInt dim, PetscInt Nf, PetscInt NfAux, > >>> > const PetscInt uOff[], const PetscInt uOff_x[], const > >>> > PetscScalar > >>> > u[], const PetscScalar u_t[], const PetscScalar u_x[], > >>> > const PetscInt aOff[], const PetscInt aOff_x[], const > >>> > PetscScalar > >>> > a[], const PetscScalar a_t[], const PetscScalar a_x[], > >>> > PetscReal t, const PetscReal x[], PetscScalar f0[]) > >>> > { > >>> > f0[0] = u_t[0] - 2.0; > >>> > } > >>> > > >>> > I get > >>> > > >>> > du/dt - \Delta u = -2 > >>> > > >>> > so that if u = x^2 + y^2 + 2t, then > >>> > > >>> > 2 - (2 + 2) = -2 > >>> > > >>> > so you would want u_t + 2. > >>> > > >>> > If you give the Laplacian the opposite sign, this is an unstable > >>> > formulation. > >>> > > >>> > Thanks, > >>> > > >>> > Matt > >>> > > >>> >> > >>> >> I also see no effect adding DMTSSetIJacobianLocal vs. not setting > the > >>> >> jacobian function. The analytic solution i used in my attached > example > >>> >> is the same as in the src/ts/examples/tutorials/ex32.c. > >>> >> > >>> >> Am i doing anything obviously wrong here? My next step would be to > try > >>> >> if assembling the matrices myself and writing a custom > >>> >> IFunction/IJacobian which assembles the different parts of the > matrix > >>> >> like M and J for the stiff ODE with nontrivial mass matrix (see > manual > >>> >> section of TS -> F = M u' - f) but i think this should be obsolete > >>> >> right? > >>> >> > >>> >> Appreciate your help. > >>> >> > >>> >> Regards > >>> >> Julian > >>> >> > >>> >> On Mon, Nov 7, 2016 at 10:49 AM, Julian Andrej > > >>> >> wrote: > >>> >> > Hello, > >>> >> > > >>> >> > i'm using PetscFE in combination with SNES and a hand written > >>> >> > backward > >>> >> > euler solver right now and like to hand that over to TS. I have > been > >>> >> > fiddling quite a while getting TS to work with PetscFE and have > >>> >> > encountered a few unclarities. > >>> >> > > >>> >> > I have looked at examples which are outdated i guess > >>> >> > (src/ts/examples/tutorials/ex32.c) and i am confused on how i > have > >>> >> > to > >>> >> > formulate the discretization of the jacobian and the residual. It > >>> >> > seems obvious to use the DMTSSetIFunctionLocal and > >>> >> > DMTSSetIJacobianLocal functions because there are prepared > wrappers > >>> >> > from DMPlexTSComputeIFunctionFEM and DMPlexTSComputeIJacobianFEM. > >>> >> > > >>> >> > I need a Mass matrix for my problem, is that formed from the > >>> >> > function > >>> >> > space information or do i have to form it myself? Is there any > >>> >> > working > >>> >> > example which uses PetscFE and TS to form the > DMTSSetIFunctionLocal > >>> >> > and DMTSSetIJacobianLocal? (grepping the tree tells me "no" > >>> >> > unfortunately). > >>> >> > > >>> >> > Regards > >>> >> > Julian > >>> > > >>> > > >>> > > >>> > > >>> > -- > >>> > What most experimenters take for granted before they begin their > >>> > experiments > >>> > is infinitely more interesting than any results to which their > >>> > experiments > >>> > lead. > >>> > -- Norbert Wiener > >> > >> > >> > >> > >> -- > >> What most experimenters take for granted before they begin their > >> experiments is infinitely more interesting than any results to which > their > >> experiments lead. > >> -- Norbert Wiener > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From leejearl at 126.com Thu Nov 10 07:04:26 2016 From: leejearl at 126.com (leejearl) Date: Thu, 10 Nov 2016 21:04:26 +0800 Subject: [petsc-users] how to output components of a section In-Reply-To: References: <6960ae94-e1a1-9e98-a74e-b2988f1d6d62@126.com> <58e6af87-14f1-0fd9-b055-bb2c1479a6fd@126.com> <0FE14F74-C6A6-4495-A47C-073C2CDAB89E@mcs.anl.gov> <94fd3815-37a2-d847-3571-2961681e51d9@126.com> Message-ID: Hi Matt: It is okay. I will wait for your coding. Thanks leejearl On 2016?11?10? 18:42, Matthew Knepley wrote: > On Wed, Nov 9, 2016 at 11:54 PM, leejearl > wrote: > > Hi, Matt > Thanks for your reply, and will it be solved in the newest > version of PETSc? > > > Yes, we are just working out how to do it. I might not actually code > it until classes end Dec. 2. Is that > an okay timeline? > > Thanks, > > Matt > > > leejearl > > > On 2016?11?07? 20:09, Matthew Knepley wrote: >> On Mon, Nov 7, 2016 at 4:17 AM, Sander Arens >> > wrote: >> >> Ok, I see what happened. >> If you create a a vector with DMGetGlobalVector, the VecView >> function is overloaded with some DM-specific VecView function >> (e.g. VecView_Plex), but this doesn't happen with the vec >> that you get from VecGetSubVector. So one way to solve this >> would be to create a global vector from your subdm and do the >> scatters yourself. >> But I think it would be better if these VecView operations >> could be copied from the original vec in VecGetSubVector? >> >> >> You are right. I am moving this to petsc-dev temporarily for >> discussion. >> >> Thanks, >> >> Matt >> >> Thanks, >> Sander >> >> On 7 November 2016 at 09:08, leejearl > > wrote: >> >> Hi Sander: >> Thank your for your assistance, but it is still not >> works. The code is now as follows: >> Vec subX, X; >> DM subdm; >> IS subIS; >> PetscInt numSubFields = 2; >> PetscInt subFields[2]; >> subFields[0] = 0; subFields[1] =1 ; >> ierr = DMCreateSubDM(dm, numSubFields, subFields, >> &subIS, &subdm);CHKERRQ(ierr); >> ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); >> ierr = VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); >> ierr = VecSetDM(subX, dm);CHKERRQ(ierr); >> >> ierr = PetscObjectSetName((PetscObject) subX, >> "sol.");CHKERRQ(ierr); >> ierr = PetscViewerSetType(*viewer, >> PETSCVIEWERVTK);CHKERRQ(ierr); >> ierr = PetscViewerPushFormat(*viewer, >> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >> ierr = PetscViewerFileSetName(*viewer, >> "subsol.vtu");CHKERRQ(ierr); >> ierr = VecView(subX, viewer);CHKERRQ(ierr); >> ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); >> ierr = VecRestoreSubVector(X, subIS, >> &subX);CHKERRQ(ierr); >> DMDestroy(&subdm); >> ierr = DMRestoreGlobalVector(dm, >> &X);CHKERRQ(ierr); >> >> >> >> I have add "VecSetDm", but it has not output file. >> >> Thanks >> leejearl >> >> On 2016?11?07? 15:35, Sander Arens wrote: >>> Does it work if you put >>> ierr = VecSetDM(subX, subdm);CHKERRQ(ierr); >>> before the VecView? >>> >>> Thanks, >>> Sander >>> >>> On 7 November 2016 at 03:50, leejearl >> > wrote: >>> >>> Hi, Barry: >>> I must have some make some mistakes. I post the >>> code as follows: >>> Vec subX, X; >>> DM subdm; >>> IS subIS; >>> PetscInt numSubFields = 2; >>> PetscInt subFields[2]; >>> subFields[0] = 0; subFields[1] =1 ; >>> ierr = DMCreateSubDM(dm, numSubFields, >>> subFields, &subIS, &subdm);CHKERRQ(ierr); >>> ierr = DMGetGlobalVector(dm, &X);CHKERRQ(ierr); >>> ierr = >>> VecGetSubVector(X,subIS,&subX);CHKERRQ(ierr); >>> ierr = PetscObjectSetName((PetscObject) >>> subX, "sol.");CHKERRQ(ierr); >>> ierr = PetscViewerSetType(*viewer, >>> PETSCVIEWERVTK);CHKERRQ(ierr); >>> ierr = PetscViewerPushFormat(*viewer, >>> PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); >>> ierr = PetscViewerFileSetName(*viewer, >>> "subsol.vtu");CHKERRQ(ierr); >>> ierr = VecView(subX, viewer);CHKERRQ(ierr); >>> ierr = >>> PetscViewerDestroy(&viewer);CHKERRQ(ierr); >>> ierr = VecRestoreSubVector(X, subIS, >>> &subX);CHKERRQ(ierr); >>> DMDestroy(&subdm); >>> ierr = DMRestoreGlobalVector(dm, >>> &X);CHKERRQ(ierr); >>> >>> There are three fields in dm, and I want to obtain >>> the vector of the two of them. But, I can not >>> get the output file ?subsol.vtu?. Can you help me >>> with the code? >>> >>> Thanks >>> leejearl >>> >>> On 2016?11?06? 12:21, Barry Smith wrote: >>> >>> On Nov 5, 2016, at 8:36 PM, leejearl >>> > >>> wrote: >>> >>> Hi Sander: >>> Thank you for your advices, and it >>> works. But it is only available in th local >>> vector. >>> >>> This should work on the global vector. Please >>> send the full output of the error messages when >>> used with a global vector. >>> >>> Barry >>> >>> Is there any methods to reach this purposes >>> in the global vector? >>> Thanks >>> leejearl >>> On 2016?11?05? 19:29, Sander Arens wrote: >>> >>> You can first obtain an IS with >>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMCreateSubDM.html >>> >>> and with that you can obtain a subvector >>> with >>> http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Vec/VecGetSubVector.html >>> >>> which you can then view the usual way. >>> >>> Thanks, >>> Sander >>> >>> On 5 November 2016 at 12:17, leejearl >>> >> > wrote: >>> Hi, all: >>> >>> I meet a problems which I can not >>> overcome. The programe is like the code in >>> >>> "http://www.mcs.anl.gov/petsc/petsc-current/src/dm/impls/plex/examples/tutorials/ex1.c.html >>> ". >>> >>> The code create a section which has >>> three fields: u,v,w. How can I output >>> the fields u and v without together with w? >>> >>> Thanks! >>> >>> >>> leejearl >>> >>> >>> >>> >>> >>> >>> >> >> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to >> which their experiments lead. >> -- Norbert Wiener > > -- > ?? > ??????????????? > Phone:17792092487 > QQ: 188524324 > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -- ?? ??????????????? Phone: 17792092487 QQ: 188524324 -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Thu Nov 10 09:38:57 2016 From: jed at jedbrown.org (Jed Brown) Date: Thu, 10 Nov 2016 08:38:57 -0700 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: Message-ID: <87inrve44u.fsf@jedbrown.org> Matthew Knepley writes: > On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej wrote: > >> I'm getting the correct solution now, thanks! There are still a few >> open questions. >> >> 1. The mass term is necessary _and_ using the u_tShift value if i >> provide the jacobian. After reading the manual countless times, i >> still don't get what the u_tShift value tells me in this context. Are >> there any resources which you could point me to? >> > > The manual is always a lagging resource because we are trying things > out. This has been explained in the manual similarly to your email for several years. If anyone has a suggestion for how to make it better, we'd like to hear. The typical syndrome is that once you learn it, the description suddenly makes sense and you wonder why you were ever confused. It takes feedback from people just learning the material to make the explanation more clear. > I learned about this by reading examples. The idea is the > following. We have an implicit definition of our timestepping method > > F(u, grad u, u_t, x, t) = 0 It doesn't make sense to write grad u as a separate argument here. Also, is `x` meant to be coordinates or some other statically prescribed data? It can't be actively changing if you expect a generic TS to be convergent. (It's not an argument to the function.) So really, you have: F(u, u_t, t) = 0 > which is not unlike a Lagrangian description of a mechanical system. The > Jacobian can be considered > formally to have two parts, > > dF/du and dF/du_t > > just as in the Lagrangian setting. The u_tShift variable is the multiplier > for dF/du_t so that you actually > form > > dF/du + u_tShift dF/du_t We're taking the total derivative of F with respect to u where u_t has been _defined_ as an affine function of u, i.e., shift*u+affine. u_tShift comes from the chain rule. When computing the total derivative, we have dF/du + dF/du_t du_t/du. >> 2. Is DMProjectFunction necessary _before_ TSSolve? This acts like an >> initial condition if i'm not mistaken. >> > > Yes, this is the initial condition. > > >> 3. A more in depth question i guess. Where is the "mass action" >> formed? As i could see by stepping through the debugger, there is just >> a formed action for the residual equation. It seems way over my >> understanding how this formulation works out. I'd also appreciate >> resources on that if thats possible. >> > > Jed is the only one who understands this completely. That's a stretch -- several other people have developed sophisticated TS implementations. > However, I guess by "mass action" you mean the dF/du_t term. In the > explicit methods, you just have u_t + ..., so > > dF/du_t = M > > for finite element methods. So you are putting that there in > FormIJacobian(). In the simplest > case of backwards Euler then u_tShift would be 1/dt. Specifically, for implicit methods, and many semi-implicit methods, we don't need M separate. -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 800 bytes Desc: not available URL: From knepley at gmail.com Thu Nov 10 09:45:33 2016 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 10 Nov 2016 09:45:33 -0600 Subject: [petsc-users] PetscFE and TS In-Reply-To: <87inrve44u.fsf@jedbrown.org> References: <87inrve44u.fsf@jedbrown.org> Message-ID: On Thu, Nov 10, 2016 at 9:38 AM, Jed Brown wrote: > Matthew Knepley writes: > > > On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej > wrote: > > > >> I'm getting the correct solution now, thanks! There are still a few > >> open questions. > >> > >> 1. The mass term is necessary _and_ using the u_tShift value if i > >> provide the jacobian. After reading the manual countless times, i > >> still don't get what the u_tShift value tells me in this context. Are > >> there any resources which you could point me to? > >> > > > > The manual is always a lagging resource because we are trying things > > out. > > This has been explained in the manual similarly to your email for > several years. If anyone has a suggestion for how to make it better, > we'd like to hear. The typical syndrome is that once you learn it, the > description suddenly makes sense and you wonder why you were ever > confused. It takes feedback from people just learning the material to > make the explanation more clear. > > > I learned about this by reading examples. The idea is the > > following. We have an implicit definition of our timestepping method > > > > F(u, grad u, u_t, x, t) = 0 > > It doesn't make sense to write grad u as a separate argument here. > Sorry, that is just how I think of it, not the actual interface. > Also, is `x` meant to be coordinates or some other statically prescribed > Coordinates, as distinct from u. Again this is my fault. > data? It can't be actively changing if you expect a generic TS to be > convergent. (It's not an argument to the function.) So really, you > have: > > F(u, u_t, t) = 0 > > > which is not unlike a Lagrangian description of a mechanical system. The > > Jacobian can be considered > > formally to have two parts, > > > > dF/du and dF/du_t > > > > just as in the Lagrangian setting. The u_tShift variable is the > multiplier > > for dF/du_t so that you actually > > form > > > > dF/du + u_tShift dF/du_t > > We're taking the total derivative of F with respect to u where u_t has > been _defined_ as an affine function of u, i.e., shift*u+affine. > u_tShift comes from the chain rule. When computing the total > derivative, we have > > dF/du + dF/du_t du_t/du. > >> 2. Is DMProjectFunction necessary _before_ TSSolve? This acts like an > >> initial condition if i'm not mistaken. > >> > > > > Yes, this is the initial condition. > > > > > >> 3. A more in depth question i guess. Where is the "mass action" > >> formed? As i could see by stepping through the debugger, there is just > >> a formed action for the residual equation. It seems way over my > >> understanding how this formulation works out. I'd also appreciate > >> resources on that if thats possible. > >> > > > > Jed is the only one who understands this completely. > > That's a stretch -- several other people have developed sophisticated TS > implementations. Matt does not understand this completely. > > > However, I guess by "mass action" you mean the dF/du_t term. In the > > explicit methods, you just have u_t + ..., so > > > > dF/du_t = M > > > > for finite element methods. So you are putting that there in > > FormIJacobian(). In the simplest > > case of backwards Euler then u_tShift would be 1/dt. > > Specifically, for implicit methods, and many semi-implicit methods, we > don't need M separate. > Yes. Matt -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From sb020287 at gmail.com Thu Nov 10 10:43:03 2016 From: sb020287 at gmail.com (Somdeb Bandopadhyay) Date: Fri, 11 Nov 2016 00:43:03 +0800 Subject: [petsc-users] VecAXPY of DMDA vectors Message-ID: Hi, is there any way to use VecAXPY type functions directly on a dmda vector w/o copying? or we can only use it on local vecs? -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Thu Nov 10 10:54:02 2016 From: jed at jedbrown.org (Jed Brown) Date: Thu, 10 Nov 2016 09:54:02 -0700 Subject: [petsc-users] VecAXPY of DMDA vectors In-Reply-To: References: Message-ID: <87d1i3e0np.fsf@jedbrown.org> Somdeb Bandopadhyay writes: > Hi, is there any way to use VecAXPY type functions directly on a dmda > vector w/o copying? or we can only use it on local vecs? Huh? VecAXPY takes Vec arguments. It doesn't matter where your Vec comes from. -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 800 bytes Desc: not available URL: From tisaac at uchicago.edu Thu Nov 10 14:21:49 2016 From: tisaac at uchicago.edu (Tobin Isaac) Date: Thu, 10 Nov 2016 14:21:49 -0600 Subject: [petsc-users] SAWs does not work in parallel on my laptop Message-ID: <20161110202137.GA18872@uchicago.edu> I tried running the first example with SAWs, and it works with one process, but not in parallel. This is a minimal install using the downloaded mpich version. Any suggestions? /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o ex1.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include `pwd`/ex1.c /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -o ex1 ex1.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lpetsc -llapack -lblas -lX11 -lssl -lcrypto -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl /bin/rm -f -f ex1.o [0] PetscGetHostName(): Rejecting domainname, likely is NIS alembic.(none) [0] PetscGetFileStat(): System call stat() succeeded on file /home/tisaac/Projects/petsc/share/petsc/saws/js [0] PetscTestOwnership(): System call access() succeeded on file /home/tisaac/Projects/petsc/share/petsc/saws/js [0] PetscInitialize(): PETSc successfully started: number of processors = 2 [0] PetscGetHostName(): Rejecting domainname, likely is NIS alembic.(none) [0] PetscInitialize(): Running on machine: alembic [1]PETSC ERROR: #1 PetscLogInitialize() line 229 in /home/tisaac/Projects/petsc/src/sys/logging/plog.c [1]PETSC ERROR: #2 PetscInitialize() line 891 in /home/tisaac/Projects/petsc/src/sys/objects/pinit.c [0] PetscSAWsBlock(): Blocking on SAWs =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 21665 RUNNING AT alembic = EXIT CODE: 14 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== -------------- next part -------------- Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Thu Nov 10 13:56:54 2016 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --download-saws --download-mpich PETSC_ARCH=arch-linux2-c-debug-mpich Working directory: /home/tisaac/Projects/petsc Machine platform: ('Linux', 'alembic', '3.2.0-115-generic', '#157-Ubuntu SMP Tue Oct 25 16:32:19 UTC 2016', 'x86_64', 'x86_64') Python version: 2.7.3 (default, Jun 22 2015, 19:33:41) [GCC 4.6.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/tisaac/Projects/petsc/config/BuildSystem/config/framework.py:840) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:840) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/lib/mutt/gdb...not found Checking for program /home/tisaac/.local/bin/gdb...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/gdb...not found Checking for program /home/tisaac/.bin/gdb...not found Checking for program /usr/lib/lightdm/lightdm/gdb...not found Checking for program /usr/local/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/lib/mutt/dbx...not found Checking for program /home/tisaac/.local/bin/dbx...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/dbx...not found Checking for program /home/tisaac/.bin/dbx...not found Checking for program /usr/lib/lightdm/lightdm/dbx...not found Checking for program /usr/local/sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /home/tisaac/.bin/dbx...not found Checking for program /home/tisaac/dbx...not found Checking for program /usr/lib/mutt/xdb...not found Checking for program /home/tisaac/.local/bin/xdb...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/xdb...not found Checking for program /home/tisaac/.bin/xdb...not found Checking for program /usr/lib/lightdm/lightdm/xdb...not found Checking for program /usr/local/sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /home/tisaac/.bin/xdb...not found Checking for program /home/tisaac/xdb...not found Checking for program /usr/lib/mutt/dsymutil...not found Checking for program /home/tisaac/.local/bin/dsymutil...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/dsymutil...not found Checking for program /home/tisaac/.bin/dsymutil...not found Checking for program /usr/lib/lightdm/lightdm/dsymutil...not found Checking for program /usr/local/sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /home/tisaac/.bin/dsymutil...not found Checking for program /home/tisaac/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/home/tisaac/Projects/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/lib/mutt/git...not found Checking for program /home/tisaac/.local/bin/git...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/git...not found Checking for program /home/tisaac/.bin/git...not found Checking for program /usr/lib/lightdm/lightdm/git...not found Checking for program /usr/local/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/sbin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.10.2 ================================================================================ TEST configureMercurial from config.sourceControl(/home/tisaac/Projects/petsc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/lib/mutt/hg...not found Checking for program /home/tisaac/.local/bin/hg...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/hg...not found Checking for program /home/tisaac/.bin/hg...not found Checking for program /usr/lib/lightdm/lightdm/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 2.0.2) ================================================================================ TEST configureCLanguage from PETSc.options.languages(/home/tisaac/Projects/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/home/tisaac/Projects/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 7 #define PETSC_VERSION_SUBMINOR 4 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/tisaac/Projects/petsc" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/home/tisaac/Projects/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "/home/tisaac/datafiles" ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/home/tisaac/Projects/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) bin/maint exists. This appears to be a repository clone .git directory exists Executing: cd /home/tisaac/Projects/petsc && git describe stdout: v3.7.4-1922-geb30558 Executing: cd /home/tisaac/Projects/petsc && git log -1 --pretty=format:%H stdout: eb305583891044e39bdd576a7266be98a7cf3a54 Executing: cd /home/tisaac/Projects/petsc && git log -1 --pretty=format:%ci stdout: 2016-11-10 08:59:24 -0600 Executing: cd /home/tisaac/Projects/petsc && git branch stdout: maint mark/feature-picell mark/feature-picell-diverged mark/feature-picell-quad mark/ksp-ex56 mark/ksp-newex56 * master next next-merge-tisaac/dmforest tisaac/buildsystem-feature-parallel tisaac/buildsystem-feature-subst-link-flags tisaac/config-fix-petsc-py tisaac/dm-project-function-label tisaac/dmplex-feature-ex3-high-order tisaac/dmplex-feature-ex6-symmetry tisaac/dmplex-feature-quadrature-in-geom tisaac/dmplex-use-symmetry tisaac/dt-feature-vector-quadrature tisaac/dualspace-feature-get-symmetries tisaac/dualspace-feature-symmetry tisaac/dualspace-feature-symmetry-old tisaac/feature-add-petscfe-tensor tisaac/feature-dm-reembed tisaac/feature-parallel-config-context-mask tisaac/feature-picell tisaac/feature-plex-example-nonconforming tisaac/feature-typed-orientation tisaac/fix-gamg-set-coordinates tisaac/fix-tests tisaac/master-merge-mark-snesex56 tisaac/petscfe-matching-quadrature-order-back tisaac/plex-descriptive-debug tisaac/plex-feature-tree-fv-no-redistribute tisaac/plex-feature-vec-get-star tisaac/plex-fv-without-ghosts tisaac/thplex-makefile-examples Defined "VERSION_GIT" to ""v3.7.4-1922-geb30558"" Defined "VERSION_DATE_GIT" to ""2016-11-10 08:59:24 -0600"" Defined "VERSION_BRANCH_GIT" to ""master"" ================================================================================ TEST configureArchitecture from PETSc.options.arch(/home/tisaac/Projects/petsc/config/PETSc/options/arch.py:25) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-linux2-c-debug-mpich"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/home/tisaac/Projects/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/home/tisaac/Projects/petsc/config/PETSc/options/installDir.py:74) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:74) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/home/tisaac/Projects/petsc/config/PETSc/options/installDir.py:67) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:67) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/home/tisaac/Projects/petsc/config/PETSc/options/installDir.py:51) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:51) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/home/tisaac/Projects/petsc/config/PETSc/options/installDir.py:87) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:87) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/tisaac/Projects/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/tisaac/Projects/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1600) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1600) **** printenv **** TODO_FILE=/home/tisaac/todo/todo.txt MAKEN=8 WORK=/home/tisaac/work GNOME_DESKTOP_SESSION_ID=this-is-deprecated BROWSER=firefox XDG_CURRENT_DESKTOP=GNOME DONE_FILE=/home/tisaac/todo/done.txt LOGNAME=tisaac USER=tisaac PATH=/usr/lib/mutt:/home/tisaac/.local/bin:/usr/local/texlive/2015/bin/x86_64-linux:/home/tisaac/.bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/tisaac/.bin CCGOLOCAL=/home/tisaac/ccgo GNOME_KEYRING_CONTROL=/tmp/keyring-984kz1 DISPLAY=:0 vcs_info_msg_0_=%{%}?%{%}%{%}?%{(B%}%{%}master= SSH_AGENT_PID=2524 LANG=en_US.UTF-8 MPICH_DBG_FILENAME=dbg-%w-%d.log TERM=xterm-256color SHELL=/usr/bin/zsh XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0 XDG_SESSION_COOKIE=0bb413799794f59deebb04d900000003-1478788580.738106-107490020 SESSION_MANAGER=local/alembic:@/tmp/.ICE-unix/2478,unix/alembic:/tmp/.ICE-unix/2478 XDG_DATA_DIRS=/usr/share/gnome-xmonad:/usr/share/gnome:/usr/local/share/:/usr/share/ MANDATORY_PATH=/usr/share/gconf/gnome-xmonad.mandatory.path PETSC_ARCH=arch-linux2-c-debug-mpich MPICH_DBG_LEVEL=verbose T8_ARCH=arch-debug WINDOWID=48235846 PETSC_DIR=/home/tisaac/Projects/petsc EDITOR=vim DESKTOP_AUTOSTART_ID=1083d73533c5ccf823147878858097140900000024780037 PETSC_OPTIONS=-malloc_test OMPI_CC=clang GPG_AGENT_INFO=/tmp/keyring-984kz1/gpg:0:1 HOME=/home/tisaac TODO_ACTIONS_DIR=/home/tisaac/.todo.actions.d REPORT_FILE=/home/tisaac/todo/report.txt TODOTXT_DEFAULT_ACTION=ls TODO_DIR=/home/tisaac/todo EXEC=/home/tisaac/exec PYTHONPATH=/home/tisaac/.local/lib/python2.7/site-packages SSH_AUTH_SOCK=/tmp/keyring-984kz1/ssh FULLHOST=alembic XENVIRONMENT=/home/tisaac/.Xresources GDMSESSION=gnome-xmonad BUILD=/home/tisaac/build GNOME_KEYRING_PID=2467 XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0 COLORFGBG=default;default;0 DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-Pwy2k05FP3,guid=0f6504b3754592c949b131dc0000001c _=/home/tisaac/Projects/petsc/./reconfigure-arch-linux2-c-debug-mpich.py XAUTHORITY=/home/tisaac/.Xauthority CCGOREPO=https://svn.ices.utexas.edu/repos/ccgo DESKTOP_SESSION=gnome-xmonad GTAGSLIBPATH=/home/tisaac/Projects/petsc XDG_CONFIG_DIRS=/etc/xdg/xdg-gnome-xmonad:/etc/xdg DEFAULTS_PATH=/usr/share/gconf/gnome-xmonad.default.path UBUNTU_MENUPROXY=libappmenu.so SCRATCH=/home/tisaac/scratch OLDPWD=/home/tisaac/Projects/petsc/src/sys/examples/tutorials MPICH_DBG_CLASS=all SHLVL=1 PWD=/home/tisaac/Projects/petsc COLORTERM=rxvt-xpm vcs_info_msg_1_= OMPI_CXX=clang++ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1607) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1607) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1637) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1637) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1572) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1572) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1591) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1591) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:417) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:417) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:427) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:427) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:553) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:553) Locate a functional C compiler Checking for program /usr/lib/mutt/gcc...not found Checking for program /home/tisaac/.local/bin/gcc...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/gcc...not found Checking for program /home/tisaac/.bin/gcc...not found Checking for program /usr/lib/lightdm/lightdm/gcc...not found Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W All intermediate test results are stored in /tmp/petsc-W4It8W/config.setCompilers Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:586) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:586) Locate a functional C preprocessor Checking for program /usr/lib/mutt/gcc...not found Checking for program /home/tisaac/.local/bin/gcc...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/gcc...not found Checking for program /home/tisaac/.bin/gcc...not found Checking for program /usr/lib/lightdm/lightdm/gcc...not found Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Pushing language C Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:627) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:627) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:667) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:667) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:779) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:779) Locate a functional Cxx compiler Checking for program /usr/lib/mutt/g++...not found Checking for program /home/tisaac/.local/bin/g++...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/g++...not found Checking for program /home/tisaac/.bin/g++...not found Checking for program /usr/lib/lightdm/lightdm/g++...not found Checking for program /usr/local/sbin/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /usr/sbin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXX" to "g++" Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:817) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:817) Locate a functional Cxx preprocessor Checking for program /usr/lib/mutt/g++...not found Checking for program /home/tisaac/.local/bin/g++...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/g++...not found Checking for program /home/tisaac/.bin/g++...not found Checking for program /usr/lib/lightdm/lightdm/g++...not found Checking for program /usr/local/sbin/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /usr/sbin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXXCPP" to "g++ -E" Pushing language Cxx Executing: g++ -E -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-W4It8W/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-W4It8W/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.6/cstdlib" 1 3 # 41 "/usr/include/c++/4.6/cstdlib" 3 # 42 "/usr/include/c++/4.6/cstdlib" 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 1 3 # 153 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 393 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 1 3 # 40 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 41 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 2 3 # 394 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/cpu_defines.h" 1 3 # 397 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 2 3 # 44 "/usr/include/c++/4.6/cstdlib" 2 3 # 66 "/usr/include/c++/4.6/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 33 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 236 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 55 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern "C" { # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 } # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 } # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 263 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 } # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 674 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 694 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 } # 67 "/usr/include/c++/4.6/cstdlib" 2 3 # 98 "/usr/include/c++/4.6/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 158 "/usr/include/c++/4.6/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; inline long long abs(long long __x) { return __x >= 0 ? __x : -__x; } using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 193 "/usr/include/c++/4.6/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::abs; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:934) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:934) Locate a functional Fortran compiler Checking for program /usr/lib/mutt/gfortran...not found Checking for program /home/tisaac/.local/bin/gfortran...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/gfortran...not found Checking for program /home/tisaac/.bin/gfortran...not found Checking for program /usr/lib/lightdm/lightdm/gfortran...not found Checking for program /usr/local/sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FC" to "gfortran" Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:955) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:955) Make sure fortran comment "!" works Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1072) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1072) ================================================================================ TEST checkArchiver from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1171) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1171) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/lib/mutt/ar...not found Checking for program /home/tisaac/.local/bin/ar...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /home/tisaac/.bin/ar...not found Checking for program /usr/lib/lightdm/lightdm/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/lib/mutt/ranlib...not found Checking for program /home/tisaac/.local/bin/ranlib...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /home/tisaac/.bin/ranlib...not found Checking for program /usr/lib/lightdm/lightdm/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-W4It8W/config.setCompilers/libconf1.a /tmp/petsc-W4It8W/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-W4It8W/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/lib/mutt/ar...not found Checking for program /home/tisaac/.local/bin/ar...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /home/tisaac/.bin/ar...not found Checking for program /usr/lib/lightdm/lightdm/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/lib/mutt/ranlib...not found Checking for program /home/tisaac/.local/bin/ranlib...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /home/tisaac/.bin/ranlib...not found Checking for program /usr/lib/lightdm/lightdm/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-W4It8W/config.setCompilers/libconf1.a /tmp/petsc-W4It8W/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-W4It8W/config.setCompilers/libconf1.a Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -L/tmp/petsc-W4It8W/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1285) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1285) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker gcc using flags ['-shared'] Checking for program /usr/lib/mutt/gcc...not found Checking for program /home/tisaac/.local/bin/gcc...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/gcc...not found Checking for program /home/tisaac/.bin/gcc...not found Checking for program /usr/lib/lightdm/lightdm/gcc...not found Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Trying C compiler flag Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {fprintf(stdout,"hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /tmp/petsc-W4It8W/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o: could not read symbols: Bad value collect2: ld returned 1 exit status Rejected C compiler flag because it was not compatible with shared linker gcc using flags ['-shared'] Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {fprintf(stdout,"hello"); return 0;} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o -L/tmp/petsc-W4It8W/config.setCompilers -lconftest Using shared linker gcc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1031) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1031) Determine the PIC option for each compiler Pushing language C Trying C compiler flag Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void foo(void){fprintf(stdout,"hello"); return;} void bar(void){foo();} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Accepted C compiler flag Popping language C Pushing language Cxx Trying Cxx compiler flag Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void foo(void){fprintf(stdout,"hello"); return;} void bar(void){foo();} Pushing language C Pushing language C Popping language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /tmp/petsc-W4It8W/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o: could not read symbols: Bad value collect2: ld returned 1 exit status Rejected Cxx compiler flag because shared linker cannot handle it Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void foo(void){fprintf(stdout,"hello"); return;} void bar(void){foo();} Pushing language C Pushing language C Popping language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Trying FC compiler flag Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Pushing language C Pushing language C Popping language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /tmp/petsc-W4It8W/config.setCompilers/conftest.o: relocation R_X86_64_32 against `xx_' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o: could not read symbols: Bad value collect2: ld returned 1 exit status Rejected FC compiler flag because shared linker cannot handle it Executing: gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -fPIC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Pushing language C Pushing language C Popping language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1380) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1380) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: gcc -V Trying C linker flag -Wl,-rpath, Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wl,-rpath,/home/tisaac/Projects/petsc -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/tisaac/Projects/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: gcc -V Trying Cxx linker flag -Wl,-rpath, Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wl,-rpath,/home/tisaac/Projects/petsc /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/tisaac/Projects/petsc Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: gcc -V Trying FC linker flag -Wl,-rpath, Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wl,-rpath,/home/tisaac/Projects/petsc -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/tisaac/Projects/petsc Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1415) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1415) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1464) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1464) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-W4It8W/config.headers Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.libraries Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.libraries -fPIC /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC /tmp/petsc-W4It8W/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker gcc using flags ['-shared'] Checking for program /usr/lib/mutt/gcc...not found Checking for program /home/tisaac/.local/bin/gcc...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/gcc...not found Checking for program /home/tisaac/.bin/gcc...not found Checking for program /usr/lib/lightdm/lightdm/gcc...not found Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "DYNAMICLINKER" to "gcc" Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o -ldl Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ?printf? [enabled by default] /tmp/petsc-W4It8W/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ?printf? [enabled by default] /tmp/petsc-W4It8W/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ?printf? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-W4It8W/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.o -ldl Using dynamic linker gcc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1516) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1516) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with " -fPIC " Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "g++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "gfortran" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/home/tisaac/Projects/petsc/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/home/tisaac/Projects/petsc/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/home/tisaac/Projects/petsc/config/PETSc/options/sharedLibraries.py:99) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:99) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/home/tisaac/Projects/petsc/config/PETSc/options/sharedLibraries.py:105) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:105) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/home/tisaac/Projects/petsc/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined make macro "PETSC_INDEX_SIZE" to "32" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Trying C compiler flag -Wall Trying C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fvisibility=hidden Trying C compiler flag -g3 Trying Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g Trying FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -Wno-unused-variable Trying FC compiler flag -g Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Popping language C Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -Wall -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Popping language Cxx Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g Popping language FC Executing: gcc --version stdout: gcc (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: gcc gcc (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: g++ --version stdout: g++ (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: g++ g++ (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: gfortran GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Executing: gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING ================================================================================ TEST configureDebugging from PETSc.options.debugging(/home/tisaac/Projects/petsc/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST checkRestrict from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: gcc -V Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.compilers Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.compilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.compilers/conftest.c:5:18: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?x? /tmp/petsc-W4It8W/config.compilers/conftest.c:5:18: error: ?x? undeclared (first use in this function) /tmp/petsc-W4It8W/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.compilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.compilers/conftest.c:5:23: warning: unused variable ?x? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:321) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:321) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:332) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:332) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:168) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:168) Determines the libraries needed to link with C Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.4-1ubuntu1~12.04' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.4 (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-W4It8W/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fvisibility=hidden' '-g3' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-W4It8W/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language C compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gcc compilers: Unknown arg COLLECT_GCC=gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.4 compilers: Unknown arg 4.6.4 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.4-1ubuntu1~12.04) compilers: Unknown arg 4.6.4-1ubuntu1~12.04) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-ldl', '-lgcc_s'] compilers: Check that C libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1377) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1377) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -MMD -MP /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC -MMD -MP /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g -MMD -MP /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Popping language FC ================================================================================ TEST checkC99Flag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1423) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1423) Check for -std=c99 or equivalent flag Accepted C99 compile flag: -std=c99 Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:5: error: ?for? loop initial declarations are only allowed in C99 mode /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:5: note: use option -std=c99 or -std=gnu99 to compile your code /tmp/petsc-W4It8W/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-W4It8W/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:5: error: ?for? loop initial declarations are only allowed in C99 mode /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:5: note: use option -std=c99 or -std=gnu99 to compile your code /tmp/petsc-W4It8W/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] PETSc Error: No output file produced Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -std=c99 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Popping language C ================================================================================ TEST checkRestrict from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: gcc -V Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.compilers/conftest.cc: In function ?int main()?: /tmp/petsc-W4It8W/config.compilers/conftest.cc:5:18: error: expected initializer before ?x? Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: g++ -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.compilers/conftest.cc: In function ?int main()?: /tmp/petsc-W4It8W/config.compilers/conftest.cc:5:23: warning: unused variable ?x? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:372) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:372) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:345) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:345) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:430) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:430) Determines the libraries needed to link with C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.4-1ubuntu1~12.04' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.4 (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-W4It8W/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fvisibility=hidden' '-g' '-L/usr/lib/gcc/x86_64-linux-gnu/4.6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-W4It8W/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. /tmp/petsc-W4It8W/config.compilers/conftest.o -rpath /usr/lib/gcc/x86_64-linux-gnu/4.6 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language Cxx compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=g++ compilers: Unknown arg COLLECT_GCC=g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.4 compilers: Unknown arg 4.6.4 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.4-1ubuntu1~12.04) compilers: Unknown arg 4.6.4-1ubuntu1~12.04) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:387) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:387) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/include/c++/4.6/random:35:0, from /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:4: /usr/include/c++/4.6/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:11: warning: identifier ?constexpr? will become a keyword in C++0x [-Wc++0x-compat] /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:32: error: ?constexpr? does not name a type /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:32: note: C++0x ?constexpr? only available with -std=c++0x or -std=gnu++0x /tmp/petsc-W4It8W/config.setCompilers/conftest.cc: In function ?int main()?: /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:10:11: error: ?random_device? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:10:30: error: expected ?;? before ?rd? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:11:11: error: ?mt19937? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:11:24: error: expected ?;? before ?mt? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:11: error: ?normal_distribution? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ?double? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:36: error: expected ?;? before ?double? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:33: error: ?mt? was not declared in this scope /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:35: error: ?dist? was not declared in this scope /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:24: warning: unused variable ?x? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.6/random:35:0, from /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:4: /usr/include/c++/4.6/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:11: warning: identifier ?constexpr? will become a keyword in C++0x [-Wc++0x-compat] /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:32: error: ?constexpr? does not name a type /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:32: note: C++0x ?constexpr? only available with -std=c++0x or -std=gnu++0x /tmp/petsc-W4It8W/config.setCompilers/conftest.cc: In function ?int main()?: /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:10:11: error: ?random_device? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:10:30: error: expected ?;? before ?rd? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:11:11: error: ?mt19937? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:11:24: error: expected ?;? before ?mt? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:11: error: ?normal_distribution? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ?double? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:36: error: expected ?;? before ?double? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:33: error: ?mt? was not declared in this scope /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:35: error: ?dist? was not declared in this scope /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:24: warning: unused variable ?x? [-Wunused-variable] PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:593) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:593) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:652) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:652) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:689) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:689) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-W4It8W/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: ld returned 1 exit status Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:699) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:699) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:723) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:723) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g -DTesting /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC ================================================================================ TEST checkFortranLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:743) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:743) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: gfortran -V Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: Driving: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -l gfortran -l m -shared-libgcc -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec Using built-in specs. Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec rename spec lib to liborig COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.4-1ubuntu1~12.04' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.4 (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-W4It8W/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-Wno-unused-variable' '-g' '-L/usr/lib/gcc/x86_64-linux-gnu/4.6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-W4It8W/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. /tmp/petsc-W4It8W/config.compilers/conftest.o -rpath /usr/lib/gcc/x86_64-linux-gnu/4.6 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language FC compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -Wno-unused-variable compilers: Unknown arg -Wno-unused-variable compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Unknown arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.4 compilers: Unknown arg 4.6.4 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.4-1ubuntu1~12.04) compilers: Unknown arg 4.6.4-1ubuntu1~12.04) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX compilers: Fortran libraries can be used from C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: g++ -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1097) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1097) Check that Fortran can be linked against C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/cxxobj.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s /tmp/petsc-W4It8W/config.compilers/confc.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1132) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1132) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran90FreeForm from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1145) TESTING: checkFortran90FreeForm from config.compilers(config/BuildSystem/config/compilers.py:1145) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1159) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1159) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1179) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1179) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/fooobj.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.compilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.compilers/conftest Executing: /tmp/petsc-W4It8W/config.compilers/conftest stdout: arrays [0x7ffe59f155b0 0x7ffe59f155b0 0x7ffe59f155b0] arrays [0x7ffe59f15560 0x7ffe59f15510 0x7ffe59f15560] pointers do not match! [0xffffffff 0x7ffe59f155b0] [0x2] ERROR while running executable: Could not execute "/tmp/petsc-W4It8W/config.compilers/conftest": arrays [0x7ffe59f155b0 0x7ffe59f155b0 0x7ffe59f155b0] arrays [0x7ffe59f15560 0x7ffe59f15510 0x7ffe59f15560] pointers do not match! [0xffffffff 0x7ffe59f155b0] [0x2] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1266) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1266) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.compilers/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.compilers/conftest -I/tmp/petsc-W4It8W/config.compilers/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/configtest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1332) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1332) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -module /tmp/petsc-W4It8W/config.compilers/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ?-module? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -module:/tmp/petsc-W4It8W/config.compilers/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ?-module:/tmp/petsc-W4It8W/config.compilers/confdir? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fmod=/tmp/petsc-W4It8W/config.compilers/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ?-fmod=/tmp/petsc-W4It8W/config.compilers/confdir? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: gfortran -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -J/tmp/petsc-W4It8W/config.compilers/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1491) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1491) ================================================================================ TEST configureClosure from config.utilities.closure(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.utilities.closure Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.closure/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.utilities.closure/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.utilities.closure/conftest.c:6:6: error: expected identifier or ?(? before ?^? token Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/home/tisaac/Projects/petsc/config/PETSc/options/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.options.fortranCPP(config/PETSc/options/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined "USE_FORTRAN_INTERFACES" to "1" ================================================================================ TEST checkStdC from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: gcc -c -o /tmp/petsc-W4It8W/config.headers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Executing: gcc -c -o /tmp/petsc-W4It8W/config.headers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.headers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.headers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.headers/conftest Executing: /tmp/petsc-W4It8W/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 5 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/stat.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 105 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 long int __unused[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 108 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 211 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int stat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 240 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int fstatat (int __fd, __const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 265 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int lstat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 286 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int chmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int fchmodat (int __fd, __const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__ , __leaf__)); # 323 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int mkdir (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, __const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, __const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, __const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, __const char *__path, __const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, __const struct timespec __times[2]) __attribute__ ((__nothrow__ , __leaf__)); # 401 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, __const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))); # 444 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __xmknod (int __ver, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 5))); # 536 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 6 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: gcc -c -o /tmp/petsc-W4It8W/config.headers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 28 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 57 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 191 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.headers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 28 "/usr/include/math.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_val.h" 1 3 4 # 35 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_valf.h" 1 3 4 # 37 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_vall.h" 1 3 4 # 38 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/inf.h" 1 3 4 # 41 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/nan.h" 1 3 4 # 44 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 2 3 4 typedef float float_t; typedef double double_t; # 48 "/usr/include/math.h" 2 3 4 # 71 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 128 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nan (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nan (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); # 72 "/usr/include/math.h" 2 3 4 # 94 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 128 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nanf (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nanf (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); # 95 "/usr/include/math.h" 2 3 4 # 146 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 128 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nanl (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nanl (__const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); # 147 "/usr/include/math.h" 2 3 4 # 162 "/usr/include/math.h" 3 4 extern int signgam; # 203 "/usr/include/math.h" 3 4 enum { FP_NAN, FP_INFINITE, FP_ZERO, FP_SUBNORMAL, FP_NORMAL }; # 296 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 321 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 483 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATH_H" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.headers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t process_vm_readv (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t process_vm_writev (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 177 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 178 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 193 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 280 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 310 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 337 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 383 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 384 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 417 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); extern int sendmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags); # 41 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 129 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 214 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 254 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 24 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 150 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 26 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 30 "/usr/include/stdio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 35 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 37 "/usr/include/stdio.h" 2 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 75 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 32 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 83 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 53 "/usr/include/_G_config.h" 3 4 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 33 "/usr/include/libio.h" 2 3 4 # 53 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 54 "/usr/include/libio.h" 2 3 4 # 172 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 182 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 205 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 273 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 321 "/usr/include/libio.h" 3 4 __off64_t _offset; # 330 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 366 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 418 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 462 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 492 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 76 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 91 "/usr/include/stdio.h" 3 4 typedef __off_t off_t; # 103 "/usr/include/stdio.h" 3 4 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 165 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdio_lim.h" 1 3 4 # 166 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) __attribute__ ((__nothrow__ , __leaf__)); extern int rename (__const char *__old, __const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern FILE *tmpfile (void) ; # 210 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; # 228 "/usr/include/stdio.h" 3 4 extern char *tempnam (__const char *__dir, __const char *__pfx) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 253 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 267 "/usr/include/stdio.h" 3 4 extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 296 "/usr/include/stdio.h" 3 4 # 307 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, __const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; # 320 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 418 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__ , __leaf__)); # 449 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (__const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__ , __leaf__)) ; # 469 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 500 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 528 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 556 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 567 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 600 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; # 662 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 734 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 770 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 789 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 812 "/usr/include/stdio.h" 3 4 # 821 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void perror (__const char *__s); # 1 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern __const char *__const sys_errlist[]; # 851 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; # 870 "/usr/include/stdio.h" 3 4 extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 910 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); # 940 "/usr/include/stdio.h" 3 4 # 27 "/usr/include/malloc.h" 2 3 4 # 58 "/usr/include/malloc.h" 3 4 extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void * pvalloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__ , __leaf__)); # 144 "/usr/include/malloc.h" 3 4 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__ , __leaf__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void malloc_stats (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_info (int __options, FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern void *malloc_get_state (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void (*__volatile __malloc_initialize_hook) (void) __attribute__ ((__deprecated__)); extern void (*__volatile __free_hook) (void *__ptr, __const void *) __attribute__ ((__deprecated__)); extern void *(*__volatile __malloc_hook) (size_t __size, __const void *) __attribute__ ((__deprecated__)); extern void *(*__volatile __realloc_hook) (void *__ptr, size_t __size, __const void *) __attribute__ ((__deprecated__)); extern void *(*__volatile __memalign_hook) (size_t __alignment, size_t __size, __const void *) __attribute__ ((__deprecated__)); extern void (*__volatile __after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 28 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/strings.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/strings.h" 2 3 4 extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); # 74 "/usr/include/strings.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 102 "/usr/include/strings.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((const)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 126 "/usr/include/strings.h" 2 3 4 extern int strcasecmp_l (__const char *__s1, __const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (__const char *__s1, __const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/inttypes.h" 1 3 4 # 26 "/usr/include/inttypes.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/inttypes.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 2 3 4 # 29 "/usr/include/inttypes.h" 2 3 4 typedef int __gwchar_t; # 274 "/usr/include/inttypes.h" 3 4 typedef struct { long int quot; long int rem; } imaxdiv_t; # 298 "/usr/include/inttypes.h" 3 4 extern intmax_t imaxabs (intmax_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern intmax_t strtoimax (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)); extern uintmax_t strtoumax (__const char *__restrict __nptr, char ** __restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)); extern intmax_t wcstoimax (__const __gwchar_t *__restrict __nptr, __gwchar_t **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)); extern uintmax_t wcstoumax (__const __gwchar_t *__restrict __nptr, __gwchar_t ** __restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)); # 442 "/usr/include/inttypes.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 24 "/usr/include/sched.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 74 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 97 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 120 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 203 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 12 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 26 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/wait.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 31 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 104 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 extern int __sigismember (__const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 34 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 58 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/signum.h" 1 3 4 # 59 "/usr/include/signal.h" 2 3 4 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 77 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 51 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef struct siginfo { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __clock_t si_utime; __clock_t si_stime; } _sigchld; struct { void *si_addr; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; } _sifields; } siginfo_t; # 129 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 273 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); void *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 80 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 99 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 113 "/usr/include/signal.h" 3 4 # 126 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, __const char *__s); extern void psiginfo (__const siginfo_t *__pinfo, __const char *__s); # 168 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 196 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 216 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (__const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 252 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 253 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, __const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (__const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, __const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (__const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (__const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (__const sigset_t *__restrict __set, siginfo_t *__restrict __info, __const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, __const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 310 "/usr/include/signal.h" 3 4 extern __const char *__const _sys_siglist[65]; extern __const char *__const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 334 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, __const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 2 3 4 struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 109 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { unsigned long r8; unsigned long r9; unsigned long r10; unsigned long r11; unsigned long r12; unsigned long r13; unsigned long r14; unsigned long r15; unsigned long rdi; unsigned long rsi; unsigned long rbp; unsigned long rbx; unsigned long rdx; unsigned long rax; unsigned long rcx; unsigned long rsp; unsigned long rip; unsigned long eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; unsigned long err; unsigned long trapno; unsigned long oldmask; unsigned long cr2; struct _fpstate * fpstate; unsigned long __reserved1 [8]; }; # 340 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 350 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 50 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 357 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 33 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 typedef long int greg_t; typedef greg_t gregset_t[23]; # 94 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; unsigned long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 360 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (__const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 394 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 395 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, __const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 396 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 32 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/resource.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/resource.h" 1 3 4 # 33 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 133 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 160 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 178 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 }; # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 182 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 268 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 88 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 33 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 63 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 80 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 81 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 102 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 116 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t wait (__WAIT_STATUS __stat_loc); # 139 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 # 144 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 155 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 23 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 74 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 97 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 120 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 203 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 26 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 30 "/usr/include/time.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 31 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; # 115 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 147 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 182 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 220 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 263 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 413 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 478 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 490 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 524 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 664 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 676 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 717 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 790 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (__const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 872 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 984 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1028 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1095 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1129 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); # 1143 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 26 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 31 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 32 "/usr/include/setjmp.h" 2 3 4 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); # 78 "/usr/include/setjmp.h" 3 4 extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; # 110 "/usr/include/setjmp.h" 3 4 extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 120 "/usr/include/setjmp.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/utsname.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 49 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/limits.h" 2 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 158 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 170 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 27 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 2 3 4 # 168 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 282 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 356 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 35 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 41 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 long int __unused[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 42 "/usr/include/fcntl.h" 2 3 4 # 110 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 119 "/usr/include/fcntl.h" 3 4 extern int open (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 143 "/usr/include/fcntl.h" 3 4 extern int openat (int __fd, __const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 165 "/usr/include/fcntl.h" 3 4 extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1))); # 194 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len); # 211 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len, int __advise) __attribute__ ((__nothrow__ , __leaf__)); # 233 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len); # 255 "/usr/include/fcntl.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/times.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 30 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/pwd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/pwd.h" 2 3 4 # 73 "/usr/include/pwd.h" 3 4 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); # 95 "/usr/include/pwd.h" 3 4 extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (__const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (__const char *__name); # 140 "/usr/include/pwd.h" 3 4 extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/float.h" 1 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/param.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/param.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/limits.h" 2 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 158 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 170 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/linux/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 1 3 4 # 1 "/usr/include/asm-generic/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 2 3 4 # 5 "/usr/include/linux/param.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 53 "/usr/include/x86_64-linux-gnu/sys/param.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 54 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 26 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 24 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 2 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 201 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t process_vm_readv (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t process_vm_writev (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 177 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 178 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 193 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 280 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 310 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 337 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 383 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 384 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 417 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); extern int sendmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags); # 41 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 129 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 214 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 254 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 26 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 198 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 225 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 356 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 99 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 357 "/usr/include/netinet/in.h" 2 3 4 # 365 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 377 "/usr/include/netinet/in.h" 2 3 4 # 492 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 617 "/usr/include/netinet/in.h" 3 4 # 29 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/rpc/netdb.h" 1 3 4 # 42 "/usr/include/rpc/netdb.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 43 "/usr/include/rpc/netdb.h" 2 3 4 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__ , __leaf__)); extern void endrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbyname (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbyname_r (__const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); # 34 "/usr/include/netdb.h" 2 3 4 # 43 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 3 4 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 44 "/usr/include/netdb.h" 2 3 4 # 54 "/usr/include/netdb.h" 3 4 extern int *__h_errno_location (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 93 "/usr/include/netdb.h" 3 4 extern void herror (__const char *__str) __attribute__ ((__nothrow__ , __leaf__)); extern __const char *hstrerror (int __err_num) __attribute__ ((__nothrow__ , __leaf__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (__const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (__const char *__name); # 156 "/usr/include/netdb.h" 3 4 extern struct hostent *gethostbyname2 (__const char *__name, int __af); # 168 "/usr/include/netdb.h" 3 4 extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (__const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (__const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (__const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); # 199 "/usr/include/netdb.h" 3 4 extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (__const char *__name); # 238 "/usr/include/netdb.h" 3 4 extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (__const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (__const char *__name, __const char *__proto); extern struct servent *getservbyport (int __port, __const char *__proto); # 310 "/usr/include/netdb.h" 3 4 extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (__const char *__restrict __name, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (__const char *__name); extern struct protoent *getprotobynumber (int __proto); # 376 "/usr/include/netdb.h" 3 4 extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (__const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); # 397 "/usr/include/netdb.h" 3 4 extern int setnetgrent (__const char *__netgroup); extern void endnetgrent (void); # 414 "/usr/include/netdb.h" 3 4 extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); # 425 "/usr/include/netdb.h" 3 4 extern int innetgr (__const char *__netgroup, __const char *__host, __const char *__user, __const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); # 453 "/usr/include/netdb.h" 3 4 extern int rcmd (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p); # 465 "/usr/include/netdb.h" 3 4 extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 481 "/usr/include/netdb.h" 3 4 extern int rexec (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p); # 493 "/usr/include/netdb.h" 3 4 extern int rexec_af (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 507 "/usr/include/netdb.h" 3 4 extern int ruserok (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser); # 517 "/usr/include/netdb.h" 3 4 extern int ruserok_af (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); # 530 "/usr/include/netdb.h" 3 4 extern int iruserok (uint32_t __raddr, int __suser, __const char *__remuser, __const char *__locuser); # 541 "/usr/include/netdb.h" 3 4 extern int iruserok_af (__const void *__raddr, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); # 553 "/usr/include/netdb.h" 3 4 extern int rresvport (int *__alport); # 562 "/usr/include/netdb.h" 3 4 extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 664 "/usr/include/netdb.h" 3 4 extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__ , __leaf__)); extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__ , __leaf__)); extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, int __flags); # 715 "/usr/include/netdb.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 23 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/search.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 27 "/usr/include/search.h" 2 3 4 # 45 "/usr/include/search.h" 3 4 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__ , __leaf__)); extern void remque (void *__elem) __attribute__ ((__nothrow__ , __leaf__)); typedef int (*__compar_fn_t) (__const void *, __const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; # 88 "/usr/include/search.h" 3 4 extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__ , __leaf__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__ , __leaf__)); extern void hdestroy (void) __attribute__ ((__nothrow__ , __leaf__)); # 119 "/usr/include/search.h" 3 4 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (__const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (__const void *__key, void *__const *__rootp, __compar_fn_t __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 4 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 28 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 57 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 191 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 33 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 34 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/user.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/user.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/user.h" 2 3 4 # 1 "/usr/include/unistd.h" 1 3 4 # 28 "/usr/include/unistd.h" 3 4 # 203 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 204 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 208 "/usr/include/unistd.h" 2 3 4 # 227 "/usr/include/unistd.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 228 "/usr/include/unistd.h" 2 3 4 # 256 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; # 268 "/usr/include/unistd.h" 3 4 typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 288 "/usr/include/unistd.h" 3 4 extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, __const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 335 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 354 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, __const void *__buf, size_t __n) ; # 377 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, __const void *__buf, size_t __n, __off_t __offset) ; # 418 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 433 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 445 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 470 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, __const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 512 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 526 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 544 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (__const char *__path, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (__const char *__path, char *__const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (__const char *__file, char *__const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (__const char *__file, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 599 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 611 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (__const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 647 "/usr/include/unistd.h" 3 4 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 673 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 690 "/usr/include/unistd.h" 3 4 extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 723 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)); extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)); extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)); extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)); extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)); extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)); # 779 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (__const char *__from, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, __const char *__from, int __tofd, __const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (__const char *__from, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (__const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (__const char *__from, int __tofd, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, __const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, __const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 894 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 59 "/usr/include/getopt.h" 3 4 extern char *optarg; # 73 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 152 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 895 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (__const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (__const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (__const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1))); # 980 "/usr/include/unistd.h" 3 4 extern int fsync (int __fd); # 994 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 1018 "/usr/include/unistd.h" 3 4 extern int truncate (__const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1040 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1061 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1082 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1105 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1136 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1165 "/usr/include/unistd.h" 3 4 extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 1174 "/usr/include/unistd.h" 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/user.h" 2 3 4 struct user_fpregs_struct { unsigned short int cwd; unsigned short int swd; unsigned short int ftw; unsigned short int fop; unsigned long int rip; unsigned long int rdp; unsigned int mxcsr; unsigned int mxcr_mask; unsigned int st_space[32]; unsigned int xmm_space[64]; unsigned int padding[24]; }; struct user_regs_struct { unsigned long int r15; unsigned long int r14; unsigned long int r13; unsigned long int r12; unsigned long int rbp; unsigned long int rbx; unsigned long int r11; unsigned long int r10; unsigned long int r9; unsigned long int r8; unsigned long int rax; unsigned long int rcx; unsigned long int rdx; unsigned long int rsi; unsigned long int rdi; unsigned long int orig_rax; unsigned long int rip; unsigned long int cs; unsigned long int eflags; unsigned long int rsp; unsigned long int ss; unsigned long int fs_base; unsigned long int gs_base; unsigned long int ds; unsigned long int es; unsigned long int fs; unsigned long int gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; unsigned long int u_tsize; unsigned long int u_dsize; unsigned long int u_ssize; unsigned long int start_code; unsigned long int start_stack; long int signal; int reserved; struct user_regs_struct* u_ar0; struct user_fpregs_struct* u_fpstate; unsigned long int magic; char u_comm [32]; unsigned long int u_debugreg [8]; }; # 35 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 typedef unsigned long elf_greg_t; typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 60 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; # 79 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/resource.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/resource.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 133 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 160 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 178 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 }; # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 182 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 268 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 88 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 26 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/unistd.h" 2 3 4 # 203 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 204 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 208 "/usr/include/unistd.h" 2 3 4 # 218 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 219 "/usr/include/unistd.h" 2 3 4 typedef __ssize_t ssize_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 228 "/usr/include/unistd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 256 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 288 "/usr/include/unistd.h" 3 4 extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, __const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 335 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 354 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, __const void *__buf, size_t __n) ; # 377 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, __const void *__buf, size_t __n, __off_t __offset) ; # 418 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 433 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 445 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 470 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, __const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 512 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 526 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 544 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (__const char *__path, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (__const char *__path, char *__const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (__const char *__file, char *__const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (__const char *__file, __const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 599 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 611 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (__const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 647 "/usr/include/unistd.h" 3 4 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 673 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 690 "/usr/include/unistd.h" 3 4 extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 723 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)); extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)); extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)); extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)); extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)); extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)); # 779 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (__const char *__from, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, __const char *__from, int __tofd, __const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (__const char *__from, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (__const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (__const char *__from, int __tofd, __const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, __const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, __const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 894 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 59 "/usr/include/getopt.h" 3 4 extern char *optarg; # 73 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 152 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 895 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (__const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (__const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (__const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (__const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1))); # 980 "/usr/include/unistd.h" 3 4 extern int fsync (int __fd); # 994 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 1018 "/usr/include/unistd.h" 3 4 extern int truncate (__const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1040 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1061 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1082 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1105 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1136 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1165 "/usr/include/unistd.h" 3 4 extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 1174 "/usr/include/unistd.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdint.h" 2 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 201 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t process_vm_readv (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t process_vm_writev (pid_t __pid, __const struct iovec *__lvec, unsigned long int __liovcnt, __const struct iovec *__rvec, unsigned long int __riovcnt, unsigned long int __flags) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 177 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 178 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 193 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 280 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 310 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 337 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 383 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 384 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 417 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); extern int sendmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags); # 41 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 129 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 214 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 254 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 26 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 198 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 225 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 356 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 99 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 357 "/usr/include/netinet/in.h" 2 3 4 # 365 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 377 "/usr/include/netinet/in.h" 2 3 4 # 492 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 617 "/usr/include/netinet/in.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: gcc -c -o /tmp/petsc-W4It8W/config.headers/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.utilities.cacheDetails Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-W4It8W/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST check_siginfo_t from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-W4It8W/config.types Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:13:11: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:13:1: error: unknown type name ?__int64? /tmp/petsc-W4It8W/config.types/conftest.c:13:9: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:13:8: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:13:8: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:13:7: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:13:9: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:13:7: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.types/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.types/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.types/conftest.c" # 1 "/tmp/petsc-W4It8W/config.types/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.types/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.types/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.types/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-W4It8W/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:6:17: warning: variable ?x? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:6:17: warning: variable ?x? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.types/conftest.F90 Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:30:12: warning: ?t? is used uninitialized in this function [-Wuninitialized] /tmp/petsc-W4It8W/config.types/conftest.c:46:25: warning: ?b? is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:11:3: error: unknown type name ?not? /tmp/petsc-W4It8W/config.types/conftest.c:11:11: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?endian? Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/home/tisaac/Projects/petsc/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:356) Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Popping language C Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" Popping language Cxx ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/home/tisaac/Projects/petsc/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_sin?: /tmp/petsc-W4It8W/config.libraries/conftest.c:5:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_floor?: /tmp/petsc-W4It8W/config.libraries/conftest.c:8:43: warning: variable ?y? set but not used [-Wunused-but-set-variable] /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_log10?: /tmp/petsc-W4It8W/config.libraries/conftest.c:11:43: warning: variable ?y? set but not used [-Wunused-but-set-variable] /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_pow?: /tmp/petsc-W4It8W/config.libraries/conftest.c:14:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_sin': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `sin' /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_floor': /tmp/petsc-W4It8W/config.libraries/conftest.c:8: undefined reference to `floor' /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_log10': /tmp/petsc-W4It8W/config.libraries/conftest.c:11: undefined reference to `log10' /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_pow': /tmp/petsc-W4It8W/config.libraries/conftest.c:14: undefined reference to `pow' collect2: ld returned 1 exit status Popping language C Checking for functions [sin floor log10 pow] in library ['m'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_sin?: /tmp/petsc-W4It8W/config.libraries/conftest.c:5:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_floor?: /tmp/petsc-W4It8W/config.libraries/conftest.c:8:43: warning: variable ?y? set but not used [-Wunused-but-set-variable] /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_log10?: /tmp/petsc-W4It8W/config.libraries/conftest.c:11:43: warning: variable ?y? set but not used [-Wunused-but-set-variable] /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_pow?: /tmp/petsc-W4It8W/config.libraries/conftest.c:14:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Using libm for the math library ================================================================================ TEST checkMathErf from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_erf?: /tmp/petsc-W4It8W/config.libraries/conftest.c:5:41: warning: variable ?y? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_tgamma?: /tmp/petsc-W4It8W/config.libraries/conftest.c:5:44: warning: variable ?y? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:293) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:293) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_log2?: /tmp/petsc-W4It8W/config.libraries/conftest.c:5:42: warning: variable ?y? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log2(double); static void _check_log2() { double x = 1,y; y = log2(x); ; } int main() { _check_log2();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkCompression from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:302) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:302) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_compress?: /tmp/petsc-W4It8W/config.libraries/conftest.c:5:119: warning: variable ?ret? set but not used [-Wunused-but-set-variable] /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_uncompress?: /tmp/petsc-W4It8W/config.libraries/conftest.c:8:121: warning: variable ?ret? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_compress': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `compress' /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_uncompress': /tmp/petsc-W4It8W/config.libraries/conftest.c:8: undefined reference to `uncompress' collect2: ld returned 1 exit status Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_compress?: /tmp/petsc-W4It8W/config.libraries/conftest.c:5:119: warning: variable ?ret? set but not used [-Wunused-but-set-variable] /tmp/petsc-W4It8W/config.libraries/conftest.c: In function ?_check_uncompress?: /tmp/petsc-W4It8W/config.libraries/conftest.c:8:121: warning: variable ?ret? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lz -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBZ" to "1" Popping language C Using libz for the compression library ================================================================================ TEST checkRealtime from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:323) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:323) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_clock_gettime': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `clock_gettime' collect2: ld returned 1 exit status Popping language C Checking for functions [clock_gettime] in library ['rt'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lrt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBRT" to "1" Popping language C Using librt for the realtime library ================================================================================ TEST checkDynamic from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:339) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:339) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/home/tisaac/Projects/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/home/tisaac/Projects/petsc/config/PETSc/options/libraryOptions.py:91) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:91) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_F" to "integer2" ================================================================================ TEST configureCPURelax from config.atomics(/home/tisaac/Projects/petsc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-W4It8W/config.atomics Executing: gcc -c -o /tmp/petsc-W4It8W/config.atomics/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/home/tisaac/Projects/petsc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: gcc -c -o /tmp/petsc-W4It8W/config.atomics/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: gcc -c -o /tmp/petsc-W4It8W/config.atomics/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: gcc -c -o /tmp/petsc-W4It8W/config.atomics/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST checkMemcmp from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /tmp/petsc-W4It8W/config.functions Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.functions/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.functions/conftest Executing: /tmp/petsc-W4It8W/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 12 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 12 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 26 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directorycompilation terminated.: Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" /tmp/petsc-W4It8W/config.functions/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.functions/conftest.c:17:1: warning: implicit declaration of function ?sysinfo? [-Wimplicit-function-declaration] Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ?vprintf? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ?vfprintf? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VFPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.functions/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.functions/conftest.c:6:1: warning: implicit declaration of function ?_vsnprintf? [-Wimplicit-function-declaration] Source: #include "confdefs.h" #include "conffix.h" #include int main() { _vsnprintf(0,0,0,0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:6: undefined reference to `_vsnprintf' collect2: ld returned 1 exit status Checking for functions [vsnprintf] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ?vsnprintf? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkNanosleep from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:206) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:206) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:182) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:182) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:192) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:192) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be /tmp/petsc-W4It8W/config.functions/conftest.c:6:5: warning: variable ?ierr? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:198) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:198) Checks whether the variable argument list functionality is working Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/tisaac/Projects/petsc/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _mkdir time sysctlbyname stricmp] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ?snprintf? [enabled by default] /tmp/petsc-W4It8W/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ?bzero? [enabled by default] /tmp/petsc-W4It8W/config.functions/conftest.c:36:6: warning: conflicting types for built-in function ?fork? [enabled by default] /tmp/petsc-W4It8W/config.functions/conftest.c:48:6: warning: conflicting types for built-in function ?strcasecmp? [enabled by default] /tmp/petsc-W4It8W/config.functions/conftest.c:52:6: warning: conflicting types for built-in function ?memmove? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _mkdir(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:83: undefined reference to `_sleep' /tmp/petsc-W4It8W/config.functions/conftest.c:113: undefined reference to `_getcwd' /tmp/petsc-W4It8W/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-W4It8W/config.functions/conftest.c:143: undefined reference to `_access' /tmp/petsc-W4It8W/config.functions/conftest.c:191: undefined reference to `_snprintf' /tmp/petsc-W4It8W/config.functions/conftest.c:221: undefined reference to `sbreak' /tmp/petsc-W4It8W/config.functions/conftest.c:263: undefined reference to `_set_output_format' /tmp/petsc-W4It8W/config.functions/conftest.c:269: undefined reference to `PXFGETARG' /tmp/petsc-W4It8W/config.functions/conftest.c:335: undefined reference to `_mkdir' /tmp/petsc-W4It8W/config.functions/conftest.c:347: undefined reference to `sysctlbyname' /tmp/petsc-W4It8W/config.functions/conftest.c:353: undefined reference to `stricmp' collect2: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:17:6: warning: conflicting types for built-in function ?bzero? [enabled by default] /tmp/petsc-W4It8W/config.functions/conftest.c:27:6: warning: conflicting types for built-in function ?fork? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ?strcasecmp? [enabled by default] /tmp/petsc-W4It8W/config.functions/conftest.c:23:6: warning: conflicting types for built-in function ?memmove? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: ld returned 1 exit status Checking for functions [snprintf] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ?snprintf? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: ld returned 1 exit status Checking for functions [_lseek] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: ld returned 1 exit status Checking for functions [sleep] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `_access' collect2: ld returned 1 exit status Checking for functions [lseek] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: ld returned 1 exit status Checking for functions [sbreak] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: ld returned 1 exit status Checking for functions [getcwd] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status Checking for functions [_mkdir] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: ld returned 1 exit status Checking for functions [sysctlbyname] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status Checking for functions [stricmp] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: ld returned 1 exit status ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: gfortran -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC Popping language FC Pushing language C Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C Checking for functions [get_command_argument_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_get_command_argument_': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `get_command_argument_' collect2: ld returned 1 exit status Popping language C Checking for functions [getarg_] in library [''] ['-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: gcc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_getarg_': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `getarg_' collect2: ld returned 1 exit status Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Checking for functions [ipxfargc_] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `ipxfargc_' collect2: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `f90_unix_MP_iargc' collect2: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status Checking for functions [iargc_] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.o: In function `main': /tmp/petsc-W4It8W/config.functions/conftest.c:24: undefined reference to `iargc_' collect2: ld returned 1 exit status Checking for functions [GETARG at 16] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.functions/conftest.c:13:1: error: stray ?@? in program /tmp/petsc-W4It8W/config.functions/conftest.c:13:13: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before numeric constant /tmp/petsc-W4It8W/config.functions/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.functions/conftest.c:21:27: error: missing ')' after "defined" /tmp/petsc-W4It8W/config.functions/conftest.c:21:28: error: missing binary operator before token "16" /tmp/petsc-W4It8W/config.functions/conftest.c:24:1: error: stray ?@? in program /tmp/petsc-W4It8W/config.functions/conftest.c:24:1: error: ?GETARG? undeclared (first use in this function) /tmp/petsc-W4It8W/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-W4It8W/config.functions/conftest.c:24:8: error: expected ?;? before numeric constant Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG at 16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG at 16) || defined (__stub___GETARG at 16) GETARG at 16_will_always_fail_with_ENOSYS(); #else GETARG at 16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: gcc -c -o /tmp/petsc-W4It8W/config.functions/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-W4It8W/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm Defined "HAVE__GFORTRAN_IARGC" to "1" ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directorycompilation terminated.: Checking for header: fpxcp.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directorycompilation terminated.: Checking for header: floatingpoint.h Executing: gcc -E -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2stderr: /tmp/petsc-W4It8W/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-W4It8W/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directorycompilation terminated.: ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-W4It8W/config.utilities.featureTestMacros Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMissingDefines from config.utilities.missing(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /tmp/petsc-W4It8W/config.utilities.missing Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.utilities.missing/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.utilities.missing/conftest.c:6:9: warning: unused variable ?foo? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:110) Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:135) Executing: gcc -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -fPIC /tmp/petsc-W4It8W/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-W4It8W/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.utilities.missing/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/home/tisaac/Projects/petsc/config/PETSc/options/scalarTypes.py:36) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:36) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W/PETSc.options.scalarTypes Executing: gcc -c -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o: In function `main': /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6: undefined reference to `__fpclassify' collect2: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_ISNAN" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_ISINF" to "1" Executing: gcc -c -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ?_isnan? [-Wimplicit-function-declaration] /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6:20: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o: In function `main': /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6: undefined reference to `_isnan' collect2: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ?_finite? [-Wimplicit-function-declaration] /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6:20: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.o: In function `main': /tmp/petsc-W4It8W/PETSc.options.scalarTypes/conftest.c:6: undefined reference to `_finite' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/home/tisaac/Projects/petsc/config/PETSc/options/scalarTypes.py:76) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:76) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double ================================================================================ TEST configureMkdir from config.programs(/home/tisaac/Projects/petsc/config/BuildSystem/config/programs.py:23) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:23) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/lib/mutt/mkdir...not found Checking for program /home/tisaac/.local/bin/mkdir...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/mkdir...not found Checking for program /home/tisaac/.bin/mkdir...not found Checking for program /usr/lib/lightdm/lightdm/mkdir...not found Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /sbin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/tisaac/Projects/petsc/config/BuildSystem/config/programs.py:45) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:45) Check for autoreconf Checking for program /usr/lib/mutt/autoreconf...not found Checking for program /home/tisaac/.local/bin/autoreconf...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/autoreconf...not found Checking for program /home/tisaac/.bin/autoreconf...not found Checking for program /usr/lib/lightdm/lightdm/autoreconf...not found Checking for program /usr/local/sbin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/sbin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-W4It8W/config.programs Executing: cd /tmp/petsc-W4It8W/config.programs/autoconfdir&&/usr/bin/autoreconf autoreconf test successful! Checking for program /usr/lib/mutt/libtoolize...not found Checking for program /home/tisaac/.local/bin/libtoolize...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/libtoolize...not found Checking for program /home/tisaac/.bin/libtoolize...not found Checking for program /usr/lib/lightdm/lightdm/libtoolize...not found Checking for program /usr/local/sbin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/sbin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/home/tisaac/Projects/petsc/config/BuildSystem/config/programs.py:72) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:72) Check for the programs needed to build and run PETSc Checking for program /usr/lib/mutt/sh...not found Checking for program /home/tisaac/.local/bin/sh...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/sh...not found Checking for program /home/tisaac/.bin/sh...not found Checking for program /usr/lib/lightdm/lightdm/sh...not found Checking for program /usr/local/sbin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/lib/mutt/sed...not found Checking for program /home/tisaac/.local/bin/sed...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/sed...not found Checking for program /home/tisaac/.bin/sed...not found Checking for program /usr/lib/lightdm/lightdm/sed...not found Checking for program /usr/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /sbin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-W4It8W/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /usr/lib/mutt/mv...not found Checking for program /home/tisaac/.local/bin/mv...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/mv...not found Checking for program /home/tisaac/.bin/mv...not found Checking for program /usr/lib/lightdm/lightdm/mv...not found Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/lib/mutt/cp...not found Checking for program /home/tisaac/.local/bin/cp...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/cp...not found Checking for program /home/tisaac/.bin/cp...not found Checking for program /usr/lib/lightdm/lightdm/cp...not found Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/lib/mutt/grep...not found Checking for program /home/tisaac/.local/bin/grep...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/grep...not found Checking for program /home/tisaac/.bin/grep...not found Checking for program /usr/lib/lightdm/lightdm/grep...not found Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /sbin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /usr/lib/mutt/rm...not found Checking for program /home/tisaac/.local/bin/rm...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/rm...not found Checking for program /home/tisaac/.bin/rm...not found Checking for program /usr/lib/lightdm/lightdm/rm...not found Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/lib/mutt/diff...not found Checking for program /home/tisaac/.local/bin/diff...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/diff...not found Checking for program /home/tisaac/.bin/diff...not found Checking for program /usr/lib/lightdm/lightdm/diff...not found Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-W4It8W/config.programs/diff1" "/tmp/petsc-W4It8W/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/tisaac/ps...not found Checking for program /home/tisaac/Projects/petsc/bin/win32fe/ps...not found Checking for program /usr/lib/mutt/gzip...not found Checking for program /home/tisaac/.local/bin/gzip...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/gzip...not found Checking for program /home/tisaac/.bin/gzip...not found Checking for program /usr/lib/lightdm/lightdm/gzip...not found Checking for program /usr/local/sbin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/sbin/gzip...not found Checking for program /usr/bin/gzip...not found Checking for program /sbin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMake from config.packages.make(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/make.py:82) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:82) Check for user specified make - or gmake, make Checking for program /usr/lib/mutt/gmake...not found Checking for program /home/tisaac/.local/bin/gmake...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/gmake...not found Checking for program /home/tisaac/.bin/gmake...not found Checking for program /usr/lib/lightdm/lightdm/gmake...not found Checking for program /usr/local/sbin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/sbin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /sbin/gmake...not found Checking for program /bin/gmake...not found Checking for program /usr/games/gmake...not found Checking for program /home/tisaac/.bin/gmake...not found Checking for program /home/tisaac/gmake...not found Checking for program /home/tisaac/Projects/petsc/bin/win32fe/gmake...not found Checking for program /usr/lib/mutt/make...not found Checking for program /home/tisaac/.local/bin/make...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/make...not found Checking for program /home/tisaac/.bin/make...not found Checking for program /usr/lib/lightdm/lightdm/make...not found Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Executing: /usr/bin/make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-pc-linux-gnu ================================================================================ TEST configureCheckGNUMake from config.packages.make(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/make.py:119) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:119) Setup other GNU make stuff Executing: /usr/bin/make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-pc-linux-gnu Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/make.py:157) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:157) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 4 cores: using make_np = 4 Defined make macro "MAKE_NP" to "4" Defined make macro "NPMAX" to "4" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPICH(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:692) TESTING: configureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:692) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional MPICH Executing: uname -s stdout: Linux Looking for MPICH at git.mpich, hg.mpich or a directory starting with mpich Could not locate an existing copy of MPICH: [] Downloading MPICH =============================================================================== Trying to download http://www.mpich.org/static/downloads/3.1.3/mpich-3.1.3.tar.gz for MPICH =============================================================================== Downloading http://www.mpich.org/static/downloads/3.1.3/mpich-3.1.3.tar.gz to /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/_d_mpich-3.1.3.tar.gz Extracting /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/_d_mpich-3.1.3.tar.gz Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages; chmod -R a+r mpich-3.1.3;find mpich-3.1.3 -type d -name "*" -exec chmod a+rx {} \; Looking for MPICH at git.mpich, hg.mpich or a directory starting with mpich Found a copy of MPICH in mpich-3.1.3 Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.packages.MPICH Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Executing: gfortran -v Popping language FC Removing configure arguments ['--disable-f90', '--enable-f90'] Removing configure arguments ['F90="gfortran"', 'F90FLAGS="-fPIC -ffree-line-length-0 -g"'] Have to rebuild MPICH, /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/mpich.petscconf != /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/petsc/conf/pkg.conf.mpich =============================================================================== Running configure on MPICH; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3 && ./configure --prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich MAKE=/usr/bin/make --libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib CC="gcc" CFLAGS="-fPIC -g3" AR="/usr/bin/ar" ARFLAGS="cr" CXX="g++" CXXFLAGS="-g -fPIC" F77="gfortran" FFLAGS="-fPIC -ffree-line-length-0 -g" FC="gfortran" FCFLAGS="-fPIC -ffree-line-length-0 -g" --enable-shared --with-device=ch3:sock --with-pm=hydra --enable-fast=no --enable-g=meminit stdout: Configuring MPICH version 3.1.3 with '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' Running on system: Linux alembic 3.2.0-115-generic #157-Ubuntu SMP Tue Oct 25 16:32:19 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no checking for getpagesize... yes checking for getpagesize... (cached) yes configure: RUNNING PREREQ FOR ch3:sock configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC ' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g ' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g ' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... yes checking valgrind/valgrind.h presence... yes checking for valgrind/valgrind.h... yes checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... yes checking valgrind/helgrind.h presence... yes checking for valgrind/helgrind.h... yes checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... yes checking valgrind/drd.h presence... yes checking for valgrind/drd.h... yes checking whether the valgrind headers are broken or too old... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC ' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g ' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g ' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines configure: ===== done with src/openpa configure ===== sourcing /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O0... yes checking whether C compiler option -O0 works with an invalid prototype program... yes checking whether routines compiled with -O0 can be linked with ones compiled without -O0... yes checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O0... yes checking whether routines compiled with -O0 can be linked with ones compiled without -O0... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lgfortran -lm -lquadmath checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for Fortran 2008 support... no checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler accepts option -O0... yes checking whether routines compiled with -O0 can be linked with ones compiled without -O0... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 6 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O0... yes checking whether routines compiled with -O0 can be linked with ones compiled without -O0... yes checking for perl... /usr/bin/perl checking for ar... /usr/bin/ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... yes checking for C type matching Fortran real... float checking for C type matching Fortran double... double checking for C type matching Fortran integer... int checking for values of Fortran logicals... True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for gcc __asm__ and pentium cmpxchgl instruction... no checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes checking for gcc __asm__ and IA64 xchg4 instruction... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... 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(cached) yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for qsort... yes checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking size of MPIR_Bsend_data_t... 96 checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking whether pthread_mutexattr_settype needs a declaration... no checking for thread local storage specifier... __thread checking for getpid... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking for sched_setaffinity... yes checking for sched_getaffinity... yes checking for bindprocessor... no checking for thread_policy_set... no checking whether cpu_set_t available... yes checking whether the CPU_SET and CPU_ZERO macros are defined... no configure: RUNNING CONFIGURE FOR F90 CODE checking whether ln -s works... yes checking for extension for Fortran 90 programs... f90 checking for the precision and range of reals... 6 , 37 checking for the precision and range of double precision... 15 , 307 checking for the range of integer... 9 checking for available integer kinds... 2 , 1, 4 , 2, 9 , 4, 18 , 8, checking for available integer ranges... { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... no checking uuid/uuid.h presence... no checking for uuid/uuid.h... no checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:sock checking for net/if.h... yes checking for netdb.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking for netinet/in.h... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock checking for strerror... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock/poll checking for poll... yes checking for assert.h... (cached) yes checking for errno.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for limits.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for netinet/tcp.h... (cached) yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for stdlib.h... (cached) yes checking for sys/param.h... (cached) yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for unistd.h... (cached) yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking for library containing socket... (cached) none required checking for library containing gethostbyname... (cached) none required checking whether socklen_t is defined (in sys/socket.h if present)... (cached) yes configure: RUNNING CONFIGURE FOR CH3U SOCK CODE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for time.h... (cached) yes checking for ctype.h... (cached) yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... (cached) yes checking for pid_t... (cached) yes checking for inet_pton... (cached) yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking whether we can use struct ifconf... yes configure: ===== configuring src/mpid/common/sock ===== configure: ===== done with src/mpid/common/sock configure ===== configure: ===== configuring src/mpi/romio ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3 -O0' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC -O0' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O0' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O0' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... LINUX ROMIO home directory is /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long... yes checking size of long long... 8 checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for off_t... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for mpix.h... no checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... (cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking gpfs.h usability... no checking gpfs.h presence... no checking for gpfs.h... no checking gpfs_fcntl.h usability... no checking gpfs_fcntl.h presence... no checking for gpfs_fcntl.h... no checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... 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(cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for usleep... yes checking whether usleep needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpifort setting CFLAGS to -fPIC -g3 -O0 -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3 -O0' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC -O0' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O0' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O0' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking whether /usr/bin/make supports nested variables... (cached) yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... 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(cached) yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 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(cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/src/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 20 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 16 checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32 configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/binding/fortran/use_mpi/mpif90model.h config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/include/mpichtimer.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (/usr/bin/ar) interface... ar checking for grep that handles long lines and -e... /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lpthread -lgfortran -lm -lquadmath checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g ) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/util/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands Configuration completed. =============================================================================== Running make on MPICH; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3 && /usr/bin/make clean stdout: Making clean in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' rm -f strsep rm -rf .libs _libs rm -rf src/.libs src/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making clean in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making clean in src make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' rm -rf .libs _libs test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' Making clean in test make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o test -z "sanity.log test_primitives.log test_barriers.log test_queue.log" || rm -f sanity.log test_primitives.log test_barriers.log test_queue.log test -z "sanity.trs test_primitives.trs test_barriers.trs test_queue.trs" || rm -f sanity.trs test_primitives.trs test_barriers.trs test_queue.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making clean in src/mpi/romio make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' test -z "" || rm -f rm -rf .libs _libs rm -rf adio/ad_gpfs/.libs adio/ad_gpfs/_libs rm -rf adio/ad_gpfs/bg/.libs adio/ad_gpfs/bg/_libs rm -rf adio/ad_gpfs/pe/.libs adio/ad_gpfs/pe/_libs rm -rf adio/ad_gridftp/.libs adio/ad_gridftp/_libs rm -rf adio/ad_hfs/.libs adio/ad_hfs/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pfs/.libs adio/ad_pfs/_libs rm -rf adio/ad_piofs/.libs adio/ad_piofs/_libs rm -rf adio/ad_pvfs/.libs adio/ad_pvfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_sfs/.libs adio/ad_sfs/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/ad_zoidfs/.libs adio/ad_zoidfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/.libs mpi-io/glue/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la " || rm -f libromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_gpfs/*.o rm -f adio/ad_gpfs/*.lo rm -f adio/ad_gpfs/bg/*.o rm -f adio/ad_gpfs/bg/*.lo rm -f adio/ad_gpfs/pe/*.o rm -f adio/ad_gpfs/pe/*.lo rm -f adio/ad_gridftp/*.o rm -f adio/ad_gridftp/*.lo rm -f adio/ad_hfs/*.o rm -f adio/ad_hfs/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pfs/*.o rm -f adio/ad_pfs/*.lo rm -f adio/ad_piofs/*.o rm -f adio/ad_piofs/*.lo rm -f adio/ad_pvfs/*.o rm -f adio/ad_pvfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_sfs/*.o rm -f adio/ad_sfs/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/ad_zoidfs/*.o rm -f adio/ad_zoidfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/*.o rm -f mpi-io/glue/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' Making clean in src/pm/hydra make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making clean in ../../mpl make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' rm -f strsep rm -rf .libs _libs rm -rf src/.libs src/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making clean in tools/topo/hwloc/hwloc make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in src make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making clean in include make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs rm -rf pm/pmiserv/.libs pm/pmiserv/_libs rm -rf tools/bootstrap/external/.libs tools/bootstrap/external/_libs rm -rf tools/bootstrap/persist/.libs tools/bootstrap/persist/_libs rm -rf tools/bootstrap/src/.libs tools/bootstrap/src/_libs rm -rf tools/bootstrap/utils/.libs tools/bootstrap/utils/_libs rm -rf tools/ckpoint/.libs tools/ckpoint/_libs rm -rf tools/ckpoint/blcr/.libs tools/ckpoint/blcr/_libs rm -rf tools/debugger/.libs tools/debugger/_libs rm -rf tools/demux/.libs tools/demux/_libs rm -rf tools/ftb/.libs tools/ftb/_libs rm -rf tools/topo/.libs tools/topo/_libs rm -rf tools/topo/hwloc/.libs tools/topo/hwloc/_libs rm -rf ui/utils/.libs ui/utils/_libs rm -rf utils/alloc/.libs utils/alloc/_libs rm -rf utils/args/.libs utils/args/_libs rm -rf utils/dbg/.libs utils/dbg/_libs rm -rf utils/env/.libs utils/env/_libs rm -rf utils/launch/.libs utils/launch/_libs rm -rf utils/others/.libs utils/others/_libs rm -rf utils/signals/.libs utils/signals/_libs rm -rf utils/sock/.libs utils/sock/_libs rm -rf utils/string/.libs utils/string/_libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f pm/pmiserv/*.o rm -f pm/pmiserv/*.lo rm -f tools/bootstrap/external/*.o rm -f tools/bootstrap/external/*.lo rm -f tools/bootstrap/persist/*.o rm -f tools/bootstrap/persist/*.lo rm -f tools/bootstrap/src/*.o rm -f tools/bootstrap/src/*.lo rm -f tools/bootstrap/utils/*.o rm -f tools/bootstrap/utils/*.lo rm -f tools/ckpoint/*.o rm -f tools/ckpoint/*.lo rm -f tools/ckpoint/blcr/*.o rm -f tools/ckpoint/blcr/*.lo rm -f tools/debugger/*.o rm -f tools/debugger/*.lo rm -f tools/demux/*.o rm -f tools/demux/*.lo rm -f tools/ftb/*.o rm -f tools/ftb/*.lo rm -f tools/nameserver/*.o rm -f tools/topo/*.o rm -f tools/topo/*.lo rm -f tools/topo/hwloc/*.o rm -f tools/topo/hwloc/*.lo rm -f ui/mpich/*.o rm -f ui/utils/*.o rm -f ui/utils/*.lo rm -f utils/alloc/*.o rm -f utils/alloc/*.lo rm -f utils/args/*.o rm -f utils/args/*.lo rm -f utils/dbg/*.o rm -f utils/dbg/*.lo rm -f utils/env/*.o rm -f utils/env/*.lo rm -f utils/launch/*.o rm -f utils/launch/*.lo rm -f utils/others/*.o rm -f utils/others/*.lo rm -f utils/signals/*.o rm -f utils/signals/*.lo rm -f utils/sock/*.o rm -f utils/sock/*.lo rm -f utils/string/*.o rm -f utils/string/*.lo rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making clean in . make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' rm -f src/env/mpichversion src/env/mpivars test -z "src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod " || rm -f src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod test -z " lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la" || rm -f lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/fortran/mpif_h/.libs src/binding/fortran/mpif_h/_libs rm -rf src/binding/fortran/use_mpi/.libs src/binding/fortran/use_mpi/_libs rm -rf src/binding/fortran/use_mpi_f08/.libs src/binding/fortran/use_mpi_f08/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_c/.libs src/binding/fortran/use_mpi_f08/wrappers_c/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/.libs src/binding/fortran/use_mpi_f08/wrappers_f/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/profiling/.libs src/binding/fortran/use_mpi_f08/wrappers_f/profiling/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/ib/.libs src/mpid/ch3/channels/nemesis/netmod/ib/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mx/.libs src/mpid/ch3/channels/nemesis/netmod/mx/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mxm/.libs src/mpid/ch3/channels/nemesis/netmod/mxm/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/newmad/.libs src/mpid/ch3/channels/nemesis/netmod/newmad/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/scif/.libs src/mpid/ch3/channels/nemesis/netmod/scif/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/common/datatype/.libs src/mpid/common/datatype/_libs rm -rf src/mpid/common/datatype/dataloop/.libs src/mpid/common/datatype/dataloop/_libs rm -rf src/mpid/common/hcoll/.libs src/mpid/common/hcoll/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/sock/poll/.libs src/mpid/common/sock/poll/_libs rm -rf src/mpid/common/thread/.libs src/mpid/common/thread/_libs rm -rf src/mpid/pamid/src/.libs src/mpid/pamid/src/_libs rm -rf src/mpid/pamid/src/coll/.libs src/mpid/pamid/src/coll/_libs rm -rf src/mpid/pamid/src/coll/allgather/.libs src/mpid/pamid/src/coll/allgather/_libs rm -rf src/mpid/pamid/src/coll/allgatherv/.libs src/mpid/pamid/src/coll/allgatherv/_libs rm -rf src/mpid/pamid/src/coll/allreduce/.libs src/mpid/pamid/src/coll/allreduce/_libs rm -rf src/mpid/pamid/src/coll/alltoall/.libs src/mpid/pamid/src/coll/alltoall/_libs rm -rf src/mpid/pamid/src/coll/alltoallv/.libs src/mpid/pamid/src/coll/alltoallv/_libs rm -rf src/mpid/pamid/src/coll/alltoallw/.libs src/mpid/pamid/src/coll/alltoallw/_libs rm -rf src/mpid/pamid/src/coll/barrier/.libs src/mpid/pamid/src/coll/barrier/_libs rm -rf src/mpid/pamid/src/coll/bcast/.libs src/mpid/pamid/src/coll/bcast/_libs rm -rf src/mpid/pamid/src/coll/exscan/.libs src/mpid/pamid/src/coll/exscan/_libs rm -rf src/mpid/pamid/src/coll/gather/.libs src/mpid/pamid/src/coll/gather/_libs rm -rf src/mpid/pamid/src/coll/gatherv/.libs src/mpid/pamid/src/coll/gatherv/_libs rm -rf src/mpid/pamid/src/coll/ired_scat/.libs src/mpid/pamid/src/coll/ired_scat/_libs rm -rf src/mpid/pamid/src/coll/ired_scat_block/.libs src/mpid/pamid/src/coll/ired_scat_block/_libs rm -rf src/mpid/pamid/src/coll/reduce/.libs src/mpid/pamid/src/coll/reduce/_libs rm -rf src/mpid/pamid/src/coll/scan/.libs src/mpid/pamid/src/coll/scan/_libs rm -rf src/mpid/pamid/src/coll/scatter/.libs src/mpid/pamid/src/coll/scatter/_libs rm -rf src/mpid/pamid/src/coll/scatterv/.libs src/mpid/pamid/src/coll/scatterv/_libs rm -rf src/mpid/pamid/src/comm/.libs src/mpid/pamid/src/comm/_libs rm -rf src/mpid/pamid/src/dyntask/.libs src/mpid/pamid/src/dyntask/_libs rm -rf src/mpid/pamid/src/misc/.libs src/mpid/pamid/src/misc/_libs rm -rf src/mpid/pamid/src/mpix/.libs src/mpid/pamid/src/mpix/_libs rm -rf src/mpid/pamid/src/onesided/.libs src/mpid/pamid/src/onesided/_libs rm -rf src/mpid/pamid/src/pamix/.libs src/mpid/pamid/src/pamix/_libs rm -rf src/mpid/pamid/src/pt2pt/.libs src/mpid/pamid/src/pt2pt/_libs rm -rf src/mpid/pamid/src/pt2pt/persistent/.libs src/mpid/pamid/src/pt2pt/persistent/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pmi/pmi2/poe/.libs src/pmi/pmi2/poe/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/util/cvar/.libs src/util/cvar/_libs rm -rf src/util/dbg/.libs src/util/dbg/_libs rm -rf src/util/instrm/.libs src/util/instrm/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/msgs/.libs src/util/msgs/_libs rm -rf src/util/other/.libs src/util/other/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs rm -rf src/util/thread/.libs src/util/thread/_libs ( cd test && /usr/bin/make clean ) make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test' Making clean in mpi make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi' Making clean in util make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/util' rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/util' Making clean in attr make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/attr' Making clean in basic make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/basic' Making clean in datatype make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types dataalign darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents hvecblklen indexed-misc large-count large_type large_type_sendrec lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent sendrecvt2 sendrecvt4 simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack structpack2 struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs vecblklen zeroblks zeroparms" || rm -f blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types dataalign darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents hvecblklen indexed-misc large-count large_type large_type_sendrec lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent sendrecvt2 sendrecvt4 simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack structpack2 struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs vecblklen zeroblks zeroparms rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/datatype' Making clean in coll make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 nonblocking4 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 nonblocking4 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/coll' Making clean in comm make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_idup_mul comm_idup_overlap comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_idup_mul comm_idup_overlap comm_info rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/comm' Making clean in errhan make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errhan' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "adderr commcall errfatal predef_eh errstring2" || rm -f adderr commcall errfatal predef_eh errstring2 rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errhan' Making clean in group make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/group' Making clean in info make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/info' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoenv rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/info' Making clean in init make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/init' Making clean in pt2pt make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/pt2pt' Making clean in rma make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allocmem ircpi test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma-contig badrma nb_test acc-loc fence_shm get-struct at_complete" || rm -f allocmem ircpi test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma-contig badrma nb_test acc-loc fence_shm get-struct at_complete rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/rma' Making clean in topo make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/topo' Making clean in errors make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors' Making clean in attr make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "keyvalmis" || rm -f keyvalmis rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/attr' Making clean in coll make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "noalias rerr bcastlength reduce_local" || rm -f noalias rerr bcastlength reduce_local rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/coll' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/comm' Making clean in datatype make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "getcnterr" || rm -f getcnterr rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/datatype' Making clean in group make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "gerr" || rm -f gerr rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/group' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/pt2pt' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/rma' Making clean in topo make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartsmall" || rm -f cartsmall rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/topo' Making clean in basic make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/basic' Making clean in faults make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/faults' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/faults' Making clean in io make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "fileerrret openerr" || rm -f fileerrret openerr rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/io' Making clean in f77 make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77' Making clean in io make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77/io' make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77' Making clean in f90 make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90' Making clean in io make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90/io' make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90' Making clean in cxx make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx' Making clean in io make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx/io' Making clean in errhan make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx/errhan' make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "badport unpub lookup_name" || rm -f badport unpub lookup_name rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/spawn' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors' Making clean in manual make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual' Making clean in mpi_t make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual/mpi_t' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual' test -z "summary.xml summary.tap summary.junit.xml test-port" || rm -f summary.xml summary.tap summary.junit.xml test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual' Making clean in perf make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/perf' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/perf' Making clean in mpi_t make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpi_t_str mpit_vars cvarwrite" || rm -f mpi_t_str mpit_vars cvarwrite rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/mpi_t' Making clean in impls make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls' Making clean in mpich make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich' Making clean in mpi_t make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "collparmt" || rm -f collparmt rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich/mpi_t' make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls' Making clean in ckpoint make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ckpoint' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "write_ckpoint" || rm -f write_ckpoint rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ckpoint' Making clean in ft make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ft' Making clean in io make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/io' Making clean in f77 make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77' Making clean in util make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/util' rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/util' Making clean in attr make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/attr' Making clean in datatype make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/datatype' Making clean in coll make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/coll' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf statusesf greqf mprobef" || rm -f allpairf statusesf greqf mprobef rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/pt2pt' Making clean in info make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/info' Making clean in init make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/init' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/comm' Making clean in topo make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/topo' Making clean in ext make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/ext' Making clean in profile make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f" || rm -f profile1f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/profile' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/spawn' Making clean in io make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/io' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/rma' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77' Making clean in f90 make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90' Making clean in util make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/util' rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/util' Making clean in timer make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/timer' Making clean in attr make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/attr' Making clean in coll make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/coll' Making clean in datatype make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/datatype' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf90 statusesf90 greqf90 mprobef90" || rm -f allpairf90 statusesf90 greqf90 mprobef90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/pt2pt' Making clean in info make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/info' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/comm' Making clean in topo make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/topo' Making clean in ext make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/ext' Making clean in init make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/init' Making clean in misc make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/misc' Making clean in f90types make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/f90types' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "createf90types" || rm -f createf90types rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/f90types' Making clean in profile make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f90" || rm -f profile1f90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/profile' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/rma' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/spawn' Making clean in io make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/io' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90' Making clean in cxx make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx' Making clean in util make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/util' rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/util' Making clean in attr make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/attr' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/pt2pt' Making clean in init make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/init' Making clean in info make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/info' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/comm' Making clean in coll make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk" || rm -f arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/coll' Making clean in datatype make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "packsizex typecntsx typenamex typemiscx" || rm -f packsizex typecntsx typenamex typemiscx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/datatype' Making clean in errhan make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/errhan' Making clean in topo make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/topo' Making clean in io make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/io' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/rma' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/spawn' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx' Making clean in threads make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads' Making clean in util make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/util' rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/util' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/pt2pt' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_idup ctxidup" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_idup ctxidup rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/comm' Making clean in init make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "initth" || rm -f initth rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/init' Making clean in mpi_t make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_threading" || rm -f mpit_threading rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/mpi_t' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/spawn' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multirma multiget" || rm -f multirma multiget rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/rma' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads' Making clean in spawn make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/spawn' Making clean in ft make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ft' Making clean in . make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi' Making clean in commands make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/commands' Making clean in . make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test' test -z "" || rm -f test -z "" || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/fortran/mpif_h/*.o rm -f src/binding/fortran/mpif_h/*.lo rm -f src/binding/fortran/use_mpi/*.o rm -f src/binding/fortran/use_mpi/*.lo rm -f src/binding/fortran/use_mpi_f08/*.o rm -f src/binding/fortran/use_mpi_f08/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/ib/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/ib/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/common/datatype/*.o rm -f src/mpid/common/datatype/*.lo rm -f src/mpid/common/datatype/dataloop/*.o rm -f src/mpid/common/datatype/dataloop/*.lo rm -f src/mpid/common/hcoll/*.o rm -f src/mpid/common/hcoll/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/sock/poll/*.o rm -f src/mpid/common/sock/poll/*.lo rm -f src/mpid/common/thread/*.o rm -f src/mpid/common/thread/*.lo rm -f src/mpid/pamid/src/*.o rm -f src/mpid/pamid/src/*.lo rm -f src/mpid/pamid/src/coll/*.o rm -f src/mpid/pamid/src/coll/*.lo rm -f src/mpid/pamid/src/coll/allgather/*.o rm -f src/mpid/pamid/src/coll/allgather/*.lo rm -f src/mpid/pamid/src/coll/allgatherv/*.o rm -f src/mpid/pamid/src/coll/allgatherv/*.lo rm -f src/mpid/pamid/src/coll/allreduce/*.o rm -f src/mpid/pamid/src/coll/allreduce/*.lo rm -f src/mpid/pamid/src/coll/alltoall/*.o rm -f src/mpid/pamid/src/coll/alltoall/*.lo rm -f src/mpid/pamid/src/coll/alltoallv/*.o rm -f src/mpid/pamid/src/coll/alltoallv/*.lo rm -f src/mpid/pamid/src/coll/alltoallw/*.o rm -f src/mpid/pamid/src/coll/alltoallw/*.lo rm -f src/mpid/pamid/src/coll/barrier/*.o rm -f src/mpid/pamid/src/coll/barrier/*.lo rm -f src/mpid/pamid/src/coll/bcast/*.o rm -f src/mpid/pamid/src/coll/bcast/*.lo rm -f src/mpid/pamid/src/coll/exscan/*.o rm -f src/mpid/pamid/src/coll/exscan/*.lo rm -f src/mpid/pamid/src/coll/gather/*.o rm -f src/mpid/pamid/src/coll/gather/*.lo rm -f src/mpid/pamid/src/coll/gatherv/*.o rm -f src/mpid/pamid/src/coll/gatherv/*.lo rm -f src/mpid/pamid/src/coll/ired_scat/*.o rm -f src/mpid/pamid/src/coll/ired_scat/*.lo rm -f src/mpid/pamid/src/coll/ired_scat_block/*.o rm -f src/mpid/pamid/src/coll/ired_scat_block/*.lo rm -f src/mpid/pamid/src/coll/reduce/*.o rm -f src/mpid/pamid/src/coll/reduce/*.lo rm -f src/mpid/pamid/src/coll/scan/*.o rm -f src/mpid/pamid/src/coll/scan/*.lo rm -f src/mpid/pamid/src/coll/scatter/*.o rm -f src/mpid/pamid/src/coll/scatter/*.lo rm -f src/mpid/pamid/src/coll/scatterv/*.o rm -f src/mpid/pamid/src/coll/scatterv/*.lo rm -f src/mpid/pamid/src/comm/*.o rm -f src/mpid/pamid/src/comm/*.lo rm -f src/mpid/pamid/src/dyntask/*.o rm -f src/mpid/pamid/src/dyntask/*.lo rm -f src/mpid/pamid/src/misc/*.o rm -f src/mpid/pamid/src/misc/*.lo rm -f src/mpid/pamid/src/mpix/*.o rm -f src/mpid/pamid/src/mpix/*.lo rm -f src/mpid/pamid/src/onesided/*.o rm -f src/mpid/pamid/src/onesided/*.lo rm -f src/mpid/pamid/src/pamix/*.o rm -f src/mpid/pamid/src/pamix/*.lo rm -f src/mpid/pamid/src/pt2pt/*.o rm -f src/mpid/pamid/src/pt2pt/*.lo rm -f src/mpid/pamid/src/pt2pt/persistent/*.o rm -f src/mpid/pamid/src/pt2pt/persistent/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/util/*.o rm -f src/pmi/pmi2/poe/*.o rm -f src/pmi/pmi2/poe/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/util/cvar/*.o rm -f src/util/cvar/*.lo rm -f src/util/dbg/*.o rm -f src/util/dbg/*.lo rm -f src/util/instrm/*.o rm -f src/util/instrm/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/msgs/*.o rm -f src/util/msgs/*.lo rm -f src/util/other/*.o rm -f src/util/other/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f src/util/thread/*.o rm -f src/util/thread/*.lo rm -f *.lo make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making clean in examples make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3 && /usr/bin/make -j 4 stdout: if test ! -h ./src/include/mpio.h ; then \ rm -f ./src/include/mpio.h ; \ ( cd ./src/include && \ ln -s ../mpi/romio/include/mpio.h ) ; \ fi /usr/bin/make all-recursive make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making all in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' CC src/mplstr.lo CC src/mpltrmem.lo CC src/mplenv.lo CC src/mplsock.lo CCLD libmpl.la make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making all in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making all in src make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' /usr/bin/make all-am make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' Making all in test make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making all in src/mpi/romio make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC mpi-io/close.lo CC mpi-io/file_c2f.lo CC mpi-io/delete.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atallb.lo CC mpi-io/rd_atalle.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_set_view.lo CC adio/common/ad_subarray.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap-sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CC adio/common/hint_fns.lo CC adio/common/ad_threaded_io.lo CC adio/common/p2p_aggregation.lo CC adio/common/utils.lo CCLD libromio.la make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' Making all in src/pm/hydra make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making all in ../../mpl make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making all in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in src make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-xml-libxml.lo CC topology-linux.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making all in include make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' CC tools/bootstrap/persist/hydra_persist-persist_server.o CC utils/alloc/alloc.lo CC utils/args/args.lo CC utils/dbg/dbg.lo CC utils/env/env.lo CC utils/launch/launch.lo CC utils/others/others.lo CC utils/signals/signals.lo CC utils/sock/sock.lo CC utils/string/string.lo CC tools/topo/topo.lo CC tools/topo/hwloc/topo_hwloc.lo CC tools/bootstrap/src/bsci_init.lo CC tools/bootstrap/src/bsci_finalize.lo CC tools/bootstrap/src/bsci_launch.lo CC tools/bootstrap/src/bsci_query_node_list.lo CC tools/bootstrap/src/bsci_query_proxy_id.lo CC tools/bootstrap/src/bsci_query_native_int.lo CC tools/bootstrap/src/bsci_wait.lo CC tools/bootstrap/src/bsci_env.lo CC tools/bootstrap/utils/bscu_wait.lo CC tools/bootstrap/utils/bscu_cb.lo CC tools/bootstrap/external/external_common.lo CC tools/bootstrap/external/external_common_launch.lo CC tools/bootstrap/external/fork_init.lo CC tools/bootstrap/external/user_init.lo CC tools/bootstrap/external/manual_init.lo CC tools/bootstrap/external/rsh_init.lo CC tools/bootstrap/external/rsh_env.lo CC tools/bootstrap/external/ssh_init.lo CC tools/bootstrap/external/ssh.lo CC tools/bootstrap/external/ssh_env.lo CC tools/bootstrap/external/ssh_finalize.lo CC tools/bootstrap/external/slurm_init.lo CC tools/bootstrap/external/slurm_launch.lo CC tools/bootstrap/external/slurm_env.lo CC tools/bootstrap/external/slurm_query_native_int.lo CC tools/bootstrap/external/slurm_query_node_list.lo CC tools/bootstrap/external/slurm_query_proxy_id.lo CC tools/bootstrap/external/ll_init.lo CC tools/bootstrap/external/ll_launch.lo CC tools/bootstrap/external/ll_query_native_int.lo CC tools/bootstrap/external/ll_query_node_list.lo CC tools/bootstrap/external/ll_query_proxy_id.lo CC tools/bootstrap/external/ll_env.lo CC tools/bootstrap/external/lsf_init.lo CC tools/bootstrap/external/lsf_query_native_int.lo CC tools/bootstrap/external/lsf_query_node_list.lo CC tools/bootstrap/external/lsf_env.lo CC tools/bootstrap/external/sge_init.lo CC tools/bootstrap/external/sge_query_native_int.lo CC tools/bootstrap/external/sge_query_node_list.lo CC tools/bootstrap/external/sge_env.lo CC tools/bootstrap/external/pbs_init.lo CC tools/bootstrap/external/pbs_query_native_int.lo CC tools/bootstrap/external/pbs_query_node_list.lo CC tools/bootstrap/external/cobalt_init.lo CC tools/bootstrap/external/cobalt_query_native_int.lo CC tools/bootstrap/external/cobalt_query_node_list.lo CC tools/bootstrap/persist/persist_init.lo CC tools/bootstrap/persist/persist_launch.lo CC tools/bootstrap/persist/persist_wait.lo CC tools/ckpoint/ckpoint.lo CC tools/demux/demux.lo CC tools/demux/demux_poll.lo CC tools/demux/demux_select.lo CC tools/debugger/debugger.lo CC tools/ftb/hydt_ftb_dummy.lo CC ui/utils/uiu.lo CC pm/pmiserv/pmiserv_pmi.lo CC pm/pmiserv/pmiserv_pmi_v1.lo CC pm/pmiserv/pmiserv_pmi_v2.lo CC pm/pmiserv/pmiserv_pmci.lo CC pm/pmiserv/pmiserv_cb.lo CC pm/pmiserv/pmiserv_utils.lo CC pm/pmiserv/common.lo CC pm/pmiserv/pmi_v2_common.lo CC tools/nameserver/hydra_nameserver-hydra_nameserver.o CC pm/pmiserv/hydra_pmi_proxy-pmip.o CC pm/pmiserv/hydra_pmi_proxy-pmip_cb.o CC pm/pmiserv/hydra_pmi_proxy-pmip_utils.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v1.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v2.o CC pm/pmiserv/hydra_pmi_proxy-common.o CC pm/pmiserv/hydra_pmi_proxy-pmi_v2_common.o CC ui/mpich/mpiexec.o CC ui/mpich/utils.o CCLD libhydra.la CCLD hydra_persist CCLD hydra_nameserver CCLD hydra_pmi_proxy CCLD libpm.la CCLD mpiexec.hydra make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making all in . make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' CC src/mpi/attr/lib_libmpi_la-attrutil.lo CC src/mpi/coll/lib_libmpi_la-allred_group.lo CC src/mpi/attr/lib_libmpi_la-dup_fn.lo CC src/mpi/coll/lib_libmpi_la-barrier_group.lo CC src/mpi/coll/lib_libmpi_la-helper_fns.lo CC src/mpi/coll/lib_libmpi_la-opsum.lo CC src/mpi/coll/lib_libmpi_la-opmax.lo CC src/mpi/coll/lib_libmpi_la-opmin.lo CC src/mpi/coll/lib_libmpi_la-opband.lo CC src/mpi/coll/lib_libmpi_la-opbor.lo CC src/mpi/coll/lib_libmpi_la-opbxor.lo CC src/mpi/coll/lib_libmpi_la-opland.lo CC src/mpi/coll/lib_libmpi_la-oplor.lo CC src/mpi/coll/lib_libmpi_la-oplxor.lo CC src/mpi/coll/lib_libmpi_la-opprod.lo CC src/mpi/coll/lib_libmpi_la-opminloc.lo CC src/mpi/coll/lib_libmpi_la-opmaxloc.lo CC src/mpi/coll/lib_libmpi_la-opno_op.lo CC src/mpi/coll/lib_libmpi_la-opreplace.lo CC src/mpi/coll/lib_libmpi_la-nbcutil.lo CC src/mpi/comm/lib_libmpi_la-commutil.lo CC src/mpi/datatype/lib_libmpi_la-typeutil.lo CC src/mpi/errhan/lib_libmpi_la-errutil.lo CC src/mpi/errhan/lib_libmpi_la-dynerrutil.lo CC src/mpi/group/lib_libmpi_la-grouputil.lo CC src/mpi/info/lib_libmpi_la-infoutil.lo CC src/mpi/init/lib_libmpi_la-initinfo.lo CC src/mpi/init/lib_libmpi_la-async.lo CC src/mpi/pt2pt/lib_libmpi_la-bsendutil.lo CC src/mpi/pt2pt/lib_libmpi_la-mpir_request.lo CC src/mpi/rma/lib_libmpi_la-winutil.lo CC src/mpi/rma/lib_libmpi_la-rmatypeutil.lo CC src/mpi/timer/lib_libmpi_la-mpidtime.lo CC src/mpi/topo/lib_libmpi_la-topoutil.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-fdebug.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-setbot.lo F77 src/binding/fortran/mpif_h/setbotf.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_util.lo CC src/glue/romio/lib_libmpi_la-glue_romio.lo CC src/mpi_t/lib_libmpi_la-mpit.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprexclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dup_with_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_splitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commtesticf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrsizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrgroupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iccreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-icmergef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-topo_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dims_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graphdims_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cartdim_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_coordsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbcountf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbrsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_shiftf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_subf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getpnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_library_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhcreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhfreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_stringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_classf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initializedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-abortf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-close_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_acceptf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_connectf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdiscf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commparentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_joinf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_spawnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-spawnmultf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-lookup_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-open_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-publish_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpubnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_completef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_fencef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_postf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocate_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_shared_queryf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_create_dynamicf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_attachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_detachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fetch_and_opf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-compare_and_swapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rputf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-raccumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rget_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flushf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_local_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrclassf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrcodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrstringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgetnamf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqcompletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqstartf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isthrmainf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-query_threadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statgetclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statsetelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typenewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typefreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetcntsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetenvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_match_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-windelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alloc_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filegeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fileseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-free_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognthkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infovallenf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_setf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_externalf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packesizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reqgetstatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedarrayf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechindf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechvecf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecindbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_create_hindexed_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecresizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecstructf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecsubarrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetextentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegtextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wingeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_commutativef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_create_adjacentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighbors_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighborsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-improbef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-imrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_idupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibarrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iexscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo rm -f src/binding/fortran/use_mpi/mpifnoext.h sed -e 's/^C/\!/g' -e '/EXTERNAL/d' \ -e '/REAL\*8/d' \ -e '/DOUBLE PRECISION/d' \ -e '/MPI_WTICK/d' src/binding/fortran/mpif_h/mpif.h > src/binding/fortran/use_mpi/mpifnoext.h cp -p src/env/mpicc.bash src/env/mpicc cp -p src/env/mpifort.bash src/env/mpifort cp -p src/env/mpicxx.bash src/env/mpicxx CC src/mpi/attr/lib_libmpi_la-attr_delete.lo CC src/mpi/attr/lib_libmpi_la-attr_get.lo CC src/mpi/attr/lib_libmpi_la-attr_put.lo CC src/mpi/attr/lib_libmpi_la-comm_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_get_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_set_attr.lo CC src/mpi/attr/lib_libmpi_la-keyval_create.lo CC src/mpi/attr/lib_libmpi_la-keyval_free.lo CC src/mpi/attr/lib_libmpi_la-type_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-type_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_get_attr.lo CC src/mpi/attr/lib_libmpi_la-type_set_attr.lo CC src/mpi/attr/lib_libmpi_la-win_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-win_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_get_attr.lo CC src/mpi/attr/lib_libmpi_la-win_set_attr.lo CC src/mpi/coll/lib_libmpi_la-allreduce.lo CC src/mpi/coll/lib_libmpi_la-barrier.lo CC src/mpi/coll/lib_libmpi_la-op_create.lo CC src/mpi/coll/lib_libmpi_la-op_free.lo CC src/mpi/coll/lib_libmpi_la-bcast.lo CC src/mpi/coll/lib_libmpi_la-alltoall.lo CC src/mpi/coll/lib_libmpi_la-alltoallv.lo CC src/mpi/coll/lib_libmpi_la-reduce.lo CC src/mpi/coll/lib_libmpi_la-scatter.lo CC src/mpi/coll/lib_libmpi_la-gather.lo CC src/mpi/coll/lib_libmpi_la-scatterv.lo CC src/mpi/coll/lib_libmpi_la-gatherv.lo CC src/mpi/coll/lib_libmpi_la-scan.lo CC src/mpi/coll/lib_libmpi_la-exscan.lo CC src/mpi/coll/lib_libmpi_la-allgather.lo CC src/mpi/coll/lib_libmpi_la-allgatherv.lo CC src/mpi/coll/lib_libmpi_la-red_scat.lo CC src/mpi/coll/lib_libmpi_la-alltoallw.lo CC src/mpi/coll/lib_libmpi_la-reduce_local.lo CC src/mpi/coll/lib_libmpi_la-op_commutative.lo CC src/mpi/coll/lib_libmpi_la-red_scat_block.lo CC src/mpi/coll/lib_libmpi_la-iallgather.lo CC src/mpi/coll/lib_libmpi_la-iallgatherv.lo CC src/mpi/coll/lib_libmpi_la-iallreduce.lo CC src/mpi/coll/lib_libmpi_la-ialltoall.lo CC src/mpi/coll/lib_libmpi_la-ialltoallv.lo CC src/mpi/coll/lib_libmpi_la-ialltoallw.lo CC src/mpi/coll/lib_libmpi_la-ibarrier.lo CC src/mpi/coll/lib_libmpi_la-ibcast.lo CC src/mpi/coll/lib_libmpi_la-iexscan.lo CC src/mpi/coll/lib_libmpi_la-igather.lo CC src/mpi/coll/lib_libmpi_la-igatherv.lo CC src/mpi/coll/lib_libmpi_la-ired_scat.lo CC src/mpi/coll/lib_libmpi_la-ired_scat_block.lo CC src/mpi/coll/lib_libmpi_la-ireduce.lo CC src/mpi/coll/lib_libmpi_la-iscan.lo CC src/mpi/coll/lib_libmpi_la-iscatter.lo CC src/mpi/coll/lib_libmpi_la-iscatterv.lo CC src/mpi/comm/lib_libmpi_la-comm_compare.lo CC src/mpi/comm/lib_libmpi_la-comm_create.lo CC src/mpi/comm/lib_libmpi_la-comm_create_group.lo CC src/mpi/comm/lib_libmpi_la-comm_dup.lo CC src/mpi/comm/lib_libmpi_la-comm_dup_with_info.lo CC src/mpi/comm/lib_libmpi_la-comm_free.lo CC src/mpi/comm/lib_libmpi_la-comm_get_name.lo CC src/mpi/comm/lib_libmpi_la-comm_get_info.lo CC src/mpi/comm/lib_libmpi_la-comm_set_info.lo CC src/mpi/comm/lib_libmpi_la-comm_group.lo CC src/mpi/comm/lib_libmpi_la-comm_idup.lo CC src/mpi/comm/lib_libmpi_la-comm_rank.lo CC src/mpi/comm/lib_libmpi_la-comm_size.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_group.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_size.lo CC src/mpi/comm/lib_libmpi_la-comm_set_name.lo CC src/mpi/comm/lib_libmpi_la-comm_split.lo CC src/mpi/comm/lib_libmpi_la-comm_test_inter.lo CC src/mpi/comm/lib_libmpi_la-intercomm_create.lo CC src/mpi/comm/lib_libmpi_la-intercomm_merge.lo CC src/mpi/comm/lib_libmpi_la-comm_split_type.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_ack.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_get_acked.lo CC src/mpi/comm/lib_libmpi_la-comm_revoke.lo CC src/mpi/comm/lib_libmpi_la-comm_shrink.lo CC src/mpi/comm/lib_libmpi_la-comm_agree.lo CC src/mpi/datatype/lib_libmpi_la-address.lo CC src/mpi/datatype/lib_libmpi_la-get_address.lo CC src/mpi/datatype/lib_libmpi_la-get_count.lo CC src/mpi/datatype/lib_libmpi_la-get_elements.lo CC src/mpi/datatype/lib_libmpi_la-get_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-pack.lo CC src/mpi/datatype/lib_libmpi_la-unpack.lo CC src/mpi/datatype/lib_libmpi_la-pack_size.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_name.lo CC src/mpi/datatype/lib_libmpi_la-type_set_name.lo CC src/mpi/datatype/lib_libmpi_la-type_size.lo CC src/mpi/datatype/lib_libmpi_la-type_size_x.lo CC src/mpi/datatype/lib_libmpi_la-type_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_vector.lo CC src/mpi/datatype/lib_libmpi_la-type_commit.lo CC src/mpi/datatype/lib_libmpi_la-type_indexed.lo CC src/mpi/datatype/lib_libmpi_la-type_hindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_struct.lo CC src/mpi/datatype/lib_libmpi_la-type_contiguous.lo CC src/mpi/datatype/lib_libmpi_la-type_free.lo CC src/mpi/datatype/lib_libmpi_la-type_hvector.lo CC src/mpi/datatype/lib_libmpi_la-type_dup.lo CC src/mpi/datatype/lib_libmpi_la-type_get_envelope.lo CC src/mpi/datatype/lib_libmpi_la-type_get_contents.lo CC src/mpi/datatype/lib_libmpi_la-type_ub.lo CC src/mpi/datatype/lib_libmpi_la-type_lb.lo CC src/mpi/datatype/lib_libmpi_la-type_get_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_get_extent_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_true_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_get_true_extent_x.lo CC src/mpi/datatype/lib_libmpi_la-type_match_size.lo CC src/mpi/datatype/lib_libmpi_la-type_create_struct.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hvector.lo CC src/mpi/datatype/lib_libmpi_la-pack_external.lo CC src/mpi/datatype/lib_libmpi_la-pack_external_size.lo CC src/mpi/datatype/lib_libmpi_la-unpack_external.lo CC src/mpi/datatype/lib_libmpi_la-type_create_indexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hindexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_resized.lo CC src/mpi/datatype/lib_libmpi_la-type_create_darray.lo CC src/mpi/datatype/lib_libmpi_la-type_create_subarray.lo CC src/mpi/errhan/lib_libmpi_la-add_error_code.lo CC src/mpi/errhan/lib_libmpi_la-add_error_class.lo CC src/mpi/errhan/lib_libmpi_la-add_error_string.lo CC src/mpi/errhan/lib_libmpi_la-comm_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_create.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_free.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_get.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_set.lo CC src/mpi/errhan/lib_libmpi_la-error_class.lo CC src/mpi/errhan/lib_libmpi_la-error_string.lo CC src/mpi/errhan/lib_libmpi_la-file_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_set_errhandler.lo CC src/mpi/group/lib_libmpi_la-group_compare.lo CC src/mpi/group/lib_libmpi_la-group_difference.lo CC src/mpi/group/lib_libmpi_la-group_excl.lo CC src/mpi/group/lib_libmpi_la-group_free.lo CC src/mpi/group/lib_libmpi_la-group_incl.lo CC src/mpi/group/lib_libmpi_la-group_intersection.lo CC src/mpi/group/lib_libmpi_la-group_range_excl.lo CC src/mpi/group/lib_libmpi_la-group_range_incl.lo CC src/mpi/group/lib_libmpi_la-group_rank.lo CC src/mpi/group/lib_libmpi_la-group_size.lo CC src/mpi/group/lib_libmpi_la-group_translate_ranks.lo CC src/mpi/group/lib_libmpi_la-group_union.lo CC src/mpi/info/lib_libmpi_la-info_create.lo CC src/mpi/info/lib_libmpi_la-info_delete.lo CC src/mpi/info/lib_libmpi_la-info_dup.lo CC src/mpi/info/lib_libmpi_la-info_free.lo CC src/mpi/info/lib_libmpi_la-info_get.lo CC src/mpi/info/lib_libmpi_la-info_getn.lo CC src/mpi/info/lib_libmpi_la-info_getnth.lo CC src/mpi/info/lib_libmpi_la-info_getvallen.lo CC src/mpi/info/lib_libmpi_la-info_set.lo CC src/mpi/init/lib_libmpi_la-abort.lo CC src/mpi/init/lib_libmpi_la-init.lo CC src/mpi/init/lib_libmpi_la-initialized.lo CC src/mpi/init/lib_libmpi_la-initthread.lo CC src/mpi/init/lib_libmpi_la-ismain.lo CC src/mpi/init/lib_libmpi_la-finalize.lo CC src/mpi/init/lib_libmpi_la-finalized.lo CC src/mpi/init/lib_libmpi_la-querythread.lo CC src/mpi/misc/lib_libmpi_la-getpname.lo CC src/mpi/misc/lib_libmpi_la-pcontrol.lo CC src/mpi/misc/lib_libmpi_la-version.lo CC src/mpi/misc/lib_libmpi_la-library_version.lo CC src/mpi/pt2pt/lib_libmpi_la-bsend.lo CC src/mpi/pt2pt/lib_libmpi_la-bsend_init.lo CC src/mpi/pt2pt/lib_libmpi_la-bufattach.lo CC src/mpi/pt2pt/lib_libmpi_la-buffree.lo CC src/mpi/pt2pt/lib_libmpi_la-cancel.lo CC src/mpi/pt2pt/lib_libmpi_la-greq_start.lo CC src/mpi/pt2pt/lib_libmpi_la-greq_complete.lo CC src/mpi/pt2pt/lib_libmpi_la-ibsend.lo CC src/mpi/pt2pt/lib_libmpi_la-improbe.lo CC src/mpi/pt2pt/lib_libmpi_la-imrecv.lo CC src/mpi/pt2pt/lib_libmpi_la-iprobe.lo CC src/mpi/pt2pt/lib_libmpi_la-irecv.lo CC src/mpi/pt2pt/lib_libmpi_la-irsend.lo CC src/mpi/pt2pt/lib_libmpi_la-isend.lo CC src/mpi/pt2pt/lib_libmpi_la-issend.lo CC src/mpi/pt2pt/lib_libmpi_la-mprobe.lo CC src/mpi/pt2pt/lib_libmpi_la-mrecv.lo CC src/mpi/pt2pt/lib_libmpi_la-probe.lo CC src/mpi/pt2pt/lib_libmpi_la-recv.lo CC src/mpi/pt2pt/lib_libmpi_la-recv_init.lo CC src/mpi/pt2pt/lib_libmpi_la-request_free.lo CC src/mpi/pt2pt/lib_libmpi_la-request_get_status.lo CC src/mpi/pt2pt/lib_libmpi_la-rsend.lo CC src/mpi/pt2pt/lib_libmpi_la-rsend_init.lo CC src/mpi/pt2pt/lib_libmpi_la-send.lo CC src/mpi/pt2pt/lib_libmpi_la-send_init.lo CC src/mpi/pt2pt/lib_libmpi_la-sendrecv.lo CC src/mpi/pt2pt/lib_libmpi_la-sendrecv_rep.lo CC src/mpi/pt2pt/lib_libmpi_la-status_set_cancelled.lo CC src/mpi/pt2pt/lib_libmpi_la-ssend.lo CC src/mpi/pt2pt/lib_libmpi_la-ssend_init.lo CC src/mpi/pt2pt/lib_libmpi_la-start.lo CC src/mpi/pt2pt/lib_libmpi_la-startall.lo CC src/mpi/pt2pt/lib_libmpi_la-test.lo CC src/mpi/pt2pt/lib_libmpi_la-test_cancelled.lo CC src/mpi/pt2pt/lib_libmpi_la-testall.lo CC src/mpi/pt2pt/lib_libmpi_la-testany.lo CC src/mpi/pt2pt/lib_libmpi_la-testsome.lo CC src/mpi/pt2pt/lib_libmpi_la-wait.lo CC src/mpi/pt2pt/lib_libmpi_la-waitall.lo CC src/mpi/pt2pt/lib_libmpi_la-waitany.lo CC src/mpi/pt2pt/lib_libmpi_la-waitsome.lo CC src/mpi/rma/lib_libmpi_la-accumulate.lo CC src/mpi/rma/lib_libmpi_la-alloc_mem.lo CC src/mpi/rma/lib_libmpi_la-compare_and_swap.lo CC src/mpi/rma/lib_libmpi_la-fetch_and_op.lo CC src/mpi/rma/lib_libmpi_la-free_mem.lo CC src/mpi/rma/lib_libmpi_la-get.lo CC src/mpi/rma/lib_libmpi_la-get_accumulate.lo CC src/mpi/rma/lib_libmpi_la-put.lo CC src/mpi/rma/lib_libmpi_la-raccumulate.lo CC src/mpi/rma/lib_libmpi_la-rget.lo CC src/mpi/rma/lib_libmpi_la-rget_accumulate.lo CC src/mpi/rma/lib_libmpi_la-rput.lo CC src/mpi/rma/lib_libmpi_la-win_allocate.lo CC src/mpi/rma/lib_libmpi_la-win_allocate_shared.lo CC src/mpi/rma/lib_libmpi_la-win_attach.lo CC src/mpi/rma/lib_libmpi_la-win_complete.lo CC src/mpi/rma/lib_libmpi_la-win_create.lo CC src/mpi/rma/lib_libmpi_la-win_create_dynamic.lo CC src/mpi/rma/lib_libmpi_la-win_detach.lo CC src/mpi/rma/lib_libmpi_la-win_fence.lo CC src/mpi/rma/lib_libmpi_la-win_flush.lo CC src/mpi/rma/lib_libmpi_la-win_flush_all.lo CC src/mpi/rma/lib_libmpi_la-win_flush_local.lo CC src/mpi/rma/lib_libmpi_la-win_flush_local_all.lo CC src/mpi/rma/lib_libmpi_la-win_free.lo CC src/mpi/rma/lib_libmpi_la-win_get_group.lo CC src/mpi/rma/lib_libmpi_la-win_get_info.lo CC src/mpi/rma/lib_libmpi_la-win_get_name.lo CC src/mpi/rma/lib_libmpi_la-win_lock.lo CC src/mpi/rma/lib_libmpi_la-win_lock_all.lo CC src/mpi/rma/lib_libmpi_la-win_post.lo CC src/mpi/rma/lib_libmpi_la-win_set_info.lo CC src/mpi/rma/lib_libmpi_la-win_set_name.lo CC src/mpi/rma/lib_libmpi_la-win_shared_query.lo CC src/mpi/rma/lib_libmpi_la-win_start.lo CC src/mpi/rma/lib_libmpi_la-win_sync.lo CC src/mpi/rma/lib_libmpi_la-win_test.lo CC src/mpi/rma/lib_libmpi_la-win_unlock.lo CC src/mpi/rma/lib_libmpi_la-win_unlock_all.lo CC src/mpi/rma/lib_libmpi_la-win_wait.lo CC src/mpi/spawn/lib_libmpi_la-comm_disconnect.lo CC src/mpi/spawn/lib_libmpi_la-comm_get_parent.lo CC src/mpi/spawn/lib_libmpi_la-comm_join.lo CC src/mpi/spawn/lib_libmpi_la-comm_spawn.lo CC src/mpi/spawn/lib_libmpi_la-comm_spawn_multiple.lo CC src/mpi/spawn/lib_libmpi_la-lookup_name.lo CC src/mpi/spawn/lib_libmpi_la-publish_name.lo CC src/mpi/spawn/lib_libmpi_la-unpublish_name.lo CC src/mpi/spawn/lib_libmpi_la-open_port.lo CC src/mpi/spawn/lib_libmpi_la-close_port.lo CC src/mpi/spawn/lib_libmpi_la-comm_connect.lo CC src/mpi/spawn/lib_libmpi_la-comm_accept.lo CC src/mpi/timer/lib_libmpi_la-wtime.lo CC src/mpi/timer/lib_libmpi_la-wtick.lo CC src/mpi/topo/lib_libmpi_la-cart_coords.lo CC src/mpi/topo/lib_libmpi_la-cart_create.lo CC src/mpi/topo/lib_libmpi_la-cart_get.lo CC src/mpi/topo/lib_libmpi_la-cart_map.lo CC src/mpi/topo/lib_libmpi_la-cart_rank.lo CC src/mpi/topo/lib_libmpi_la-cart_shift.lo CC src/mpi/topo/lib_libmpi_la-cart_sub.lo CC src/mpi/topo/lib_libmpi_la-dims_create.lo CC src/mpi/topo/lib_libmpi_la-graph_get.lo CC src/mpi/topo/lib_libmpi_la-graph_map.lo CC src/mpi/topo/lib_libmpi_la-graph_nbr.lo CC src/mpi/topo/lib_libmpi_la-graphcreate.lo CC src/mpi/topo/lib_libmpi_la-graphdimsget.lo CC src/mpi/topo/lib_libmpi_la-graphnbrcnt.lo CC src/mpi/topo/lib_libmpi_la-cartdim_get.lo CC src/mpi/topo/lib_libmpi_la-topo_test.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_create_adj.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_create.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_neighb_count.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_neighb.lo CC src/mpi/topo/lib_libmpi_la-inhb_allgather.lo CC src/mpi/topo/lib_libmpi_la-inhb_allgatherv.lo CC src/mpi/topo/lib_libmpi_la-inhb_alltoall.lo CC src/mpi/topo/lib_libmpi_la-inhb_alltoallv.lo CC src/mpi/topo/lib_libmpi_la-inhb_alltoallw.lo CC src/mpi/topo/lib_libmpi_la-nhb_allgather.lo CC src/mpi/topo/lib_libmpi_la-nhb_allgatherv.lo CC src/mpi/topo/lib_libmpi_la-nhb_alltoall.lo CC src/mpi/topo/lib_libmpi_la-nhb_alltoallv.lo CC src/mpi/topo/lib_libmpi_la-nhb_alltoallw.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-statusf2c.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-statusc2f.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_int.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_real.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_complex.lo CC src/glue/romio/lib_libmpi_la-all_romio_symbols.lo CC src/mutex/lib_libmpi_la-mutex_create.lo CC src/mutex/lib_libmpi_la-mutex_free.lo CC src/mutex/lib_libmpi_la-mutex_lock.lo CC src/mutex/lib_libmpi_la-mutex_unlock.lo CC src/mpi_t/lib_libmpi_la-cat_changed.lo CC src/mpi_t/lib_libmpi_la-cat_get_categories.lo CC src/mpi_t/lib_libmpi_la-cat_get_cvars.lo CC src/mpi_t/lib_libmpi_la-cat_get_info.lo CC src/mpi_t/lib_libmpi_la-cat_get_num.lo CC src/mpi_t/lib_libmpi_la-cat_get_pvars.lo CC src/mpi_t/lib_libmpi_la-cvar_get_info.lo CC src/mpi_t/lib_libmpi_la-cvar_get_num.lo CC src/mpi_t/lib_libmpi_la-cvar_handle_alloc.lo CC src/mpi_t/lib_libmpi_la-cvar_handle_free.lo CC src/mpi_t/lib_libmpi_la-cvar_read.lo CC src/mpi_t/lib_libmpi_la-cvar_write.lo CC src/mpi_t/lib_libmpi_la-enum_get_info.lo CC src/mpi_t/lib_libmpi_la-enum_get_item.lo CC src/mpi_t/lib_libmpi_la-mpit_finalize.lo CC src/mpi_t/lib_libmpi_la-mpit_initthread.lo CC src/mpi_t/lib_libmpi_la-pvar_get_info.lo CC src/mpi_t/lib_libmpi_la-pvar_get_num.lo CC src/mpi_t/lib_libmpi_la-pvar_handle_alloc.lo CC src/mpi_t/lib_libmpi_la-pvar_handle_free.lo CC src/mpi_t/lib_libmpi_la-pvar_read.lo CC src/mpi_t/lib_libmpi_la-pvar_readreset.lo CC src/mpi_t/lib_libmpi_la-pvar_reset.lo CC src/mpi_t/lib_libmpi_la-pvar_session_create.lo CC src/mpi_t/lib_libmpi_la-pvar_session_free.lo CC src/mpi_t/lib_libmpi_la-pvar_start.lo CC src/mpi_t/lib_libmpi_la-pvar_stop.lo CC src/mpi_t/lib_libmpi_la-pvar_write.lo CC src/util/dbg/lib_libmpi_la-dbg_printf.lo CC src/util/dbg/lib_libmpi_la-timelimit.lo CC src/util/dbg/lib_libmpi_la-exit.lo CC src/util/instrm/lib_libmpi_la-states.lo CC src/util/instrm/lib_libmpi_la-instr.lo CC src/util/mem/lib_libmpi_la-trmem.lo CC src/util/mem/lib_libmpi_la-handlemem.lo CC src/util/mem/lib_libmpi_la-safestr.lo CC src/util/mem/lib_libmpi_la-argstr.lo CC src/util/mem/lib_libmpi_la-strerror.lo CC src/util/msgs/lib_libmpi_la-msgprint.lo CC src/util/other/lib_libmpi_la-outliers.lo CC src/util/other/lib_libmpi_la-assert.lo CC src/util/cvar/lib_libmpi_la-mpich_cvars.lo CC src/util/procmap/lib_libmpi_la-local_proc.lo CC src/util/thread/lib_libmpi_la-mpiu_thread.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_buffer.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_comm.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_comm_spawn_multiple.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_connection.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_recv_pkt.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_recv_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_revoke_pkt.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_send_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_port.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_recvq.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_request.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_acc_ops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_ops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_reqops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_sync.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rndv.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_eager.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_eagersync.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_win_fns.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_abort.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_cancel_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_cancel_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_disconnect.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_spawn_multiple.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_failure_ack.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_get_all_failed_procs.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_revoke.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_agree.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_finalize.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_get_universe_size.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_getpname.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_improbe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_imrecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_init.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_iprobe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_irecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_irsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_isend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_issend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_mprobe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_mrecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_port.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_probe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_ssend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_startall.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_vc.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rma.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_isend_self.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_pg.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_printf.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_init_sock.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_connect_sock.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_getinterfaces.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_finalize.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_init.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_isend.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_isendv.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_istartmsg.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_istartmsgv.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_progress.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_win_fns.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-darray_support.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_blockindexed.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_contig.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_indexed.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_pairtype.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_struct.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_vector.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-segment.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-segment_count.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-segment_flatten.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-segment_packunpack.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-subarray_support.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_contents_support.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_datatype_contents.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_datatype_free.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_ext32_datatype.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_ext32_segment.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_segment.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_blockindexed.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_commit.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_contiguous.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_create_pairtype.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_create_resized.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_debug.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_dup.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_get_contents.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_get_envelope.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_indexed.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_struct.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_vector.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_zerolen.lo CC src/mpid/common/datatype/lib_libmpi_la-mpir_type_flatten.lo CC src/mpid/common/sched/lib_libmpi_la-mpid_sched.lo CC src/mpid/common/sock/poll/lib_libmpi_la-sock.lo CC src/mpid/common/thread/lib_libmpi_la-mpid_thread.lo CC src/nameserv/pmi/lib_libmpi_la-pmi_nameserv.lo CC src/pmi/simple/lib_libmpi_la-simple_pmiutil.lo CC src/pmi/simple/lib_libmpi_la-simple_pmi.lo MOD src/binding/fortran/use_mpi/mpi_constants.mod-stamp MOD src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp CXX src/binding/cxx/initcxx.lo CC src/env/mpichversion.o CC src/env/mpivars.o GEN lib/libmpi.la MOD src/binding/fortran/use_mpi/mpi_base.mod-stamp MOD src/binding/fortran/use_mpi/mpi.mod-stamp CXXLD lib/libmpicxx.la GEN lib/libmpifort.la CCLD src/env/mpichversion CCLD src/env/mpivars make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making all in examples make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' CC cpi.o CCLD cpi make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' =============================================================================== Running make install on MPICH; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3 && /usr/bin/make install stdout: /usr/bin/make install-recursive make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making install in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[3]: Nothing to be done for `install-exec-am'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making install in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making install in src make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 opa_primitives.h opa_queue.h opa_util.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/primitives' /usr/bin/install -c -m 644 primitives/opa_by_lock.h primitives/opa_emulated.h primitives/opa_gcc_ia64.h primitives/opa_gcc_intel_32_64.h primitives/opa_gcc_intel_32_64_barrier.h primitives/opa_gcc_intel_32_64_ops.h primitives/opa_gcc_intel_32_64_p3.h primitives/opa_gcc_intel_32_64_p3barrier.h primitives/opa_gcc_intrinsics.h primitives/opa_gcc_ppc.h primitives/opa_gcc_sicortex.h primitives/opa_nt_intrinsics.h primitives/opa_sun_atomic_ops.h primitives/opa_unsafe.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/primitives' /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 opa_config.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' Making install in test make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/pkgconfig' /usr/bin/install -c -m 644 openpa.pc '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/pkgconfig' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making install in src/mpi/romio make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 include/mpio.h include/mpiof.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' Making install in src/pm/hydra make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making install in ../../mpl make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[4]: Nothing to be done for `install-exec-am'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making install in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in src make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' /usr/bin/make install-exec-hook make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[6]: Nothing to be done for `install-exec-hook'. make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making install in include make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in . make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' libtool: install: /usr/bin/install -c hydra_persist /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/hydra_persist libtool: install: /usr/bin/install -c hydra_nameserver /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/hydra_nameserver libtool: install: /usr/bin/install -c hydra_pmi_proxy /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/hydra_pmi_proxy libtool: install: /usr/bin/install -c mpiexec.hydra /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec.hydra /usr/bin/make install-exec-hook make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' if [ -x /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec.hydra ] ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpiexec.hydra mpiexec ; \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpiexec.hydra mpirun ; \ fi make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making install in . make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' libtool: install: /usr/bin/install -c lib/.libs/libmpi.so.12.0.4 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.so.12.0.4 libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpi.so.12.0.4 libmpi.so.12 || { rm -f libmpi.so.12 && ln -s libmpi.so.12.0.4 libmpi.so.12; }; }) libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpi.so.12.0.4 libmpi.so || { rm -f libmpi.so && ln -s libmpi.so.12.0.4 libmpi.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpi.lai /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.la libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3; /bin/bash /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/libtool --silent --tag FC --mode=relink gfortran -Isrc/binding/fortran/use_mpi -Jsrc/binding/fortran/use_mpi -fPIC -ffree-line-length-0 -g -O0 -version-info 12:4:0 -o lib/libmpifort.la -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo 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src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_base.lo lib/libmpi.la -lpthread ) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.so.12.0.4T /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.so.12.0.4 libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpifort.so.12.0.4 libmpifort.so.12 || { rm -f libmpifort.so.12 && ln -s libmpifort.so.12.0.4 libmpifort.so.12; }; }) libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpifort.so.12.0.4 libmpifort.so || { rm -f libmpifort.so && ln -s libmpifort.so.12.0.4 libmpifort.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.lai /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.la libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3; /bin/bash /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/libtool --silent --tag CXX --mode=relink g++ -g -fPIC -O0 -version-info 12:4:0 -o lib/libmpicxx.la -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib src/binding/cxx/initcxx.lo lib/libmpi.la -lpthread ) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.so.12.0.4T /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.so.12.0.4 libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpicxx.so.12.0.4 libmpicxx.so.12 || { rm -f libmpicxx.so.12 && ln -s libmpicxx.so.12.0.4 libmpicxx.so.12; }; }) libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpicxx.so.12.0.4 libmpicxx.so || { rm -f libmpicxx.so && ln -s libmpicxx.so.12.0.4 libmpicxx.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.lai /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.la libtool: install: /usr/bin/install -c lib/.libs/libmpi.a /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.a libtool: install: chmod 644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.a libtool: install: ranlib /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.a libtool: install: /usr/bin/install -c lib/.libs/libmpifort.a /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.a libtool: install: chmod 644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.a libtool: install: ranlib /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.a libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.a /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.a libtool: install: chmod 644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.a libtool: install: ranlib /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.a libtool: finish: PATH="/usr/lib/mutt:/home/tisaac/.local/bin:/usr/local/texlive/2015/bin/x86_64-linux:/home/tisaac/.bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/tisaac/.bin:/sbin" ldconfig -n /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c src/env/mpichversion src/env/mpivars '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' libtool: install: /usr/bin/install -c src/env/mpichversion /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpichversion libtool: install: /usr/bin/install -c src/env/mpivars /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpivars mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' /usr/bin/install -c src/env/mpicc src/env/parkill src/env/mpifort src/env/mpicxx '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' /usr/bin/make install-exec-hook make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' for e in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx \ /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif77 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpifort ; do \ if test -e ${e} ; then \ sed -e 's|__PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich|g' \ -e 's|__EXEC_PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich|g' \ -e 's|__SYSCONFDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/etc|g' \ -e 's|__INCLUDEDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include|g' \ -e 's|__LIBDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib|g' ${e} > ${e}.tmp ; \ /usr/bin/install -c ${e}.tmp ${e} ; \ rm -f ${e}.tmp ; \ fi ; \ done ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpicxx mpic++ ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpifort ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpifort mpif90 ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpifort -a ! -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif77 ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpifort mpif77 ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.so ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpi.so libmpl.so ; \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpi.so libopa.so ; \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpi.so libmpich.so ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.so ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpifort.so libfmpich.so ; \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpifort.so libmpichf90.so ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.so ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpicxx.so libmpichcxx.so ; fi make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' /usr/bin/install -c -m 644 hydra_nameserver.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/hydra_nameserver.1 /usr/bin/install -c -m 644 hydra_persist.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/hydra_persist.1 /usr/bin/install -c -m 644 hydra_pmi_proxy.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/hydra_pmi_proxy.1 /usr/bin/install -c -m 644 mpicc.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpicc.1 /usr/bin/install -c -m 644 mpicxx.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpicxx.1 /usr/bin/install -c -m 644 mpiexec.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpiexec.1 /usr/bin/install -c -m 644 mpif77.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpif77.1 /usr/bin/install -c -m 644 mpifort.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpifort.1 /usr/bin/install -c -m 644 MPI_Abort.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Abort.3 /usr/bin/install -c -m 644 MPI_Accumulate.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Accumulate.3 /usr/bin/install -c -m 644 MPI_Add_error_class.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Add_error_class.3 /usr/bin/install -c -m 644 MPI_Add_error_code.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Add_error_code.3 /usr/bin/install -c -m 644 MPI_Add_error_string.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Add_error_string.3 /usr/bin/install -c -m 644 MPI_Address.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Address.3 /usr/bin/install -c -m 644 MPI_Allgather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Allgather.3 /usr/bin/install -c -m 644 MPI_Allgatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Allgatherv.3 /usr/bin/install -c -m 644 MPI_Alloc_mem.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Alloc_mem.3 /usr/bin/install -c -m 644 MPI_Allreduce.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Allreduce.3 /usr/bin/install -c -m 644 MPI_Alltoall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Alltoall.3 /usr/bin/install -c -m 644 MPI_Alltoallv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Alltoallv.3 /usr/bin/install -c -m 644 MPI_Alltoallw.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Alltoallw.3 /usr/bin/install -c -m 644 MPI_Attr_delete.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Attr_delete.3 /usr/bin/install -c -m 644 MPI_Attr_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Attr_get.3 /usr/bin/install -c -m 644 MPI_Attr_put.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Attr_put.3 /usr/bin/install -c -m 644 MPI_Barrier.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Barrier.3 /usr/bin/install -c -m 644 MPI_Bcast.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Bcast.3 /usr/bin/install -c -m 644 MPI_Bsend.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Bsend.3 /usr/bin/install -c -m 644 MPI_Bsend_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Bsend_init.3 /usr/bin/install -c -m 644 MPI_Buffer_attach.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Buffer_attach.3 /usr/bin/install -c -m 644 MPI_Buffer_detach.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Buffer_detach.3 /usr/bin/install -c -m 644 MPI_Cancel.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cancel.3 /usr/bin/install -c -m 644 MPI_Cart_coords.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_coords.3 /usr/bin/install -c -m 644 MPI_Cart_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_create.3 /usr/bin/install -c -m 644 MPI_Cartdim_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cartdim_get.3 /usr/bin/install -c -m 644 MPI_Cart_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_get.3 /usr/bin/install -c -m 644 MPI_Cart_map.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_map.3 /usr/bin/install -c -m 644 MPI_Cart_rank.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_rank.3 /usr/bin/install -c -m 644 MPI_Cart_shift.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_shift.3 /usr/bin/install -c -m 644 MPI_Cart_sub.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_sub.3 /usr/bin/install -c -m 644 MPI_Close_port.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Close_port.3 /usr/bin/install -c -m 644 MPI_Comm_accept.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_accept.3 /usr/bin/install -c -m 644 MPI_Comm_call_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_compare.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_compare.3 /usr/bin/install -c -m 644 MPI_Comm_connect.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_connect.3 /usr/bin/install -c -m 644 MPI_Comm_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_create.3 /usr/bin/install -c -m 644 MPI_Comm_create_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_create_group.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_create_group.3 /usr/bin/install -c -m 644 MPI_Comm_create_keyval.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_create_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_delete_attr.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_delete_attr.3 /usr/bin/install -c -m 644 MPI_Comm_disconnect.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_disconnect.3 /usr/bin/install -c -m 644 MPI_Comm_dup.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_dup.3 /usr/bin/install -c -m 644 MPI_Comm_dup_with_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_dup_with_info.3 /usr/bin/install -c -m 644 MPI_Comm_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_free.3 /usr/bin/install -c -m 644 MPI_Comm_free_keyval.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_free_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_get_attr.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_get_attr.3 /usr/bin/install -c -m 644 MPI_Comm_get_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_get_info.3 /usr/bin/install -c -m 644 MPI_Comm_get_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_get_name.3 /usr/bin/install -c -m 644 MPI_Comm_get_parent.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_get_parent.3 /usr/bin/install -c -m 644 MPI_Comm_group.3 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-c -m 644 MPI_File_set_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_set_errhandler.3 /usr/bin/install -c -m 644 MPI_File_set_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_set_info.3 /usr/bin/install -c -m 644 MPI_File_set_size.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_set_size.3 /usr/bin/install -c -m 644 MPI_File_set_view.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_set_view.3 /usr/bin/install -c -m 644 MPI_File_sync.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_sync.3 /usr/bin/install -c -m 644 MPI_File_write.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write.3 /usr/bin/install -c -m 644 MPI_File_write_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_all.3 /usr/bin/install -c -m 644 MPI_File_write_all_begin.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_all_end.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_at.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_at.3 /usr/bin/install -c -m 644 MPI_File_write_at_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_at_all.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_begin.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_end.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_ordered.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_ordered.3 /usr/bin/install -c -m 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/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Gatherv.3 /usr/bin/install -c -m 644 MPI_Get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get.3 /usr/bin/install -c -m 644 MPI_Get_accumulate.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_accumulate.3 /usr/bin/install -c -m 644 MPI_Get_address.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_address.3 /usr/bin/install -c -m 644 MPI_Get_count.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_count.3 /usr/bin/install -c -m 644 MPI_Get_elements.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_elements.3 /usr/bin/install -c -m 644 MPI_Get_elements_x.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_elements_x.3 /usr/bin/install -c -m 644 MPI_Get_library_version.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_library_version.3 /usr/bin/install -c -m 644 MPI_Get_processor_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_processor_name.3 /usr/bin/install -c -m 644 MPI_Get_version.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_version.3 /usr/bin/install -c -m 644 MPI_Graph_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_create.3 /usr/bin/install -c -m 644 MPI_Graphdims_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graphdims_get.3 /usr/bin/install -c -m 644 MPI_Graph_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_get.3 /usr/bin/install -c -m 644 MPI_Graph_map.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_map.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors_count.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Grequest_complete.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Grequest_complete.3 /usr/bin/install -c -m 644 MPI_Grequest_start.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Grequest_start.3 /usr/bin/install -c -m 644 MPI_Group_compare.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_compare.3 /usr/bin/install -c -m 644 MPI_Group_difference.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_difference.3 /usr/bin/install -c -m 644 MPI_Group_excl.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_excl.3 /usr/bin/install -c -m 644 MPI_Group_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_free.3 /usr/bin/install -c -m 644 MPI_Group_incl.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_incl.3 /usr/bin/install -c -m 644 MPI_Group_intersection.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_intersection.3 /usr/bin/install -c -m 644 MPI_Group_range_excl.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_range_excl.3 /usr/bin/install -c -m 644 MPI_Group_range_incl.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_range_incl.3 /usr/bin/install -c -m 644 MPI_Group_rank.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_rank.3 /usr/bin/install -c -m 644 MPI_Group_size.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_size.3 /usr/bin/install -c -m 644 MPI_Group_translate_ranks.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_translate_ranks.3 /usr/bin/install -c -m 644 MPI_Group_union.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_union.3 /usr/bin/install -c -m 644 MPI_Iallgather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Iallgather.3 /usr/bin/install -c -m 644 MPI_Iallgatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Iallgatherv.3 /usr/bin/install -c -m 644 MPI_Iallreduce.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Iallreduce.3 /usr/bin/install -c -m 644 MPI_Ialltoall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ialltoall.3 /usr/bin/install -c -m 644 MPI_Ialltoallv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ialltoallv.3 /usr/bin/install -c -m 644 MPI_Ialltoallw.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ialltoallw.3 /usr/bin/install -c -m 644 MPI_Ibarrier.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ibarrier.3 /usr/bin/install -c -m 644 MPI_Ibcast.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ibcast.3 /usr/bin/install -c -m 644 MPI_Ibsend.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ibsend.3 /usr/bin/install -c -m 644 MPI_Iexscan.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Iexscan.3 /usr/bin/install -c -m 644 MPI_Igather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Igather.3 /usr/bin/install -c -m 644 MPI_Igatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Igatherv.3 /usr/bin/install -c -m 644 MPI_Improbe.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Improbe.3 /usr/bin/install -c -m 644 MPI_Imrecv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Imrecv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallw.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Info_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_create.3 /usr/bin/install -c -m 644 MPI_Info_delete.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_delete.3 /usr/bin/install -c -m 644 MPI_Info_dup.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_dup.3 /usr/bin/install -c -m 644 MPI_Info_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_free.3 /usr/bin/install -c -m 644 MPI_Info_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_get.3 /usr/bin/install -c -m 644 MPI_Info_get_nkeys.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_get_nkeys.3 /usr/bin/install -c -m 644 MPI_Info_get_nthkey.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_get_nthkey.3 /usr/bin/install -c -m 644 MPI_Info_get_valuelen.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_get_valuelen.3 /usr/bin/install -c -m 644 MPI_Info_set.3 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-c -m 644 MPI_Neighbor_allgather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallw.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Op_commute.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Op_commute.3 /usr/bin/install -c -m 644 MPI_Op_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Op_create.3 /usr/bin/install -c -m 644 MPI_Open_port.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Open_port.3 /usr/bin/install -c -m 644 MPI_Op_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Op_free.3 /usr/bin/install -c -m 644 MPI_Pack.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pack.3 /usr/bin/install -c -m 644 MPI_Pack_external.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pack_external.3 /usr/bin/install -c -m 644 MPI_Pack_external_size.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pack_external_size.3 /usr/bin/install -c -m 644 MPI_Pack_size.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pack_size.3 /usr/bin/install -c -m 644 MPI_Pcontrol.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pcontrol.3 /usr/bin/install -c -m 644 MPI_Probe.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Probe.3 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/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Reduce_local.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Reduce_scatter.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter_block.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Reduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Register_datarep.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Register_datarep.3 /usr/bin/install -c -m 644 MPI_Request_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Request_free.3 /usr/bin/install -c -m 644 MPI_Request_get_status.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Request_get_status.3 /usr/bin/install -c -m 644 MPI_Rget.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rget.3 /usr/bin/install -c -m 644 MPI_Rget_accumulate.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rget_accumulate.3 /usr/bin/install -c -m 644 MPI_Rput.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rput.3 /usr/bin/install -c -m 644 MPI_Rsend.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rsend.3 /usr/bin/install -c -m 644 MPI_Rsend_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rsend_init.3 /usr/bin/install -c -m 644 MPI_Scan.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Scan.3 /usr/bin/install -c -m 644 MPI_Scatter.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Scatter.3 /usr/bin/install -c -m 644 MPI_Scatterv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Scatterv.3 /usr/bin/install -c -m 644 MPI_Send.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Send.3 /usr/bin/install -c -m 644 MPI_Send_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Send_init.3 /usr/bin/install -c -m 644 MPI_Sendrecv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Sendrecv.3 /usr/bin/install -c -m 644 MPI_Sendrecv_replace.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Sendrecv_replace.3 /usr/bin/install -c -m 644 MPI_Ssend.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ssend.3 /usr/bin/install -c -m 644 MPI_Ssend_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ssend_init.3 /usr/bin/install -c -m 644 MPI_Start.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Start.3 /usr/bin/install -c -m 644 MPI_Startall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Startall.3 /usr/bin/install -c -m 644 MPI_Status_set_cancelled.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Status_set_cancelled.3 /usr/bin/install -c -m 644 MPI_Status_set_elements.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Status_set_elements.3 /usr/bin/install -c -m 644 MPI_Status_set_elements_x.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Status_set_elements_x.3 /usr/bin/install -c -m 644 MPI_T_category_changed.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_changed.3 /usr/bin/install -c -m 644 MPI_T_category_get_categories.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_categories.3 /usr/bin/install -c -m 644 MPI_T_category_get_cvars.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_cvars.3 /usr/bin/install -c -m 644 MPI_T_category_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_info.3 /usr/bin/install -c -m 644 MPI_T_category_get_num.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_num.3 /usr/bin/install -c -m 644 MPI_T_category_get_pvars.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_pvars.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_num.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_alloc.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_cvar_read.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_read.3 /usr/bin/install -c -m 644 MPI_T_cvar_write.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_write.3 /usr/bin/install -c -m 644 MPI_T_enum_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_enum_get_info.3 /usr/bin/install -c -m 644 MPI_T_enum_get_item.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_enum_get_item.3 /usr/bin/install -c -m 644 MPI_Test.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Test.3 /usr/bin/install -c -m 644 MPI_Testall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Testall.3 /usr/bin/install -c -m 644 MPI_Testany.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Testany.3 /usr/bin/install -c -m 644 MPI_Test_cancelled.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Test_cancelled.3 /usr/bin/install -c -m 644 MPI_Testsome.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Testsome.3 /usr/bin/install -c -m 644 MPI_T_finalize.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_finalize.3 /usr/bin/install -c -m 644 MPI_T_init_thread.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_init_thread.3 /usr/bin/install -c -m 644 MPI_Topo_test.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Topo_test.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_num.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_alloc.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_handle_free.3 /usr/bin/install -c -m 644 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/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_write.3 /usr/bin/install -c -m 644 MPI_Type_commit.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_commit.3 /usr/bin/install -c -m 644 MPI_Type_contiguous.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_contiguous.3 /usr/bin/install -c -m 644 MPI_Type_create_darray.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_create_darray.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_create_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed_block.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_create_hindexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_hvector.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_create_hvector.3 /usr/bin/install -c -m 644 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MPI_Type_get_extent_x.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_get_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_get_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_get_name.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_get_true_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent_x.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_get_true_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_hindexed.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_hvector.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_hvector.3 /usr/bin/install -c -m 644 MPI_Type_indexed.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_indexed.3 /usr/bin/install -c -m 644 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/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_ub.3 /usr/bin/install -c -m 644 MPI_Type_vector.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Type_vector.3 /usr/bin/install -c -m 644 MPI_Unpack.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Unpack.3 /usr/bin/install -c -m 644 MPI_Unpack_external.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Unpack_external.3 /usr/bin/install -c -m 644 MPI_Unpublish_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Unpublish_name.3 /usr/bin/install -c -m 644 MPI_Wait.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Wait.3 /usr/bin/install -c -m 644 MPI_Waitall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Waitall.3 /usr/bin/install -c -m 644 MPI_Waitany.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Waitany.3 /usr/bin/install -c -m 644 MPI_Waitsome.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Waitsome.3 /usr/bin/install -c -m 644 MPI_Win_allocate.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_allocate.3 /usr/bin/install -c -m 644 MPI_Win_allocate_shared.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_allocate_shared.3 /usr/bin/install -c -m 644 MPI_Win_attach.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_attach.3 /usr/bin/install -c -m 644 MPI_Win_call_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_complete.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_complete.3 /usr/bin/install -c -m 644 MPI_Win_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_create.3 /usr/bin/install -c -m 644 MPI_Win_create_dynamic.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_create_dynamic.3 /usr/bin/install -c -m 644 MPI_Win_create_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_create_keyval.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_create_keyval.3 /usr/bin/install -c -m 644 MPI_Win_delete_attr.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_delete_attr.3 /usr/bin/install -c -m 644 MPI_Win_detach.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_detach.3 /usr/bin/install -c -m 644 MPI_Win_fence.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_fence.3 /usr/bin/install -c -m 644 MPI_Win_flush.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_flush.3 /usr/bin/install -c -m 644 MPI_Win_flush_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_flush_all.3 /usr/bin/install -c -m 644 MPI_Win_flush_local.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_flush_local.3 /usr/bin/install -c -m 644 MPI_Win_flush_local_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_flush_local_all.3 /usr/bin/install -c -m 644 MPI_Win_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_free.3 /usr/bin/install -c -m 644 MPI_Win_free_keyval.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_free_keyval.3 /usr/bin/install -c -m 644 MPI_Win_get_attr.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_get_attr.3 /usr/bin/install -c -m 644 MPI_Win_get_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_get_group.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_get_group.3 /usr/bin/install -c -m 644 MPI_Win_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_get_info.3 /usr/bin/install -c -m 644 MPI_Win_get_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_get_name.3 /usr/bin/install -c -m 644 MPI_Win_lock.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_lock.3 /usr/bin/install -c -m 644 MPI_Win_lock_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_lock_all.3 /usr/bin/install -c -m 644 MPI_Win_post.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_post.3 /usr/bin/install -c -m 644 MPI_Win_set_attr.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_set_attr.3 /usr/bin/install -c -m 644 MPI_Win_set_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_set_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_set_info.3 /usr/bin/install -c -m 644 MPI_Win_set_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_set_name.3 /usr/bin/install -c -m 644 MPI_Win_shared_query.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_shared_query.3 /usr/bin/install -c -m 644 MPI_Win_start.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_start.3 /usr/bin/install -c -m 644 MPI_Win_sync.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_sync.3 /usr/bin/install -c -m 644 MPI_Win_test.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_test.3 /usr/bin/install -c -m 644 MPI_Win_unlock.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_unlock.3 /usr/bin/install -c -m 644 MPI_Win_unlock_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_unlock_all.3 /usr/bin/install -c -m 644 MPI_Win_wait.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_wait.3 /usr/bin/install -c -m 644 MPI_Wtick.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Wtick.3 /usr/bin/install -c -m 644 MPI_Wtime.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Wtime.3 /usr/bin/install -c -m 644 MPIX_Comm_agree.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_agree.3 /usr/bin/install -c -m 644 MPIX_Comm_failure_ack.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_failure_ack.3 /usr/bin/install -c -m 644 MPIX_Comm_failure_get_acked.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_failure_get_acked.3 /usr/bin/install -c -m 644 MPIX_Comm_revoke.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_revoke.3 /usr/bin/install -c -m 644 MPIX_Comm_shrink.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_shrink.3 if [ ! -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich ] ; then mkdir -p /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich ; fi if [ -s ./doc/userguide/user.pdf ] ; then /usr/bin/install -c -m 644 ./doc/userguide/user.pdf /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich/user.pdf ; fi if [ -s ./doc/installguide/install.pdf ] ; then /usr/bin/install -c -m 644 ./doc/installguide/install.pdf /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich/install.pdf ; fi if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich/logging.pdf ; fi mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/fortran/mpif_h/mpif.h src/include/mpi.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/pkgconfig' /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/pkgconfig' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making install in examples make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' ********Output of running make on MPICH follows ******* Configuring MPICH version 3.1.3 with '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' Running on system: Linux alembic 3.2.0-115-generic #157-Ubuntu SMP Tue Oct 25 16:32:19 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no checking for getpagesize... yes checking for getpagesize... (cached) yes configure: RUNNING PREREQ FOR ch3:sock configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC ' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g ' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g ' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... yes checking valgrind/valgrind.h presence... yes checking for valgrind/valgrind.h... yes checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... yes checking valgrind/helgrind.h presence... yes checking for valgrind/helgrind.h... yes checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... yes checking valgrind/drd.h presence... yes checking for valgrind/drd.h... yes checking whether the valgrind headers are broken or too old... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC ' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g ' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g ' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines configure: ===== done with src/openpa configure ===== sourcing /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O0... yes checking whether C compiler option -O0 works with an invalid prototype program... yes checking whether routines compiled with -O0 can be linked with ones compiled without -O0... yes checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O0... yes checking whether routines compiled with -O0 can be linked with ones compiled without -O0... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lgfortran -lm -lquadmath checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... 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VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... yes checking for C type matching Fortran real... float checking for C type matching Fortran double... double checking for C type matching Fortran integer... int checking for values of Fortran logicals... True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for gcc __asm__ and pentium cmpxchgl instruction... no checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes checking for gcc __asm__ and IA64 xchg4 instruction... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... 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(cached) yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for qsort... yes checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking size of MPIR_Bsend_data_t... 96 checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking whether pthread_mutexattr_settype needs a declaration... no checking for thread local storage specifier... __thread checking for getpid... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking for sched_setaffinity... yes checking for sched_getaffinity... yes checking for bindprocessor... no checking for thread_policy_set... no checking whether cpu_set_t available... yes checking whether the CPU_SET and CPU_ZERO macros are defined... no configure: RUNNING CONFIGURE FOR F90 CODE checking whether ln -s works... yes checking for extension for Fortran 90 programs... f90 checking for the precision and range of reals... 6 , 37 checking for the precision and range of double precision... 15 , 307 checking for the range of integer... 9 checking for available integer kinds... 2 , 1, 4 , 2, 9 , 4, 18 , 8, checking for available integer ranges... { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... no checking uuid/uuid.h presence... no checking for uuid/uuid.h... no checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:sock checking for net/if.h... yes checking for netdb.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking for netinet/in.h... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock checking for strerror... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock/poll checking for poll... yes checking for assert.h... (cached) yes checking for errno.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for limits.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for netinet/tcp.h... (cached) yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for stdlib.h... (cached) yes checking for sys/param.h... (cached) yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for unistd.h... (cached) yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking for library containing socket... (cached) none required checking for library containing gethostbyname... (cached) none required checking whether socklen_t is defined (in sys/socket.h if present)... (cached) yes configure: RUNNING CONFIGURE FOR CH3U SOCK CODE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for time.h... (cached) yes checking for ctype.h... (cached) yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... (cached) yes checking for pid_t... (cached) yes checking for inet_pton... (cached) yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking whether we can use struct ifconf... yes configure: ===== configuring src/mpid/common/sock ===== configure: ===== done with src/mpid/common/sock configure ===== configure: ===== configuring src/mpi/romio ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3 -O0' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC -O0' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O0' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O0' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... LINUX ROMIO home directory is /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long... yes checking size of long long... 8 checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for off_t... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for mpix.h... no checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... (cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking gpfs.h usability... no checking gpfs.h presence... no checking for gpfs.h... no checking gpfs_fcntl.h usability... no checking gpfs_fcntl.h presence... no checking for gpfs_fcntl.h... no checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... 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(cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for usleep... yes checking whether usleep needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpifort setting CFLAGS to -fPIC -g3 -O0 -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3 -O0' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC -O0' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O0' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O0' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking whether /usr/bin/make supports nested variables... (cached) yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... 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(cached) yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 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(cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/src/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 20 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 16 checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32 configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/binding/fortran/use_mpi/mpif90model.h config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/include/mpichtimer.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich' 'MAKE=/usr/bin/make' '--libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' 'CC=gcc' 'CFLAGS=-fPIC -g3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-g -fPIC' 'F77=gfortran' 'FFLAGS=-fPIC -ffree-line-length-0 -g' 'FC=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-fast=no' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (/usr/bin/ar) interface... ar checking for grep that handles long lines and -e... /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lpthread -lgfortran -lm -lquadmath checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g ) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating 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creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/util/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands Configuration completed.configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. configure: WARNING: no configuration information is in src/mpid/common/sock configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS configure: WARNING: The ch3:sock device did not set the maximum size of an error string, 512 being used. config.status: WARNING: 'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting Making clean in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' rm -f strsep rm -rf .libs _libs rm -rf src/.libs src/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making clean in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making clean in src make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' rm -rf .libs _libs test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' Making clean in test make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o test -z "sanity.log test_primitives.log test_barriers.log test_queue.log" || rm -f sanity.log test_primitives.log test_barriers.log test_queue.log test -z "sanity.trs test_primitives.trs test_barriers.trs test_queue.trs" || rm -f sanity.trs test_primitives.trs test_barriers.trs test_queue.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making clean in src/mpi/romio make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' test -z "" || rm -f rm -rf .libs _libs rm -rf adio/ad_gpfs/.libs adio/ad_gpfs/_libs rm -rf adio/ad_gpfs/bg/.libs adio/ad_gpfs/bg/_libs rm -rf adio/ad_gpfs/pe/.libs adio/ad_gpfs/pe/_libs rm -rf adio/ad_gridftp/.libs adio/ad_gridftp/_libs rm -rf adio/ad_hfs/.libs adio/ad_hfs/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pfs/.libs adio/ad_pfs/_libs rm -rf adio/ad_piofs/.libs adio/ad_piofs/_libs rm -rf adio/ad_pvfs/.libs adio/ad_pvfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_sfs/.libs adio/ad_sfs/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/ad_zoidfs/.libs adio/ad_zoidfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/.libs mpi-io/glue/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la " || rm -f libromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_gpfs/*.o rm -f adio/ad_gpfs/*.lo rm -f adio/ad_gpfs/bg/*.o rm -f adio/ad_gpfs/bg/*.lo rm -f adio/ad_gpfs/pe/*.o rm -f adio/ad_gpfs/pe/*.lo rm -f adio/ad_gridftp/*.o rm -f adio/ad_gridftp/*.lo rm -f adio/ad_hfs/*.o rm -f adio/ad_hfs/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pfs/*.o rm -f adio/ad_pfs/*.lo rm -f adio/ad_piofs/*.o rm -f adio/ad_piofs/*.lo rm -f adio/ad_pvfs/*.o rm -f adio/ad_pvfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_sfs/*.o rm -f adio/ad_sfs/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/ad_zoidfs/*.o rm -f adio/ad_zoidfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/*.o rm -f mpi-io/glue/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' Making clean in src/pm/hydra make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making clean in ../../mpl make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' rm -f strsep rm -rf .libs _libs rm -rf src/.libs src/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making clean in tools/topo/hwloc/hwloc make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in src make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making clean in include make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs rm -rf pm/pmiserv/.libs pm/pmiserv/_libs rm -rf tools/bootstrap/external/.libs tools/bootstrap/external/_libs rm -rf tools/bootstrap/persist/.libs tools/bootstrap/persist/_libs rm -rf tools/bootstrap/src/.libs tools/bootstrap/src/_libs rm -rf tools/bootstrap/utils/.libs tools/bootstrap/utils/_libs rm -rf tools/ckpoint/.libs tools/ckpoint/_libs rm -rf tools/ckpoint/blcr/.libs tools/ckpoint/blcr/_libs rm -rf tools/debugger/.libs tools/debugger/_libs rm -rf tools/demux/.libs tools/demux/_libs rm -rf tools/ftb/.libs tools/ftb/_libs rm -rf tools/topo/.libs tools/topo/_libs rm -rf tools/topo/hwloc/.libs tools/topo/hwloc/_libs rm -rf ui/utils/.libs ui/utils/_libs rm -rf utils/alloc/.libs utils/alloc/_libs rm -rf utils/args/.libs utils/args/_libs rm -rf utils/dbg/.libs utils/dbg/_libs rm -rf utils/env/.libs utils/env/_libs rm -rf utils/launch/.libs utils/launch/_libs rm -rf utils/others/.libs utils/others/_libs rm -rf utils/signals/.libs utils/signals/_libs rm -rf utils/sock/.libs utils/sock/_libs rm -rf utils/string/.libs utils/string/_libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f pm/pmiserv/*.o rm -f pm/pmiserv/*.lo rm -f tools/bootstrap/external/*.o rm -f tools/bootstrap/external/*.lo rm -f tools/bootstrap/persist/*.o rm -f tools/bootstrap/persist/*.lo rm -f tools/bootstrap/src/*.o rm -f tools/bootstrap/src/*.lo rm -f tools/bootstrap/utils/*.o rm -f tools/bootstrap/utils/*.lo rm -f tools/ckpoint/*.o rm -f tools/ckpoint/*.lo rm -f tools/ckpoint/blcr/*.o rm -f tools/ckpoint/blcr/*.lo rm -f tools/debugger/*.o rm -f tools/debugger/*.lo rm -f tools/demux/*.o rm -f tools/demux/*.lo rm -f tools/ftb/*.o rm -f tools/ftb/*.lo rm -f tools/nameserver/*.o rm -f tools/topo/*.o rm -f tools/topo/*.lo rm -f tools/topo/hwloc/*.o rm -f tools/topo/hwloc/*.lo rm -f ui/mpich/*.o rm -f ui/utils/*.o rm -f ui/utils/*.lo rm -f utils/alloc/*.o rm -f utils/alloc/*.lo rm -f utils/args/*.o rm -f utils/args/*.lo rm -f utils/dbg/*.o rm -f utils/dbg/*.lo rm -f utils/env/*.o rm -f utils/env/*.lo rm -f utils/launch/*.o rm -f utils/launch/*.lo rm -f utils/others/*.o rm -f utils/others/*.lo rm -f utils/signals/*.o rm -f utils/signals/*.lo rm -f utils/sock/*.o rm -f utils/sock/*.lo rm -f utils/string/*.o rm -f utils/string/*.lo rm -f *.lo make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making clean in . make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' rm -f src/env/mpichversion src/env/mpivars test -z "src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod " || rm -f src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod test -z " lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la" || rm -f lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/fortran/mpif_h/.libs src/binding/fortran/mpif_h/_libs rm -rf src/binding/fortran/use_mpi/.libs src/binding/fortran/use_mpi/_libs rm -rf src/binding/fortran/use_mpi_f08/.libs src/binding/fortran/use_mpi_f08/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_c/.libs src/binding/fortran/use_mpi_f08/wrappers_c/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/.libs src/binding/fortran/use_mpi_f08/wrappers_f/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/profiling/.libs src/binding/fortran/use_mpi_f08/wrappers_f/profiling/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/ib/.libs src/mpid/ch3/channels/nemesis/netmod/ib/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mx/.libs src/mpid/ch3/channels/nemesis/netmod/mx/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mxm/.libs src/mpid/ch3/channels/nemesis/netmod/mxm/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/newmad/.libs src/mpid/ch3/channels/nemesis/netmod/newmad/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/scif/.libs src/mpid/ch3/channels/nemesis/netmod/scif/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/common/datatype/.libs src/mpid/common/datatype/_libs rm -rf src/mpid/common/datatype/dataloop/.libs src/mpid/common/datatype/dataloop/_libs rm -rf src/mpid/common/hcoll/.libs src/mpid/common/hcoll/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/sock/poll/.libs src/mpid/common/sock/poll/_libs rm -rf src/mpid/common/thread/.libs src/mpid/common/thread/_libs rm -rf src/mpid/pamid/src/.libs src/mpid/pamid/src/_libs rm -rf src/mpid/pamid/src/coll/.libs src/mpid/pamid/src/coll/_libs rm -rf src/mpid/pamid/src/coll/allgather/.libs src/mpid/pamid/src/coll/allgather/_libs rm -rf src/mpid/pamid/src/coll/allgatherv/.libs src/mpid/pamid/src/coll/allgatherv/_libs rm -rf src/mpid/pamid/src/coll/allreduce/.libs src/mpid/pamid/src/coll/allreduce/_libs rm -rf src/mpid/pamid/src/coll/alltoall/.libs src/mpid/pamid/src/coll/alltoall/_libs rm -rf src/mpid/pamid/src/coll/alltoallv/.libs src/mpid/pamid/src/coll/alltoallv/_libs rm -rf src/mpid/pamid/src/coll/alltoallw/.libs src/mpid/pamid/src/coll/alltoallw/_libs rm -rf src/mpid/pamid/src/coll/barrier/.libs src/mpid/pamid/src/coll/barrier/_libs rm -rf src/mpid/pamid/src/coll/bcast/.libs src/mpid/pamid/src/coll/bcast/_libs rm -rf src/mpid/pamid/src/coll/exscan/.libs src/mpid/pamid/src/coll/exscan/_libs rm -rf src/mpid/pamid/src/coll/gather/.libs src/mpid/pamid/src/coll/gather/_libs rm -rf src/mpid/pamid/src/coll/gatherv/.libs src/mpid/pamid/src/coll/gatherv/_libs rm -rf src/mpid/pamid/src/coll/ired_scat/.libs src/mpid/pamid/src/coll/ired_scat/_libs rm -rf src/mpid/pamid/src/coll/ired_scat_block/.libs src/mpid/pamid/src/coll/ired_scat_block/_libs rm -rf src/mpid/pamid/src/coll/reduce/.libs src/mpid/pamid/src/coll/reduce/_libs rm -rf src/mpid/pamid/src/coll/scan/.libs src/mpid/pamid/src/coll/scan/_libs rm -rf src/mpid/pamid/src/coll/scatter/.libs src/mpid/pamid/src/coll/scatter/_libs rm -rf src/mpid/pamid/src/coll/scatterv/.libs src/mpid/pamid/src/coll/scatterv/_libs rm -rf src/mpid/pamid/src/comm/.libs src/mpid/pamid/src/comm/_libs rm -rf src/mpid/pamid/src/dyntask/.libs src/mpid/pamid/src/dyntask/_libs rm -rf src/mpid/pamid/src/misc/.libs src/mpid/pamid/src/misc/_libs rm -rf src/mpid/pamid/src/mpix/.libs src/mpid/pamid/src/mpix/_libs rm -rf src/mpid/pamid/src/onesided/.libs src/mpid/pamid/src/onesided/_libs rm -rf src/mpid/pamid/src/pamix/.libs src/mpid/pamid/src/pamix/_libs rm -rf src/mpid/pamid/src/pt2pt/.libs src/mpid/pamid/src/pt2pt/_libs rm -rf src/mpid/pamid/src/pt2pt/persistent/.libs src/mpid/pamid/src/pt2pt/persistent/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pmi/pmi2/poe/.libs src/pmi/pmi2/poe/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/util/cvar/.libs src/util/cvar/_libs rm -rf src/util/dbg/.libs src/util/dbg/_libs rm -rf src/util/instrm/.libs src/util/instrm/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/msgs/.libs src/util/msgs/_libs rm -rf src/util/other/.libs src/util/other/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs rm -rf src/util/thread/.libs src/util/thread/_libs ( cd test && /usr/bin/make clean ) make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test' Making clean in mpi make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi' Making clean in util make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/util' rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/util' Making clean in attr make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/attr' Making clean in basic make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/basic' Making clean in datatype make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types dataalign darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents hvecblklen indexed-misc large-count large_type large_type_sendrec lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent sendrecvt2 sendrecvt4 simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack structpack2 struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs vecblklen zeroblks zeroparms" || rm -f blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types dataalign darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents hvecblklen indexed-misc large-count large_type large_type_sendrec lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent sendrecvt2 sendrecvt4 simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack structpack2 struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs vecblklen zeroblks zeroparms rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/datatype' Making clean in coll make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 nonblocking4 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 nonblocking4 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/coll' Making clean in comm make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_idup_mul comm_idup_overlap comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_idup_mul comm_idup_overlap comm_info rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/comm' Making clean in errhan make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errhan' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "adderr commcall errfatal predef_eh errstring2" || rm -f adderr commcall errfatal predef_eh errstring2 rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errhan' Making clean in group make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/group' Making clean in info make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/info' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoenv rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/info' Making clean in init make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/init' Making clean in pt2pt make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/pt2pt' Making clean in rma make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allocmem ircpi test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma-contig badrma nb_test acc-loc fence_shm get-struct at_complete" || rm -f allocmem ircpi test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma-contig badrma nb_test acc-loc fence_shm get-struct at_complete rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/rma' Making clean in topo make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/topo' Making clean in errors make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors' Making clean in attr make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "keyvalmis" || rm -f keyvalmis rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/attr' Making clean in coll make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "noalias rerr bcastlength reduce_local" || rm -f noalias rerr bcastlength reduce_local rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/coll' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/comm' Making clean in datatype make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "getcnterr" || rm -f getcnterr rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/datatype' Making clean in group make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "gerr" || rm -f gerr rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/group' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/pt2pt' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/rma' Making clean in topo make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartsmall" || rm -f cartsmall rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/topo' Making clean in basic make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/basic' Making clean in faults make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/faults' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/faults' Making clean in io make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "fileerrret openerr" || rm -f fileerrret openerr rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/io' Making clean in f77 make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77' Making clean in io make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77/io' make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f77' Making clean in f90 make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90' Making clean in io make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90/io' make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/f90' Making clean in cxx make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx' Making clean in io make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx/io' Making clean in errhan make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx/errhan' make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/cxx' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "badport unpub lookup_name" || rm -f badport unpub lookup_name rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors/spawn' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/errors' Making clean in manual make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual' Making clean in mpi_t make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual/mpi_t' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual' test -z "summary.xml summary.tap summary.junit.xml test-port" || rm -f summary.xml summary.tap summary.junit.xml test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/manual' Making clean in perf make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/perf' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/perf' Making clean in mpi_t make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpi_t_str mpit_vars cvarwrite" || rm -f mpi_t_str mpit_vars cvarwrite rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/mpi_t' Making clean in impls make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls' Making clean in mpich make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich' Making clean in mpi_t make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "collparmt" || rm -f collparmt rm -f *.o make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich/mpi_t' make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls/mpich' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/impls' Making clean in ckpoint make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ckpoint' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "write_ckpoint" || rm -f write_ckpoint rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ckpoint' Making clean in ft make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ft' Making clean in io make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/io' Making clean in f77 make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77' Making clean in util make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/util' rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/util' Making clean in attr make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/attr' Making clean in datatype make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/datatype' Making clean in coll make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/coll' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf statusesf greqf mprobef" || rm -f allpairf statusesf greqf mprobef rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/pt2pt' Making clean in info make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/info' Making clean in init make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/init' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/comm' Making clean in topo make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/topo' Making clean in ext make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/ext' Making clean in profile make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f" || rm -f profile1f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/profile' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/spawn' Making clean in io make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/io' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77/rma' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f77' Making clean in f90 make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90' Making clean in util make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/util' rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/util' Making clean in timer make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/timer' Making clean in attr make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/attr' Making clean in coll make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/coll' Making clean in datatype make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/datatype' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf90 statusesf90 greqf90 mprobef90" || rm -f allpairf90 statusesf90 greqf90 mprobef90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/pt2pt' Making clean in info make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/info' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/comm' Making clean in topo make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/topo' Making clean in ext make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/ext' Making clean in init make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/init' Making clean in misc make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/misc' Making clean in f90types make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/f90types' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "createf90types" || rm -f createf90types rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/f90types' Making clean in profile make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f90" || rm -f profile1f90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/profile' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/rma' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/spawn' Making clean in io make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90/io' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/f90' Making clean in cxx make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx' Making clean in util make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/util' rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/util' Making clean in attr make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/attr' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/pt2pt' Making clean in init make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/init' Making clean in info make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/info' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/comm' Making clean in coll make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk" || rm -f arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/coll' Making clean in datatype make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "packsizex typecntsx typenamex typemiscx" || rm -f packsizex typecntsx typenamex typemiscx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/datatype' Making clean in errhan make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/errhan' Making clean in topo make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/topo' Making clean in io make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/io' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/rma' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx/spawn' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/cxx' Making clean in threads make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads' Making clean in util make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/util' rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/util' Making clean in pt2pt make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/pt2pt' Making clean in comm make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_idup ctxidup" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_idup ctxidup rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/comm' Making clean in init make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "initth" || rm -f initth rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/init' Making clean in mpi_t make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_threading" || rm -f mpit_threading rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/mpi_t' Making clean in spawn make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/spawn' Making clean in rma make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multirma multiget" || rm -f multirma multiget rm -f *.o make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads/rma' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/threads' Making clean in spawn make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/spawn' Making clean in ft make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive rm -f *.o make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi/ft' Making clean in . make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/mpi' Making clean in commands make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test/commands' Making clean in . make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/test' test -z "" || rm -f test -z "" || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/fortran/mpif_h/*.o rm -f src/binding/fortran/mpif_h/*.lo rm -f src/binding/fortran/use_mpi/*.o rm -f src/binding/fortran/use_mpi/*.lo rm -f src/binding/fortran/use_mpi_f08/*.o rm -f src/binding/fortran/use_mpi_f08/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/ib/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/ib/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/common/datatype/*.o rm -f src/mpid/common/datatype/*.lo rm -f src/mpid/common/datatype/dataloop/*.o rm -f src/mpid/common/datatype/dataloop/*.lo rm -f src/mpid/common/hcoll/*.o rm -f src/mpid/common/hcoll/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/sock/poll/*.o rm -f src/mpid/common/sock/poll/*.lo rm -f src/mpid/common/thread/*.o rm -f src/mpid/common/thread/*.lo rm -f src/mpid/pamid/src/*.o rm -f src/mpid/pamid/src/*.lo rm -f src/mpid/pamid/src/coll/*.o rm -f src/mpid/pamid/src/coll/*.lo rm -f src/mpid/pamid/src/coll/allgather/*.o rm -f src/mpid/pamid/src/coll/allgather/*.lo rm -f src/mpid/pamid/src/coll/allgatherv/*.o rm -f src/mpid/pamid/src/coll/allgatherv/*.lo rm -f src/mpid/pamid/src/coll/allreduce/*.o rm -f src/mpid/pamid/src/coll/allreduce/*.lo rm -f src/mpid/pamid/src/coll/alltoall/*.o rm -f src/mpid/pamid/src/coll/alltoall/*.lo rm -f src/mpid/pamid/src/coll/alltoallv/*.o rm -f src/mpid/pamid/src/coll/alltoallv/*.lo rm -f src/mpid/pamid/src/coll/alltoallw/*.o rm -f src/mpid/pamid/src/coll/alltoallw/*.lo rm -f src/mpid/pamid/src/coll/barrier/*.o rm -f src/mpid/pamid/src/coll/barrier/*.lo rm -f src/mpid/pamid/src/coll/bcast/*.o rm -f src/mpid/pamid/src/coll/bcast/*.lo rm -f src/mpid/pamid/src/coll/exscan/*.o rm -f src/mpid/pamid/src/coll/exscan/*.lo rm -f src/mpid/pamid/src/coll/gather/*.o rm -f src/mpid/pamid/src/coll/gather/*.lo rm -f src/mpid/pamid/src/coll/gatherv/*.o rm -f src/mpid/pamid/src/coll/gatherv/*.lo rm -f src/mpid/pamid/src/coll/ired_scat/*.o rm -f src/mpid/pamid/src/coll/ired_scat/*.lo rm -f src/mpid/pamid/src/coll/ired_scat_block/*.o rm -f src/mpid/pamid/src/coll/ired_scat_block/*.lo rm -f src/mpid/pamid/src/coll/reduce/*.o rm -f src/mpid/pamid/src/coll/reduce/*.lo rm -f src/mpid/pamid/src/coll/scan/*.o rm -f src/mpid/pamid/src/coll/scan/*.lo rm -f src/mpid/pamid/src/coll/scatter/*.o rm -f src/mpid/pamid/src/coll/scatter/*.lo rm -f src/mpid/pamid/src/coll/scatterv/*.o rm -f src/mpid/pamid/src/coll/scatterv/*.lo rm -f src/mpid/pamid/src/comm/*.o rm -f src/mpid/pamid/src/comm/*.lo rm -f src/mpid/pamid/src/dyntask/*.o rm -f src/mpid/pamid/src/dyntask/*.lo rm -f src/mpid/pamid/src/misc/*.o rm -f src/mpid/pamid/src/misc/*.lo rm -f src/mpid/pamid/src/mpix/*.o rm -f src/mpid/pamid/src/mpix/*.lo rm -f src/mpid/pamid/src/onesided/*.o rm -f src/mpid/pamid/src/onesided/*.lo rm -f src/mpid/pamid/src/pamix/*.o rm -f src/mpid/pamid/src/pamix/*.lo rm -f src/mpid/pamid/src/pt2pt/*.o rm -f src/mpid/pamid/src/pt2pt/*.lo rm -f src/mpid/pamid/src/pt2pt/persistent/*.o rm -f src/mpid/pamid/src/pt2pt/persistent/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/util/*.o rm -f src/pmi/pmi2/poe/*.o rm -f src/pmi/pmi2/poe/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/util/cvar/*.o rm -f src/util/cvar/*.lo rm -f src/util/dbg/*.o rm -f src/util/dbg/*.lo rm -f src/util/instrm/*.o rm -f src/util/instrm/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/msgs/*.o rm -f src/util/msgs/*.lo rm -f src/util/other/*.o rm -f src/util/other/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f src/util/thread/*.o rm -f src/util/thread/*.lo rm -f *.lo make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making clean in examples make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples'if test ! -h ./src/include/mpio.h ; then \ rm -f ./src/include/mpio.h ; \ ( cd ./src/include && \ ln -s ../mpi/romio/include/mpio.h ) ; \ fi /usr/bin/make all-recursive make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making all in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' CC src/mplstr.lo CC src/mpltrmem.lo CC src/mplenv.lo CC src/mplsock.lo CCLD libmpl.la make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making all in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making all in src make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' /usr/bin/make all-am make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' Making all in test make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making all in src/mpi/romio make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC mpi-io/close.lo CC mpi-io/file_c2f.lo CC mpi-io/delete.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atallb.lo CC mpi-io/rd_atalle.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_set_view.lo CC adio/common/ad_subarray.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap-sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CC adio/common/hint_fns.lo CC adio/common/ad_threaded_io.lo CC adio/common/p2p_aggregation.lo CC adio/common/utils.lo CCLD libromio.la make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' Making all in src/pm/hydra make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making all in ../../mpl make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making all in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in src make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-xml-libxml.lo CC topology-linux.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making all in include make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' CC tools/bootstrap/persist/hydra_persist-persist_server.o CC utils/alloc/alloc.lo CC utils/args/args.lo CC utils/dbg/dbg.lo CC utils/env/env.lo CC utils/launch/launch.lo CC utils/others/others.lo CC utils/signals/signals.lo CC utils/sock/sock.lo CC utils/string/string.lo CC tools/topo/topo.lo CC tools/topo/hwloc/topo_hwloc.lo CC tools/bootstrap/src/bsci_init.lo CC tools/bootstrap/src/bsci_finalize.lo CC tools/bootstrap/src/bsci_launch.lo CC tools/bootstrap/src/bsci_query_node_list.lo CC tools/bootstrap/src/bsci_query_proxy_id.lo CC tools/bootstrap/src/bsci_query_native_int.lo CC tools/bootstrap/src/bsci_wait.lo CC tools/bootstrap/src/bsci_env.lo CC tools/bootstrap/utils/bscu_wait.lo CC tools/bootstrap/utils/bscu_cb.lo CC tools/bootstrap/external/external_common.lo CC tools/bootstrap/external/external_common_launch.lo CC tools/bootstrap/external/fork_init.lo CC tools/bootstrap/external/user_init.lo CC tools/bootstrap/external/manual_init.lo CC tools/bootstrap/external/rsh_init.lo CC tools/bootstrap/external/rsh_env.lo CC tools/bootstrap/external/ssh_init.lo CC tools/bootstrap/external/ssh.lo CC tools/bootstrap/external/ssh_env.lo CC tools/bootstrap/external/ssh_finalize.lo CC tools/bootstrap/external/slurm_init.lo CC tools/bootstrap/external/slurm_launch.lo CC tools/bootstrap/external/slurm_env.lo CC tools/bootstrap/external/slurm_query_native_int.lo CC tools/bootstrap/external/slurm_query_node_list.lo CC tools/bootstrap/external/slurm_query_proxy_id.lo CC tools/bootstrap/external/ll_init.lo CC tools/bootstrap/external/ll_launch.lo CC tools/bootstrap/external/ll_query_native_int.lo CC tools/bootstrap/external/ll_query_node_list.lo CC tools/bootstrap/external/ll_query_proxy_id.lo CC tools/bootstrap/external/ll_env.lo CC tools/bootstrap/external/lsf_init.lo CC tools/bootstrap/external/lsf_query_native_int.lo CC tools/bootstrap/external/lsf_query_node_list.lo CC tools/bootstrap/external/lsf_env.lo CC tools/bootstrap/external/sge_init.lo CC tools/bootstrap/external/sge_query_native_int.lo CC tools/bootstrap/external/sge_query_node_list.lo CC tools/bootstrap/external/sge_env.lo CC tools/bootstrap/external/pbs_init.lo CC tools/bootstrap/external/pbs_query_native_int.lo CC tools/bootstrap/external/pbs_query_node_list.lo CC tools/bootstrap/external/cobalt_init.lo CC tools/bootstrap/external/cobalt_query_native_int.lo CC tools/bootstrap/external/cobalt_query_node_list.lo CC tools/bootstrap/persist/persist_init.lo CC tools/bootstrap/persist/persist_launch.lo CC tools/bootstrap/persist/persist_wait.lo CC tools/ckpoint/ckpoint.lo CC tools/demux/demux.lo CC tools/demux/demux_poll.lo CC tools/demux/demux_select.lo CC tools/debugger/debugger.lo CC tools/ftb/hydt_ftb_dummy.lo CC ui/utils/uiu.lo CC pm/pmiserv/pmiserv_pmi.lo CC pm/pmiserv/pmiserv_pmi_v1.lo CC pm/pmiserv/pmiserv_pmi_v2.lo CC pm/pmiserv/pmiserv_pmci.lo CC pm/pmiserv/pmiserv_cb.lo CC pm/pmiserv/pmiserv_utils.lo CC pm/pmiserv/common.lo CC pm/pmiserv/pmi_v2_common.lo CC tools/nameserver/hydra_nameserver-hydra_nameserver.o CC pm/pmiserv/hydra_pmi_proxy-pmip.o CC pm/pmiserv/hydra_pmi_proxy-pmip_cb.o CC pm/pmiserv/hydra_pmi_proxy-pmip_utils.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v1.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v2.o CC pm/pmiserv/hydra_pmi_proxy-common.o CC pm/pmiserv/hydra_pmi_proxy-pmi_v2_common.o CC ui/mpich/mpiexec.o CC ui/mpich/utils.o CCLD libhydra.la CCLD hydra_persist CCLD hydra_nameserver CCLD hydra_pmi_proxy CCLD libpm.la CCLD mpiexec.hydra make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making all in . make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' CC src/mpi/attr/lib_libmpi_la-attrutil.lo CC src/mpi/coll/lib_libmpi_la-allred_group.lo CC src/mpi/attr/lib_libmpi_la-dup_fn.lo CC src/mpi/coll/lib_libmpi_la-barrier_group.lo CC src/mpi/coll/lib_libmpi_la-helper_fns.lo CC src/mpi/coll/lib_libmpi_la-opsum.lo CC src/mpi/coll/lib_libmpi_la-opmax.lo CC src/mpi/coll/lib_libmpi_la-opmin.lo CC src/mpi/coll/lib_libmpi_la-opband.lo CC src/mpi/coll/lib_libmpi_la-opbor.lo CC src/mpi/coll/lib_libmpi_la-opbxor.lo CC src/mpi/coll/lib_libmpi_la-opland.lo CC src/mpi/coll/lib_libmpi_la-oplor.lo CC src/mpi/coll/lib_libmpi_la-oplxor.lo CC src/mpi/coll/lib_libmpi_la-opprod.lo CC src/mpi/coll/lib_libmpi_la-opminloc.lo CC src/mpi/coll/lib_libmpi_la-opmaxloc.lo CC src/mpi/coll/lib_libmpi_la-opno_op.lo CC src/mpi/coll/lib_libmpi_la-opreplace.lo CC src/mpi/coll/lib_libmpi_la-nbcutil.lo CC src/mpi/comm/lib_libmpi_la-commutil.lo CC src/mpi/datatype/lib_libmpi_la-typeutil.lo CC src/mpi/errhan/lib_libmpi_la-errutil.lo CC src/mpi/errhan/lib_libmpi_la-dynerrutil.lo CC src/mpi/group/lib_libmpi_la-grouputil.lo CC src/mpi/info/lib_libmpi_la-infoutil.lo CC src/mpi/init/lib_libmpi_la-initinfo.lo CC src/mpi/init/lib_libmpi_la-async.lo CC src/mpi/pt2pt/lib_libmpi_la-bsendutil.lo CC src/mpi/pt2pt/lib_libmpi_la-mpir_request.lo CC src/mpi/rma/lib_libmpi_la-winutil.lo CC src/mpi/rma/lib_libmpi_la-rmatypeutil.lo CC src/mpi/timer/lib_libmpi_la-mpidtime.lo CC src/mpi/topo/lib_libmpi_la-topoutil.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-fdebug.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-setbot.lo F77 src/binding/fortran/mpif_h/setbotf.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_util.lo CC src/glue/romio/lib_libmpi_la-glue_romio.lo CC src/mpi_t/lib_libmpi_la-mpit.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprexclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dup_with_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_splitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commtesticf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrsizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrgroupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iccreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-icmergef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-topo_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dims_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graphdims_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cartdim_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_coordsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbcountf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbrsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_shiftf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_subf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getpnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_library_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhcreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhfreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_stringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_classf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initializedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-abortf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-close_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_acceptf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_connectf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdiscf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commparentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_joinf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_spawnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-spawnmultf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-lookup_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-open_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-publish_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpubnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_completef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_fencef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_postf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocate_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_shared_queryf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_create_dynamicf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_attachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_detachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fetch_and_opf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-compare_and_swapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rputf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-raccumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rget_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flushf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_local_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrclassf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrcodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrstringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgetnamf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqcompletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqstartf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isthrmainf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-query_threadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statgetclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statsetelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typenewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typefreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetcntsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetenvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_match_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-windelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alloc_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filegeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fileseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-free_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognthkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infovallenf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_setf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_externalf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packesizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reqgetstatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedarrayf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechindf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechvecf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecindbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_create_hindexed_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecresizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecstructf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecsubarrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetextentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegtextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wingeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_commutativef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_create_adjacentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighbors_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighborsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-improbef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-imrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_idupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibarrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iexscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo rm -f src/binding/fortran/use_mpi/mpifnoext.h sed -e 's/^C/\!/g' -e '/EXTERNAL/d' \ -e '/REAL\*8/d' \ -e '/DOUBLE PRECISION/d' \ -e '/MPI_WTICK/d' src/binding/fortran/mpif_h/mpif.h > src/binding/fortran/use_mpi/mpifnoext.h cp -p src/env/mpicc.bash src/env/mpicc cp -p src/env/mpifort.bash src/env/mpifort cp -p src/env/mpicxx.bash src/env/mpicxx CC src/mpi/attr/lib_libmpi_la-attr_delete.lo CC src/mpi/attr/lib_libmpi_la-attr_get.lo CC src/mpi/attr/lib_libmpi_la-attr_put.lo CC src/mpi/attr/lib_libmpi_la-comm_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_get_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_set_attr.lo CC src/mpi/attr/lib_libmpi_la-keyval_create.lo CC src/mpi/attr/lib_libmpi_la-keyval_free.lo CC src/mpi/attr/lib_libmpi_la-type_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-type_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_get_attr.lo CC src/mpi/attr/lib_libmpi_la-type_set_attr.lo CC src/mpi/attr/lib_libmpi_la-win_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-win_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_get_attr.lo CC src/mpi/attr/lib_libmpi_la-win_set_attr.lo CC src/mpi/coll/lib_libmpi_la-allreduce.lo CC src/mpi/coll/lib_libmpi_la-barrier.lo CC src/mpi/coll/lib_libmpi_la-op_create.lo CC src/mpi/coll/lib_libmpi_la-op_free.lo CC src/mpi/coll/lib_libmpi_la-bcast.lo CC src/mpi/coll/lib_libmpi_la-alltoall.lo CC src/mpi/coll/lib_libmpi_la-alltoallv.lo CC src/mpi/coll/lib_libmpi_la-reduce.lo CC src/mpi/coll/lib_libmpi_la-scatter.lo CC src/mpi/coll/lib_libmpi_la-gather.lo CC src/mpi/coll/lib_libmpi_la-scatterv.lo CC src/mpi/coll/lib_libmpi_la-gatherv.lo CC src/mpi/coll/lib_libmpi_la-scan.lo CC src/mpi/coll/lib_libmpi_la-exscan.lo CC src/mpi/coll/lib_libmpi_la-allgather.lo CC src/mpi/coll/lib_libmpi_la-allgatherv.lo CC src/mpi/coll/lib_libmpi_la-red_scat.lo CC src/mpi/coll/lib_libmpi_la-alltoallw.lo CC src/mpi/coll/lib_libmpi_la-reduce_local.lo CC src/mpi/coll/lib_libmpi_la-op_commutative.lo CC src/mpi/coll/lib_libmpi_la-red_scat_block.lo CC src/mpi/coll/lib_libmpi_la-iallgather.lo CC src/mpi/coll/lib_libmpi_la-iallgatherv.lo CC src/mpi/coll/lib_libmpi_la-iallreduce.lo CC src/mpi/coll/lib_libmpi_la-ialltoall.lo CC src/mpi/coll/lib_libmpi_la-ialltoallv.lo CC src/mpi/coll/lib_libmpi_la-ialltoallw.lo CC src/mpi/coll/lib_libmpi_la-ibarrier.lo CC src/mpi/coll/lib_libmpi_la-ibcast.lo CC src/mpi/coll/lib_libmpi_la-iexscan.lo CC src/mpi/coll/lib_libmpi_la-igather.lo CC src/mpi/coll/lib_libmpi_la-igatherv.lo CC src/mpi/coll/lib_libmpi_la-ired_scat.lo CC src/mpi/coll/lib_libmpi_la-ired_scat_block.lo CC src/mpi/coll/lib_libmpi_la-ireduce.lo CC src/mpi/coll/lib_libmpi_la-iscan.lo CC src/mpi/coll/lib_libmpi_la-iscatter.lo CC src/mpi/coll/lib_libmpi_la-iscatterv.lo CC src/mpi/comm/lib_libmpi_la-comm_compare.lo CC src/mpi/comm/lib_libmpi_la-comm_create.lo CC src/mpi/comm/lib_libmpi_la-comm_create_group.lo CC src/mpi/comm/lib_libmpi_la-comm_dup.lo CC src/mpi/comm/lib_libmpi_la-comm_dup_with_info.lo CC src/mpi/comm/lib_libmpi_la-comm_free.lo CC src/mpi/comm/lib_libmpi_la-comm_get_name.lo CC src/mpi/comm/lib_libmpi_la-comm_get_info.lo CC src/mpi/comm/lib_libmpi_la-comm_set_info.lo CC src/mpi/comm/lib_libmpi_la-comm_group.lo CC src/mpi/comm/lib_libmpi_la-comm_idup.lo CC src/mpi/comm/lib_libmpi_la-comm_rank.lo CC src/mpi/comm/lib_libmpi_la-comm_size.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_group.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_size.lo CC src/mpi/comm/lib_libmpi_la-comm_set_name.lo CC src/mpi/comm/lib_libmpi_la-comm_split.lo CC src/mpi/comm/lib_libmpi_la-comm_test_inter.lo CC src/mpi/comm/lib_libmpi_la-intercomm_create.lo CC src/mpi/comm/lib_libmpi_la-intercomm_merge.lo CC src/mpi/comm/lib_libmpi_la-comm_split_type.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_ack.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_get_acked.lo CC src/mpi/comm/lib_libmpi_la-comm_revoke.lo CC src/mpi/comm/lib_libmpi_la-comm_shrink.lo CC src/mpi/comm/lib_libmpi_la-comm_agree.lo CC src/mpi/datatype/lib_libmpi_la-address.lo CC src/mpi/datatype/lib_libmpi_la-get_address.lo CC src/mpi/datatype/lib_libmpi_la-get_count.lo CC src/mpi/datatype/lib_libmpi_la-get_elements.lo CC src/mpi/datatype/lib_libmpi_la-get_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-pack.lo CC src/mpi/datatype/lib_libmpi_la-unpack.lo CC src/mpi/datatype/lib_libmpi_la-pack_size.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_name.lo CC src/mpi/datatype/lib_libmpi_la-type_set_name.lo CC src/mpi/datatype/lib_libmpi_la-type_size.lo CC src/mpi/datatype/lib_libmpi_la-type_size_x.lo CC src/mpi/datatype/lib_libmpi_la-type_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_vector.lo CC src/mpi/datatype/lib_libmpi_la-type_commit.lo CC src/mpi/datatype/lib_libmpi_la-type_indexed.lo CC src/mpi/datatype/lib_libmpi_la-type_hindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_struct.lo CC src/mpi/datatype/lib_libmpi_la-type_contiguous.lo CC src/mpi/datatype/lib_libmpi_la-type_free.lo CC src/mpi/datatype/lib_libmpi_la-type_hvector.lo CC src/mpi/datatype/lib_libmpi_la-type_dup.lo CC src/mpi/datatype/lib_libmpi_la-type_get_envelope.lo CC src/mpi/datatype/lib_libmpi_la-type_get_contents.lo CC src/mpi/datatype/lib_libmpi_la-type_ub.lo CC src/mpi/datatype/lib_libmpi_la-type_lb.lo CC src/mpi/datatype/lib_libmpi_la-type_get_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_get_extent_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_true_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_get_true_extent_x.lo CC src/mpi/datatype/lib_libmpi_la-type_match_size.lo CC src/mpi/datatype/lib_libmpi_la-type_create_struct.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hvector.lo CC src/mpi/datatype/lib_libmpi_la-pack_external.lo CC src/mpi/datatype/lib_libmpi_la-pack_external_size.lo CC src/mpi/datatype/lib_libmpi_la-unpack_external.lo CC src/mpi/datatype/lib_libmpi_la-type_create_indexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hindexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_resized.lo CC src/mpi/datatype/lib_libmpi_la-type_create_darray.lo CC src/mpi/datatype/lib_libmpi_la-type_create_subarray.lo CC src/mpi/errhan/lib_libmpi_la-add_error_code.lo CC src/mpi/errhan/lib_libmpi_la-add_error_class.lo CC src/mpi/errhan/lib_libmpi_la-add_error_string.lo CC src/mpi/errhan/lib_libmpi_la-comm_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_create.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_free.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_get.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_set.lo CC src/mpi/errhan/lib_libmpi_la-error_class.lo CC src/mpi/errhan/lib_libmpi_la-error_string.lo CC src/mpi/errhan/lib_libmpi_la-file_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_set_errhandler.lo CC src/mpi/group/lib_libmpi_la-group_compare.lo CC src/mpi/group/lib_libmpi_la-group_difference.lo CC src/mpi/group/lib_libmpi_la-group_excl.lo CC src/mpi/group/lib_libmpi_la-group_free.lo CC src/mpi/group/lib_libmpi_la-group_incl.lo CC src/mpi/group/lib_libmpi_la-group_intersection.lo CC src/mpi/group/lib_libmpi_la-group_range_excl.lo CC src/mpi/group/lib_libmpi_la-group_range_incl.lo CC src/mpi/group/lib_libmpi_la-group_rank.lo CC src/mpi/group/lib_libmpi_la-group_size.lo CC src/mpi/group/lib_libmpi_la-group_translate_ranks.lo CC src/mpi/group/lib_libmpi_la-group_union.lo CC src/mpi/info/lib_libmpi_la-info_create.lo CC src/mpi/info/lib_libmpi_la-info_delete.lo CC src/mpi/info/lib_libmpi_la-info_dup.lo CC src/mpi/info/lib_libmpi_la-info_free.lo CC src/mpi/info/lib_libmpi_la-info_get.lo CC src/mpi/info/lib_libmpi_la-info_getn.lo CC src/mpi/info/lib_libmpi_la-info_getnth.lo CC src/mpi/info/lib_libmpi_la-info_getvallen.lo CC src/mpi/info/lib_libmpi_la-info_set.lo CC 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src/mpid/ch3/src/lib_libmpi_la-mpid_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_ssend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_startall.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_vc.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rma.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_isend_self.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_pg.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_printf.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_init_sock.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_connect_sock.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_getinterfaces.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_finalize.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_init.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_isend.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_isendv.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_istartmsg.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_istartmsgv.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_progress.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_win_fns.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-darray_support.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_blockindexed.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_contig.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_indexed.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_pairtype.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_struct.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-dataloop_create_vector.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-segment.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-segment_count.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-segment_flatten.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-segment_packunpack.lo CC src/mpid/common/datatype/dataloop/lib_libmpi_la-subarray_support.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_contents_support.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_datatype_contents.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_datatype_free.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_ext32_datatype.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_ext32_segment.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_segment.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_blockindexed.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_commit.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_contiguous.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_create_pairtype.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_create_resized.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_debug.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_dup.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_get_contents.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_get_envelope.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_indexed.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_struct.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_vector.lo CC src/mpid/common/datatype/lib_libmpi_la-mpid_type_zerolen.lo CC src/mpid/common/datatype/lib_libmpi_la-mpir_type_flatten.lo CC src/mpid/common/sched/lib_libmpi_la-mpid_sched.lo CC src/mpid/common/sock/poll/lib_libmpi_la-sock.lo CC src/mpid/common/thread/lib_libmpi_la-mpid_thread.lo CC src/nameserv/pmi/lib_libmpi_la-pmi_nameserv.lo CC src/pmi/simple/lib_libmpi_la-simple_pmiutil.lo CC src/pmi/simple/lib_libmpi_la-simple_pmi.lo MOD src/binding/fortran/use_mpi/mpi_constants.mod-stamp MOD src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp CXX src/binding/cxx/initcxx.lo CC src/env/mpichversion.o CC src/env/mpivars.o GEN lib/libmpi.la MOD src/binding/fortran/use_mpi/mpi_base.mod-stamp MOD src/binding/fortran/use_mpi/mpi.mod-stamp CXXLD lib/libmpicxx.la GEN lib/libmpifort.la CCLD src/env/mpichversion CCLD src/env/mpivars make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making all in examples make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' CC cpi.o CCLD cpi make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3'libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries /usr/bin/make install-recursive make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making install in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[3]: Nothing to be done for `install-exec-am'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making install in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making install in src make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 opa_primitives.h opa_queue.h opa_util.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/primitives' /usr/bin/install -c -m 644 primitives/opa_by_lock.h primitives/opa_emulated.h primitives/opa_gcc_ia64.h primitives/opa_gcc_intel_32_64.h primitives/opa_gcc_intel_32_64_barrier.h primitives/opa_gcc_intel_32_64_ops.h primitives/opa_gcc_intel_32_64_p3.h primitives/opa_gcc_intel_32_64_p3barrier.h primitives/opa_gcc_intrinsics.h primitives/opa_gcc_ppc.h primitives/opa_gcc_sicortex.h primitives/opa_nt_intrinsics.h primitives/opa_sun_atomic_ops.h primitives/opa_unsafe.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/primitives' /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 opa_config.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/src' Making install in test make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa/test' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/pkgconfig' /usr/bin/install -c -m 644 openpa.pc '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/pkgconfig' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/openpa' Making install in src/mpi/romio make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 include/mpio.h include/mpiof.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpi/romio' Making install in src/pm/hydra make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making install in ../../mpl make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[4]: Nothing to be done for `install-exec-am'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/mpl' Making install in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in src make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' /usr/bin/make install-exec-hook make[6]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[6]: Nothing to be done for `install-exec-hook'. make[6]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making install in include make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in . make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' libtool: install: /usr/bin/install -c hydra_persist /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/hydra_persist libtool: install: /usr/bin/install -c hydra_nameserver /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/hydra_nameserver libtool: install: /usr/bin/install -c hydra_pmi_proxy /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/hydra_pmi_proxy libtool: install: /usr/bin/install -c mpiexec.hydra /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec.hydra /usr/bin/make install-exec-hook make[5]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' if [ -x /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec.hydra ] ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpiexec.hydra mpiexec ; \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpiexec.hydra mpirun ; \ fi make[5]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/src/pm/hydra' Making install in . make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' libtool: install: /usr/bin/install -c lib/.libs/libmpi.so.12.0.4 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.so.12.0.4 libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpi.so.12.0.4 libmpi.so.12 || { rm -f libmpi.so.12 && ln -s libmpi.so.12.0.4 libmpi.so.12; }; }) libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpi.so.12.0.4 libmpi.so || { rm -f libmpi.so && ln -s libmpi.so.12.0.4 libmpi.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpi.lai /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.la libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3; /bin/bash /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/libtool --silent --tag FC --mode=relink gfortran -Isrc/binding/fortran/use_mpi -Jsrc/binding/fortran/use_mpi -fPIC -ffree-line-length-0 -g -O0 -version-info 12:4:0 -o lib/libmpifort.la -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo 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src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_base.lo lib/libmpi.la -lpthread ) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.so.12.0.4T /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.so.12.0.4 libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpifort.so.12.0.4 libmpifort.so.12 || { rm -f libmpifort.so.12 && ln -s libmpifort.so.12.0.4 libmpifort.so.12; }; }) libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpifort.so.12.0.4 libmpifort.so || { rm -f libmpifort.so && ln -s libmpifort.so.12.0.4 libmpifort.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.lai /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.la libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3; /bin/bash /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/libtool --silent --tag CXX --mode=relink g++ -g -fPIC -O0 -version-info 12:4:0 -o lib/libmpicxx.la -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib src/binding/cxx/initcxx.lo lib/libmpi.la -lpthread ) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.so.12.0.4T /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.so.12.0.4 libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpicxx.so.12.0.4 libmpicxx.so.12 || { rm -f libmpicxx.so.12 && ln -s libmpicxx.so.12.0.4 libmpicxx.so.12; }; }) libtool: install: (cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && { ln -s -f libmpicxx.so.12.0.4 libmpicxx.so || { rm -f libmpicxx.so && ln -s libmpicxx.so.12.0.4 libmpicxx.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.lai /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.la libtool: install: /usr/bin/install -c lib/.libs/libmpi.a /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.a libtool: install: chmod 644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.a libtool: install: ranlib /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.a libtool: install: /usr/bin/install -c lib/.libs/libmpifort.a /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.a libtool: install: chmod 644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.a libtool: install: ranlib /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.a libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.a /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.a libtool: install: chmod 644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.a libtool: install: ranlib /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.a libtool: finish: PATH="/usr/lib/mutt:/home/tisaac/.local/bin:/usr/local/texlive/2015/bin/x86_64-linux:/home/tisaac/.bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/tisaac/.bin:/sbin" ldconfig -n /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c src/env/mpichversion src/env/mpivars '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' libtool: install: /usr/bin/install -c src/env/mpichversion /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpichversion libtool: install: /usr/bin/install -c src/env/mpivars /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpivars mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' /usr/bin/install -c src/env/mpicc src/env/parkill src/env/mpifort src/env/mpicxx '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin' /usr/bin/make install-exec-hook make[4]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' for e in /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx \ /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif77 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpifort ; do \ if test -e ${e} ; then \ sed -e 's|__PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich|g' \ -e 's|__EXEC_PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich|g' \ -e 's|__SYSCONFDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/etc|g' \ -e 's|__INCLUDEDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include|g' \ -e 's|__LIBDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib|g' ${e} > ${e}.tmp ; \ /usr/bin/install -c ${e}.tmp ${e} ; \ rm -f ${e}.tmp ; \ fi ; \ done ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpicxx mpic++ ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpifort ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpifort mpif90 ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpifort -a ! -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif77 ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && ln -f -s mpifort mpif77 ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpi.so ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpi.so libmpl.so ; \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpi.so libopa.so ; \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpi.so libmpich.so ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpifort.so ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpifort.so libfmpich.so ; \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpifort.so libmpichf90.so ; fi ; \ if test -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libmpicxx.so ; then \ cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib && ln -f -s libmpicxx.so libmpichcxx.so ; fi make[4]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' /usr/bin/install -c -m 644 hydra_nameserver.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/hydra_nameserver.1 /usr/bin/install -c -m 644 hydra_persist.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/hydra_persist.1 /usr/bin/install -c -m 644 hydra_pmi_proxy.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/hydra_pmi_proxy.1 /usr/bin/install -c -m 644 mpicc.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpicc.1 /usr/bin/install -c -m 644 mpicxx.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpicxx.1 /usr/bin/install -c -m 644 mpiexec.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpiexec.1 /usr/bin/install -c -m 644 mpif77.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpif77.1 /usr/bin/install -c -m 644 mpifort.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/mpifort.1 /usr/bin/install -c -m 644 MPI_Abort.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Abort.3 /usr/bin/install -c -m 644 MPI_Accumulate.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Accumulate.3 /usr/bin/install -c -m 644 MPI_Add_error_class.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Add_error_class.3 /usr/bin/install -c -m 644 MPI_Add_error_code.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Add_error_code.3 /usr/bin/install -c -m 644 MPI_Add_error_string.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Add_error_string.3 /usr/bin/install -c -m 644 MPI_Address.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Address.3 /usr/bin/install -c -m 644 MPI_Allgather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Allgather.3 /usr/bin/install -c -m 644 MPI_Allgatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Allgatherv.3 /usr/bin/install -c -m 644 MPI_Alloc_mem.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Alloc_mem.3 /usr/bin/install -c -m 644 MPI_Allreduce.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Allreduce.3 /usr/bin/install -c -m 644 MPI_Alltoall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Alltoall.3 /usr/bin/install -c -m 644 MPI_Alltoallv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Alltoallv.3 /usr/bin/install -c -m 644 MPI_Alltoallw.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Alltoallw.3 /usr/bin/install -c -m 644 MPI_Attr_delete.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Attr_delete.3 /usr/bin/install -c -m 644 MPI_Attr_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Attr_get.3 /usr/bin/install -c -m 644 MPI_Attr_put.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Attr_put.3 /usr/bin/install -c -m 644 MPI_Barrier.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Barrier.3 /usr/bin/install -c -m 644 MPI_Bcast.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Bcast.3 /usr/bin/install -c -m 644 MPI_Bsend.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Bsend.3 /usr/bin/install -c -m 644 MPI_Bsend_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Bsend_init.3 /usr/bin/install -c -m 644 MPI_Buffer_attach.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Buffer_attach.3 /usr/bin/install -c -m 644 MPI_Buffer_detach.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Buffer_detach.3 /usr/bin/install -c -m 644 MPI_Cancel.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cancel.3 /usr/bin/install -c -m 644 MPI_Cart_coords.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_coords.3 /usr/bin/install -c -m 644 MPI_Cart_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_create.3 /usr/bin/install -c -m 644 MPI_Cartdim_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cartdim_get.3 /usr/bin/install -c -m 644 MPI_Cart_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_get.3 /usr/bin/install -c -m 644 MPI_Cart_map.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_map.3 /usr/bin/install -c -m 644 MPI_Cart_rank.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_rank.3 /usr/bin/install -c -m 644 MPI_Cart_shift.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_shift.3 /usr/bin/install -c -m 644 MPI_Cart_sub.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Cart_sub.3 /usr/bin/install -c -m 644 MPI_Close_port.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Close_port.3 /usr/bin/install -c -m 644 MPI_Comm_accept.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_accept.3 /usr/bin/install -c -m 644 MPI_Comm_call_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_compare.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_compare.3 /usr/bin/install -c -m 644 MPI_Comm_connect.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_connect.3 /usr/bin/install -c -m 644 MPI_Comm_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_create.3 /usr/bin/install -c -m 644 MPI_Comm_create_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_create_group.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_create_group.3 /usr/bin/install -c -m 644 MPI_Comm_create_keyval.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_create_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_delete_attr.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_delete_attr.3 /usr/bin/install -c -m 644 MPI_Comm_disconnect.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_disconnect.3 /usr/bin/install -c -m 644 MPI_Comm_dup.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_dup.3 /usr/bin/install -c -m 644 MPI_Comm_dup_with_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Comm_dup_with_info.3 /usr/bin/install -c -m 644 MPI_Comm_free.3 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-c -m 644 MPI_File_set_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_set_errhandler.3 /usr/bin/install -c -m 644 MPI_File_set_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_set_info.3 /usr/bin/install -c -m 644 MPI_File_set_size.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_set_size.3 /usr/bin/install -c -m 644 MPI_File_set_view.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_set_view.3 /usr/bin/install -c -m 644 MPI_File_sync.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_sync.3 /usr/bin/install -c -m 644 MPI_File_write.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write.3 /usr/bin/install -c -m 644 MPI_File_write_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_File_write_all.3 /usr/bin/install -c -m 644 MPI_File_write_all_begin.3 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/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_library_version.3 /usr/bin/install -c -m 644 MPI_Get_processor_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_processor_name.3 /usr/bin/install -c -m 644 MPI_Get_version.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Get_version.3 /usr/bin/install -c -m 644 MPI_Graph_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_create.3 /usr/bin/install -c -m 644 MPI_Graphdims_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graphdims_get.3 /usr/bin/install -c -m 644 MPI_Graph_get.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_get.3 /usr/bin/install -c -m 644 MPI_Graph_map.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_map.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors_count.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Grequest_complete.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Grequest_complete.3 /usr/bin/install -c -m 644 MPI_Grequest_start.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Grequest_start.3 /usr/bin/install -c -m 644 MPI_Group_compare.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_compare.3 /usr/bin/install -c -m 644 MPI_Group_difference.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_difference.3 /usr/bin/install -c -m 644 MPI_Group_excl.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_excl.3 /usr/bin/install -c -m 644 MPI_Group_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_free.3 /usr/bin/install -c -m 644 MPI_Group_incl.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_incl.3 /usr/bin/install -c -m 644 MPI_Group_intersection.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_intersection.3 /usr/bin/install -c -m 644 MPI_Group_range_excl.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_range_excl.3 /usr/bin/install -c -m 644 MPI_Group_range_incl.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_range_incl.3 /usr/bin/install -c -m 644 MPI_Group_rank.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_rank.3 /usr/bin/install -c -m 644 MPI_Group_size.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_size.3 /usr/bin/install -c -m 644 MPI_Group_translate_ranks.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_translate_ranks.3 /usr/bin/install -c -m 644 MPI_Group_union.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Group_union.3 /usr/bin/install -c -m 644 MPI_Iallgather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Iallgather.3 /usr/bin/install -c -m 644 MPI_Iallgatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Iallgatherv.3 /usr/bin/install -c -m 644 MPI_Iallreduce.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Iallreduce.3 /usr/bin/install -c -m 644 MPI_Ialltoall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ialltoall.3 /usr/bin/install -c -m 644 MPI_Ialltoallv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ialltoallv.3 /usr/bin/install -c -m 644 MPI_Ialltoallw.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ialltoallw.3 /usr/bin/install -c -m 644 MPI_Ibarrier.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ibarrier.3 /usr/bin/install -c -m 644 MPI_Ibcast.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ibcast.3 /usr/bin/install -c -m 644 MPI_Ibsend.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ibsend.3 /usr/bin/install -c -m 644 MPI_Iexscan.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Iexscan.3 /usr/bin/install -c -m 644 MPI_Igather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Igather.3 /usr/bin/install -c -m 644 MPI_Igatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Igatherv.3 /usr/bin/install -c -m 644 MPI_Improbe.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Improbe.3 /usr/bin/install -c -m 644 MPI_Imrecv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Imrecv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallw.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ineighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Info_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Info_create.3 /usr/bin/install -c -m 644 MPI_Info_delete.3 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-c -m 644 MPI_Neighbor_allgather.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgatherv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallw.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Neighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Op_commute.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Op_commute.3 /usr/bin/install -c -m 644 MPI_Op_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Op_create.3 /usr/bin/install -c -m 644 MPI_Open_port.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Open_port.3 /usr/bin/install -c -m 644 MPI_Op_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Op_free.3 /usr/bin/install -c -m 644 MPI_Pack.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pack.3 /usr/bin/install -c -m 644 MPI_Pack_external.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pack_external.3 /usr/bin/install -c -m 644 MPI_Pack_external_size.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pack_external_size.3 /usr/bin/install -c -m 644 MPI_Pack_size.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pack_size.3 /usr/bin/install -c -m 644 MPI_Pcontrol.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Pcontrol.3 /usr/bin/install -c -m 644 MPI_Probe.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Probe.3 /usr/bin/install -c -m 644 MPI_Publish_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Publish_name.3 /usr/bin/install -c -m 644 MPI_Put.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Put.3 /usr/bin/install -c -m 644 MPI_Query_thread.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Query_thread.3 /usr/bin/install -c -m 644 MPI_Raccumulate.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Raccumulate.3 /usr/bin/install -c -m 644 MPI_Recv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Recv.3 /usr/bin/install -c -m 644 MPI_Recv_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Recv_init.3 /usr/bin/install -c -m 644 MPI_Reduce.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Reduce.3 /usr/bin/install -c -m 644 MPI_Reduce_local.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Reduce_local.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Reduce_scatter.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter_block.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Reduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Register_datarep.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Register_datarep.3 /usr/bin/install -c -m 644 MPI_Request_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Request_free.3 /usr/bin/install -c -m 644 MPI_Request_get_status.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Request_get_status.3 /usr/bin/install -c -m 644 MPI_Rget.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rget.3 /usr/bin/install -c -m 644 MPI_Rget_accumulate.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rget_accumulate.3 /usr/bin/install -c -m 644 MPI_Rput.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rput.3 /usr/bin/install -c -m 644 MPI_Rsend.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rsend.3 /usr/bin/install -c -m 644 MPI_Rsend_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Rsend_init.3 /usr/bin/install -c -m 644 MPI_Scan.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Scan.3 /usr/bin/install -c -m 644 MPI_Scatter.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Scatter.3 /usr/bin/install -c -m 644 MPI_Scatterv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Scatterv.3 /usr/bin/install -c -m 644 MPI_Send.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Send.3 /usr/bin/install -c -m 644 MPI_Send_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Send_init.3 /usr/bin/install -c -m 644 MPI_Sendrecv.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Sendrecv.3 /usr/bin/install -c -m 644 MPI_Sendrecv_replace.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Sendrecv_replace.3 /usr/bin/install -c -m 644 MPI_Ssend.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ssend.3 /usr/bin/install -c -m 644 MPI_Ssend_init.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Ssend_init.3 /usr/bin/install -c -m 644 MPI_Start.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Start.3 /usr/bin/install -c -m 644 MPI_Startall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Startall.3 /usr/bin/install -c -m 644 MPI_Status_set_cancelled.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Status_set_cancelled.3 /usr/bin/install -c -m 644 MPI_Status_set_elements.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Status_set_elements.3 /usr/bin/install -c -m 644 MPI_Status_set_elements_x.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Status_set_elements_x.3 /usr/bin/install -c -m 644 MPI_T_category_changed.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_changed.3 /usr/bin/install -c -m 644 MPI_T_category_get_categories.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_categories.3 /usr/bin/install -c -m 644 MPI_T_category_get_cvars.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_cvars.3 /usr/bin/install -c -m 644 MPI_T_category_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_info.3 /usr/bin/install -c -m 644 MPI_T_category_get_num.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_num.3 /usr/bin/install -c -m 644 MPI_T_category_get_pvars.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_category_get_pvars.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_num.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_alloc.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_cvar_read.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_read.3 /usr/bin/install -c -m 644 MPI_T_cvar_write.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_cvar_write.3 /usr/bin/install -c -m 644 MPI_T_enum_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_enum_get_info.3 /usr/bin/install -c -m 644 MPI_T_enum_get_item.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_enum_get_item.3 /usr/bin/install -c -m 644 MPI_Test.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Test.3 /usr/bin/install -c -m 644 MPI_Testall.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Testall.3 /usr/bin/install -c -m 644 MPI_Testany.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Testany.3 /usr/bin/install -c -m 644 MPI_Test_cancelled.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Test_cancelled.3 /usr/bin/install -c -m 644 MPI_Testsome.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Testsome.3 /usr/bin/install -c -m 644 MPI_T_finalize.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_finalize.3 /usr/bin/install -c -m 644 MPI_T_init_thread.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_init_thread.3 /usr/bin/install -c -m 644 MPI_Topo_test.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Topo_test.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_num.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_alloc.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_free.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_T_pvar_handle_free.3 /usr/bin/install -c -m 644 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-m 644 MPI_Waitsome.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Waitsome.3 /usr/bin/install -c -m 644 MPI_Win_allocate.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_allocate.3 /usr/bin/install -c -m 644 MPI_Win_allocate_shared.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_allocate_shared.3 /usr/bin/install -c -m 644 MPI_Win_attach.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_attach.3 /usr/bin/install -c -m 644 MPI_Win_call_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_complete.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_complete.3 /usr/bin/install -c -m 644 MPI_Win_create.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_create.3 /usr/bin/install -c -m 644 MPI_Win_create_dynamic.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_create_dynamic.3 /usr/bin/install -c -m 644 MPI_Win_create_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_create_keyval.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_create_keyval.3 /usr/bin/install -c -m 644 MPI_Win_delete_attr.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_delete_attr.3 /usr/bin/install -c -m 644 MPI_Win_detach.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_detach.3 /usr/bin/install -c -m 644 MPI_Win_fence.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_fence.3 /usr/bin/install -c -m 644 MPI_Win_flush.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_flush.3 /usr/bin/install -c -m 644 MPI_Win_flush_all.3 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/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_get_group.3 /usr/bin/install -c -m 644 MPI_Win_get_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_get_info.3 /usr/bin/install -c -m 644 MPI_Win_get_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_get_name.3 /usr/bin/install -c -m 644 MPI_Win_lock.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_lock.3 /usr/bin/install -c -m 644 MPI_Win_lock_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_lock_all.3 /usr/bin/install -c -m 644 MPI_Win_post.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_post.3 /usr/bin/install -c -m 644 MPI_Win_set_attr.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_set_attr.3 /usr/bin/install -c -m 644 MPI_Win_set_errhandler.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_set_info.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_set_info.3 /usr/bin/install -c -m 644 MPI_Win_set_name.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_set_name.3 /usr/bin/install -c -m 644 MPI_Win_shared_query.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_shared_query.3 /usr/bin/install -c -m 644 MPI_Win_start.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_start.3 /usr/bin/install -c -m 644 MPI_Win_sync.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_sync.3 /usr/bin/install -c -m 644 MPI_Win_test.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_test.3 /usr/bin/install -c -m 644 MPI_Win_unlock.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_unlock.3 /usr/bin/install -c -m 644 MPI_Win_unlock_all.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_unlock_all.3 /usr/bin/install -c -m 644 MPI_Win_wait.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Win_wait.3 /usr/bin/install -c -m 644 MPI_Wtick.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Wtick.3 /usr/bin/install -c -m 644 MPI_Wtime.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPI_Wtime.3 /usr/bin/install -c -m 644 MPIX_Comm_agree.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_agree.3 /usr/bin/install -c -m 644 MPIX_Comm_failure_ack.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_failure_ack.3 /usr/bin/install -c -m 644 MPIX_Comm_failure_get_acked.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_failure_get_acked.3 /usr/bin/install -c -m 644 MPIX_Comm_revoke.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_revoke.3 /usr/bin/install -c -m 644 MPIX_Comm_shrink.3 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man3/MPIX_Comm_shrink.3 if [ ! -e /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich ] ; then mkdir -p /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich ; fi if [ -s ./doc/userguide/user.pdf ] ; then /usr/bin/install -c -m 644 ./doc/userguide/user.pdf /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich/user.pdf ; fi if [ -s ./doc/installguide/install.pdf ] ; then /usr/bin/install -c -m 644 ./doc/installguide/install.pdf /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich/install.pdf ; fi if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doc/mpich/logging.pdf ; fi mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/fortran/mpif_h/mpif.h src/include/mpi.h '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' mkdir -p '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/pkgconfig' /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/pkgconfig' make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3' Making install in examples make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3/examples' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3'libtool: install: warning: relinking `lib/libmpifort.la' libtool: install: warning: relinking `lib/libmpicxx.la' ********End of Output of running make on MPICH ******* Deleting "CC" Deleting "CXX" Deleting "FC" ================================================================================ TEST printEnvVariables from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1600) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1600) **** printenv **** TODO_FILE=/home/tisaac/todo/todo.txt MAKEN=8 LD_LIBRARY_PATH=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib WORK=/home/tisaac/work GNOME_DESKTOP_SESSION_ID=this-is-deprecated BROWSER=firefox XDG_CURRENT_DESKTOP=GNOME DONE_FILE=/home/tisaac/todo/done.txt LOGNAME=tisaac USER=tisaac PATH=/usr/lib/mutt:/home/tisaac/.local/bin:/usr/local/texlive/2015/bin/x86_64-linux:/home/tisaac/.bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/tisaac/.bin CCGOLOCAL=/home/tisaac/ccgo GNOME_KEYRING_CONTROL=/tmp/keyring-984kz1 DISPLAY=:0 vcs_info_msg_0_=%{%}?%{%}%{%}?%{(B%}%{%}master= SSH_AGENT_PID=2524 LANG=en_US.UTF-8 MPICH_DBG_FILENAME=dbg-%w-%d.log TERM=xterm-256color SHELL=/usr/bin/zsh XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0 XDG_SESSION_COOKIE=0bb413799794f59deebb04d900000003-1478788580.738106-107490020 SESSION_MANAGER=local/alembic:@/tmp/.ICE-unix/2478,unix/alembic:/tmp/.ICE-unix/2478 XDG_DATA_DIRS=/usr/share/gnome-xmonad:/usr/share/gnome:/usr/local/share/:/usr/share/ MANDATORY_PATH=/usr/share/gconf/gnome-xmonad.mandatory.path PETSC_ARCH=arch-linux2-c-debug-mpich MPICH_DBG_LEVEL=verbose T8_ARCH=arch-debug WINDOWID=48235846 PETSC_DIR=/home/tisaac/Projects/petsc EDITOR=vim DESKTOP_AUTOSTART_ID=1083d73533c5ccf823147878858097140900000024780037 PETSC_OPTIONS=-malloc_test OMPI_CC=clang GPG_AGENT_INFO=/tmp/keyring-984kz1/gpg:0:1 HOME=/home/tisaac TODO_ACTIONS_DIR=/home/tisaac/.todo.actions.d REPORT_FILE=/home/tisaac/todo/report.txt TODOTXT_DEFAULT_ACTION=ls TODO_DIR=/home/tisaac/todo EXEC=/home/tisaac/exec PYTHONPATH=/home/tisaac/.local/lib/python2.7/site-packages SSH_AUTH_SOCK=/tmp/keyring-984kz1/ssh FULLHOST=alembic XENVIRONMENT=/home/tisaac/.Xresources GDMSESSION=gnome-xmonad BUILD=/home/tisaac/build GNOME_KEYRING_PID=2467 XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0 COLORFGBG=default;default;0 DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-Pwy2k05FP3,guid=0f6504b3754592c949b131dc0000001c _=/home/tisaac/Projects/petsc/./reconfigure-arch-linux2-c-debug-mpich.py XAUTHORITY=/home/tisaac/.Xauthority CCGOREPO=https://svn.ices.utexas.edu/repos/ccgo DESKTOP_SESSION=gnome-xmonad GTAGSLIBPATH=/home/tisaac/Projects/petsc XDG_CONFIG_DIRS=/etc/xdg/xdg-gnome-xmonad:/etc/xdg DEFAULTS_PATH=/usr/share/gconf/gnome-xmonad.default.path UBUNTU_MENUPROXY=libappmenu.so SCRATCH=/home/tisaac/scratch OLDPWD=/home/tisaac/Projects/petsc/src/sys/examples/tutorials MPICH_DBG_CLASS=all SHLVL=1 PWD=/home/tisaac/Projects/petsc COLORTERM=rxvt-xpm vcs_info_msg_1_= OMPI_CXX=clang++ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1607) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1607) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1637) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1637) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1572) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1572) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1591) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1591) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:417) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:417) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:427) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:427) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:553) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:553) Locate a functional C compiler Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc...found Defined make macro "CC" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc" Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:586) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:586) Locate a functional C preprocessor Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc...found Defined make macro "CPP" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E" Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.setCompilers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_BITS_PER_BYTE 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 # 2 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.setCompilers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 21 "/usr/include/features.h" 3 4 #define _FEATURES_H 1 # 98 "/usr/include/features.h" 3 4 #undef __USE_ISOC99 #undef __USE_ISOC95 #undef __USE_POSIX #undef __USE_POSIX2 #undef __USE_POSIX199309 #undef __USE_POSIX199506 #undef __USE_XOPEN #undef __USE_XOPEN_EXTENDED #undef __USE_UNIX98 #undef __USE_XOPEN2K #undef __USE_XOPEN2KXSI #undef __USE_XOPEN2K8 #undef __USE_XOPEN2K8XSI #undef __USE_LARGEFILE #undef __USE_LARGEFILE64 #undef __USE_FILE_OFFSET64 #undef __USE_BSD #undef __USE_SVID #undef __USE_MISC #undef __USE_ATFILE #undef __USE_GNU #undef __USE_REENTRANT #undef __USE_FORTIFY_LEVEL #undef __FAVOR_BSD #undef __KERNEL_STRICT_NAMES #define __KERNEL_STRICT_NAMES #define __USE_ANSI 1 # 141 "/usr/include/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) # 184 "/usr/include/features.h" 3 4 #define _BSD_SOURCE 1 #define _SVID_SOURCE 1 # 207 "/usr/include/features.h" 3 4 #define _POSIX_SOURCE 1 #define _POSIX_C_SOURCE 200809L #define __USE_POSIX_IMPLICITLY 1 #define __USE_POSIX 1 #define __USE_POSIX2 1 #define __USE_POSIX199309 1 #define __USE_POSIX199506 1 #define __USE_XOPEN2K 1 #undef __USE_ISOC95 #define __USE_ISOC95 1 #undef __USE_ISOC99 #define __USE_ISOC99 1 #define __USE_XOPEN2K8 1 #undef _ATFILE_SOURCE #define _ATFILE_SOURCE 1 # 289 "/usr/include/features.h" 3 4 #define __USE_MISC 1 #define __USE_BSD 1 #define __USE_SVID 1 #define __USE_ATFILE 1 # 320 "/usr/include/features.h" 3 4 #define __USE_FORTIFY_LEVEL 0 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 3 4 #define _PREDEFS_H #define __STDC_IEC_559__ 1 #define __STDC_IEC_559_COMPLEX__ 1 # 325 "/usr/include/features.h" 2 3 4 #define __STDC_ISO_10646__ 200009L #undef __GNU_LIBRARY__ #define __GNU_LIBRARY__ 6 #define __GLIBC__ 2 #define __GLIBC_MINOR__ 15 #define __GLIBC_PREREQ(maj,min) ((__GLIBC__ << 16) + __GLIBC_MINOR__ >= ((maj) << 16) + (min)) #define __GLIBC_HAVE_LONG_LONG 1 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define _SYS_CDEFS_H 1 # 36 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #undef __P #undef __PMT #define __LEAF , __leaf__ #define __LEAF_ATTR __attribute__ ((__leaf__)) # 57 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __THROW __attribute__ ((__nothrow__ __LEAF)) #define __THROWNL __attribute__ ((__nothrow__)) #define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct # 88 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __P(args) args #define __PMT(args) args #define __CONCAT(x,y) x ## y #define __STRING(x) #x #define __ptr_t void * #define __long_double_t long double #define __BEGIN_DECLS #define __END_DECLS # 128 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __BEGIN_NAMESPACE_STD #define __END_NAMESPACE_STD #define __USING_NAMESPACE_STD(name) #define __BEGIN_NAMESPACE_C99 #define __END_NAMESPACE_C99 #define __USING_NAMESPACE_C99(name) #define __bounded #define __unbounded #define __ptrvalue #define __bos(ptr) __builtin_object_size (ptr, __USE_FORTIFY_LEVEL > 1) #define __bos0(ptr) __builtin_object_size (ptr, 0) #define __warndecl(name,msg) extern void name (void) __attribute__((__warning__ (msg))) #define __warnattr(msg) __attribute__((__warning__ (msg))) #define __errordecl(name,msg) extern void name (void) __attribute__((__error__ (msg))) # 164 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __flexarr [] # 191 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __REDIRECT(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) #define __REDIRECT_NTH(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROW #define __REDIRECT_NTHNL(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROWNL #define __ASMNAME(cname) __ASMNAME2 (__USER_LABEL_PREFIX__, cname) #define __ASMNAME2(prefix,cname) __STRING (prefix) cname # 225 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_malloc__ __attribute__ ((__malloc__)) # 234 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_pure__ __attribute__ ((__pure__)) #define __attribute_const__ __attribute__ ((__const__)) # 250 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_used__ __attribute__ ((__used__)) #define __attribute_noinline__ __attribute__ ((__noinline__)) #define __attribute_deprecated__ __attribute__ ((__deprecated__)) # 271 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_arg__(x) __attribute__ ((__format_arg__ (x))) # 281 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_strfmon__(a,b) __attribute__ ((__format__ (__strfmon__, a, b))) # 290 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __nonnull(params) __attribute__ ((__nonnull__ params)) #define __attribute_warn_unused_result__ __attribute__ ((__warn_unused_result__)) # 307 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __wur #define __always_inline __inline __attribute__ ((__always_inline__)) # 330 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __extern_inline extern __inline #define __extern_always_inline extern __always_inline __attribute__ ((__artificial__)) # 343 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __va_arg_pack() __builtin_va_arg_pack () #define __va_arg_pack_len() __builtin_va_arg_pack_len () # 364 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __restrict_arr __restrict # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 400 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __LDBL_REDIR1(name,proto,alias) name proto #define __LDBL_REDIR(name,proto) name proto #define __LDBL_REDIR1_NTH(name,proto,alias) name proto __THROW #define __LDBL_REDIR_NTH(name,proto) name proto __THROW #define __LDBL_REDIR_DECL(name) #define __REDIRECT_LDBL(name,proto,alias) __REDIRECT (name, proto, alias) #define __REDIRECT_NTH_LDBL(name,proto,alias) __REDIRECT_NTH (name, proto, alias) # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 3 4 #define __stub_bdflush #define __stub_chflags #define __stub_fattach #define __stub_fchflags #define __stub_fdetach #define __stub_getmsg #define __stub_gtty #define __stub_lchmod #define __stub_putmsg #define __stub_revoke #define __stub_setlogin #define __stub_sigreturn #define __stub_sstk #define __stub_stty # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 #define __need_size_t #define __need_wchar_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 187 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 263 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __wchar_t__ #define __WCHAR_T__ #define _WCHAR_T #define _T_WCHAR_ #define _T_WCHAR #define __WCHAR_T #define _WCHAR_T_ #define _BSD_WCHAR_T_ #define _WCHAR_T_DEFINED_ #define _WCHAR_T_DEFINED #define _WCHAR_T_H #define ___int_wchar_t_h #define __INT_WCHAR_T_H #define _GCC_WCHAR_T #define _WCHAR_T_DECLARED # 290 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef _BSD_WCHAR_T_ # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 343 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL # 34 "/usr/include/stdlib.h" 2 3 4 #define _STDLIB_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 #define WNOHANG 1 #define WUNTRACED 2 #define WSTOPPED 2 #define WEXITED 4 #define WCONTINUED 8 #define WNOWAIT 0x01000000 #define __WNOTHREAD 0x20000000 #define __WALL 0x40000000 #define __WCLONE 0x80000000 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 #define __WEXITSTATUS(status) (((status) & 0xff00) >> 8) #define __WTERMSIG(status) ((status) & 0x7f) #define __WSTOPSIG(status) __WEXITSTATUS(status) #define __WIFEXITED(status) (__WTERMSIG(status) == 0) #define __WIFSIGNALED(status) (((signed char) (((status) & 0x7f) + 1) >> 1) > 0) #define __WIFSTOPPED(status) (((status) & 0xff) == 0x7f) #define __WIFCONTINUED(status) ((status) == __W_CONTINUED) #define __WCOREDUMP(status) ((status) & __WCOREFLAG) #define __W_EXITCODE(ret,sig) ((ret) << 8 | (sig)) #define __W_STOPCODE(sig) ((sig) << 8 | 0x7f) #define __W_CONTINUED 0xffff #define __WCOREFLAG 0x80 # 1 "/usr/include/endian.h" 1 3 4 # 20 "/usr/include/endian.h" 3 4 #define _ENDIAN_H 1 # 32 "/usr/include/endian.h" 3 4 #define __LITTLE_ENDIAN 1234 #define __BIG_ENDIAN 4321 #define __PDP_ENDIAN 3412 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 #define __BYTE_ORDER __LITTLE_ENDIAN # 38 "/usr/include/endian.h" 2 3 4 #define __FLOAT_WORD_ORDER __BYTE_ORDER #define LITTLE_ENDIAN __LITTLE_ENDIAN #define BIG_ENDIAN __BIG_ENDIAN #define PDP_ENDIAN __PDP_ENDIAN #define BYTE_ORDER __BYTE_ORDER #define __LONG_LONG_PAIR(HI,LO) LO, HI # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define _BITS_BYTESWAP_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 #define __bswap_constant_16(x) ((unsigned short int) ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8))) #define __bswap_16(x) (__extension__ ({ register unsigned short int __v, __x = (unsigned short int) (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_16 (__x); else __asm__ ("rorw $8, %w0" : "=r" (__v) : "0" (__x) : "cc"); __v; })) # 56 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_constant_32(x) ((((x) & 0xff000000) >> 24) | (((x) & 0x00ff0000) >> 8) | (((x) & 0x0000ff00) << 8) | (((x) & 0x000000ff) << 24)) # 69 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_32(x) (__extension__ ({ register unsigned int __v, __x = (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_32 (__x); else __asm__ ("bswap %0" : "=r" (__v) : "0" (__x)); __v; })) # 101 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_constant_64(x) (__extension__ ((((x) & 0xff00000000000000ull) >> 56) | (((x) & 0x00ff000000000000ull) >> 40) | (((x) & 0x0000ff0000000000ull) >> 24) | (((x) & 0x000000ff00000000ull) >> 8) | (((x) & 0x00000000ff000000ull) << 8) | (((x) & 0x0000000000ff0000ull) << 24) | (((x) & 0x000000000000ff00ull) << 40) | (((x) & 0x00000000000000ffull) << 56))) # 112 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_64(x) (__extension__ ({ register unsigned long __v, __x = (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_64 (__x); else __asm__ ("bswap %q0" : "=r" (__v) : "0" (__x)); __v; })) # 62 "/usr/include/endian.h" 2 3 4 #define htobe16(x) __bswap_16 (x) #define htole16(x) (x) #define be16toh(x) __bswap_16 (x) #define le16toh(x) (x) #define htobe32(x) __bswap_32 (x) #define htole32(x) (x) #define be32toh(x) __bswap_32 (x) #define le32toh(x) (x) #define htobe64(x) __bswap_64 (x) #define htole64(x) (x) #define be64toh(x) __bswap_64 (x) #define le64toh(x) (x) # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; #define w_termsig __wait_terminated.__w_termsig #define w_coredump __wait_terminated.__w_coredump #define w_retcode __wait_terminated.__w_retcode #define w_stopsig __wait_stopped.__w_stopsig #define w_stopval __wait_stopped.__w_stopval # 44 "/usr/include/stdlib.h" 2 3 4 #define __WAIT_INT(status) (__extension__ (((union { __typeof(status) __in; int __i; }) { .__in = (status) }).__i)) # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); #define __WAIT_STATUS_DEFN int * # 85 "/usr/include/stdlib.h" 3 4 #define WEXITSTATUS(status) __WEXITSTATUS (__WAIT_INT (status)) #define WTERMSIG(status) __WTERMSIG (__WAIT_INT (status)) #define WSTOPSIG(status) __WSTOPSIG (__WAIT_INT (status)) #define WIFEXITED(status) __WIFEXITED (__WAIT_INT (status)) #define WIFSIGNALED(status) __WIFSIGNALED (__WAIT_INT (status)) #define WIFSTOPPED(status) __WIFSTOPPED (__WAIT_INT (status)) #define WIFCONTINUED(status) __WIFCONTINUED (__WAIT_INT (status)) typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; #define __ldiv_t_defined 1 __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; #define __lldiv_t_defined 1 #define RAND_MAX 2147483647 #define EXIT_FAILURE 1 #define EXIT_SUCCESS 0 #define MB_CUR_MAX (__ctype_get_mb_cur_max ()) extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define _SYS_TYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define _BITS_TYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 99 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define __S16_TYPE short int #define __U16_TYPE unsigned short int #define __S32_TYPE int #define __U32_TYPE unsigned int #define __SLONGWORD_TYPE long int #define __ULONGWORD_TYPE unsigned long int # 118 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define __SQUAD_TYPE long int #define __UQUAD_TYPE unsigned long int #define __SWORD_TYPE long int #define __UWORD_TYPE unsigned long int #define __SLONG32_TYPE int #define __ULONG32_TYPE unsigned int #define __S64_TYPE long int #define __U64_TYPE unsigned long int #define __STD_TYPE typedef # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 3 4 #define _BITS_TYPESIZES_H 1 #define __DEV_T_TYPE __UQUAD_TYPE #define __UID_T_TYPE __U32_TYPE #define __GID_T_TYPE __U32_TYPE #define __INO_T_TYPE __ULONGWORD_TYPE #define __INO64_T_TYPE __UQUAD_TYPE #define __MODE_T_TYPE __U32_TYPE #define __NLINK_T_TYPE __UWORD_TYPE #define __OFF_T_TYPE __SLONGWORD_TYPE #define __OFF64_T_TYPE __SQUAD_TYPE #define __PID_T_TYPE __S32_TYPE #define __RLIM_T_TYPE __ULONGWORD_TYPE #define __RLIM64_T_TYPE __UQUAD_TYPE #define __BLKCNT_T_TYPE __SLONGWORD_TYPE #define __BLKCNT64_T_TYPE __SQUAD_TYPE #define __FSBLKCNT_T_TYPE __ULONGWORD_TYPE #define __FSBLKCNT64_T_TYPE __UQUAD_TYPE #define __FSFILCNT_T_TYPE __ULONGWORD_TYPE #define __FSFILCNT64_T_TYPE __UQUAD_TYPE #define __ID_T_TYPE __U32_TYPE #define __CLOCK_T_TYPE __SLONGWORD_TYPE #define __TIME_T_TYPE __SLONGWORD_TYPE #define __USECONDS_T_TYPE __U32_TYPE #define __SUSECONDS_T_TYPE __SLONGWORD_TYPE #define __DADDR_T_TYPE __S32_TYPE #define __SWBLK_T_TYPE __SLONGWORD_TYPE #define __KEY_T_TYPE __S32_TYPE #define __CLOCKID_T_TYPE __S32_TYPE #define __TIMER_T_TYPE void * #define __BLKSIZE_T_TYPE __SLONGWORD_TYPE #define __FSID_T_TYPE struct { int __val[2]; } #define __SSIZE_T_TYPE __SWORD_TYPE #define __FD_SETSIZE 1024 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; #undef __STD_TYPE # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; #define __u_char_defined typedef __loff_t loff_t; typedef __ino_t ino_t; #define __ino_t_defined typedef __dev_t dev_t; #define __dev_t_defined typedef __gid_t gid_t; #define __gid_t_defined typedef __mode_t mode_t; #define __mode_t_defined typedef __nlink_t nlink_t; #define __nlink_t_defined typedef __uid_t uid_t; #define __uid_t_defined typedef __off_t off_t; #define __off_t_defined typedef __pid_t pid_t; #define __pid_t_defined typedef __id_t id_t; #define __id_t_defined typedef __ssize_t ssize_t; #define __ssize_t_defined typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; #define __daddr_t_defined typedef __key_t key_t; #define __key_t_defined #define __need_clock_t #define __need_time_t #define __need_timer_t #define __need_clockid_t # 1 "/usr/include/time.h" 1 3 4 # 54 "/usr/include/time.h" 3 4 #define __clock_t_defined 1 typedef __clock_t clock_t; #undef __need_clock_t #define __time_t_defined 1 typedef __time_t time_t; #undef __need_time_t #define __clockid_t_defined 1 typedef __clockid_t clockid_t; #undef __clockid_time_t #define __timer_t_defined 1 typedef __timer_t timer_t; #undef __need_timer_t # 127 "/usr/include/time.h" 3 4 #undef __need_timespec # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define __need_size_t # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 408 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_NULL # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 188 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define __intN_t(N,MODE) typedef int int ##N ##_t __attribute__ ((__mode__ (MODE))) #define __u_intN_t(N,MODE) typedef unsigned int u_int ##N ##_t __attribute__ ((__mode__ (MODE))) #define __int8_t_defined typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); #define __BIT_TYPES_DEFINED__ 1 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 #define _SYS_SELECT_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 #define __FD_ZERO_STOS "stosq" #define __FD_ZERO(fdsp) do { int __d0, __d1; __asm__ __volatile__ ("cld; rep; " __FD_ZERO_STOS : "=c" (__d0), "=D" (__d1) : "a" (0), "0" (sizeof (fd_set) / sizeof (__fd_mask)), "1" (&__FDS_BITS (fdsp)[0]) : "memory"); } while (0) # 59 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 #define __FD_SET(d,set) ((void) (__FDS_BITS (set)[__FD_ELT (d)] |= __FD_MASK (d))) #define __FD_CLR(d,set) ((void) (__FDS_BITS (set)[__FD_ELT (d)] &= ~__FD_MASK (d))) #define __FD_ISSET(d,set) ((__FDS_BITS (set)[__FD_ELT (d)] & __FD_MASK (d)) != 0) # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 #define _SIGSET_H_types 1 typedef int __sig_atomic_t; #define _SIGSET_NWORDS (1024 / (8 * sizeof (unsigned long int))) typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 #define __sigset_t_defined typedef __sigset_t sigset_t; #define __need_time_t #define __need_timespec # 1 "/usr/include/time.h" 1 3 4 # 67 "/usr/include/time.h" 3 4 #undef __need_clock_t # 83 "/usr/include/time.h" 3 4 #undef __need_time_t # 95 "/usr/include/time.h" 3 4 #undef __clockid_time_t # 107 "/usr/include/time.h" 3 4 #undef __need_timer_t #define __timespec_defined 1 struct timespec { __time_t tv_sec; long int tv_nsec; }; #undef __need_timespec # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 #define __need_timeval # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #define _STRUCT_TIMEVAL 1 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 99 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #undef __need_timeval # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; #define __suseconds_t_defined typedef long int __fd_mask; #undef __NFDBITS #define __NFDBITS (8 * (int) sizeof (__fd_mask)) #define __FD_ELT(d) ((d) / __NFDBITS) #define __FD_MASK(d) ((__fd_mask) 1 << ((d) % __NFDBITS)) typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; #define __FDS_BITS(set) ((set)->__fds_bits) } fd_set; #define FD_SETSIZE __FD_SETSIZE typedef __fd_mask fd_mask; #define NFDBITS __NFDBITS #define FD_SET(fd,fdsetp) __FD_SET (fd, fdsetp) #define FD_CLR(fd,fdsetp) __FD_CLR (fd, fdsetp) #define FD_ISSET(fd,fdsetp) __FD_ISSET (fd, fdsetp) #define FD_ZERO(fdsetp) __FD_ZERO (fdsetp) # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 #define _SYS_SYSMACROS_H 1 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 #define major(dev) gnu_dev_major (dev) #define minor(dev) gnu_dev_minor (dev) #define makedev(maj,min) gnu_dev_makedev (maj, min) # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; #define __blksize_t_defined typedef __blkcnt_t blkcnt_t; #define __blkcnt_t_defined typedef __fsblkcnt_t fsblkcnt_t; #define __fsblkcnt_t_defined typedef __fsfilcnt_t fsfilcnt_t; #define __fsfilcnt_t_defined # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 #define _BITS_PTHREADTYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 #define __SIZEOF_PTHREAD_ATTR_T 56 #define __SIZEOF_PTHREAD_MUTEX_T 40 #define __SIZEOF_PTHREAD_MUTEXATTR_T 4 #define __SIZEOF_PTHREAD_COND_T 48 #define __SIZEOF_PTHREAD_CONDATTR_T 4 #define __SIZEOF_PTHREAD_RWLOCK_T 56 #define __SIZEOF_PTHREAD_RWLOCKATTR_T 8 #define __SIZEOF_PTHREAD_BARRIER_T 32 #define __SIZEOF_PTHREAD_BARRIERATTR_T 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; #define __PTHREAD_MUTEX_HAVE_PREV 1 # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); #define __malloc_and_calloc_defined extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 20 "/usr/include/alloca.h" 3 4 #define _ALLOCA_H 1 #define __need_size_t # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 408 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_NULL # 26 "/usr/include/alloca.h" 2 3 4 #undef alloca extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); #define alloca(size) __builtin_alloca (size) # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; #define __COMPAR_FN_T typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 962 "/usr/include/stdlib.h" 3 4 #undef __need_malloc_and_calloc # 3 "/tmp/petsc-W4It8W/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:627) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:627) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:667) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:667) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:779) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:779) Locate a functional Cxx compiler Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx...found Defined make macro "CXX" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx" Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:817) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:817) Locate a functional Cxx preprocessor Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx...found Defined make macro "CXXCPP" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -E" Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -E -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" # 1 "/home/tisaac/Projects/petsc//" # 1 "" # 1 "" # 1 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-W4It8W/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-W4It8W/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.6/cstdlib" 1 3 # 41 "/usr/include/c++/4.6/cstdlib" 3 # 42 "/usr/include/c++/4.6/cstdlib" 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 1 3 # 153 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 393 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 1 3 # 40 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 324 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 325 "/usr/include/features.h" 2 3 4 # 357 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 41 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/os_defines.h" 2 3 # 394 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/cpu_defines.h" 1 3 # 397 "/usr/include/c++/4.6/x86_64-linux-gnu/./bits/c++config.h" 2 3 # 44 "/usr/include/c++/4.6/cstdlib" 2 3 # 66 "/usr/include/c++/4.6/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 33 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 236 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 55 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef long int __fd_mask; # 65 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 97 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern "C" { # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 } # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 } # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 263 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 } # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 674 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 694 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 } # 67 "/usr/include/c++/4.6/cstdlib" 2 3 # 98 "/usr/include/c++/4.6/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 158 "/usr/include/c++/4.6/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; inline long long abs(long long __x) { return __x >= 0 ? __x : -__x; } using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 193 "/usr/include/c++/4.6/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::abs; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-W4It8W/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:934) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:934) Locate a functional Fortran compiler Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90...found Defined make macro "FC" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90" Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:955) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:955) Make sure fortran comment "!" works Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1072) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1072) ================================================================================ TEST checkArchiver from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1171) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1171) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/lib/mutt/ar...not found Checking for program /home/tisaac/.local/bin/ar...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /home/tisaac/.bin/ar...not found Checking for program /usr/lib/lightdm/lightdm/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/lib/mutt/ranlib...not found Checking for program /home/tisaac/.local/bin/ranlib...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /home/tisaac/.bin/ranlib...not found Checking for program /usr/lib/lightdm/lightdm/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-W4It8W/config.setCompilers/libconf1.a /tmp/petsc-W4It8W/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-W4It8W/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.22 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/lib/mutt/ar...not found Checking for program /home/tisaac/.local/bin/ar...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ar...not found Checking for program /home/tisaac/.bin/ar...not found Checking for program /usr/lib/lightdm/lightdm/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/lib/mutt/ranlib...not found Checking for program /home/tisaac/.local/bin/ranlib...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ranlib...not found Checking for program /home/tisaac/.bin/ranlib...not found Checking for program /usr/lib/lightdm/lightdm/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-W4It8W/config.setCompilers/libconf1.a /tmp/petsc-W4It8W/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-W4It8W/config.setCompilers/libconf1.a Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -L/tmp/petsc-W4It8W/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1285) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1285) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc using flags ['-shared'] Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc" Trying C compiler flag Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid C linker flag -shared Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {fprintf(stdout,"hello"); return 0;} Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -L/tmp/petsc-W4It8W/config.setCompilers -lconftest Using shared linker /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1031) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1031) Determine the PIC option for each compiler Pushing language C Trying C compiler flag Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void foo(void){fprintf(stdout,"hello"); return;} void bar(void){foo();} Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o Accepted C compiler flag Popping language C Pushing language Cxx Trying Cxx compiler flag Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void foo(void){fprintf(stdout,"hello"); return;} void bar(void){foo();} Pushing language C Pushing language C Popping language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o Accepted Cxx compiler flag Popping language Cxx Pushing language FC Trying FC compiler flag Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Pushing language C Pushing language C Popping language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o Accepted FC compiler flag Popping language FC ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1380) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1380) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wl,-rpath,/home/tisaac/Projects/petsc /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/tisaac/Projects/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wl,-rpath,/home/tisaac/Projects/petsc /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/tisaac/Projects/petsc Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wl,-rpath,/home/tisaac/Projects/petsc /tmp/petsc-W4It8W/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/tisaac/Projects/petsc Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1415) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1415) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1464) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1464) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_BITS_PER_BYTE 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 21 "/usr/include/dlfcn.h" 3 4 #define _DLFCN_H 1 # 1 "/usr/include/features.h" 1 3 4 # 21 "/usr/include/features.h" 3 4 #define _FEATURES_H 1 # 98 "/usr/include/features.h" 3 4 #undef __USE_ISOC99 #undef __USE_ISOC95 #undef __USE_POSIX #undef __USE_POSIX2 #undef __USE_POSIX199309 #undef __USE_POSIX199506 #undef __USE_XOPEN #undef __USE_XOPEN_EXTENDED #undef __USE_UNIX98 #undef __USE_XOPEN2K #undef __USE_XOPEN2KXSI #undef __USE_XOPEN2K8 #undef __USE_XOPEN2K8XSI #undef __USE_LARGEFILE #undef __USE_LARGEFILE64 #undef __USE_FILE_OFFSET64 #undef __USE_BSD #undef __USE_SVID #undef __USE_MISC #undef __USE_ATFILE #undef __USE_GNU #undef __USE_REENTRANT #undef __USE_FORTIFY_LEVEL #undef __FAVOR_BSD #undef __KERNEL_STRICT_NAMES #define __KERNEL_STRICT_NAMES #define __USE_ANSI 1 # 141 "/usr/include/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) # 184 "/usr/include/features.h" 3 4 #define _BSD_SOURCE 1 #define _SVID_SOURCE 1 # 207 "/usr/include/features.h" 3 4 #define _POSIX_SOURCE 1 #define _POSIX_C_SOURCE 200809L #define __USE_POSIX_IMPLICITLY 1 #define __USE_POSIX 1 #define __USE_POSIX2 1 #define __USE_POSIX199309 1 #define __USE_POSIX199506 1 #define __USE_XOPEN2K 1 #undef __USE_ISOC95 #define __USE_ISOC95 1 #undef __USE_ISOC99 #define __USE_ISOC99 1 #define __USE_XOPEN2K8 1 #undef _ATFILE_SOURCE #define _ATFILE_SOURCE 1 # 289 "/usr/include/features.h" 3 4 #define __USE_MISC 1 #define __USE_BSD 1 #define __USE_SVID 1 #define __USE_ATFILE 1 # 320 "/usr/include/features.h" 3 4 #define __USE_FORTIFY_LEVEL 0 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 3 4 #define _PREDEFS_H #define __STDC_IEC_559__ 1 #define __STDC_IEC_559_COMPLEX__ 1 # 325 "/usr/include/features.h" 2 3 4 #define __STDC_ISO_10646__ 200009L #undef __GNU_LIBRARY__ #define __GNU_LIBRARY__ 6 #define __GLIBC__ 2 #define __GLIBC_MINOR__ 15 #define __GLIBC_PREREQ(maj,min) ((__GLIBC__ << 16) + __GLIBC_MINOR__ >= ((maj) << 16) + (min)) #define __GLIBC_HAVE_LONG_LONG 1 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define _SYS_CDEFS_H 1 # 36 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #undef __P #undef __PMT #define __LEAF , __leaf__ #define __LEAF_ATTR __attribute__ ((__leaf__)) # 57 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __THROW __attribute__ ((__nothrow__ __LEAF)) #define __THROWNL __attribute__ ((__nothrow__)) #define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct # 88 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __P(args) args #define __PMT(args) args #define __CONCAT(x,y) x ## y #define __STRING(x) #x #define __ptr_t void * #define __long_double_t long double #define __BEGIN_DECLS #define __END_DECLS # 128 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __BEGIN_NAMESPACE_STD #define __END_NAMESPACE_STD #define __USING_NAMESPACE_STD(name) #define __BEGIN_NAMESPACE_C99 #define __END_NAMESPACE_C99 #define __USING_NAMESPACE_C99(name) #define __bounded #define __unbounded #define __ptrvalue #define __bos(ptr) __builtin_object_size (ptr, __USE_FORTIFY_LEVEL > 1) #define __bos0(ptr) __builtin_object_size (ptr, 0) #define __warndecl(name,msg) extern void name (void) __attribute__((__warning__ (msg))) #define __warnattr(msg) __attribute__((__warning__ (msg))) #define __errordecl(name,msg) extern void name (void) __attribute__((__error__ (msg))) # 164 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __flexarr [] # 191 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __REDIRECT(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) #define __REDIRECT_NTH(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROW #define __REDIRECT_NTHNL(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROWNL #define __ASMNAME(cname) __ASMNAME2 (__USER_LABEL_PREFIX__, cname) #define __ASMNAME2(prefix,cname) __STRING (prefix) cname # 225 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_malloc__ __attribute__ ((__malloc__)) # 234 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_pure__ __attribute__ ((__pure__)) #define __attribute_const__ __attribute__ ((__const__)) # 250 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_used__ __attribute__ ((__used__)) #define __attribute_noinline__ __attribute__ ((__noinline__)) #define __attribute_deprecated__ __attribute__ ((__deprecated__)) # 271 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_arg__(x) __attribute__ ((__format_arg__ (x))) # 281 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_strfmon__(a,b) __attribute__ ((__format__ (__strfmon__, a, b))) # 290 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __nonnull(params) __attribute__ ((__nonnull__ params)) #define __attribute_warn_unused_result__ __attribute__ ((__warn_unused_result__)) # 307 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __wur #define __always_inline __inline __attribute__ ((__always_inline__)) # 330 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __extern_inline extern __inline #define __extern_always_inline extern __always_inline __attribute__ ((__artificial__)) # 343 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __va_arg_pack() __builtin_va_arg_pack () #define __va_arg_pack_len() __builtin_va_arg_pack_len () # 364 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __restrict_arr __restrict # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 400 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __LDBL_REDIR1(name,proto,alias) name proto #define __LDBL_REDIR(name,proto) name proto #define __LDBL_REDIR1_NTH(name,proto,alias) name proto __THROW #define __LDBL_REDIR_NTH(name,proto) name proto __THROW #define __LDBL_REDIR_DECL(name) #define __REDIRECT_LDBL(name,proto,alias) __REDIRECT (name, proto, alias) #define __REDIRECT_NTH_LDBL(name,proto,alias) __REDIRECT_NTH (name, proto, alias) # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 3 4 #define __stub_bdflush #define __stub_chflags #define __stub_fattach #define __stub_fchflags #define __stub_fdetach #define __stub_getmsg #define __stub_gtty #define __stub_lchmod #define __stub_putmsg #define __stub_revoke #define __stub_setlogin #define __stub_sigreturn #define __stub_sstk #define __stub_stty # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 #define __need_size_t # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 187 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 408 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_NULL # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 3 4 #define RTLD_LAZY 0x00001 #define RTLD_NOW 0x00002 #define RTLD_BINDING_MASK 0x3 #define RTLD_NOLOAD 0x00004 #define RTLD_DEEPBIND 0x00008 #define RTLD_GLOBAL 0x00100 #define RTLD_LOCAL 0 #define RTLD_NODELETE 0x01000 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest /tmp/petsc-W4It8W/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc using flags ['-shared'] Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared /tmp/petsc-W4It8W/config.setCompilers/conftest.o -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers /tmp/petsc-W4It8W/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ?printf? [enabled by default] /tmp/petsc-W4It8W/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ?printf? [enabled by default] /tmp/petsc-W4It8W/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ?printf? [enabled by default] Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-W4It8W/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest /tmp/petsc-W4It8W/config.setCompilers/conftest.o -ldl Using dynamic linker /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/setCompilers.py:1516) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1516) Output module data as defines and substitutions Substituting "CC" with "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc" Substituting "CFLAGS" with " " Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " " Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90" Substituting "FFLAGS" with " " Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" Defined make macro "MPICC_SHOW" to "gcc -fPIC -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "MPICC_SHOW" to "gcc -fPIC -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "MPICXX_SHOW" to "g++ -g -fPIC -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpicxx -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "MPICXX_SHOW" to "g++ -g -fPIC -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpicxx -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -ffree-line-length-0 -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpifort -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -ffree-line-length-0 -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpifort -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Trying C compiler flag -Wall Trying C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fvisibility=hidden Trying C compiler flag -g3 Trying Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g Trying FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -Wno-unused-variable Trying FC compiler flag -g Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Popping language C Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Popping language Cxx Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g Popping language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc --version stdout: gcc (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc gcc (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -show stdout: gcc -fPIC -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -show stdout: gcc -fPIC -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx --version stdout: g++ (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx g++ (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -show stdout: g++ -g -fPIC -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpicxx -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -show stdout: g++ -g -fPIC -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpicxx -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -show stdout: gfortran -fPIC -ffree-line-length-0 -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpifort -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi Executing: gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: gfortran --version stdout: GNU Fortran (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) 4.6.4 Copyright (C) 2011 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -show stdout: gfortran -fPIC -ffree-line-length-0 -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpifort -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "C_DEPFLAGS" to "-MMD -MP" Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Accepted C99 compile flag: -std=c99 Pushing language CXX Popping language CXX Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "FC_DEFINE_FLAG" to "-D" Pushing language FC Popping language FC Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -V Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.compilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.compilers/conftest.c:5:18: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?x? /tmp/petsc-W4It8W/config.compilers/conftest.c:5:18: error: ?x? undeclared (first use in this function) /tmp/petsc-W4It8W/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.compilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.compilers/conftest.c:5:23: warning: unused variable ?x? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:321) TESTING: checkCFormatting from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:321) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:332) TESTING: checkDynamicLoadFlag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:332) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:168) TESTING: checkCLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:168) Determines the libraries needed to link with C Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl stdout: mpicc for MPICH version 3.1.3 Possible ERROR while running linker: stdout: mpicc for MPICH version 3.1.3stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.4-1ubuntu1~12.04' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.4 (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-fPIC' '-g3' '-o' '/tmp/petsc-W4It8W/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fvisibility=hidden' '-g3' '-I' '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-W4It8W/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. /tmp/petsc-W4It8W/config.compilers/conftest.o -ldl -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib --enable-new-dtags -lmpi -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.1.3 compilers: Unknown arg 3.1.3 compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gcc compilers: Unknown arg COLLECT_GCC=gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.4 compilers: Unknown arg 4.6.4 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.4-1ubuntu1~12.04) compilers: Unknown arg 4.6.4-1ubuntu1~12.04) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Found library directory: -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Found library : -lmpi compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-ldl', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-lmpi', '-lgcc_s'] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1377) TESTING: checkDependencyGenerationFlag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1377) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -MMD -MP /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Trying Cxx compiler flag -MMD -MP Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -MMD -MP /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Trying FC compiler flag -MMD -MP Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g -MMD -MP /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Popping language FC ================================================================================ TEST checkC99Flag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1423) TESTING: checkC99Flag from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1423) Check for -std=c99 or equivalent flag Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:5: error: ?for? loop initial declarations are only allowed in C99 mode /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:5: note: use option -std=c99 or -std=gnu99 to compile your code /tmp/petsc-W4It8W/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-W4It8W/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:5: error: ?for? loop initial declarations are only allowed in C99 mode /tmp/petsc-W4It8W/config.setCompilers/conftest.c:11:5: note: use option -std=c99 or -std=gnu99 to compile your code /tmp/petsc-W4It8W/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] PETSc Error: No output file produced Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -std=c99 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.setCompilers/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.setCompilers/conftest.c:7:11: warning: variable ?x? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -V Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.compilers/conftest.cc: In function ?int main()?: /tmp/petsc-W4It8W/config.compilers/conftest.cc:5:18: error: expected initializer before ?x? Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.compilers/conftest.cc: In function ?int main()?: /tmp/petsc-W4It8W/config.compilers/conftest.cc:5:23: warning: unused variable ?x? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:372) TESTING: checkCxxNamespace from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:372) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:345) TESTING: checkCxxOptionalExtensions from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:345) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:430) TESTING: checkCxxLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:430) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl stdout: mpicxx for MPICH version 3.1.3 Possible ERROR while running linker: stdout: mpicxx for MPICH version 3.1.3stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.4-1ubuntu1~12.04' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.4 (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-fPIC' '-o' '/tmp/petsc-W4It8W/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fvisibility=hidden' '-g' '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-I' '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-W4It8W/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. /tmp/petsc-W4It8W/config.compilers/conftest.o -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.6 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -lmpicxx -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib --enable-new-dtags -lmpi -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language Cxx compilers: Checking arg mpicxx compilers: Unknown arg mpicxx compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.1.3 compilers: Unknown arg 3.1.3 compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=g++ compilers: Unknown arg COLLECT_GCC=g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.4 compilers: Unknown arg 4.6.4 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.4-1ubuntu1~12.04) compilers: Unknown arg 4.6.4-1ubuntu1~12.04) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Found library directory: -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lmpicxx compilers: Found library: -lmpicxx compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lmpicxx', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:387) TESTING: checkCxx11 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:387) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/include/c++/4.6/random:35:0, from /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:4: /usr/include/c++/4.6/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:11: warning: identifier ?constexpr? will become a keyword in C++0x [-Wc++0x-compat] /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:32: error: ?constexpr? does not name a type /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:32: note: C++0x ?constexpr? only available with -std=c++0x or -std=gnu++0x /tmp/petsc-W4It8W/config.setCompilers/conftest.cc: In function ?int main()?: /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:10:11: error: ?random_device? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:10:30: error: expected ?;? before ?rd? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:11:11: error: ?mt19937? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:11:24: error: expected ?;? before ?mt? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:11: error: ?normal_distribution? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ?double? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:36: error: expected ?;? before ?double? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:33: error: ?mt? was not declared in this scope /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:35: error: ?dist? was not declared in this scope /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:24: warning: unused variable ?x? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.6/random:35:0, from /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:4: /usr/include/c++/4.6/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:11: warning: identifier ?constexpr? will become a keyword in C++0x [-Wc++0x-compat] /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:32: error: ?constexpr? does not name a type /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:5:32: note: C++0x ?constexpr? only available with -std=c++0x or -std=gnu++0x /tmp/petsc-W4It8W/config.setCompilers/conftest.cc: In function ?int main()?: /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:10:11: error: ?random_device? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:10:30: error: expected ?;? before ?rd? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:11:11: error: ?mt19937? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:11:24: error: expected ?;? before ?mt? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:11: error: ?normal_distribution? is not a member of ?std? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ?double? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:12:36: error: expected ?;? before ?double? /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:33: error: ?mt? was not declared in this scope /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:35: error: ?dist? was not declared in this scope /tmp/petsc-W4It8W/config.setCompilers/conftest.cc:13:24: warning: unused variable ?x? [-Wunused-variable] PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:593) TESTING: checkFortranTypeSizes from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:593) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:652) TESTING: checkFortranNameMangling from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:652) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/confc.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:689) TESTING: checkFortranNameManglingDouble from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:689) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/confc.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-W4It8W/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: ld returned 1 exit status Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:699) TESTING: checkFortranPreprocessor from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:699) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:723) TESTING: checkFortranDefineCompilerOption from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:723) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro compilers: Fortran uses -D for defining macro Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g -DTesting /tmp/petsc-W4It8W/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC ================================================================================ TEST checkFortranLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:743) TESTING: checkFortranLibraries from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:743) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -V Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl stdout: mpifort for MPICH version 3.1.3 Possible ERROR while running linker: stdout: mpifort for MPICH version 3.1.3stderr: Driving: gfortran -fPIC -ffree-line-length-0 -g -o /tmp/petsc-W4It8W/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpifort -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi -l gfortran -l m -shared-libgcc -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec Using built-in specs. Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec rename spec lib to liborig COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.4-1ubuntu1~12.04' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.6.4 (Ubuntu/Linaro 4.6.4-1ubuntu1~12.04) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-fPIC' '-ffree-line-length-0' '-g' '-o' '/tmp/petsc-W4It8W/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-Wno-unused-variable' '-g' '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-I' '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' '-I' '/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include' '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-W4It8W/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. /tmp/petsc-W4It8W/config.compilers/conftest.o -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.6 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -ldl -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -lmpifort -rpath /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib --enable-new-dtags -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o Popping language FC compilers: Checking arg mpifort compilers: Unknown arg mpifort compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.1.3 compilers: Unknown arg 3.1.3 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -Wno-unused-variable compilers: Unknown arg -Wno-unused-variable compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Checking arg -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Unknown arg -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Found library directory: -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Unknown arg -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include compilers: Found include directory: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include compilers: Checking arg -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include compilers: Found include directory: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include compilers: Checking arg -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Already in lflags so skipping: -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -Wl,-rpath compilers: Unknown arg -Wl,-rpath compilers: Checking arg -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Unknown arg -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Unknown arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.6 compilers: Unknown arg --program-suffix=-4.6 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.6 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.6.4 compilers: Unknown arg 4.6.4 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.6.4-1ubuntu1~12.04) compilers: Unknown arg 4.6.4-1ubuntu1~12.04) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --no-add-needed compilers: Unknown arg --no-add-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbegin.o compilers: Checking arg -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Already in lflags so skipping: -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Already in lflags so skipping: -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. compilers: Checking arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-W4It8W/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.6 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ compilers: Fortran libraries can be used from C++ Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: ld returned 1 exit status Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.setCompilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Executing: /tmp/petsc-W4It8W/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1097) TESTING: checkFortranLinkingCxx from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1097) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/cxxobj.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s /tmp/petsc-W4It8W/config.compilers/confc.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1132) TESTING: checkFortran90 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1132) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran90FreeForm from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1145) TESTING: checkFortran90FreeForm from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1145) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1159) TESTING: checkFortran2003 from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1159) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1179) TESTING: checkFortran90Array from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1179) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/fooobj.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.compilers/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.compilers/conftest Executing: /tmp/petsc-W4It8W/config.compilers/conftest stdout: arrays [0x7ffcfaa74eb0 0x7ffcfaa74eb0 0x7ffcfaa74eb0] arrays [0x7ffcfaa74e60 0x7ffcfaa74e10 0x7ffcfaa74e60] pointers do not match! [0xffffffff 0x7ffcfaa74eb0] [0x2] ERROR while running executable: Could not execute "/tmp/petsc-W4It8W/config.compilers/conftest": arrays [0x7ffcfaa74eb0 0x7ffcfaa74eb0 0x7ffcfaa74eb0] arrays [0x7ffcfaa74e60 0x7ffcfaa74e10 0x7ffcfaa74e60] pointers do not match! [0xffffffff 0x7ffcfaa74eb0] [0x2] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1266) TESTING: checkFortranModuleInclude from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1266) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.compilers/conftest -I/tmp/petsc-W4It8W/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.o /tmp/petsc-W4It8W/config.compilers/configtest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1332) TESTING: checkFortranModuleOutput from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1332) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -module /tmp/petsc-W4It8W/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ?-module? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -module:/tmp/petsc-W4It8W/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ?-module:/tmp/petsc-W4It8W/config.compilers/confdir? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -fmod=/tmp/petsc-W4It8W/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: f951: error: unrecognized command line option ?-fmod=/tmp/petsc-W4It8W/config.compilers/confdir? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.compilers/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -J/tmp/petsc-W4It8W/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.compilers/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1491) TESTING: setupFrameworkCompilers from config.compilers(/home/tisaac/Projects/petsc/config/BuildSystem/config/compilers.py:1491) Not checking for library in Download MPICH: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download MPICH: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] ================================================================================ TEST checkSharedLibrary from config.packages.MPICH(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:751) TESTING: checkSharedLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:751) By default we don't care about checking if the library is shared Popping language C Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:479) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:479) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in Package specific search directory MPI: [] Contents: ['externalpackages', 'include', 'bin', 'share', 'lib'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language C Checking for headers Package specific search directory MPI: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_BITS_PER_BYTE 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" 1 #define MPI_INCLUDED # 17 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #undef MPICH_DEFINE_ATTR_TYPE_TYPES # 32 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPICH_ATTR_POINTER_WITH_TYPE_TAG(buffer_idx,type_idx) #define MPICH_ATTR_TYPE_TAG(type) #define MPICH_ATTR_TYPE_TAG_LAYOUT_COMPATIBLE(type) #define MPICH_ATTR_TYPE_TAG_MUST_BE_NULL() # 60 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPICH_ATTR_TYPE_TAG_STDINT(type) # 70 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPICH_ATTR_TYPE_TAG_C99(type) #define MPICH_ATTR_TYPE_TAG_CXX(type) #define MPI_COMM_NULL ((MPI_Comm)0x04000000) #define MPI_OP_NULL ((MPI_Op)0x18000000) #define MPI_GROUP_NULL ((MPI_Group)0x08000000) #define MPI_DATATYPE_NULL ((MPI_Datatype)0x0c000000) #define MPI_REQUEST_NULL ((MPI_Request)0x2c000000) #define MPI_ERRHANDLER_NULL ((MPI_Errhandler)0x14000000) #define MPI_MESSAGE_NULL ((MPI_Message)MPI_REQUEST_NULL) #define MPI_MESSAGE_NO_PROC ((MPI_Message)0x6c000000) #define MPI_IDENT 0 #define MPI_CONGRUENT 1 #define MPI_SIMILAR 2 #define MPI_UNEQUAL 3 typedef int MPI_Datatype; #define MPI_CHAR ((MPI_Datatype)0x4c000101) #define MPI_SIGNED_CHAR ((MPI_Datatype)0x4c000118) #define MPI_UNSIGNED_CHAR ((MPI_Datatype)0x4c000102) #define MPI_BYTE ((MPI_Datatype)0x4c00010d) #define MPI_WCHAR ((MPI_Datatype)0x4c00040e) #define MPI_SHORT ((MPI_Datatype)0x4c000203) #define MPI_UNSIGNED_SHORT ((MPI_Datatype)0x4c000204) #define MPI_INT ((MPI_Datatype)0x4c000405) #define MPI_UNSIGNED ((MPI_Datatype)0x4c000406) #define MPI_LONG ((MPI_Datatype)0x4c000807) #define MPI_UNSIGNED_LONG ((MPI_Datatype)0x4c000808) #define MPI_FLOAT ((MPI_Datatype)0x4c00040a) #define MPI_DOUBLE ((MPI_Datatype)0x4c00080b) #define MPI_LONG_DOUBLE ((MPI_Datatype)0x4c00100c) #define MPI_LONG_LONG_INT ((MPI_Datatype)0x4c000809) #define MPI_UNSIGNED_LONG_LONG ((MPI_Datatype)0x4c000819) #define MPI_LONG_LONG MPI_LONG_LONG_INT # 136 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_PACKED ((MPI_Datatype)0x4c00010f) #define MPI_LB ((MPI_Datatype)0x4c000010) #define MPI_UB ((MPI_Datatype)0x4c000011) # 148 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_FLOAT_INT ((MPI_Datatype)0x8c000000) #define MPI_DOUBLE_INT ((MPI_Datatype)0x8c000001) #define MPI_LONG_INT ((MPI_Datatype)0x8c000002) #define MPI_SHORT_INT ((MPI_Datatype)0x8c000003) #define MPI_2INT ((MPI_Datatype)0x4c000816) #define MPI_LONG_DOUBLE_INT ((MPI_Datatype)0x8c000004) # 190 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_COMPLEX ((MPI_Datatype)1275070494) #define MPI_DOUBLE_COMPLEX ((MPI_Datatype)1275072546) #define MPI_LOGICAL ((MPI_Datatype)1275069469) #define MPI_REAL ((MPI_Datatype)1275069468) #define MPI_DOUBLE_PRECISION ((MPI_Datatype)1275070495) #define MPI_INTEGER ((MPI_Datatype)1275069467) #define MPI_2INTEGER ((MPI_Datatype)1275070496) # 208 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_2REAL ((MPI_Datatype)1275070497) #define MPI_2DOUBLE_PRECISION ((MPI_Datatype)1275072547) #define MPI_CHARACTER ((MPI_Datatype)1275068698) #define MPI_REAL4 ((MPI_Datatype)0x4c000427) #define MPI_REAL8 ((MPI_Datatype)0x4c000829) #define MPI_REAL16 ((MPI_Datatype)0x4c00102b) #define MPI_COMPLEX8 ((MPI_Datatype)0x4c000828) #define MPI_COMPLEX16 ((MPI_Datatype)0x4c00102a) #define MPI_COMPLEX32 ((MPI_Datatype)0x4c00202c) #define MPI_INTEGER1 ((MPI_Datatype)0x4c00012d) #define MPI_INTEGER2 ((MPI_Datatype)0x4c00022f) #define MPI_INTEGER4 ((MPI_Datatype)0x4c000430) #define MPI_INTEGER8 ((MPI_Datatype)0x4c000831) #define MPI_INTEGER16 ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_INT8_T ((MPI_Datatype)0x4c000137) #define MPI_INT16_T ((MPI_Datatype)0x4c000238) #define MPI_INT32_T ((MPI_Datatype)0x4c000439) #define MPI_INT64_T ((MPI_Datatype)0x4c00083a) #define MPI_UINT8_T ((MPI_Datatype)0x4c00013b) #define MPI_UINT16_T ((MPI_Datatype)0x4c00023c) #define MPI_UINT32_T ((MPI_Datatype)0x4c00043d) #define MPI_UINT64_T ((MPI_Datatype)0x4c00083e) # 247 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_C_BOOL ((MPI_Datatype)0x4c00013f) #define MPI_C_FLOAT_COMPLEX ((MPI_Datatype)0x4c000840) #define MPI_C_COMPLEX MPI_C_FLOAT_COMPLEX #define MPI_C_DOUBLE_COMPLEX ((MPI_Datatype)0x4c001041) #define MPI_C_LONG_DOUBLE_COMPLEX ((MPI_Datatype)0x4c002042) # 263 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_AINT ((MPI_Datatype)0x4c000843) #define MPI_OFFSET ((MPI_Datatype)0x4c000844) #define MPI_COUNT ((MPI_Datatype)0x4c000845) #define MPI_CXX_BOOL ((MPI_Datatype)0x4c000133) #define MPI_CXX_FLOAT_COMPLEX ((MPI_Datatype)0x4c000834) #define MPI_CXX_DOUBLE_COMPLEX ((MPI_Datatype)0x4c001035) #define MPI_CXX_LONG_DOUBLE_COMPLEX ((MPI_Datatype)0x4c002036) #define MPI_TYPECLASS_REAL 1 #define MPI_TYPECLASS_INTEGER 2 #define MPI_TYPECLASS_COMPLEX 3 typedef int MPI_Comm; #define MPI_COMM_WORLD ((MPI_Comm)0x44000000) #define MPI_COMM_SELF ((MPI_Comm)0x44000001) typedef int MPI_Group; #define MPI_GROUP_EMPTY ((MPI_Group)0x48000000) typedef int MPI_Win; #define MPI_WIN_NULL ((MPI_Win)0x20000000) #define MPI_FILE_DEFINED typedef struct ADIOI_FileD *MPI_File; #define MPI_FILE_NULL ((MPI_File)0) typedef int MPI_Op; #define MPI_MAX (MPI_Op)(0x58000001) #define MPI_MIN (MPI_Op)(0x58000002) #define MPI_SUM (MPI_Op)(0x58000003) #define MPI_PROD (MPI_Op)(0x58000004) #define MPI_LAND (MPI_Op)(0x58000005) #define MPI_BAND (MPI_Op)(0x58000006) #define MPI_LOR (MPI_Op)(0x58000007) #define MPI_BOR (MPI_Op)(0x58000008) #define MPI_LXOR (MPI_Op)(0x58000009) #define MPI_BXOR (MPI_Op)(0x5800000a) #define MPI_MINLOC (MPI_Op)(0x5800000b) #define MPI_MAXLOC (MPI_Op)(0x5800000c) #define MPI_REPLACE (MPI_Op)(0x5800000d) #define MPI_NO_OP (MPI_Op)(0x5800000e) # 330 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_TAG_UB 0x64400001 #define MPI_HOST 0x64400003 #define MPI_IO 0x64400005 #define MPI_WTIME_IS_GLOBAL 0x64400007 #define MPI_UNIVERSE_SIZE 0x64400009 #define MPI_LASTUSEDCODE 0x6440000b #define MPI_APPNUM 0x6440000d #define MPI_WIN_BASE 0x66000001 #define MPI_WIN_SIZE 0x66000003 #define MPI_WIN_DISP_UNIT 0x66000005 #define MPI_WIN_CREATE_FLAVOR 0x66000007 #define MPI_WIN_MODEL 0x66000009 #define MPI_MAX_PROCESSOR_NAME 128 #define MPI_MAX_LIBRARY_VERSION_STRING 8192 #define MPI_MAX_ERROR_STRING 512 #define MPI_MAX_PORT_NAME 256 #define MPI_MAX_OBJECT_NAME 128 #define MPI_UNDEFINED (-32766) #define MPI_KEYVAL_INVALID 0x24000000 typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; #define MPI_BSEND_OVERHEAD 96 typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; #define MPI_BOTTOM (void *)0 extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; #define MPI_PROC_NULL (-1) #define MPI_ANY_SOURCE (-2) #define MPI_ROOT (-3) #define MPI_ANY_TAG (-1) #define MPI_LOCK_EXCLUSIVE 234 #define MPI_LOCK_SHARED 235 typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; #define MPI_ERRORS_ARE_FATAL ((MPI_Errhandler)0x54000000) #define MPI_ERRORS_RETURN ((MPI_Errhandler)0x54000001) #define MPIR_ERRORS_THROW_EXCEPTIONS ((MPI_Errhandler)0x54000002) typedef int MPI_Errhandler; #define MPI_NULL_COPY_FN ((MPI_Copy_function *)0) #define MPI_NULL_DELETE_FN ((MPI_Delete_function *)0) #define MPI_DUP_FN MPIR_Dup_fn #define MPI_COMM_NULL_COPY_FN ((MPI_Comm_copy_attr_function*)0) #define MPI_COMM_NULL_DELETE_FN ((MPI_Comm_delete_attr_function*)0) #define MPI_COMM_DUP_FN ((MPI_Comm_copy_attr_function *)MPI_DUP_FN) #define MPI_WIN_NULL_COPY_FN ((MPI_Win_copy_attr_function*)0) #define MPI_WIN_NULL_DELETE_FN ((MPI_Win_delete_attr_function*)0) #define MPI_WIN_DUP_FN ((MPI_Win_copy_attr_function*)MPI_DUP_FN) #define MPI_TYPE_NULL_COPY_FN ((MPI_Type_copy_attr_function*)0) #define MPI_TYPE_NULL_DELETE_FN ((MPI_Type_delete_attr_function*)0) #define MPI_TYPE_DUP_FN ((MPI_Type_copy_attr_function*)MPI_DUP_FN) typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); #define MPI_VERSION 3 #define MPI_SUBVERSION 0 #define MPICH_NAME 3 #define MPICH 1 #define MPICH_HAS_C2F 1 # 485 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPICH_VERSION "3.1.3" #define MPICH_NUMVERSION 30103300 #define MPICH_RELEASE_TYPE_ALPHA 0 #define MPICH_RELEASE_TYPE_BETA 1 #define MPICH_RELEASE_TYPE_RC 2 #define MPICH_RELEASE_TYPE_PATCH 3 #define MPICH_CALC_VERSION(MAJOR,MINOR,REVISION,TYPE,PATCH) (((MAJOR) * 10000000) + ((MINOR) * 100000) + ((REVISION) * 1000) + ((TYPE) * 100) + (PATCH)) enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18, MPI_COMBINER_HINDEXED_BLOCK = 19 }; typedef int MPI_Info; #define MPI_INFO_NULL ((MPI_Info)0x1c000000) #define MPI_INFO_ENV ((MPI_Info)0x5c000001) #define MPI_MAX_INFO_KEY 255 #define MPI_MAX_INFO_VAL 1024 #define MPI_ORDER_C 56 #define MPI_ORDER_FORTRAN 57 #define MPI_DISTRIBUTE_BLOCK 121 #define MPI_DISTRIBUTE_CYCLIC 122 #define MPI_DISTRIBUTE_NONE 123 #define MPI_DISTRIBUTE_DFLT_DARG -49767 #define MPI_IN_PLACE (void *) -1 #define MPI_MODE_NOCHECK 1024 #define MPI_MODE_NOSTORE 2048 #define MPI_MODE_NOPUT 4096 #define MPI_MODE_NOPRECEDE 8192 #define MPI_MODE_NOSUCCEED 16384 #define MPI_COMM_TYPE_SHARED 1 typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; # 558 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_AINT_FMT_DEC_SPEC "%ld" #define MPI_AINT_FMT_HEX_SPEC "%lx" #define HAVE_MPI_OFFSET typedef long long MPI_Offset; typedef struct MPI_Status { int count_lo; int count_hi_and_cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum_s; struct MPIR_T_cvar_handle_s; struct MPIR_T_pvar_handle_s; struct MPIR_T_pvar_session_s; typedef struct MPIR_T_enum_s * MPI_T_enum; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES; #define MPI_T_ENUM_NULL ((MPI_T_enum)NULL) #define MPI_T_CVAR_HANDLE_NULL ((MPI_T_cvar_handle)NULL) #define MPI_T_PVAR_HANDLE_NULL ((MPI_T_pvar_handle)NULL) #define MPI_T_PVAR_SESSION_NULL ((MPI_T_pvar_session)NULL) typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t; typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO } MPIR_T_bind_t; typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_CONSTANT = 60438, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t; typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIR_T_PVAR_CLASS_FIRST = 240, MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC, MPIR_T_PVAR_CLASS_LAST, MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t; #define MPI_Comm_c2f(comm) (MPI_Fint)(comm) #define MPI_Comm_f2c(comm) (MPI_Comm)(comm) #define MPI_Type_c2f(datatype) (MPI_Fint)(datatype) #define MPI_Type_f2c(datatype) (MPI_Datatype)(datatype) #define MPI_Group_c2f(group) (MPI_Fint)(group) #define MPI_Group_f2c(group) (MPI_Group)(group) #define MPI_Info_c2f(info) (MPI_Fint)(info) #define MPI_Info_f2c(info) (MPI_Info)(info) #define MPI_Request_f2c(request) (MPI_Request)(request) #define MPI_Request_c2f(request) (MPI_Fint)(request) #define MPI_Op_c2f(op) (MPI_Fint)(op) #define MPI_Op_f2c(op) (MPI_Op)(op) #define MPI_Errhandler_c2f(errhandler) (MPI_Fint)(errhandler) #define MPI_Errhandler_f2c(errhandler) (MPI_Errhandler)(errhandler) #define MPI_Win_c2f(win) (MPI_Fint)(win) #define MPI_Win_f2c(win) (MPI_Win)(win) #define MPI_Message_c2f(msg) ((MPI_Fint)(msg)) #define MPI_Message_f2c(msg) ((MPI_Message)(msg)) #define PMPI_Comm_c2f(comm) (MPI_Fint)(comm) #define PMPI_Comm_f2c(comm) (MPI_Comm)(comm) #define PMPI_Type_c2f(datatype) (MPI_Fint)(datatype) #define PMPI_Type_f2c(datatype) (MPI_Datatype)(datatype) #define PMPI_Group_c2f(group) (MPI_Fint)(group) #define PMPI_Group_f2c(group) (MPI_Group)(group) #define PMPI_Info_c2f(info) (MPI_Fint)(info) #define PMPI_Info_f2c(info) (MPI_Info)(info) #define PMPI_Request_f2c(request) (MPI_Request)(request) #define PMPI_Request_c2f(request) (MPI_Fint)(request) #define PMPI_Op_c2f(op) (MPI_Fint)(op) #define PMPI_Op_f2c(op) (MPI_Op)(op) #define PMPI_Errhandler_c2f(errhandler) (MPI_Fint)(errhandler) #define PMPI_Errhandler_f2c(errhandler) (MPI_Errhandler)(errhandler) #define PMPI_Win_c2f(win) (MPI_Fint)(win) #define PMPI_Win_f2c(win) (MPI_Win)(win) #define PMPI_Message_c2f(msg) ((MPI_Fint)(msg)) #define PMPI_Message_f2c(msg) ((MPI_Message)(msg)) #define MPI_STATUS_IGNORE (MPI_Status *)1 #define MPI_STATUSES_IGNORE (MPI_Status *)1 #define MPI_ERRCODES_IGNORE (int *)0 #define MPIU_DLL_SPEC extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; #define MPI_ARGV_NULL (char **)0 #define MPI_ARGVS_NULL (char ***)0 typedef struct { MPI_Fint count_lo; MPI_Fint count_hi_and_cancelled; MPI_Fint MPI_SOURCE; MPI_Fint MPI_TAG; MPI_Fint MPI_ERROR; } MPI_F08_Status; extern MPI_F08_Status MPIR_F08_MPI_STATUS_IGNORE_OBJ; extern MPI_F08_Status MPIR_F08_MPI_STATUSES_IGNORE_OBJ[1]; extern int MPIR_F08_MPI_IN_PLACE; extern int MPIR_F08_MPI_BOTTOM; extern MPI_F08_Status *MPI_F08_STATUS_IGNORE; extern MPI_F08_Status *MPI_F08_STATUSES_IGNORE; #define MPI_THREAD_SINGLE 0 #define MPI_THREAD_FUNNELED 1 #define MPI_THREAD_SERIALIZED 2 #define MPI_THREAD_MULTIPLE 3 typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); #define MPI_SUCCESS 0 #define MPI_ERR_BUFFER 1 #define MPI_ERR_COUNT 2 #define MPI_ERR_TYPE 3 #define MPI_ERR_TAG 4 #define MPI_ERR_COMM 5 #define MPI_ERR_RANK 6 #define MPI_ERR_ROOT 7 #define MPI_ERR_TRUNCATE 14 #define MPI_ERR_GROUP 8 #define MPI_ERR_OP 9 #define MPI_ERR_REQUEST 19 #define MPI_ERR_TOPOLOGY 10 #define MPI_ERR_DIMS 11 #define MPI_ERR_ARG 12 #define MPI_ERR_OTHER 15 #define MPI_ERR_UNKNOWN 13 #define MPI_ERR_INTERN 16 #define MPI_ERR_IN_STATUS 17 #define MPI_ERR_PENDING 18 #define MPI_ERR_ACCESS 20 #define MPI_ERR_AMODE 21 #define MPI_ERR_BAD_FILE 22 #define MPI_ERR_CONVERSION 23 #define MPI_ERR_DUP_DATAREP 24 #define MPI_ERR_FILE_EXISTS 25 #define MPI_ERR_FILE_IN_USE 26 #define MPI_ERR_FILE 27 #define MPI_ERR_IO 32 #define MPI_ERR_NO_SPACE 36 #define MPI_ERR_NO_SUCH_FILE 37 #define MPI_ERR_READ_ONLY 40 #define MPI_ERR_UNSUPPORTED_DATAREP 43 #define MPI_ERR_INFO 28 #define MPI_ERR_INFO_KEY 29 #define MPI_ERR_INFO_VALUE 30 #define MPI_ERR_INFO_NOKEY 31 #define MPI_ERR_NAME 33 #define MPI_ERR_NO_MEM 34 #define MPI_ERR_NOT_SAME 35 #define MPI_ERR_PORT 38 #define MPI_ERR_QUOTA 39 #define MPI_ERR_SERVICE 41 #define MPI_ERR_SPAWN 42 #define MPI_ERR_UNSUPPORTED_OPERATION 44 #define MPI_ERR_WIN 45 #define MPI_ERR_BASE 46 #define MPI_ERR_LOCKTYPE 47 #define MPI_ERR_KEYVAL 48 #define MPI_ERR_RMA_CONFLICT 49 #define MPI_ERR_RMA_SYNC 50 #define MPI_ERR_SIZE 51 #define MPI_ERR_DISP 52 #define MPI_ERR_ASSERT 53 #define MPI_ERR_RMA_RANGE 55 #define MPI_ERR_RMA_ATTACH 56 #define MPI_ERR_RMA_SHARED 57 #define MPI_ERR_RMA_FLAVOR 58 #define MPI_T_ERR_MEMORY 59 #define MPI_T_ERR_NOT_INITIALIZED 60 #define MPI_T_ERR_CANNOT_INIT 61 #define MPI_T_ERR_INVALID_INDEX 62 #define MPI_T_ERR_INVALID_ITEM 63 #define MPI_T_ERR_INVALID_HANDLE 64 #define MPI_T_ERR_OUT_OF_HANDLES 65 #define MPI_T_ERR_OUT_OF_SESSIONS 66 #define MPI_T_ERR_INVALID_SESSION 67 #define MPI_T_ERR_CVAR_SET_NOT_NOW 68 #define MPI_T_ERR_CVAR_SET_NEVER 69 #define MPI_T_ERR_PVAR_NO_STARTSTOP 70 #define MPI_T_ERR_PVAR_NO_WRITE 71 #define MPI_T_ERR_PVAR_NO_ATOMIC 72 #define MPI_ERR_LASTCODE 0x3fffffff #define MPICH_ERR_LAST_CLASS 72 #define MPICH_ERR_FIRST_MPIX 100 #define MPIX_ERR_PROC_FAILED MPICH_ERR_FIRST_MPIX+1 #define MPIX_ERR_PROC_FAILED_PENDING MPICH_ERR_FIRST_MPIX+2 #define MPIX_ERR_REVOKED MPICH_ERR_FIRST_MPIX+3 #define MPICH_ERR_LAST_MPIX MPICH_ERR_FIRST_MPIX+3 typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); #define MPI_CONVERSION_FN_NULL ((MPI_Datarep_conversion_function *)0) # 912 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Buffer_attach(void *buffer, int size); int MPI_Buffer_detach(void *buffer_addr, int *size); int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Wait(MPI_Request *request, MPI_Status *status); int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int MPI_Request_free(MPI_Request *request); int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int MPI_Cancel(MPI_Request *request); int MPI_Test_cancelled(const MPI_Status *status, int *flag); int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Start(MPI_Request *request); int MPI_Startall(int count, MPI_Request array_of_requests[]); int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int MPI_Address(const void *location, MPI_Aint *address); int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int MPI_Type_size(MPI_Datatype datatype, int *size); int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_commit(MPI_Datatype *datatype); int MPI_Type_free(MPI_Datatype *datatype); int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int MPI_Barrier(MPI_Comm comm); int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int MPI_Op_free(MPI_Op *op); int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Group_size(MPI_Group group, int *size); int MPI_Group_rank(MPI_Group group, int *rank); int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_free(MPI_Group *group); int MPI_Comm_size(MPI_Comm comm, int *size); int MPI_Comm_rank(MPI_Comm comm, int *rank); int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int MPI_Comm_free(MPI_Comm *comm); int MPI_Comm_test_inter(MPI_Comm comm, int *flag); int MPI_Comm_remote_size(MPI_Comm comm, int *size); int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int MPI_Keyval_free(int *keyval); int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int MPI_Attr_delete(MPI_Comm comm, int keyval); int MPI_Topo_test(MPI_Comm comm, int *status); int MPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int MPI_Dims_create(int nnodes, int ndims, int dims[]); int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int MPI_Cartdim_get(MPI_Comm comm, int *ndims); int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int MPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int MPI_Get_processor_name(char *name, int *resultlen); int MPI_Get_version(int *version, int *subversion); int MPI_Get_library_version(char *version, int *resultlen); int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Errhandler_free(MPI_Errhandler *errhandler); int MPI_Error_string(int errorcode, char *string, int *resultlen); int MPI_Error_class(int errorcode, int *errorclass); double MPI_Wtime(void); double MPI_Wtick(void); int MPI_Init(int *argc, char ***argv); int MPI_Finalize(void); int MPI_Initialized(int *flag); int MPI_Abort(MPI_Comm comm, int errorcode); int MPI_Pcontrol(const int level, ...); int MPIR_Dup_fn(MPI_Comm oldcomm, int keyval, void *extra_state, void *attribute_val_in, void *attribute_val_out, int *flag); int MPI_Close_port(const char *port_name); int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_disconnect(MPI_Comm *comm); int MPI_Comm_get_parent(MPI_Comm *parent); int MPI_Comm_join(int fd, MPI_Comm *intercomm); int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int MPI_Open_port(MPI_Info info, char *port_name); int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Win_complete(MPI_Win win); int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_fence(int assert, MPI_Win win); int MPI_Win_free(MPI_Win *win); int MPI_Win_get_group(MPI_Win win, MPI_Group *group); int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); int MPI_Win_test(MPI_Win win, int *flag); int MPI_Win_unlock(int rank, MPI_Win win); int MPI_Win_wait(MPI_Win win); int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPI_Win_detach(MPI_Win win, const void *base); int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int MPI_Win_set_info(MPI_Win win, MPI_Info info); int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int MPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Win_lock_all(int assert, MPI_Win win); int MPI_Win_unlock_all(MPI_Win win); int MPI_Win_flush(int rank, MPI_Win win); int MPI_Win_flush_all(MPI_Win win); int MPI_Win_flush_local(int rank, MPI_Win win); int MPI_Win_flush_local_all(MPI_Win win); int MPI_Win_sync(MPI_Win win); int MPI_Add_error_class(int *errorclass); int MPI_Add_error_code(int errorclass, int *errorcode); int MPI_Add_error_string(int errorcode, const char *string); int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int MPI_Comm_free_keyval(int *comm_keyval); int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int MPI_File_call_errhandler(MPI_File fh, int errorcode); int MPI_Grequest_complete(MPI_Request request); int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); int MPI_Is_thread_main(int *flag); int MPI_Query_thread(int *provided); int MPI_Status_set_cancelled(MPI_Status *status, int flag); int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int MPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int MPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_free_keyval(int *type_keyval); int MPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int MPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int MPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int MPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int MPI_Win_call_errhandler(MPI_Win win, int errorcode); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int MPI_Win_delete_attr(MPI_Win win, int win_keyval); int MPI_Win_free_keyval(int *win_keyval); int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int MPI_Win_set_name(MPI_Win win, const char *win_name); int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int MPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int MPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int MPI_Finalized(int *flag); int MPI_Free_mem(void *base); int MPI_Get_address(const void *location, MPI_Aint *address); int MPI_Info_create(MPI_Info *info); int MPI_Info_delete(MPI_Info info, const char *key); int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int MPI_Info_set(MPI_Info info, const char *key, const char *value); int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int MPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int MPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int MPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int MPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int MPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int MPI_Type_create_f90_integer(int range, MPI_Datatype *newtype); int MPI_Type_create_f90_real(int precision, int range, MPI_Datatype *newtype); int MPI_Type_create_f90_complex(int precision, int range, MPI_Datatype *newtype); int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int MPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int MPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int MPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int MPI_T_init_thread(int required, int *provided); int MPI_T_finalize(void); int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int MPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int MPI_T_cvar_get_num(int *num_cvar); int MPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int MPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int MPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int MPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int MPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int MPI_T_pvar_get_num(int *num_pvar); int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int MPI_T_pvar_session_create(MPI_T_pvar_session *session); int MPI_T_pvar_session_free(MPI_T_pvar_session *session); int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_category_get_num(int *num_cat); int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); int MPI_T_category_get_categories(int cat_index, int len, int indices[]); int MPI_T_category_changed(int *stamp); int MPIX_Comm_failure_ack(MPI_Comm comm); int MPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int MPIX_Comm_revoke(MPI_Comm comm); int MPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int MPIX_Comm_agree(MPI_Comm comm, int *flag); # 1551 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Buffer_attach(void *buffer, int size); int PMPI_Buffer_detach(void *buffer_addr, int *size); int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Wait(MPI_Request *request, MPI_Status *status); int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int PMPI_Request_free(MPI_Request *request); int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int PMPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int PMPI_Cancel(MPI_Request *request); int PMPI_Test_cancelled(const MPI_Status *status, int *flag); int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Start(MPI_Request *request); int PMPI_Startall(int count, MPI_Request array_of_requests[]); int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int PMPI_Address(const void *location, MPI_Aint *address); int PMPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int PMPI_Type_size(MPI_Datatype datatype, int *size); int PMPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_commit(MPI_Datatype *datatype); int PMPI_Type_free(MPI_Datatype *datatype); int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int PMPI_Barrier(MPI_Comm comm); int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int PMPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int PMPI_Op_free(MPI_Op *op); int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Group_size(MPI_Group group, int *size); int PMPI_Group_rank(MPI_Group group, int *rank); int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_free(MPI_Group *group); int PMPI_Comm_size(MPI_Comm comm, int *size); int PMPI_Comm_rank(MPI_Comm comm, int *rank); int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int PMPI_Comm_free(MPI_Comm *comm); int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); int PMPI_Comm_remote_size(MPI_Comm comm, int *size); int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int PMPI_Keyval_free(int *keyval); int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int PMPI_Attr_delete(MPI_Comm comm, int keyval); int PMPI_Topo_test(MPI_Comm comm, int *status); int PMPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int PMPI_Dims_create(int nnodes, int ndims, int dims[]); int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int PMPI_Get_processor_name(char *name, int *resultlen); int PMPI_Get_version(int *version, int *subversion); int PMPI_Get_library_version(char *version, int *resultlen); int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Errhandler_free(MPI_Errhandler *errhandler); int PMPI_Error_string(int errorcode, char *string, int *resultlen); int PMPI_Error_class(int errorcode, int *errorclass); double PMPI_Wtime(void); double PMPI_Wtick(void); int PMPI_Init(int *argc, char ***argv); int PMPI_Finalize(void); int PMPI_Initialized(int *flag); int PMPI_Abort(MPI_Comm comm, int errorcode); int PMPI_Pcontrol(const int level, ...); int PMPI_Close_port(const char *port_name); int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_disconnect(MPI_Comm *comm); int PMPI_Comm_get_parent(MPI_Comm *parent); int PMPI_Comm_join(int fd, MPI_Comm *intercomm); int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int PMPI_Open_port(MPI_Info info, char *port_name); int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Win_complete(MPI_Win win); int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_fence(int assert, MPI_Win win); int PMPI_Win_free(MPI_Win *win); int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_test(MPI_Win win, int *flag); int PMPI_Win_unlock(int rank, MPI_Win win); int PMPI_Win_wait(MPI_Win win); int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPI_Win_detach(MPI_Win win, const void *base); int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int PMPI_Win_set_info(MPI_Win win, MPI_Info info); int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int PMPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Win_lock_all(int assert, MPI_Win win); int PMPI_Win_unlock_all(MPI_Win win); int PMPI_Win_flush(int rank, MPI_Win win); int PMPI_Win_flush_all(MPI_Win win); int PMPI_Win_flush_local(int rank, MPI_Win win); int PMPI_Win_flush_local_all(MPI_Win win); int PMPI_Win_sync(MPI_Win win); int PMPI_Add_error_class(int *errorclass); int PMPI_Add_error_code(int errorclass, int *errorcode); int PMPI_Add_error_string(int errorcode, const char *string); int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int PMPI_Comm_free_keyval(int *comm_keyval); int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int PMPI_File_call_errhandler(MPI_File fh, int errorcode); int PMPI_Grequest_complete(MPI_Request request); int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); int PMPI_Is_thread_main(int *flag); int PMPI_Query_thread(int *provided); int PMPI_Status_set_cancelled(MPI_Status *status, int flag); int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int PMPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int PMPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_free_keyval(int *type_keyval); int PMPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int PMPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int PMPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int PMPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int PMPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int PMPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); int PMPI_Win_free_keyval(int *win_keyval); int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int PMPI_Win_set_name(MPI_Win win, const char *win_name); int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int PMPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int PMPI_Finalized(int *flag); int PMPI_Free_mem(void *base); int PMPI_Get_address(const void *location, MPI_Aint *address); int PMPI_Info_create(MPI_Info *info); int PMPI_Info_delete(MPI_Info info, const char *key); int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int PMPI_Info_set(MPI_Info info, const char *key, const char *value); int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int PMPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int PMPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int PMPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int PMPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int PMPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int PMPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int PMPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int PMPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int PMPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int PMPI_T_init_thread(int required, int *provided); int PMPI_T_finalize(void); int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int PMPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int PMPI_T_cvar_get_num(int *num_cvar); int PMPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int PMPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int PMPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int PMPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int PMPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int PMPI_T_pvar_get_num(int *num_pvar); int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_category_get_num(int *num_cat); int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); int PMPI_T_category_changed(int *stamp); int PMPIX_Comm_failure_ack(MPI_Comm comm); int PMPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int PMPIX_Comm_revoke(MPI_Comm comm); int PMPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int PMPIX_Comm_agree(MPI_Comm comm, int *flag); #define MPIIMPL_ADVERTISES_FEATURES 1 #define MPIIMPL_HAVE_MPI_INFO 1 #define MPIIMPL_HAVE_MPI_COMBINER_DARRAY 1 #define MPIIMPL_HAVE_MPI_TYPE_CREATE_DARRAY 1 #define MPIIMPL_HAVE_MPI_COMBINER_SUBARRAY 1 #define MPIIMPL_HAVE_MPI_TYPE_CREATE_DARRAY 1 #define MPIIMPL_HAVE_MPI_COMBINER_DUP 1 #define MPIIMPL_HAVE_MPI_GREQUEST 1 #define MPIIMPL_HAVE_STATUS_SET_BYTES 1 #define MPIIMPL_HAVE_STATUS_SET_INFO 1 # 1 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" 1 # 11 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" #define MPIO_INCLUDE # 1 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" 1 # 14 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" 2 #define ROMIO_VERSION 126 #define HAVE_MPI_GREQUEST 1 #define MPIO_Request MPI_Request #define MPIO_USES_MPI_REQUEST #define MPIO_Wait MPI_Wait #define MPIO_Test MPI_Test #define PMPIO_Wait PMPI_Wait #define PMPIO_Test PMPI_Test #define MPIO_REQUEST_DEFINED # 62 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" #define HAVE_MPI_INFO # 71 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" #define MPI_MODE_RDONLY 2 #define MPI_MODE_RDWR 8 #define MPI_MODE_WRONLY 4 #define MPI_MODE_CREATE 1 #define MPI_MODE_EXCL 64 #define MPI_MODE_DELETE_ON_CLOSE 16 #define MPI_MODE_UNIQUE_OPEN 32 #define MPI_MODE_APPEND 128 #define MPI_MODE_SEQUENTIAL 256 #define MPI_DISPLACEMENT_CURRENT -54278278 #define MPIO_REQUEST_NULL ((MPIO_Request) 0) #define MPI_SEEK_SET 600 #define MPI_SEEK_CUR 602 #define MPI_SEEK_END 604 #define MPI_MAX_DATAREP_STRING 128 #define HAVE_MPI_DARRAY_SUBARRAY # 123 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); int MPI_File_close(MPI_File *fh); int MPI_File_delete(const char *filename, MPI_Info info); int MPI_File_set_size(MPI_File fh, MPI_Offset size); int MPI_File_preallocate(MPI_File fh, MPI_Offset size); int MPI_File_get_size(MPI_File fh, MPI_Offset *size); int MPI_File_get_group(MPI_File fh, MPI_Group *group); int MPI_File_get_amode(MPI_File fh, int *amode); int MPI_File_set_info(MPI_File fh, MPI_Info info); int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); int MPI_File_set_atomicity(MPI_File fh, int flag); int MPI_File_get_atomicity(MPI_File fh, int *flag); int MPI_File_sync(MPI_File fh); # 268 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" MPI_File MPI_File_f2c(MPI_Fint file); MPI_Fint MPI_File_c2f(MPI_File file); # 329 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" int PMPI_File_open(MPI_Comm, const char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete(const char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, const char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, const void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, const void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep(const char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 467 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 2201 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" 2 # 2222 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int MPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int MPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int PMPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:215) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:215) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /tmp/petsc-W4It8W/config.packages.MPI Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:6:10: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:178) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:178) Check for functions added to the interface in MPI-2 Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ================================================================================ TEST configureTypes from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:235) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:235) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.types/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.types/conftest Executing: /tmp/petsc-W4It8W/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:247) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247) Checking for MPI Datatype handles Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.packages.MPI/conftest Executing: /tmp/petsc-W4It8W/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.packages.MPI/conftest Executing: /tmp/petsc-W4It8W/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.packages.MPI/conftest Executing: /tmp/petsc-W4It8W/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:318) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:318) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:337) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:337) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: ld returned 1 exit status Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:347) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:347) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.libraries/conftest.cc: In function ?void _check_MPI_Finalize()?: /tmp/petsc-W4It8W/config.libraries/conftest.cc:5:41: warning: variable ?ierr? set but not used [-Wunused-but-set-variable] Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:365) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:365) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" end Checking for fortran mpi_init() Checking for functions [] in library [] [] Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language FC Checking for mpi.mod Checking for functions [] in library [] [] Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:390) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:390) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:9:23: warning: ?fh? is used uninitialized in this function [-Wuninitialized] /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:9:23: warning: ?buf? is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:9:22: warning: ?fh? is used uninitialized in this function [-Wuninitialized] /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:9:22: warning: ?buf? is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:9:22: warning: ?fh? is used uninitialized in this function [-Wuninitialized] /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:9:22: warning: ?disp? is used uninitialized in this function [-Wuninitialized] /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:9:22: warning: ?info? is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:8:18: warning: ?info? is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:7:10: warning: unused variable ?info? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:453) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:453) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:427) TESTING: checkMPICHorOpenMPI from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:427) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.packages.MPI /tmp/petsc-W4It8W/config.packages.MPI/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.packages.MPI/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.packages.MPI/conftest.c" # 1 "/tmp/petsc-W4It8W/config.packages.MPI/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 # 2 "/tmp/petsc-W4It8W/config.packages.MPI/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.packages.MPI/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.packages.MPI/conftest.c" 2 # 1 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" 1 #define MPI_INCLUDED # 17 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #undef MPICH_DEFINE_ATTR_TYPE_TYPES # 32 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPICH_ATTR_POINTER_WITH_TYPE_TAG(buffer_idx,type_idx) #define MPICH_ATTR_TYPE_TAG(type) #define MPICH_ATTR_TYPE_TAG_LAYOUT_COMPATIBLE(type) #define MPICH_ATTR_TYPE_TAG_MUST_BE_NULL() # 60 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPICH_ATTR_TYPE_TAG_STDINT(type) # 70 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPICH_ATTR_TYPE_TAG_C99(type) #define MPICH_ATTR_TYPE_TAG_CXX(type) #define MPI_COMM_NULL ((MPI_Comm)0x04000000) #define MPI_OP_NULL ((MPI_Op)0x18000000) #define MPI_GROUP_NULL ((MPI_Group)0x08000000) #define MPI_DATATYPE_NULL ((MPI_Datatype)0x0c000000) #define MPI_REQUEST_NULL ((MPI_Request)0x2c000000) #define MPI_ERRHANDLER_NULL ((MPI_Errhandler)0x14000000) #define MPI_MESSAGE_NULL ((MPI_Message)MPI_REQUEST_NULL) #define MPI_MESSAGE_NO_PROC ((MPI_Message)0x6c000000) #define MPI_IDENT 0 #define MPI_CONGRUENT 1 #define MPI_SIMILAR 2 #define MPI_UNEQUAL 3 typedef int MPI_Datatype; #define MPI_CHAR ((MPI_Datatype)0x4c000101) #define MPI_SIGNED_CHAR ((MPI_Datatype)0x4c000118) #define MPI_UNSIGNED_CHAR ((MPI_Datatype)0x4c000102) #define MPI_BYTE ((MPI_Datatype)0x4c00010d) #define MPI_WCHAR ((MPI_Datatype)0x4c00040e) #define MPI_SHORT ((MPI_Datatype)0x4c000203) #define MPI_UNSIGNED_SHORT ((MPI_Datatype)0x4c000204) #define MPI_INT ((MPI_Datatype)0x4c000405) #define MPI_UNSIGNED ((MPI_Datatype)0x4c000406) #define MPI_LONG ((MPI_Datatype)0x4c000807) #define MPI_UNSIGNED_LONG ((MPI_Datatype)0x4c000808) #define MPI_FLOAT ((MPI_Datatype)0x4c00040a) #define MPI_DOUBLE ((MPI_Datatype)0x4c00080b) #define MPI_LONG_DOUBLE ((MPI_Datatype)0x4c00100c) #define MPI_LONG_LONG_INT ((MPI_Datatype)0x4c000809) #define MPI_UNSIGNED_LONG_LONG ((MPI_Datatype)0x4c000819) #define MPI_LONG_LONG MPI_LONG_LONG_INT # 136 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_PACKED ((MPI_Datatype)0x4c00010f) #define MPI_LB ((MPI_Datatype)0x4c000010) #define MPI_UB ((MPI_Datatype)0x4c000011) # 148 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_FLOAT_INT ((MPI_Datatype)0x8c000000) #define MPI_DOUBLE_INT ((MPI_Datatype)0x8c000001) #define MPI_LONG_INT ((MPI_Datatype)0x8c000002) #define MPI_SHORT_INT ((MPI_Datatype)0x8c000003) #define MPI_2INT ((MPI_Datatype)0x4c000816) #define MPI_LONG_DOUBLE_INT ((MPI_Datatype)0x8c000004) # 190 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_COMPLEX ((MPI_Datatype)1275070494) #define MPI_DOUBLE_COMPLEX ((MPI_Datatype)1275072546) #define MPI_LOGICAL ((MPI_Datatype)1275069469) #define MPI_REAL ((MPI_Datatype)1275069468) #define MPI_DOUBLE_PRECISION ((MPI_Datatype)1275070495) #define MPI_INTEGER ((MPI_Datatype)1275069467) #define MPI_2INTEGER ((MPI_Datatype)1275070496) # 208 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_2REAL ((MPI_Datatype)1275070497) #define MPI_2DOUBLE_PRECISION ((MPI_Datatype)1275072547) #define MPI_CHARACTER ((MPI_Datatype)1275068698) #define MPI_REAL4 ((MPI_Datatype)0x4c000427) #define MPI_REAL8 ((MPI_Datatype)0x4c000829) #define MPI_REAL16 ((MPI_Datatype)0x4c00102b) #define MPI_COMPLEX8 ((MPI_Datatype)0x4c000828) #define MPI_COMPLEX16 ((MPI_Datatype)0x4c00102a) #define MPI_COMPLEX32 ((MPI_Datatype)0x4c00202c) #define MPI_INTEGER1 ((MPI_Datatype)0x4c00012d) #define MPI_INTEGER2 ((MPI_Datatype)0x4c00022f) #define MPI_INTEGER4 ((MPI_Datatype)0x4c000430) #define MPI_INTEGER8 ((MPI_Datatype)0x4c000831) #define MPI_INTEGER16 ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_INT8_T ((MPI_Datatype)0x4c000137) #define MPI_INT16_T ((MPI_Datatype)0x4c000238) #define MPI_INT32_T ((MPI_Datatype)0x4c000439) #define MPI_INT64_T ((MPI_Datatype)0x4c00083a) #define MPI_UINT8_T ((MPI_Datatype)0x4c00013b) #define MPI_UINT16_T ((MPI_Datatype)0x4c00023c) #define MPI_UINT32_T ((MPI_Datatype)0x4c00043d) #define MPI_UINT64_T ((MPI_Datatype)0x4c00083e) # 247 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_C_BOOL ((MPI_Datatype)0x4c00013f) #define MPI_C_FLOAT_COMPLEX ((MPI_Datatype)0x4c000840) #define MPI_C_COMPLEX MPI_C_FLOAT_COMPLEX #define MPI_C_DOUBLE_COMPLEX ((MPI_Datatype)0x4c001041) #define MPI_C_LONG_DOUBLE_COMPLEX ((MPI_Datatype)0x4c002042) # 263 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_AINT ((MPI_Datatype)0x4c000843) #define MPI_OFFSET ((MPI_Datatype)0x4c000844) #define MPI_COUNT ((MPI_Datatype)0x4c000845) #define MPI_CXX_BOOL ((MPI_Datatype)0x4c000133) #define MPI_CXX_FLOAT_COMPLEX ((MPI_Datatype)0x4c000834) #define MPI_CXX_DOUBLE_COMPLEX ((MPI_Datatype)0x4c001035) #define MPI_CXX_LONG_DOUBLE_COMPLEX ((MPI_Datatype)0x4c002036) #define MPI_TYPECLASS_REAL 1 #define MPI_TYPECLASS_INTEGER 2 #define MPI_TYPECLASS_COMPLEX 3 typedef int MPI_Comm; #define MPI_COMM_WORLD ((MPI_Comm)0x44000000) #define MPI_COMM_SELF ((MPI_Comm)0x44000001) typedef int MPI_Group; #define MPI_GROUP_EMPTY ((MPI_Group)0x48000000) typedef int MPI_Win; #define MPI_WIN_NULL ((MPI_Win)0x20000000) #define MPI_FILE_DEFINED typedef struct ADIOI_FileD *MPI_File; #define MPI_FILE_NULL ((MPI_File)0) typedef int MPI_Op; #define MPI_MAX (MPI_Op)(0x58000001) #define MPI_MIN (MPI_Op)(0x58000002) #define MPI_SUM (MPI_Op)(0x58000003) #define MPI_PROD (MPI_Op)(0x58000004) #define MPI_LAND (MPI_Op)(0x58000005) #define MPI_BAND (MPI_Op)(0x58000006) #define MPI_LOR (MPI_Op)(0x58000007) #define MPI_BOR (MPI_Op)(0x58000008) #define MPI_LXOR (MPI_Op)(0x58000009) #define MPI_BXOR (MPI_Op)(0x5800000a) #define MPI_MINLOC (MPI_Op)(0x5800000b) #define MPI_MAXLOC (MPI_Op)(0x5800000c) #define MPI_REPLACE (MPI_Op)(0x5800000d) #define MPI_NO_OP (MPI_Op)(0x5800000e) # 330 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_TAG_UB 0x64400001 #define MPI_HOST 0x64400003 #define MPI_IO 0x64400005 #define MPI_WTIME_IS_GLOBAL 0x64400007 #define MPI_UNIVERSE_SIZE 0x64400009 #define MPI_LASTUSEDCODE 0x6440000b #define MPI_APPNUM 0x6440000d #define MPI_WIN_BASE 0x66000001 #define MPI_WIN_SIZE 0x66000003 #define MPI_WIN_DISP_UNIT 0x66000005 #define MPI_WIN_CREATE_FLAVOR 0x66000007 #define MPI_WIN_MODEL 0x66000009 #define MPI_MAX_PROCESSOR_NAME 128 #define MPI_MAX_LIBRARY_VERSION_STRING 8192 #define MPI_MAX_ERROR_STRING 512 #define MPI_MAX_PORT_NAME 256 #define MPI_MAX_OBJECT_NAME 128 #define MPI_UNDEFINED (-32766) #define MPI_KEYVAL_INVALID 0x24000000 typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; #define MPI_BSEND_OVERHEAD 96 typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; #define MPI_BOTTOM (void *)0 extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; #define MPI_PROC_NULL (-1) #define MPI_ANY_SOURCE (-2) #define MPI_ROOT (-3) #define MPI_ANY_TAG (-1) #define MPI_LOCK_EXCLUSIVE 234 #define MPI_LOCK_SHARED 235 typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; #define MPI_ERRORS_ARE_FATAL ((MPI_Errhandler)0x54000000) #define MPI_ERRORS_RETURN ((MPI_Errhandler)0x54000001) #define MPIR_ERRORS_THROW_EXCEPTIONS ((MPI_Errhandler)0x54000002) typedef int MPI_Errhandler; #define MPI_NULL_COPY_FN ((MPI_Copy_function *)0) #define MPI_NULL_DELETE_FN ((MPI_Delete_function *)0) #define MPI_DUP_FN MPIR_Dup_fn #define MPI_COMM_NULL_COPY_FN ((MPI_Comm_copy_attr_function*)0) #define MPI_COMM_NULL_DELETE_FN ((MPI_Comm_delete_attr_function*)0) #define MPI_COMM_DUP_FN ((MPI_Comm_copy_attr_function *)MPI_DUP_FN) #define MPI_WIN_NULL_COPY_FN ((MPI_Win_copy_attr_function*)0) #define MPI_WIN_NULL_DELETE_FN ((MPI_Win_delete_attr_function*)0) #define MPI_WIN_DUP_FN ((MPI_Win_copy_attr_function*)MPI_DUP_FN) #define MPI_TYPE_NULL_COPY_FN ((MPI_Type_copy_attr_function*)0) #define MPI_TYPE_NULL_DELETE_FN ((MPI_Type_delete_attr_function*)0) #define MPI_TYPE_DUP_FN ((MPI_Type_copy_attr_function*)MPI_DUP_FN) typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); #define MPI_VERSION 3 #define MPI_SUBVERSION 0 #define MPICH_NAME 3 #define MPICH 1 #define MPICH_HAS_C2F 1 # 485 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPICH_VERSION "3.1.3" #define MPICH_NUMVERSION 30103300 #define MPICH_RELEASE_TYPE_ALPHA 0 #define MPICH_RELEASE_TYPE_BETA 1 #define MPICH_RELEASE_TYPE_RC 2 #define MPICH_RELEASE_TYPE_PATCH 3 #define MPICH_CALC_VERSION(MAJOR,MINOR,REVISION,TYPE,PATCH) (((MAJOR) * 10000000) + ((MINOR) * 100000) + ((REVISION) * 1000) + ((TYPE) * 100) + (PATCH)) enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18, MPI_COMBINER_HINDEXED_BLOCK = 19 }; typedef int MPI_Info; #define MPI_INFO_NULL ((MPI_Info)0x1c000000) #define MPI_INFO_ENV ((MPI_Info)0x5c000001) #define MPI_MAX_INFO_KEY 255 #define MPI_MAX_INFO_VAL 1024 #define MPI_ORDER_C 56 #define MPI_ORDER_FORTRAN 57 #define MPI_DISTRIBUTE_BLOCK 121 #define MPI_DISTRIBUTE_CYCLIC 122 #define MPI_DISTRIBUTE_NONE 123 #define MPI_DISTRIBUTE_DFLT_DARG -49767 #define MPI_IN_PLACE (void *) -1 #define MPI_MODE_NOCHECK 1024 #define MPI_MODE_NOSTORE 2048 #define MPI_MODE_NOPUT 4096 #define MPI_MODE_NOPRECEDE 8192 #define MPI_MODE_NOSUCCEED 16384 #define MPI_COMM_TYPE_SHARED 1 typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; # 558 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" #define MPI_AINT_FMT_DEC_SPEC "%ld" #define MPI_AINT_FMT_HEX_SPEC "%lx" #define HAVE_MPI_OFFSET typedef long long MPI_Offset; typedef struct MPI_Status { int count_lo; int count_hi_and_cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum_s; struct MPIR_T_cvar_handle_s; struct MPIR_T_pvar_handle_s; struct MPIR_T_pvar_session_s; typedef struct MPIR_T_enum_s * MPI_T_enum; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES; #define MPI_T_ENUM_NULL ((MPI_T_enum)NULL) #define MPI_T_CVAR_HANDLE_NULL ((MPI_T_cvar_handle)NULL) #define MPI_T_PVAR_HANDLE_NULL ((MPI_T_pvar_handle)NULL) #define MPI_T_PVAR_SESSION_NULL ((MPI_T_pvar_session)NULL) typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t; typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO } MPIR_T_bind_t; typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_CONSTANT = 60438, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t; typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIR_T_PVAR_CLASS_FIRST = 240, MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC, MPIR_T_PVAR_CLASS_LAST, MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t; #define MPI_Comm_c2f(comm) (MPI_Fint)(comm) #define MPI_Comm_f2c(comm) (MPI_Comm)(comm) #define MPI_Type_c2f(datatype) (MPI_Fint)(datatype) #define MPI_Type_f2c(datatype) (MPI_Datatype)(datatype) #define MPI_Group_c2f(group) (MPI_Fint)(group) #define MPI_Group_f2c(group) (MPI_Group)(group) #define MPI_Info_c2f(info) (MPI_Fint)(info) #define MPI_Info_f2c(info) (MPI_Info)(info) #define MPI_Request_f2c(request) (MPI_Request)(request) #define MPI_Request_c2f(request) (MPI_Fint)(request) #define MPI_Op_c2f(op) (MPI_Fint)(op) #define MPI_Op_f2c(op) (MPI_Op)(op) #define MPI_Errhandler_c2f(errhandler) (MPI_Fint)(errhandler) #define MPI_Errhandler_f2c(errhandler) (MPI_Errhandler)(errhandler) #define MPI_Win_c2f(win) (MPI_Fint)(win) #define MPI_Win_f2c(win) (MPI_Win)(win) #define MPI_Message_c2f(msg) ((MPI_Fint)(msg)) #define MPI_Message_f2c(msg) ((MPI_Message)(msg)) #define PMPI_Comm_c2f(comm) (MPI_Fint)(comm) #define PMPI_Comm_f2c(comm) (MPI_Comm)(comm) #define PMPI_Type_c2f(datatype) (MPI_Fint)(datatype) #define PMPI_Type_f2c(datatype) (MPI_Datatype)(datatype) #define PMPI_Group_c2f(group) (MPI_Fint)(group) #define PMPI_Group_f2c(group) (MPI_Group)(group) #define PMPI_Info_c2f(info) (MPI_Fint)(info) #define PMPI_Info_f2c(info) (MPI_Info)(info) #define PMPI_Request_f2c(request) (MPI_Request)(request) #define PMPI_Request_c2f(request) (MPI_Fint)(request) #define PMPI_Op_c2f(op) (MPI_Fint)(op) #define PMPI_Op_f2c(op) (MPI_Op)(op) #define PMPI_Errhandler_c2f(errhandler) (MPI_Fint)(errhandler) #define PMPI_Errhandler_f2c(errhandler) (MPI_Errhandler)(errhandler) #define PMPI_Win_c2f(win) (MPI_Fint)(win) #define PMPI_Win_f2c(win) (MPI_Win)(win) #define PMPI_Message_c2f(msg) ((MPI_Fint)(msg)) #define PMPI_Message_f2c(msg) ((MPI_Message)(msg)) #define MPI_STATUS_IGNORE (MPI_Status *)1 #define MPI_STATUSES_IGNORE (MPI_Status *)1 #define MPI_ERRCODES_IGNORE (int *)0 #define MPIU_DLL_SPEC extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; #define MPI_ARGV_NULL (char **)0 #define MPI_ARGVS_NULL (char ***)0 typedef struct { MPI_Fint count_lo; MPI_Fint count_hi_and_cancelled; MPI_Fint MPI_SOURCE; MPI_Fint MPI_TAG; MPI_Fint MPI_ERROR; } MPI_F08_Status; extern MPI_F08_Status MPIR_F08_MPI_STATUS_IGNORE_OBJ; extern MPI_F08_Status MPIR_F08_MPI_STATUSES_IGNORE_OBJ[1]; extern int MPIR_F08_MPI_IN_PLACE; extern int MPIR_F08_MPI_BOTTOM; extern MPI_F08_Status *MPI_F08_STATUS_IGNORE; extern MPI_F08_Status *MPI_F08_STATUSES_IGNORE; #define MPI_THREAD_SINGLE 0 #define MPI_THREAD_FUNNELED 1 #define MPI_THREAD_SERIALIZED 2 #define MPI_THREAD_MULTIPLE 3 typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); #define MPI_SUCCESS 0 #define MPI_ERR_BUFFER 1 #define MPI_ERR_COUNT 2 #define MPI_ERR_TYPE 3 #define MPI_ERR_TAG 4 #define MPI_ERR_COMM 5 #define MPI_ERR_RANK 6 #define MPI_ERR_ROOT 7 #define MPI_ERR_TRUNCATE 14 #define MPI_ERR_GROUP 8 #define MPI_ERR_OP 9 #define MPI_ERR_REQUEST 19 #define MPI_ERR_TOPOLOGY 10 #define MPI_ERR_DIMS 11 #define MPI_ERR_ARG 12 #define MPI_ERR_OTHER 15 #define MPI_ERR_UNKNOWN 13 #define MPI_ERR_INTERN 16 #define MPI_ERR_IN_STATUS 17 #define MPI_ERR_PENDING 18 #define MPI_ERR_ACCESS 20 #define MPI_ERR_AMODE 21 #define MPI_ERR_BAD_FILE 22 #define MPI_ERR_CONVERSION 23 #define MPI_ERR_DUP_DATAREP 24 #define MPI_ERR_FILE_EXISTS 25 #define MPI_ERR_FILE_IN_USE 26 #define MPI_ERR_FILE 27 #define MPI_ERR_IO 32 #define MPI_ERR_NO_SPACE 36 #define MPI_ERR_NO_SUCH_FILE 37 #define MPI_ERR_READ_ONLY 40 #define MPI_ERR_UNSUPPORTED_DATAREP 43 #define MPI_ERR_INFO 28 #define MPI_ERR_INFO_KEY 29 #define MPI_ERR_INFO_VALUE 30 #define MPI_ERR_INFO_NOKEY 31 #define MPI_ERR_NAME 33 #define MPI_ERR_NO_MEM 34 #define MPI_ERR_NOT_SAME 35 #define MPI_ERR_PORT 38 #define MPI_ERR_QUOTA 39 #define MPI_ERR_SERVICE 41 #define MPI_ERR_SPAWN 42 #define MPI_ERR_UNSUPPORTED_OPERATION 44 #define MPI_ERR_WIN 45 #define MPI_ERR_BASE 46 #define MPI_ERR_LOCKTYPE 47 #define MPI_ERR_KEYVAL 48 #define MPI_ERR_RMA_CONFLICT 49 #define MPI_ERR_RMA_SYNC 50 #define MPI_ERR_SIZE 51 #define MPI_ERR_DISP 52 #define MPI_ERR_ASSERT 53 #define MPI_ERR_RMA_RANGE 55 #define MPI_ERR_RMA_ATTACH 56 #define MPI_ERR_RMA_SHARED 57 #define MPI_ERR_RMA_FLAVOR 58 #define MPI_T_ERR_MEMORY 59 #define MPI_T_ERR_NOT_INITIALIZED 60 #define MPI_T_ERR_CANNOT_INIT 61 #define MPI_T_ERR_INVALID_INDEX 62 #define MPI_T_ERR_INVALID_ITEM 63 #define MPI_T_ERR_INVALID_HANDLE 64 #define MPI_T_ERR_OUT_OF_HANDLES 65 #define MPI_T_ERR_OUT_OF_SESSIONS 66 #define MPI_T_ERR_INVALID_SESSION 67 #define MPI_T_ERR_CVAR_SET_NOT_NOW 68 #define MPI_T_ERR_CVAR_SET_NEVER 69 #define MPI_T_ERR_PVAR_NO_STARTSTOP 70 #define MPI_T_ERR_PVAR_NO_WRITE 71 #define MPI_T_ERR_PVAR_NO_ATOMIC 72 #define MPI_ERR_LASTCODE 0x3fffffff #define MPICH_ERR_LAST_CLASS 72 #define MPICH_ERR_FIRST_MPIX 100 #define MPIX_ERR_PROC_FAILED MPICH_ERR_FIRST_MPIX+1 #define MPIX_ERR_PROC_FAILED_PENDING MPICH_ERR_FIRST_MPIX+2 #define MPIX_ERR_REVOKED MPICH_ERR_FIRST_MPIX+3 #define MPICH_ERR_LAST_MPIX MPICH_ERR_FIRST_MPIX+3 typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); #define MPI_CONVERSION_FN_NULL ((MPI_Datarep_conversion_function *)0) # 912 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Buffer_attach(void *buffer, int size); int MPI_Buffer_detach(void *buffer_addr, int *size); int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Wait(MPI_Request *request, MPI_Status *status); int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int MPI_Request_free(MPI_Request *request); int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int MPI_Cancel(MPI_Request *request); int MPI_Test_cancelled(const MPI_Status *status, int *flag); int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Start(MPI_Request *request); int MPI_Startall(int count, MPI_Request array_of_requests[]); int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int MPI_Address(const void *location, MPI_Aint *address); int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int MPI_Type_size(MPI_Datatype datatype, int *size); int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_commit(MPI_Datatype *datatype); int MPI_Type_free(MPI_Datatype *datatype); int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int MPI_Barrier(MPI_Comm comm); int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int MPI_Op_free(MPI_Op *op); int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Group_size(MPI_Group group, int *size); int MPI_Group_rank(MPI_Group group, int *rank); int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_free(MPI_Group *group); int MPI_Comm_size(MPI_Comm comm, int *size); int MPI_Comm_rank(MPI_Comm comm, int *rank); int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int MPI_Comm_free(MPI_Comm *comm); int MPI_Comm_test_inter(MPI_Comm comm, int *flag); int MPI_Comm_remote_size(MPI_Comm comm, int *size); int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int MPI_Keyval_free(int *keyval); int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int MPI_Attr_delete(MPI_Comm comm, int keyval); int MPI_Topo_test(MPI_Comm comm, int *status); int MPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int MPI_Dims_create(int nnodes, int ndims, int dims[]); int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int MPI_Cartdim_get(MPI_Comm comm, int *ndims); int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int MPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int MPI_Get_processor_name(char *name, int *resultlen); int MPI_Get_version(int *version, int *subversion); int MPI_Get_library_version(char *version, int *resultlen); int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Errhandler_free(MPI_Errhandler *errhandler); int MPI_Error_string(int errorcode, char *string, int *resultlen); int MPI_Error_class(int errorcode, int *errorclass); double MPI_Wtime(void); double MPI_Wtick(void); int MPI_Init(int *argc, char ***argv); int MPI_Finalize(void); int MPI_Initialized(int *flag); int MPI_Abort(MPI_Comm comm, int errorcode); int MPI_Pcontrol(const int level, ...); int MPIR_Dup_fn(MPI_Comm oldcomm, int keyval, void *extra_state, void *attribute_val_in, void *attribute_val_out, int *flag); int MPI_Close_port(const char *port_name); int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_disconnect(MPI_Comm *comm); int MPI_Comm_get_parent(MPI_Comm *parent); int MPI_Comm_join(int fd, MPI_Comm *intercomm); int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int MPI_Open_port(MPI_Info info, char *port_name); int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Win_complete(MPI_Win win); int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_fence(int assert, MPI_Win win); int MPI_Win_free(MPI_Win *win); int MPI_Win_get_group(MPI_Win win, MPI_Group *group); int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); int MPI_Win_test(MPI_Win win, int *flag); int MPI_Win_unlock(int rank, MPI_Win win); int MPI_Win_wait(MPI_Win win); int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPI_Win_detach(MPI_Win win, const void *base); int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int MPI_Win_set_info(MPI_Win win, MPI_Info info); int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int MPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Win_lock_all(int assert, MPI_Win win); int MPI_Win_unlock_all(MPI_Win win); int MPI_Win_flush(int rank, MPI_Win win); int MPI_Win_flush_all(MPI_Win win); int MPI_Win_flush_local(int rank, MPI_Win win); int MPI_Win_flush_local_all(MPI_Win win); int MPI_Win_sync(MPI_Win win); int MPI_Add_error_class(int *errorclass); int MPI_Add_error_code(int errorclass, int *errorcode); int MPI_Add_error_string(int errorcode, const char *string); int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int MPI_Comm_free_keyval(int *comm_keyval); int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int MPI_File_call_errhandler(MPI_File fh, int errorcode); int MPI_Grequest_complete(MPI_Request request); int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); int MPI_Is_thread_main(int *flag); int MPI_Query_thread(int *provided); int MPI_Status_set_cancelled(MPI_Status *status, int flag); int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int MPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int MPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_free_keyval(int *type_keyval); int MPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int MPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int MPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int MPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int MPI_Win_call_errhandler(MPI_Win win, int errorcode); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int MPI_Win_delete_attr(MPI_Win win, int win_keyval); int MPI_Win_free_keyval(int *win_keyval); int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int MPI_Win_set_name(MPI_Win win, const char *win_name); int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int MPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int MPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int MPI_Finalized(int *flag); int MPI_Free_mem(void *base); int MPI_Get_address(const void *location, MPI_Aint *address); int MPI_Info_create(MPI_Info *info); int MPI_Info_delete(MPI_Info info, const char *key); int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int MPI_Info_set(MPI_Info info, const char *key, const char *value); int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int MPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int MPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int MPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int MPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int MPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int MPI_Type_create_f90_integer(int range, MPI_Datatype *newtype); int MPI_Type_create_f90_real(int precision, int range, MPI_Datatype *newtype); int MPI_Type_create_f90_complex(int precision, int range, MPI_Datatype *newtype); int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int MPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int MPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int MPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int MPI_T_init_thread(int required, int *provided); int MPI_T_finalize(void); int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int MPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int MPI_T_cvar_get_num(int *num_cvar); int MPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int MPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int MPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int MPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int MPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int MPI_T_pvar_get_num(int *num_pvar); int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int MPI_T_pvar_session_create(MPI_T_pvar_session *session); int MPI_T_pvar_session_free(MPI_T_pvar_session *session); int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_category_get_num(int *num_cat); int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); int MPI_T_category_get_categories(int cat_index, int len, int indices[]); int MPI_T_category_changed(int *stamp); int MPIX_Comm_failure_ack(MPI_Comm comm); int MPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int MPIX_Comm_revoke(MPI_Comm comm); int MPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int MPIX_Comm_agree(MPI_Comm comm, int *flag); # 1551 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Buffer_attach(void *buffer, int size); int PMPI_Buffer_detach(void *buffer_addr, int *size); int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Wait(MPI_Request *request, MPI_Status *status); int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int PMPI_Request_free(MPI_Request *request); int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int PMPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int PMPI_Cancel(MPI_Request *request); int PMPI_Test_cancelled(const MPI_Status *status, int *flag); int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Start(MPI_Request *request); int PMPI_Startall(int count, MPI_Request array_of_requests[]); int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int PMPI_Address(const void *location, MPI_Aint *address); int PMPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int PMPI_Type_size(MPI_Datatype datatype, int *size); int PMPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_commit(MPI_Datatype *datatype); int PMPI_Type_free(MPI_Datatype *datatype); int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int PMPI_Barrier(MPI_Comm comm); int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int PMPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int PMPI_Op_free(MPI_Op *op); int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Group_size(MPI_Group group, int *size); int PMPI_Group_rank(MPI_Group group, int *rank); int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_free(MPI_Group *group); int PMPI_Comm_size(MPI_Comm comm, int *size); int PMPI_Comm_rank(MPI_Comm comm, int *rank); int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int PMPI_Comm_free(MPI_Comm *comm); int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); int PMPI_Comm_remote_size(MPI_Comm comm, int *size); int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int PMPI_Keyval_free(int *keyval); int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int PMPI_Attr_delete(MPI_Comm comm, int keyval); int PMPI_Topo_test(MPI_Comm comm, int *status); int PMPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int PMPI_Dims_create(int nnodes, int ndims, int dims[]); int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int PMPI_Get_processor_name(char *name, int *resultlen); int PMPI_Get_version(int *version, int *subversion); int PMPI_Get_library_version(char *version, int *resultlen); int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Errhandler_free(MPI_Errhandler *errhandler); int PMPI_Error_string(int errorcode, char *string, int *resultlen); int PMPI_Error_class(int errorcode, int *errorclass); double PMPI_Wtime(void); double PMPI_Wtick(void); int PMPI_Init(int *argc, char ***argv); int PMPI_Finalize(void); int PMPI_Initialized(int *flag); int PMPI_Abort(MPI_Comm comm, int errorcode); int PMPI_Pcontrol(const int level, ...); int PMPI_Close_port(const char *port_name); int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_disconnect(MPI_Comm *comm); int PMPI_Comm_get_parent(MPI_Comm *parent); int PMPI_Comm_join(int fd, MPI_Comm *intercomm); int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int PMPI_Open_port(MPI_Info info, char *port_name); int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Win_complete(MPI_Win win); int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_fence(int assert, MPI_Win win); int PMPI_Win_free(MPI_Win *win); int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_test(MPI_Win win, int *flag); int PMPI_Win_unlock(int rank, MPI_Win win); int PMPI_Win_wait(MPI_Win win); int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPI_Win_detach(MPI_Win win, const void *base); int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int PMPI_Win_set_info(MPI_Win win, MPI_Info info); int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int PMPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Win_lock_all(int assert, MPI_Win win); int PMPI_Win_unlock_all(MPI_Win win); int PMPI_Win_flush(int rank, MPI_Win win); int PMPI_Win_flush_all(MPI_Win win); int PMPI_Win_flush_local(int rank, MPI_Win win); int PMPI_Win_flush_local_all(MPI_Win win); int PMPI_Win_sync(MPI_Win win); int PMPI_Add_error_class(int *errorclass); int PMPI_Add_error_code(int errorclass, int *errorcode); int PMPI_Add_error_string(int errorcode, const char *string); int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int PMPI_Comm_free_keyval(int *comm_keyval); int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int PMPI_File_call_errhandler(MPI_File fh, int errorcode); int PMPI_Grequest_complete(MPI_Request request); int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); int PMPI_Is_thread_main(int *flag); int PMPI_Query_thread(int *provided); int PMPI_Status_set_cancelled(MPI_Status *status, int flag); int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int PMPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int PMPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_free_keyval(int *type_keyval); int PMPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int PMPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int PMPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int PMPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int PMPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int PMPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); int PMPI_Win_free_keyval(int *win_keyval); int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int PMPI_Win_set_name(MPI_Win win, const char *win_name); int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int PMPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int PMPI_Finalized(int *flag); int PMPI_Free_mem(void *base); int PMPI_Get_address(const void *location, MPI_Aint *address); int PMPI_Info_create(MPI_Info *info); int PMPI_Info_delete(MPI_Info info, const char *key); int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int PMPI_Info_set(MPI_Info info, const char *key, const char *value); int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int PMPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int PMPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int PMPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int PMPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int PMPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int PMPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int PMPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int PMPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int PMPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int PMPI_T_init_thread(int required, int *provided); int PMPI_T_finalize(void); int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int PMPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int PMPI_T_cvar_get_num(int *num_cvar); int PMPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int PMPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int PMPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int PMPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int PMPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int PMPI_T_pvar_get_num(int *num_pvar); int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_category_get_num(int *num_cat); int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); int PMPI_T_category_changed(int *stamp); int PMPIX_Comm_failure_ack(MPI_Comm comm); int PMPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int PMPIX_Comm_revoke(MPI_Comm comm); int PMPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int PMPIX_Comm_agree(MPI_Comm comm, int *flag); #define MPIIMPL_ADVERTISES_FEATURES 1 #define MPIIMPL_HAVE_MPI_INFO 1 #define MPIIMPL_HAVE_MPI_COMBINER_DARRAY 1 #define MPIIMPL_HAVE_MPI_TYPE_CREATE_DARRAY 1 #define MPIIMPL_HAVE_MPI_COMBINER_SUBARRAY 1 #define MPIIMPL_HAVE_MPI_TYPE_CREATE_DARRAY 1 #define MPIIMPL_HAVE_MPI_COMBINER_DUP 1 #define MPIIMPL_HAVE_MPI_GREQUEST 1 #define MPIIMPL_HAVE_STATUS_SET_BYTES 1 #define MPIIMPL_HAVE_STATUS_SET_INFO 1 # 1 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" 1 # 11 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" #define MPIO_INCLUDE # 1 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" 1 # 14 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" 2 #define ROMIO_VERSION 126 #define HAVE_MPI_GREQUEST 1 #define MPIO_Request MPI_Request #define MPIO_USES_MPI_REQUEST #define MPIO_Wait MPI_Wait #define MPIO_Test MPI_Test #define PMPIO_Wait PMPI_Wait #define PMPIO_Test PMPI_Test #define MPIO_REQUEST_DEFINED # 62 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" #define HAVE_MPI_INFO # 71 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" #define MPI_MODE_RDONLY 2 #define MPI_MODE_RDWR 8 #define MPI_MODE_WRONLY 4 #define MPI_MODE_CREATE 1 #define MPI_MODE_EXCL 64 #define MPI_MODE_DELETE_ON_CLOSE 16 #define MPI_MODE_UNIQUE_OPEN 32 #define MPI_MODE_APPEND 128 #define MPI_MODE_SEQUENTIAL 256 #define MPI_DISPLACEMENT_CURRENT -54278278 #define MPIO_REQUEST_NULL ((MPIO_Request) 0) #define MPI_SEEK_SET 600 #define MPI_SEEK_CUR 602 #define MPI_SEEK_END 604 #define MPI_MAX_DATAREP_STRING 128 #define HAVE_MPI_DARRAY_SUBARRAY # 123 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); int MPI_File_close(MPI_File *fh); int MPI_File_delete(const char *filename, MPI_Info info); int MPI_File_set_size(MPI_File fh, MPI_Offset size); int MPI_File_preallocate(MPI_File fh, MPI_Offset size); int MPI_File_get_size(MPI_File fh, MPI_Offset *size); int MPI_File_get_group(MPI_File fh, MPI_Group *group); int MPI_File_get_amode(MPI_File fh, int *amode); int MPI_File_set_info(MPI_File fh, MPI_Info info); int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); int MPI_File_set_atomicity(MPI_File fh, int flag); int MPI_File_get_atomicity(MPI_File fh, int *flag); int MPI_File_sync(MPI_File fh); # 268 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" MPI_File MPI_File_f2c(MPI_Fint file); MPI_Fint MPI_File_c2f(MPI_File file); # 329 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" int PMPI_File_open(MPI_Comm, const char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete(const char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, const char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, const void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, const void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep(const char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 467 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 2201 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" 2 # 2222 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/mpi.h" typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int MPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int MPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int PMPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); # 4 "/tmp/petsc-W4It8W/config.packages.MPI/conftest.c" 2 int mpich_ver = 30103300; Defined "HAVE_MPICH_NUMVERSION" to "30103300" Checking for functions [MPI_Alltoallw] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language C Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' collect2: ld returned 1 exit status Popping language C Checking for functions [MPIX_Ibarrier] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_MPIX_Ibarrier': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier' collect2: ld returned 1 exit status Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:6:5: warning: unused variable ?combiner? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:6:5: warning: unused variable ?combiner? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.MPI/conftest.c:6:5: warning: unused variable ?combiner? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language C Defined "HAVE_MPICH_CH3_SOCK" to "1" Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language C Defined "HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:128) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:128) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/MPI.py:141) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:141) Checking for mpiexec Pushing language C Popping language C Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec...found Defined make macro "MPIEXEC" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/libconftest.so -shared -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.MPI/libconftest.so -shared -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.MPI/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/petsc-W4It8W/config.libraries/lib1.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/petsc-W4It8W/config.libraries/lib2.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl -ldl Testing executable /tmp/petsc-W4It8W/config.libraries/conftest to see if it can be run Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec /tmp/petsc-W4It8W/config.libraries/conftest Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec /tmp/petsc-W4It8W/config.libraries/conftest stdout: =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 17055 RUNNING AT alembic = EXIT CODE: 1 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== ERROR while running executable: Could not execute "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec /tmp/petsc-W4It8W/config.libraries/conftest": =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 17055 RUNNING AT alembic = EXIT CODE: 1 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ===================================================================================Could not find initialization function Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.pthread(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/pthread.py:19) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:19) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_pthread_create': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `pthread_create' collect2: ld returned 1 exit status Popping language C Checking for library in Compiler specific search PTHREAD: ['libpthread.a'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library ['libpthread.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lpthread -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBPTHREAD" to "1" Popping language C Checking for headers Compiler specific search PTHREAD: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.headers -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30103300 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 21 "/usr/include/pthread.h" 3 4 #define _PTHREAD_H 1 # 1 "/usr/include/features.h" 1 3 4 # 21 "/usr/include/features.h" 3 4 #define _FEATURES_H 1 # 98 "/usr/include/features.h" 3 4 #undef __USE_ISOC99 #undef __USE_ISOC95 #undef __USE_POSIX #undef __USE_POSIX2 #undef __USE_POSIX199309 #undef __USE_POSIX199506 #undef __USE_XOPEN #undef __USE_XOPEN_EXTENDED #undef __USE_UNIX98 #undef __USE_XOPEN2K #undef __USE_XOPEN2KXSI #undef __USE_XOPEN2K8 #undef __USE_XOPEN2K8XSI #undef __USE_LARGEFILE #undef __USE_LARGEFILE64 #undef __USE_FILE_OFFSET64 #undef __USE_BSD #undef __USE_SVID #undef __USE_MISC #undef __USE_ATFILE #undef __USE_GNU #undef __USE_REENTRANT #undef __USE_FORTIFY_LEVEL #undef __FAVOR_BSD #undef __KERNEL_STRICT_NAMES #define __KERNEL_STRICT_NAMES #define __USE_ANSI 1 # 141 "/usr/include/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) # 184 "/usr/include/features.h" 3 4 #define _BSD_SOURCE 1 #define _SVID_SOURCE 1 # 207 "/usr/include/features.h" 3 4 #define _POSIX_SOURCE 1 #define _POSIX_C_SOURCE 200809L #define __USE_POSIX_IMPLICITLY 1 #define __USE_POSIX 1 #define __USE_POSIX2 1 #define __USE_POSIX199309 1 #define __USE_POSIX199506 1 #define __USE_XOPEN2K 1 #undef __USE_ISOC95 #define __USE_ISOC95 1 #undef __USE_ISOC99 #define __USE_ISOC99 1 #define __USE_XOPEN2K8 1 #undef _ATFILE_SOURCE #define _ATFILE_SOURCE 1 # 289 "/usr/include/features.h" 3 4 #define __USE_MISC 1 #define __USE_BSD 1 #define __USE_SVID 1 #define __USE_ATFILE 1 # 320 "/usr/include/features.h" 3 4 #define __USE_FORTIFY_LEVEL 0 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 3 4 #define _PREDEFS_H #define __STDC_IEC_559__ 1 #define __STDC_IEC_559_COMPLEX__ 1 # 325 "/usr/include/features.h" 2 3 4 #define __STDC_ISO_10646__ 200009L #undef __GNU_LIBRARY__ #define __GNU_LIBRARY__ 6 #define __GLIBC__ 2 #define __GLIBC_MINOR__ 15 #define __GLIBC_PREREQ(maj,min) ((__GLIBC__ << 16) + __GLIBC_MINOR__ >= ((maj) << 16) + (min)) #define __GLIBC_HAVE_LONG_LONG 1 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define _SYS_CDEFS_H 1 # 36 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #undef __P #undef __PMT #define __LEAF , __leaf__ #define __LEAF_ATTR __attribute__ ((__leaf__)) # 57 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __THROW __attribute__ ((__nothrow__ __LEAF)) #define __THROWNL __attribute__ ((__nothrow__)) #define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct # 88 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __P(args) args #define __PMT(args) args #define __CONCAT(x,y) x ## y #define __STRING(x) #x #define __ptr_t void * #define __long_double_t long double #define __BEGIN_DECLS #define __END_DECLS # 128 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __BEGIN_NAMESPACE_STD #define __END_NAMESPACE_STD #define __USING_NAMESPACE_STD(name) #define __BEGIN_NAMESPACE_C99 #define __END_NAMESPACE_C99 #define __USING_NAMESPACE_C99(name) #define __bounded #define __unbounded #define __ptrvalue #define __bos(ptr) __builtin_object_size (ptr, __USE_FORTIFY_LEVEL > 1) #define __bos0(ptr) __builtin_object_size (ptr, 0) #define __warndecl(name,msg) extern void name (void) __attribute__((__warning__ (msg))) #define __warnattr(msg) __attribute__((__warning__ (msg))) #define __errordecl(name,msg) extern void name (void) __attribute__((__error__ (msg))) # 164 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __flexarr [] # 191 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __REDIRECT(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) #define __REDIRECT_NTH(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROW #define __REDIRECT_NTHNL(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROWNL #define __ASMNAME(cname) __ASMNAME2 (__USER_LABEL_PREFIX__, cname) #define __ASMNAME2(prefix,cname) __STRING (prefix) cname # 225 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_malloc__ __attribute__ ((__malloc__)) # 234 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_pure__ __attribute__ ((__pure__)) #define __attribute_const__ __attribute__ ((__const__)) # 250 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_used__ __attribute__ ((__used__)) #define __attribute_noinline__ __attribute__ ((__noinline__)) #define __attribute_deprecated__ __attribute__ ((__deprecated__)) # 271 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_arg__(x) __attribute__ ((__format_arg__ (x))) # 281 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_strfmon__(a,b) __attribute__ ((__format__ (__strfmon__, a, b))) # 290 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __nonnull(params) __attribute__ ((__nonnull__ params)) #define __attribute_warn_unused_result__ __attribute__ ((__warn_unused_result__)) # 307 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __wur #define __always_inline __inline __attribute__ ((__always_inline__)) # 330 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __extern_inline extern __inline #define __extern_always_inline extern __always_inline __attribute__ ((__artificial__)) # 343 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __va_arg_pack() __builtin_va_arg_pack () #define __va_arg_pack_len() __builtin_va_arg_pack_len () # 364 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __restrict_arr __restrict # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 400 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __LDBL_REDIR1(name,proto,alias) name proto #define __LDBL_REDIR(name,proto) name proto #define __LDBL_REDIR1_NTH(name,proto,alias) name proto __THROW #define __LDBL_REDIR_NTH(name,proto) name proto __THROW #define __LDBL_REDIR_DECL(name) #define __REDIRECT_LDBL(name,proto,alias) __REDIRECT (name, proto, alias) #define __REDIRECT_NTH_LDBL(name,proto,alias) __REDIRECT_NTH (name, proto, alias) # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 3 4 #define __stub_bdflush #define __stub_chflags #define __stub_fattach #define __stub_fchflags #define __stub_fdetach #define __stub_getmsg #define __stub_gtty #define __stub_lchmod #define __stub_putmsg #define __stub_revoke #define __stub_setlogin #define __stub_sigreturn #define __stub_sstk #define __stub_stty # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 20 "/usr/include/endian.h" 3 4 #define _ENDIAN_H 1 # 32 "/usr/include/endian.h" 3 4 #define __LITTLE_ENDIAN 1234 #define __BIG_ENDIAN 4321 #define __PDP_ENDIAN 3412 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 #define __BYTE_ORDER __LITTLE_ENDIAN # 38 "/usr/include/endian.h" 2 3 4 #define __FLOAT_WORD_ORDER __BYTE_ORDER #define LITTLE_ENDIAN __LITTLE_ENDIAN #define BIG_ENDIAN __BIG_ENDIAN #define PDP_ENDIAN __PDP_ENDIAN #define BYTE_ORDER __BYTE_ORDER #define __LONG_LONG_PAIR(HI,LO) LO, HI # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define _BITS_BYTESWAP_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 #define __bswap_constant_16(x) ((unsigned short int) ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8))) #define __bswap_16(x) (__extension__ ({ register unsigned short int __v, __x = (unsigned short int) (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_16 (__x); else __asm__ ("rorw $8, %w0" : "=r" (__v) : "0" (__x) : "cc"); __v; })) # 56 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_constant_32(x) ((((x) & 0xff000000) >> 24) | (((x) & 0x00ff0000) >> 8) | (((x) & 0x0000ff00) << 8) | (((x) & 0x000000ff) << 24)) # 69 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_32(x) (__extension__ ({ register unsigned int __v, __x = (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_32 (__x); else __asm__ ("bswap %0" : "=r" (__v) : "0" (__x)); __v; })) # 101 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_constant_64(x) (__extension__ ((((x) & 0xff00000000000000ull) >> 56) | (((x) & 0x00ff000000000000ull) >> 40) | (((x) & 0x0000ff0000000000ull) >> 24) | (((x) & 0x000000ff00000000ull) >> 8) | (((x) & 0x00000000ff000000ull) << 8) | (((x) & 0x0000000000ff0000ull) << 24) | (((x) & 0x000000000000ff00ull) << 40) | (((x) & 0x00000000000000ffull) << 56))) # 112 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_64(x) (__extension__ ({ register unsigned long __v, __x = (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_64 (__x); else __asm__ ("bswap %q0" : "=r" (__v) : "0" (__x)); __v; })) # 62 "/usr/include/endian.h" 2 3 4 #define htobe16(x) __bswap_16 (x) #define htole16(x) (x) #define be16toh(x) __bswap_16 (x) #define le16toh(x) (x) #define htobe32(x) __bswap_32 (x) #define htole32(x) (x) #define be32toh(x) __bswap_32 (x) #define le32toh(x) (x) #define htobe64(x) __bswap_64 (x) #define htole64(x) (x) #define be64toh(x) __bswap_64 (x) #define le64toh(x) (x) # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 22 "/usr/include/sched.h" 3 4 #define _SCHED_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define _BITS_TYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 99 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define __S16_TYPE short int #define __U16_TYPE unsigned short int #define __S32_TYPE int #define __U32_TYPE unsigned int #define __SLONGWORD_TYPE long int #define __ULONGWORD_TYPE unsigned long int # 118 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define __SQUAD_TYPE long int #define __UQUAD_TYPE unsigned long int #define __SWORD_TYPE long int #define __UWORD_TYPE unsigned long int #define __SLONG32_TYPE int #define __ULONG32_TYPE unsigned int #define __S64_TYPE long int #define __U64_TYPE unsigned long int #define __STD_TYPE typedef # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 3 4 #define _BITS_TYPESIZES_H 1 #define __DEV_T_TYPE __UQUAD_TYPE #define __UID_T_TYPE __U32_TYPE #define __GID_T_TYPE __U32_TYPE #define __INO_T_TYPE __ULONGWORD_TYPE #define __INO64_T_TYPE __UQUAD_TYPE #define __MODE_T_TYPE __U32_TYPE #define __NLINK_T_TYPE __UWORD_TYPE #define __OFF_T_TYPE __SLONGWORD_TYPE #define __OFF64_T_TYPE __SQUAD_TYPE #define __PID_T_TYPE __S32_TYPE #define __RLIM_T_TYPE __ULONGWORD_TYPE #define __RLIM64_T_TYPE __UQUAD_TYPE #define __BLKCNT_T_TYPE __SLONGWORD_TYPE #define __BLKCNT64_T_TYPE __SQUAD_TYPE #define __FSBLKCNT_T_TYPE __ULONGWORD_TYPE #define __FSBLKCNT64_T_TYPE __UQUAD_TYPE #define __FSFILCNT_T_TYPE __ULONGWORD_TYPE #define __FSFILCNT64_T_TYPE __UQUAD_TYPE #define __ID_T_TYPE __U32_TYPE #define __CLOCK_T_TYPE __SLONGWORD_TYPE #define __TIME_T_TYPE __SLONGWORD_TYPE #define __USECONDS_T_TYPE __U32_TYPE #define __SUSECONDS_T_TYPE __SLONGWORD_TYPE #define __DADDR_T_TYPE __S32_TYPE #define __SWBLK_T_TYPE __SLONGWORD_TYPE #define __KEY_T_TYPE __S32_TYPE #define __CLOCKID_T_TYPE __S32_TYPE #define __TIMER_T_TYPE void * #define __BLKSIZE_T_TYPE __SLONGWORD_TYPE #define __FSID_T_TYPE struct { int __val[2]; } #define __SSIZE_T_TYPE __SWORD_TYPE #define __FD_SETSIZE 1024 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; #undef __STD_TYPE # 28 "/usr/include/sched.h" 2 3 4 #define __need_size_t # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 187 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 408 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_NULL # 31 "/usr/include/sched.h" 2 3 4 #define __need_time_t #define __need_timespec # 1 "/usr/include/time.h" 1 3 4 # 67 "/usr/include/time.h" 3 4 #undef __need_clock_t #define __time_t_defined 1 typedef __time_t time_t; #undef __need_time_t # 95 "/usr/include/time.h" 3 4 #undef __clockid_time_t # 107 "/usr/include/time.h" 3 4 #undef __need_timer_t #define __timespec_defined 1 struct timespec { __time_t tv_sec; long int tv_nsec; }; #undef __need_timespec # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; #define __pid_t_defined # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 #define SCHED_OTHER 0 #define SCHED_FIFO 1 #define SCHED_RR 2 # 74 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 97 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 #define __defined_schedparam 1 struct __sched_param { int __sched_priority; }; #undef __need_schedparam #define __cpu_set_t_defined #define __CPU_SETSIZE 1024 #define __NCPUBITS (8 * sizeof (__cpu_mask)) typedef unsigned long int __cpu_mask; #define __CPUELT(cpu) ((cpu) / __NCPUBITS) #define __CPUMASK(cpu) ((__cpu_mask) 1 << ((cpu) % __NCPUBITS)) typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; #define __CPU_ZERO_S(setsize,cpusetp) do __builtin_memset (cpusetp, '\0', setsize); while (0) # 146 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 #define __CPU_SET_S(cpu,setsize,cpusetp) (__extension__ ({ size_t __cpu = (cpu); __cpu < 8 * (setsize) ? (((__cpu_mask *) ((cpusetp)->__bits))[__CPUELT (__cpu)] |= __CPUMASK (__cpu)) : 0; })) #define __CPU_CLR_S(cpu,setsize,cpusetp) (__extension__ ({ size_t __cpu = (cpu); __cpu < 8 * (setsize) ? (((__cpu_mask *) ((cpusetp)->__bits))[__CPUELT (__cpu)] &= ~__CPUMASK (__cpu)) : 0; })) #define __CPU_ISSET_S(cpu,setsize,cpusetp) (__extension__ ({ size_t __cpu = (cpu); __cpu < 8 * (setsize) ? ((((__const __cpu_mask *) ((cpusetp)->__bits))[__CPUELT (__cpu)] & __CPUMASK (__cpu))) != 0 : 0; })) #define __CPU_COUNT_S(setsize,cpusetp) __sched_cpucount (setsize, cpusetp) #define __CPU_EQUAL_S(setsize,cpusetp1,cpusetp2) (__builtin_memcmp (cpusetp1, cpusetp2, setsize) == 0) # 187 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 #define __CPU_OP_S(setsize,destset,srcset1,srcset2,op) (__extension__ ({ cpu_set_t *__dest = (destset); __const __cpu_mask *__arr1 = (srcset1)->__bits; __const __cpu_mask *__arr2 = (srcset2)->__bits; size_t __imax = (setsize) / sizeof (__cpu_mask); size_t __i; for (__i = 0; __i < __imax; ++__i) ((__cpu_mask *) __dest->__bits)[__i] = __arr1[__i] op __arr2[__i]; __dest; })) # 198 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 #define __CPU_ALLOC_SIZE(count) ((((count) + __NCPUBITS - 1) / __NCPUBITS) * sizeof (__cpu_mask)) #define __CPU_ALLOC(count) __sched_cpualloc (count) #define __CPU_FREE(cpuset) __sched_cpufree (cpuset) extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 #define sched_priority __sched_priority extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 26 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 #define _TIME_H 1 #define __need_size_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 41 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #define _BITS_TIME_H 1 #define CLOCKS_PER_SEC 1000000l # 61 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #define CLOCK_REALTIME 0 #define CLOCK_MONOTONIC 1 #define CLOCK_PROCESS_CPUTIME_ID 2 #define CLOCK_THREAD_CPUTIME_ID 3 #define CLOCK_MONOTONIC_RAW 4 #define CLOCK_REALTIME_COARSE 5 #define CLOCK_MONOTONIC_COARSE 6 #define CLOCK_BOOTTIME 7 #define CLOCK_REALTIME_ALARM 8 #define CLOCK_BOOTTIME_ALARM 9 #define TIMER_ABSTIME 1 # 99 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #undef __need_timeval # 43 "/usr/include/time.h" 2 3 4 # 54 "/usr/include/time.h" 3 4 #define __clock_t_defined 1 typedef __clock_t clock_t; #undef __need_clock_t # 83 "/usr/include/time.h" 3 4 #undef __need_time_t #define __clockid_t_defined 1 typedef __clockid_t clockid_t; #undef __clockid_time_t #define __timer_t_defined 1 typedef __timer_t timer_t; #undef __need_timer_t # 127 "/usr/include/time.h" 3 4 #undef __need_timespec struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 22 "/usr/include/xlocale.h" 3 4 #define _XLOCALE_H 1 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); #define __isleap(year) ((year) % 4 == 0 && ((year) % 100 != 0 || (year) % 400 == 0)) # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 #define _BITS_PTHREADTYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 #define __SIZEOF_PTHREAD_ATTR_T 56 #define __SIZEOF_PTHREAD_MUTEX_T 40 #define __SIZEOF_PTHREAD_MUTEXATTR_T 4 #define __SIZEOF_PTHREAD_COND_T 48 #define __SIZEOF_PTHREAD_CONDATTR_T 4 #define __SIZEOF_PTHREAD_RWLOCK_T 56 #define __SIZEOF_PTHREAD_RWLOCKATTR_T 8 #define __SIZEOF_PTHREAD_BARRIER_T 32 #define __SIZEOF_PTHREAD_BARRIERATTR_T 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; #define __PTHREAD_MUTEX_HAVE_PREV 1 # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 #define _BITS_SETJMP_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 28 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 31 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, #define PTHREAD_CREATE_JOINABLE PTHREAD_CREATE_JOINABLE PTHREAD_CREATE_DETACHED #define PTHREAD_CREATE_DETACHED PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; # 89 "/usr/include/pthread.h" 3 4 #define PTHREAD_MUTEX_INITIALIZER { { 0, 0, 0, 0, 0, 0, { 0, 0 } } } # 115 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; #define PTHREAD_RWLOCK_INITIALIZER { { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 } } # 147 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, #define PTHREAD_INHERIT_SCHED PTHREAD_INHERIT_SCHED PTHREAD_EXPLICIT_SCHED #define PTHREAD_EXPLICIT_SCHED PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, #define PTHREAD_SCOPE_SYSTEM PTHREAD_SCOPE_SYSTEM PTHREAD_SCOPE_PROCESS #define PTHREAD_SCOPE_PROCESS PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, #define PTHREAD_PROCESS_PRIVATE PTHREAD_PROCESS_PRIVATE PTHREAD_PROCESS_SHARED #define PTHREAD_PROCESS_SHARED PTHREAD_PROCESS_SHARED }; #define PTHREAD_COND_INITIALIZER { { 0, 0, 0, 0, 0, (void *) 0, 0, 0 } } struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, #define PTHREAD_CANCEL_ENABLE PTHREAD_CANCEL_ENABLE PTHREAD_CANCEL_DISABLE #define PTHREAD_CANCEL_DISABLE PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, #define PTHREAD_CANCEL_DEFERRED PTHREAD_CANCEL_DEFERRED PTHREAD_CANCEL_ASYNCHRONOUS #define PTHREAD_CANCEL_ASYNCHRONOUS PTHREAD_CANCEL_ASYNCHRONOUS }; #define PTHREAD_CANCELED ((void *) -1) #define PTHREAD_ONCE_INIT 0 #define PTHREAD_BARRIER_SERIAL_THREAD -1 extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 263 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 413 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 478 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 490 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); #define __cleanup_fct_attribute struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 648 "/usr/include/pthread.h" 3 4 #define pthread_cleanup_push(routine,arg) do { __pthread_unwind_buf_t __cancel_buf; void (*__cancel_routine) (void *) = (routine); void *__cancel_arg = (arg); int __not_first_call = __sigsetjmp ((struct __jmp_buf_tag *) (void *) __cancel_buf.__cancel_jmp_buf, 0); if (__builtin_expect (__not_first_call, 0)) { __cancel_routine (__cancel_arg); __pthread_unwind_next (&__cancel_buf); } __pthread_register_cancel (&__cancel_buf); do { # 664 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; #define pthread_cleanup_pop(execute) do { } while (0); } while (0); __pthread_unregister_cancel (&__cancel_buf); if (execute) __cancel_routine (__cancel_arg); } while (0) extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 717 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 790 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (__const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 872 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 984 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1028 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1095 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1129 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); # 1143 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Popping language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.packages.pthread Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.pthread/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.pthread/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.pthread/conftest.c:6:20: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.pthread/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.pthread/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.pthread/conftest.c:6:12: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.packages.pthread /tmp/petsc-W4It8W/config.packages.pthread/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.packages.pthread/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.packages.pthread/conftest.c" # 1 "/tmp/petsc-W4It8W/config.packages.pthread/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30103300 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 # 2 "/tmp/petsc-W4It8W/config.packages.pthread/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.packages.pthread/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.packages.pthread/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 1 3 4 # 20 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 3 4 #define _SYS_SYSCTL_H 1 # 1 "/usr/include/features.h" 1 3 4 # 21 "/usr/include/features.h" 3 4 #define _FEATURES_H 1 # 98 "/usr/include/features.h" 3 4 #undef __USE_ISOC99 #undef __USE_ISOC95 #undef __USE_POSIX #undef __USE_POSIX2 #undef __USE_POSIX199309 #undef __USE_POSIX199506 #undef __USE_XOPEN #undef __USE_XOPEN_EXTENDED #undef __USE_UNIX98 #undef __USE_XOPEN2K #undef __USE_XOPEN2KXSI #undef __USE_XOPEN2K8 #undef __USE_XOPEN2K8XSI #undef __USE_LARGEFILE #undef __USE_LARGEFILE64 #undef __USE_FILE_OFFSET64 #undef __USE_BSD #undef __USE_SVID #undef __USE_MISC #undef __USE_ATFILE #undef __USE_GNU #undef __USE_REENTRANT #undef __USE_FORTIFY_LEVEL #undef __FAVOR_BSD #undef __KERNEL_STRICT_NAMES #define __KERNEL_STRICT_NAMES #define __USE_ANSI 1 # 141 "/usr/include/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) # 184 "/usr/include/features.h" 3 4 #define _BSD_SOURCE 1 #define _SVID_SOURCE 1 # 207 "/usr/include/features.h" 3 4 #define _POSIX_SOURCE 1 #define _POSIX_C_SOURCE 200809L #define __USE_POSIX_IMPLICITLY 1 #define __USE_POSIX 1 #define __USE_POSIX2 1 #define __USE_POSIX199309 1 #define __USE_POSIX199506 1 #define __USE_XOPEN2K 1 #undef __USE_ISOC95 #define __USE_ISOC95 1 #undef __USE_ISOC99 #define __USE_ISOC99 1 #define __USE_XOPEN2K8 1 #undef _ATFILE_SOURCE #define _ATFILE_SOURCE 1 # 289 "/usr/include/features.h" 3 4 #define __USE_MISC 1 #define __USE_BSD 1 #define __USE_SVID 1 #define __USE_ATFILE 1 # 320 "/usr/include/features.h" 3 4 #define __USE_FORTIFY_LEVEL 0 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 3 4 #define _PREDEFS_H #define __STDC_IEC_559__ 1 #define __STDC_IEC_559_COMPLEX__ 1 # 325 "/usr/include/features.h" 2 3 4 #define __STDC_ISO_10646__ 200009L #undef __GNU_LIBRARY__ #define __GNU_LIBRARY__ 6 #define __GLIBC__ 2 #define __GLIBC_MINOR__ 15 #define __GLIBC_PREREQ(maj,min) ((__GLIBC__ << 16) + __GLIBC_MINOR__ >= ((maj) << 16) + (min)) #define __GLIBC_HAVE_LONG_LONG 1 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define _SYS_CDEFS_H 1 # 36 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #undef __P #undef __PMT #define __LEAF , __leaf__ #define __LEAF_ATTR __attribute__ ((__leaf__)) # 57 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __THROW __attribute__ ((__nothrow__ __LEAF)) #define __THROWNL __attribute__ ((__nothrow__)) #define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct # 88 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __P(args) args #define __PMT(args) args #define __CONCAT(x,y) x ## y #define __STRING(x) #x #define __ptr_t void * #define __long_double_t long double #define __BEGIN_DECLS #define __END_DECLS # 128 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __BEGIN_NAMESPACE_STD #define __END_NAMESPACE_STD #define __USING_NAMESPACE_STD(name) #define __BEGIN_NAMESPACE_C99 #define __END_NAMESPACE_C99 #define __USING_NAMESPACE_C99(name) #define __bounded #define __unbounded #define __ptrvalue #define __bos(ptr) __builtin_object_size (ptr, __USE_FORTIFY_LEVEL > 1) #define __bos0(ptr) __builtin_object_size (ptr, 0) #define __warndecl(name,msg) extern void name (void) __attribute__((__warning__ (msg))) #define __warnattr(msg) __attribute__((__warning__ (msg))) #define __errordecl(name,msg) extern void name (void) __attribute__((__error__ (msg))) # 164 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __flexarr [] # 191 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __REDIRECT(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) #define __REDIRECT_NTH(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROW #define __REDIRECT_NTHNL(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROWNL #define __ASMNAME(cname) __ASMNAME2 (__USER_LABEL_PREFIX__, cname) #define __ASMNAME2(prefix,cname) __STRING (prefix) cname # 225 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_malloc__ __attribute__ ((__malloc__)) # 234 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_pure__ __attribute__ ((__pure__)) #define __attribute_const__ __attribute__ ((__const__)) # 250 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_used__ __attribute__ ((__used__)) #define __attribute_noinline__ __attribute__ ((__noinline__)) #define __attribute_deprecated__ __attribute__ ((__deprecated__)) # 271 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_arg__(x) __attribute__ ((__format_arg__ (x))) # 281 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_strfmon__(a,b) __attribute__ ((__format__ (__strfmon__, a, b))) # 290 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __nonnull(params) __attribute__ ((__nonnull__ params)) #define __attribute_warn_unused_result__ __attribute__ ((__warn_unused_result__)) # 307 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __wur #define __always_inline __inline __attribute__ ((__always_inline__)) # 330 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __extern_inline extern __inline #define __extern_always_inline extern __always_inline __attribute__ ((__artificial__)) # 343 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __va_arg_pack() __builtin_va_arg_pack () #define __va_arg_pack_len() __builtin_va_arg_pack_len () # 364 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __restrict_arr __restrict # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 400 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __LDBL_REDIR1(name,proto,alias) name proto #define __LDBL_REDIR(name,proto) name proto #define __LDBL_REDIR1_NTH(name,proto,alias) name proto __THROW #define __LDBL_REDIR_NTH(name,proto) name proto __THROW #define __LDBL_REDIR_DECL(name) #define __REDIRECT_LDBL(name,proto,alias) __REDIRECT (name, proto, alias) #define __REDIRECT_NTH_LDBL(name,proto,alias) __REDIRECT_NTH (name, proto, alias) # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 3 4 #define __stub_bdflush #define __stub_chflags #define __stub_fattach #define __stub_fchflags #define __stub_fdetach #define __stub_getmsg #define __stub_gtty #define __stub_lchmod #define __stub_putmsg #define __stub_revoke #define __stub_setlogin #define __stub_sigreturn #define __stub_sstk #define __stub_stty # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 #define __need_size_t # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 187 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 408 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_NULL # 25 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 #define _LINUX_KERNEL_H 1 #define __undef_LINUX_KERNEL_H #define _LINUX_TYPES_H 1 #define __undef_LINUX_TYPES_H #define _LINUX_LIST_H 1 #define __undef_LINUX_LIST_H #define __LINUX_COMPILER_H 1 #define __user #define __undef__LINUX_COMPILER_H # 1 "/usr/include/linux/sysctl.h" 1 3 4 # 23 "/usr/include/linux/sysctl.h" 3 4 #define _LINUX_SYSCTL_H # 1 "/usr/include/linux/kernel.h" 1 3 4 # 26 "/usr/include/linux/sysctl.h" 2 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 27 "/usr/include/linux/sysctl.h" 2 3 4 struct completion; #define CTL_MAXNAME 10 struct __sysctl_args { int *name; int nlen; void *oldval; size_t *oldlenp; void *newval; size_t newlen; unsigned long __unused[4]; }; enum { CTL_KERN=1, CTL_VM=2, CTL_NET=3, CTL_PROC=4, CTL_FS=5, CTL_DEBUG=6, CTL_DEV=7, CTL_BUS=8, CTL_ABI=9, CTL_CPU=10, CTL_ARLAN=254, CTL_S390DBF=5677, CTL_SUNRPC=7249, CTL_PM=9899, CTL_FRV=9898, }; enum { CTL_BUS_ISA=1 }; enum { INOTIFY_MAX_USER_INSTANCES=1, INOTIFY_MAX_USER_WATCHES=2, INOTIFY_MAX_QUEUED_EVENTS=3 }; enum { KERN_OSTYPE=1, KERN_OSRELEASE=2, KERN_OSREV=3, KERN_VERSION=4, KERN_SECUREMASK=5, KERN_PROF=6, KERN_NODENAME=7, KERN_DOMAINNAME=8, KERN_PANIC=15, KERN_REALROOTDEV=16, KERN_SPARC_REBOOT=21, KERN_CTLALTDEL=22, KERN_PRINTK=23, KERN_NAMETRANS=24, KERN_PPC_HTABRECLAIM=25, KERN_PPC_ZEROPAGED=26, KERN_PPC_POWERSAVE_NAP=27, KERN_MODPROBE=28, KERN_SG_BIG_BUFF=29, KERN_ACCT=30, KERN_PPC_L2CR=31, KERN_RTSIGNR=32, KERN_RTSIGMAX=33, KERN_SHMMAX=34, KERN_MSGMAX=35, KERN_MSGMNB=36, KERN_MSGPOOL=37, KERN_SYSRQ=38, KERN_MAX_THREADS=39, KERN_RANDOM=40, KERN_SHMALL=41, KERN_MSGMNI=42, KERN_SEM=43, KERN_SPARC_STOP_A=44, KERN_SHMMNI=45, KERN_OVERFLOWUID=46, KERN_OVERFLOWGID=47, KERN_SHMPATH=48, KERN_HOTPLUG=49, KERN_IEEE_EMULATION_WARNINGS=50, KERN_S390_USER_DEBUG_LOGGING=51, KERN_CORE_USES_PID=52, KERN_TAINTED=53, KERN_CADPID=54, KERN_PIDMAX=55, KERN_CORE_PATTERN=56, KERN_PANIC_ON_OOPS=57, KERN_HPPA_PWRSW=58, KERN_HPPA_UNALIGNED=59, KERN_PRINTK_RATELIMIT=60, KERN_PRINTK_RATELIMIT_BURST=61, KERN_PTY=62, KERN_NGROUPS_MAX=63, KERN_SPARC_SCONS_PWROFF=64, KERN_HZ_TIMER=65, KERN_UNKNOWN_NMI_PANIC=66, KERN_BOOTLOADER_TYPE=67, KERN_RANDOMIZE=68, KERN_SETUID_DUMPABLE=69, KERN_SPIN_RETRY=70, KERN_ACPI_VIDEO_FLAGS=71, KERN_IA64_UNALIGNED=72, KERN_COMPAT_LOG=73, KERN_MAX_LOCK_DEPTH=74, KERN_NMI_WATCHDOG=75, KERN_PANIC_ON_NMI=76, }; enum { VM_UNUSED1=1, VM_UNUSED2=2, VM_UNUSED3=3, VM_UNUSED4=4, VM_OVERCOMMIT_MEMORY=5, VM_UNUSED5=6, VM_UNUSED7=7, VM_UNUSED8=8, VM_UNUSED9=9, VM_PAGE_CLUSTER=10, VM_DIRTY_BACKGROUND=11, VM_DIRTY_RATIO=12, VM_DIRTY_WB_CS=13, VM_DIRTY_EXPIRE_CS=14, VM_NR_PDFLUSH_THREADS=15, VM_OVERCOMMIT_RATIO=16, VM_PAGEBUF=17, VM_HUGETLB_PAGES=18, VM_SWAPPINESS=19, VM_LOWMEM_RESERVE_RATIO=20, VM_MIN_FREE_KBYTES=21, VM_MAX_MAP_COUNT=22, VM_LAPTOP_MODE=23, VM_BLOCK_DUMP=24, VM_HUGETLB_GROUP=25, VM_VFS_CACHE_PRESSURE=26, VM_LEGACY_VA_LAYOUT=27, VM_SWAP_TOKEN_TIMEOUT=28, VM_DROP_PAGECACHE=29, VM_PERCPU_PAGELIST_FRACTION=30, VM_ZONE_RECLAIM_MODE=31, VM_MIN_UNMAPPED=32, VM_PANIC_ON_OOM=33, VM_VDSO_ENABLED=34, VM_MIN_SLAB=35, }; enum { NET_CORE=1, NET_ETHER=2, NET_802=3, NET_UNIX=4, NET_IPV4=5, NET_IPX=6, NET_ATALK=7, NET_NETROM=8, NET_AX25=9, NET_BRIDGE=10, NET_ROSE=11, NET_IPV6=12, NET_X25=13, NET_TR=14, NET_DECNET=15, NET_ECONET=16, NET_SCTP=17, NET_LLC=18, NET_NETFILTER=19, NET_DCCP=20, NET_IRDA=412, }; enum { RANDOM_POOLSIZE=1, RANDOM_ENTROPY_COUNT=2, RANDOM_READ_THRESH=3, RANDOM_WRITE_THRESH=4, RANDOM_BOOT_ID=5, RANDOM_UUID=6 }; enum { PTY_MAX=1, PTY_NR=2 }; enum { BUS_ISA_MEM_BASE=1, BUS_ISA_PORT_BASE=2, BUS_ISA_PORT_SHIFT=3 }; enum { NET_CORE_WMEM_MAX=1, NET_CORE_RMEM_MAX=2, NET_CORE_WMEM_DEFAULT=3, NET_CORE_RMEM_DEFAULT=4, NET_CORE_MAX_BACKLOG=6, NET_CORE_FASTROUTE=7, NET_CORE_MSG_COST=8, NET_CORE_MSG_BURST=9, NET_CORE_OPTMEM_MAX=10, NET_CORE_HOT_LIST_LENGTH=11, NET_CORE_DIVERT_VERSION=12, NET_CORE_NO_CONG_THRESH=13, NET_CORE_NO_CONG=14, NET_CORE_LO_CONG=15, NET_CORE_MOD_CONG=16, NET_CORE_DEV_WEIGHT=17, NET_CORE_SOMAXCONN=18, NET_CORE_BUDGET=19, NET_CORE_AEVENT_ETIME=20, NET_CORE_AEVENT_RSEQTH=21, NET_CORE_WARNINGS=22, }; enum { NET_UNIX_DESTROY_DELAY=1, NET_UNIX_DELETE_DELAY=2, NET_UNIX_MAX_DGRAM_QLEN=3, }; enum { NET_NF_CONNTRACK_MAX=1, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_NF_CONNTRACK_UDP_TIMEOUT=10, NET_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_NF_CONNTRACK_BUCKETS=14, NET_NF_CONNTRACK_LOG_INVALID=15, NET_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_NF_CONNTRACK_TCP_LOOSE=17, NET_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_NF_CONNTRACK_COUNT=27, NET_NF_CONNTRACK_ICMPV6_TIMEOUT=28, NET_NF_CONNTRACK_FRAG6_TIMEOUT=29, NET_NF_CONNTRACK_FRAG6_LOW_THRESH=30, NET_NF_CONNTRACK_FRAG6_HIGH_THRESH=31, NET_NF_CONNTRACK_CHECKSUM=32, }; enum { NET_IPV4_FORWARD=8, NET_IPV4_DYNADDR=9, NET_IPV4_CONF=16, NET_IPV4_NEIGH=17, NET_IPV4_ROUTE=18, NET_IPV4_FIB_HASH=19, NET_IPV4_NETFILTER=20, NET_IPV4_TCP_TIMESTAMPS=33, NET_IPV4_TCP_WINDOW_SCALING=34, NET_IPV4_TCP_SACK=35, NET_IPV4_TCP_RETRANS_COLLAPSE=36, NET_IPV4_DEFAULT_TTL=37, NET_IPV4_AUTOCONFIG=38, NET_IPV4_NO_PMTU_DISC=39, NET_IPV4_TCP_SYN_RETRIES=40, NET_IPV4_IPFRAG_HIGH_THRESH=41, NET_IPV4_IPFRAG_LOW_THRESH=42, NET_IPV4_IPFRAG_TIME=43, NET_IPV4_TCP_MAX_KA_PROBES=44, NET_IPV4_TCP_KEEPALIVE_TIME=45, NET_IPV4_TCP_KEEPALIVE_PROBES=46, NET_IPV4_TCP_RETRIES1=47, NET_IPV4_TCP_RETRIES2=48, NET_IPV4_TCP_FIN_TIMEOUT=49, NET_IPV4_IP_MASQ_DEBUG=50, NET_TCP_SYNCOOKIES=51, NET_TCP_STDURG=52, NET_TCP_RFC1337=53, NET_TCP_SYN_TAILDROP=54, NET_TCP_MAX_SYN_BACKLOG=55, NET_IPV4_LOCAL_PORT_RANGE=56, NET_IPV4_ICMP_ECHO_IGNORE_ALL=57, NET_IPV4_ICMP_ECHO_IGNORE_BROADCASTS=58, NET_IPV4_ICMP_SOURCEQUENCH_RATE=59, NET_IPV4_ICMP_DESTUNREACH_RATE=60, NET_IPV4_ICMP_TIMEEXCEED_RATE=61, NET_IPV4_ICMP_PARAMPROB_RATE=62, NET_IPV4_ICMP_ECHOREPLY_RATE=63, NET_IPV4_ICMP_IGNORE_BOGUS_ERROR_RESPONSES=64, NET_IPV4_IGMP_MAX_MEMBERSHIPS=65, NET_TCP_TW_RECYCLE=66, NET_IPV4_ALWAYS_DEFRAG=67, NET_IPV4_TCP_KEEPALIVE_INTVL=68, NET_IPV4_INET_PEER_THRESHOLD=69, NET_IPV4_INET_PEER_MINTTL=70, NET_IPV4_INET_PEER_MAXTTL=71, NET_IPV4_INET_PEER_GC_MINTIME=72, NET_IPV4_INET_PEER_GC_MAXTIME=73, NET_TCP_ORPHAN_RETRIES=74, NET_TCP_ABORT_ON_OVERFLOW=75, NET_TCP_SYNACK_RETRIES=76, NET_TCP_MAX_ORPHANS=77, NET_TCP_MAX_TW_BUCKETS=78, NET_TCP_FACK=79, NET_TCP_REORDERING=80, NET_TCP_ECN=81, NET_TCP_DSACK=82, NET_TCP_MEM=83, NET_TCP_WMEM=84, NET_TCP_RMEM=85, NET_TCP_APP_WIN=86, NET_TCP_ADV_WIN_SCALE=87, NET_IPV4_NONLOCAL_BIND=88, NET_IPV4_ICMP_RATELIMIT=89, NET_IPV4_ICMP_RATEMASK=90, NET_TCP_TW_REUSE=91, NET_TCP_FRTO=92, NET_TCP_LOW_LATENCY=93, NET_IPV4_IPFRAG_SECRET_INTERVAL=94, NET_IPV4_IGMP_MAX_MSF=96, NET_TCP_NO_METRICS_SAVE=97, NET_TCP_DEFAULT_WIN_SCALE=105, NET_TCP_MODERATE_RCVBUF=106, NET_TCP_TSO_WIN_DIVISOR=107, NET_TCP_BIC_BETA=108, NET_IPV4_ICMP_ERRORS_USE_INBOUND_IFADDR=109, NET_TCP_CONG_CONTROL=110, NET_TCP_ABC=111, NET_IPV4_IPFRAG_MAX_DIST=112, NET_TCP_MTU_PROBING=113, NET_TCP_BASE_MSS=114, NET_IPV4_TCP_WORKAROUND_SIGNED_WINDOWS=115, NET_TCP_DMA_COPYBREAK=116, NET_TCP_SLOW_START_AFTER_IDLE=117, NET_CIPSOV4_CACHE_ENABLE=118, NET_CIPSOV4_CACHE_BUCKET_SIZE=119, NET_CIPSOV4_RBM_OPTFMT=120, NET_CIPSOV4_RBM_STRICTVALID=121, NET_TCP_AVAIL_CONG_CONTROL=122, NET_TCP_ALLOWED_CONG_CONTROL=123, NET_TCP_MAX_SSTHRESH=124, NET_TCP_FRTO_RESPONSE=125, }; enum { NET_IPV4_ROUTE_FLUSH=1, NET_IPV4_ROUTE_MIN_DELAY=2, NET_IPV4_ROUTE_MAX_DELAY=3, NET_IPV4_ROUTE_GC_THRESH=4, NET_IPV4_ROUTE_MAX_SIZE=5, NET_IPV4_ROUTE_GC_MIN_INTERVAL=6, NET_IPV4_ROUTE_GC_TIMEOUT=7, NET_IPV4_ROUTE_GC_INTERVAL=8, NET_IPV4_ROUTE_REDIRECT_LOAD=9, NET_IPV4_ROUTE_REDIRECT_NUMBER=10, NET_IPV4_ROUTE_REDIRECT_SILENCE=11, NET_IPV4_ROUTE_ERROR_COST=12, NET_IPV4_ROUTE_ERROR_BURST=13, NET_IPV4_ROUTE_GC_ELASTICITY=14, NET_IPV4_ROUTE_MTU_EXPIRES=15, NET_IPV4_ROUTE_MIN_PMTU=16, NET_IPV4_ROUTE_MIN_ADVMSS=17, NET_IPV4_ROUTE_SECRET_INTERVAL=18, NET_IPV4_ROUTE_GC_MIN_INTERVAL_MS=19, }; enum { NET_PROTO_CONF_ALL=-2, NET_PROTO_CONF_DEFAULT=-3 }; enum { NET_IPV4_CONF_FORWARDING=1, NET_IPV4_CONF_MC_FORWARDING=2, NET_IPV4_CONF_PROXY_ARP=3, NET_IPV4_CONF_ACCEPT_REDIRECTS=4, NET_IPV4_CONF_SECURE_REDIRECTS=5, NET_IPV4_CONF_SEND_REDIRECTS=6, NET_IPV4_CONF_SHARED_MEDIA=7, NET_IPV4_CONF_RP_FILTER=8, NET_IPV4_CONF_ACCEPT_SOURCE_ROUTE=9, NET_IPV4_CONF_BOOTP_RELAY=10, NET_IPV4_CONF_LOG_MARTIANS=11, NET_IPV4_CONF_TAG=12, NET_IPV4_CONF_ARPFILTER=13, NET_IPV4_CONF_MEDIUM_ID=14, NET_IPV4_CONF_NOXFRM=15, NET_IPV4_CONF_NOPOLICY=16, NET_IPV4_CONF_FORCE_IGMP_VERSION=17, NET_IPV4_CONF_ARP_ANNOUNCE=18, NET_IPV4_CONF_ARP_IGNORE=19, NET_IPV4_CONF_PROMOTE_SECONDARIES=20, NET_IPV4_CONF_ARP_ACCEPT=21, NET_IPV4_CONF_ARP_NOTIFY=22, }; enum { NET_IPV4_NF_CONNTRACK_MAX=1, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT=10, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_IPV4_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_IPV4_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_IPV4_NF_CONNTRACK_BUCKETS=14, NET_IPV4_NF_CONNTRACK_LOG_INVALID=15, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_IPV4_NF_CONNTRACK_TCP_LOOSE=17, NET_IPV4_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_IPV4_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_IPV4_NF_CONNTRACK_COUNT=27, NET_IPV4_NF_CONNTRACK_CHECKSUM=28, }; enum { NET_IPV6_CONF=16, NET_IPV6_NEIGH=17, NET_IPV6_ROUTE=18, NET_IPV6_ICMP=19, NET_IPV6_BINDV6ONLY=20, NET_IPV6_IP6FRAG_HIGH_THRESH=21, NET_IPV6_IP6FRAG_LOW_THRESH=22, NET_IPV6_IP6FRAG_TIME=23, NET_IPV6_IP6FRAG_SECRET_INTERVAL=24, NET_IPV6_MLD_MAX_MSF=25, }; enum { NET_IPV6_ROUTE_FLUSH=1, NET_IPV6_ROUTE_GC_THRESH=2, NET_IPV6_ROUTE_MAX_SIZE=3, NET_IPV6_ROUTE_GC_MIN_INTERVAL=4, NET_IPV6_ROUTE_GC_TIMEOUT=5, NET_IPV6_ROUTE_GC_INTERVAL=6, NET_IPV6_ROUTE_GC_ELASTICITY=7, NET_IPV6_ROUTE_MTU_EXPIRES=8, NET_IPV6_ROUTE_MIN_ADVMSS=9, NET_IPV6_ROUTE_GC_MIN_INTERVAL_MS=10 }; enum { NET_IPV6_FORWARDING=1, NET_IPV6_HOP_LIMIT=2, NET_IPV6_MTU=3, NET_IPV6_ACCEPT_RA=4, NET_IPV6_ACCEPT_REDIRECTS=5, NET_IPV6_AUTOCONF=6, NET_IPV6_DAD_TRANSMITS=7, NET_IPV6_RTR_SOLICITS=8, NET_IPV6_RTR_SOLICIT_INTERVAL=9, NET_IPV6_RTR_SOLICIT_DELAY=10, NET_IPV6_USE_TEMPADDR=11, NET_IPV6_TEMP_VALID_LFT=12, NET_IPV6_TEMP_PREFERED_LFT=13, NET_IPV6_REGEN_MAX_RETRY=14, NET_IPV6_MAX_DESYNC_FACTOR=15, NET_IPV6_MAX_ADDRESSES=16, NET_IPV6_FORCE_MLD_VERSION=17, NET_IPV6_ACCEPT_RA_DEFRTR=18, NET_IPV6_ACCEPT_RA_PINFO=19, NET_IPV6_ACCEPT_RA_RTR_PREF=20, NET_IPV6_RTR_PROBE_INTERVAL=21, NET_IPV6_ACCEPT_RA_RT_INFO_MAX_PLEN=22, NET_IPV6_PROXY_NDP=23, NET_IPV6_ACCEPT_SOURCE_ROUTE=25, __NET_IPV6_MAX }; enum { NET_IPV6_ICMP_RATELIMIT=1 }; enum { NET_NEIGH_MCAST_SOLICIT=1, NET_NEIGH_UCAST_SOLICIT=2, NET_NEIGH_APP_SOLICIT=3, NET_NEIGH_RETRANS_TIME=4, NET_NEIGH_REACHABLE_TIME=5, NET_NEIGH_DELAY_PROBE_TIME=6, NET_NEIGH_GC_STALE_TIME=7, NET_NEIGH_UNRES_QLEN=8, NET_NEIGH_PROXY_QLEN=9, NET_NEIGH_ANYCAST_DELAY=10, NET_NEIGH_PROXY_DELAY=11, NET_NEIGH_LOCKTIME=12, NET_NEIGH_GC_INTERVAL=13, NET_NEIGH_GC_THRESH1=14, NET_NEIGH_GC_THRESH2=15, NET_NEIGH_GC_THRESH3=16, NET_NEIGH_RETRANS_TIME_MS=17, NET_NEIGH_REACHABLE_TIME_MS=18, }; enum { NET_DCCP_DEFAULT=1, }; enum { NET_IPX_PPROP_BROADCASTING=1, NET_IPX_FORWARDING=2 }; enum { NET_LLC2=1, NET_LLC_STATION=2, }; enum { NET_LLC2_TIMEOUT=1, }; enum { NET_LLC_STATION_ACK_TIMEOUT=1, }; enum { NET_LLC2_ACK_TIMEOUT=1, NET_LLC2_P_TIMEOUT=2, NET_LLC2_REJ_TIMEOUT=3, NET_LLC2_BUSY_TIMEOUT=4, }; enum { NET_ATALK_AARP_EXPIRY_TIME=1, NET_ATALK_AARP_TICK_TIME=2, NET_ATALK_AARP_RETRANSMIT_LIMIT=3, NET_ATALK_AARP_RESOLVE_TIME=4 }; enum { NET_NETROM_DEFAULT_PATH_QUALITY=1, NET_NETROM_OBSOLESCENCE_COUNT_INITIALISER=2, NET_NETROM_NETWORK_TTL_INITIALISER=3, NET_NETROM_TRANSPORT_TIMEOUT=4, NET_NETROM_TRANSPORT_MAXIMUM_TRIES=5, NET_NETROM_TRANSPORT_ACKNOWLEDGE_DELAY=6, NET_NETROM_TRANSPORT_BUSY_DELAY=7, NET_NETROM_TRANSPORT_REQUESTED_WINDOW_SIZE=8, NET_NETROM_TRANSPORT_NO_ACTIVITY_TIMEOUT=9, NET_NETROM_ROUTING_CONTROL=10, NET_NETROM_LINK_FAILS_COUNT=11, NET_NETROM_RESET=12 }; enum { NET_AX25_IP_DEFAULT_MODE=1, NET_AX25_DEFAULT_MODE=2, NET_AX25_BACKOFF_TYPE=3, NET_AX25_CONNECT_MODE=4, NET_AX25_STANDARD_WINDOW=5, NET_AX25_EXTENDED_WINDOW=6, NET_AX25_T1_TIMEOUT=7, NET_AX25_T2_TIMEOUT=8, NET_AX25_T3_TIMEOUT=9, NET_AX25_IDLE_TIMEOUT=10, NET_AX25_N2=11, NET_AX25_PACLEN=12, NET_AX25_PROTOCOL=13, NET_AX25_DAMA_SLAVE_TIMEOUT=14 }; enum { NET_ROSE_RESTART_REQUEST_TIMEOUT=1, NET_ROSE_CALL_REQUEST_TIMEOUT=2, NET_ROSE_RESET_REQUEST_TIMEOUT=3, NET_ROSE_CLEAR_REQUEST_TIMEOUT=4, NET_ROSE_ACK_HOLD_BACK_TIMEOUT=5, NET_ROSE_ROUTING_CONTROL=6, NET_ROSE_LINK_FAIL_TIMEOUT=7, NET_ROSE_MAX_VCS=8, NET_ROSE_WINDOW_SIZE=9, NET_ROSE_NO_ACTIVITY_TIMEOUT=10 }; enum { NET_X25_RESTART_REQUEST_TIMEOUT=1, NET_X25_CALL_REQUEST_TIMEOUT=2, NET_X25_RESET_REQUEST_TIMEOUT=3, NET_X25_CLEAR_REQUEST_TIMEOUT=4, NET_X25_ACK_HOLD_BACK_TIMEOUT=5, NET_X25_FORWARD=6 }; enum { NET_TR_RIF_TIMEOUT=1 }; enum { NET_DECNET_NODE_TYPE = 1, NET_DECNET_NODE_ADDRESS = 2, NET_DECNET_NODE_NAME = 3, NET_DECNET_DEFAULT_DEVICE = 4, NET_DECNET_TIME_WAIT = 5, NET_DECNET_DN_COUNT = 6, NET_DECNET_DI_COUNT = 7, NET_DECNET_DR_COUNT = 8, NET_DECNET_DST_GC_INTERVAL = 9, NET_DECNET_CONF = 10, NET_DECNET_NO_FC_MAX_CWND = 11, NET_DECNET_MEM = 12, NET_DECNET_RMEM = 13, NET_DECNET_WMEM = 14, NET_DECNET_DEBUG_LEVEL = 255 }; enum { NET_DECNET_CONF_LOOPBACK = -2, NET_DECNET_CONF_DDCMP = -3, NET_DECNET_CONF_PPP = -4, NET_DECNET_CONF_X25 = -5, NET_DECNET_CONF_GRE = -6, NET_DECNET_CONF_ETHER = -7 }; enum { NET_DECNET_CONF_DEV_PRIORITY = 1, NET_DECNET_CONF_DEV_T1 = 2, NET_DECNET_CONF_DEV_T2 = 3, NET_DECNET_CONF_DEV_T3 = 4, NET_DECNET_CONF_DEV_FORWARDING = 5, NET_DECNET_CONF_DEV_BLKSIZE = 6, NET_DECNET_CONF_DEV_STATE = 7 }; enum { NET_SCTP_RTO_INITIAL = 1, NET_SCTP_RTO_MIN = 2, NET_SCTP_RTO_MAX = 3, NET_SCTP_RTO_ALPHA = 4, NET_SCTP_RTO_BETA = 5, NET_SCTP_VALID_COOKIE_LIFE = 6, NET_SCTP_ASSOCIATION_MAX_RETRANS = 7, NET_SCTP_PATH_MAX_RETRANS = 8, NET_SCTP_MAX_INIT_RETRANSMITS = 9, NET_SCTP_HB_INTERVAL = 10, NET_SCTP_PRESERVE_ENABLE = 11, NET_SCTP_MAX_BURST = 12, NET_SCTP_ADDIP_ENABLE = 13, NET_SCTP_PRSCTP_ENABLE = 14, NET_SCTP_SNDBUF_POLICY = 15, NET_SCTP_SACK_TIMEOUT = 16, NET_SCTP_RCVBUF_POLICY = 17, }; enum { NET_BRIDGE_NF_CALL_ARPTABLES = 1, NET_BRIDGE_NF_CALL_IPTABLES = 2, NET_BRIDGE_NF_CALL_IP6TABLES = 3, NET_BRIDGE_NF_FILTER_VLAN_TAGGED = 4, NET_BRIDGE_NF_FILTER_PPPOE_TAGGED = 5, }; enum { NET_IRDA_DISCOVERY=1, NET_IRDA_DEVNAME=2, NET_IRDA_DEBUG=3, NET_IRDA_FAST_POLL=4, NET_IRDA_DISCOVERY_SLOTS=5, NET_IRDA_DISCOVERY_TIMEOUT=6, NET_IRDA_SLOT_TIMEOUT=7, NET_IRDA_MAX_BAUD_RATE=8, NET_IRDA_MIN_TX_TURN_TIME=9, NET_IRDA_MAX_TX_DATA_SIZE=10, NET_IRDA_MAX_TX_WINDOW=11, NET_IRDA_MAX_NOREPLY_TIME=12, NET_IRDA_WARN_NOREPLY_TIME=13, NET_IRDA_LAP_KEEPALIVE_TIME=14, }; enum { FS_NRINODE=1, FS_STATINODE=2, FS_MAXINODE=3, FS_NRDQUOT=4, FS_MAXDQUOT=5, FS_NRFILE=6, FS_MAXFILE=7, FS_DENTRY=8, FS_NRSUPER=9, FS_MAXSUPER=10, FS_OVERFLOWUID=11, FS_OVERFLOWGID=12, FS_LEASES=13, FS_DIR_NOTIFY=14, FS_LEASE_TIME=15, FS_DQSTATS=16, FS_XFS=17, FS_AIO_NR=18, FS_AIO_MAX_NR=19, FS_INOTIFY=20, FS_OCFS2=988, }; enum { FS_DQ_LOOKUPS = 1, FS_DQ_DROPS = 2, FS_DQ_READS = 3, FS_DQ_WRITES = 4, FS_DQ_CACHE_HITS = 5, FS_DQ_ALLOCATED = 6, FS_DQ_FREE = 7, FS_DQ_SYNCS = 8, FS_DQ_WARNINGS = 9, }; enum { DEV_CDROM=1, DEV_HWMON=2, DEV_PARPORT=3, DEV_RAID=4, DEV_MAC_HID=5, DEV_SCSI=6, DEV_IPMI=7, }; enum { DEV_CDROM_INFO=1, DEV_CDROM_AUTOCLOSE=2, DEV_CDROM_AUTOEJECT=3, DEV_CDROM_DEBUG=4, DEV_CDROM_LOCK=5, DEV_CDROM_CHECK_MEDIA=6 }; enum { DEV_PARPORT_DEFAULT=-3 }; enum { DEV_RAID_SPEED_LIMIT_MIN=1, DEV_RAID_SPEED_LIMIT_MAX=2 }; enum { DEV_PARPORT_DEFAULT_TIMESLICE=1, DEV_PARPORT_DEFAULT_SPINTIME=2 }; enum { DEV_PARPORT_SPINTIME=1, DEV_PARPORT_BASE_ADDR=2, DEV_PARPORT_IRQ=3, DEV_PARPORT_DMA=4, DEV_PARPORT_MODES=5, DEV_PARPORT_DEVICES=6, DEV_PARPORT_AUTOPROBE=16 }; enum { DEV_PARPORT_DEVICES_ACTIVE=-3, }; enum { DEV_PARPORT_DEVICE_TIMESLICE=1, }; enum { DEV_MAC_HID_KEYBOARD_SENDS_LINUX_KEYCODES=1, DEV_MAC_HID_KEYBOARD_LOCK_KEYCODES=2, DEV_MAC_HID_MOUSE_BUTTON_EMULATION=3, DEV_MAC_HID_MOUSE_BUTTON2_KEYCODE=4, DEV_MAC_HID_MOUSE_BUTTON3_KEYCODE=5, DEV_MAC_HID_ADB_MOUSE_SENDS_KEYCODES=6 }; enum { DEV_SCSI_LOGGING_LEVEL=1, }; enum { DEV_IPMI_POWEROFF_POWERCYCLE=1, }; enum { ABI_DEFHANDLER_COFF=1, ABI_DEFHANDLER_ELF=2, ABI_DEFHANDLER_LCALL7=3, ABI_DEFHANDLER_LIBCSO=4, ABI_TRACE=5, ABI_FAKE_UTSNAME=6, }; # 45 "/usr/include/x86_64-linux-gnu/sys/sysctl.h" 2 3 4 #undef _LINUX_KERNEL_H #undef __undef_LINUX_KERNEL_H #undef _LINUX_TYPES_H #undef __undef_LINUX_TYPES_H #undef _LINUX_LIST_H #undef __undef_LINUX_LIST_H #undef __LINUX_COMPILER_H #undef __user #undef __undef__LINUX_COMPILER_H extern int sysctl (int *__name, int __nlen, void *__oldval, size_t *__oldlenp, void *__newval, size_t __newlen) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-W4It8W/config.packages.pthread/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:751) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:751) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.valgrind(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:692) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:692) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Compiler specific search VALGRIND: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.headers -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30103300 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/valgrind/valgrind.h" 1 3 4 # 74 "/usr/include/valgrind/valgrind.h" 3 4 #define __VALGRIND_H # 91 "/usr/include/valgrind/valgrind.h" 3 4 #define __VALGRIND_MAJOR__ 3 #define __VALGRIND_MINOR__ 6 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 1 3 4 # 31 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 #define _STDARG_H #define _ANSI_STDARG_H_ #undef __need___va_list #define __GNUC_VA_LIST typedef __builtin_va_list __gnuc_va_list; #define va_start(v,l) __builtin_va_start(v,l) #define va_end(v) __builtin_va_end(v) #define va_arg(v,l) __builtin_va_arg(v,l) #define va_copy(d,s) __builtin_va_copy(d,s) #define __va_copy(d,s) __builtin_va_copy(d,s) # 102 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 typedef __gnuc_va_list va_list; #define _VA_LIST_ #define _VA_LIST #define _VA_LIST_DEFINED #define _VA_LIST_T_H #define __va_list__ # 96 "/usr/include/valgrind/valgrind.h" 2 3 4 # 111 "/usr/include/valgrind/valgrind.h" 3 4 #undef PLAT_x86_darwin #undef PLAT_amd64_darwin #undef PLAT_x86_win32 #undef PLAT_x86_linux #undef PLAT_amd64_linux #undef PLAT_ppc32_linux #undef PLAT_ppc64_linux #undef PLAT_arm_linux #undef PLAT_s390x_linux # 132 "/usr/include/valgrind/valgrind.h" 3 4 #define PLAT_amd64_linux 1 # 168 "/usr/include/valgrind/valgrind.h" 3 4 #define VALGRIND_DO_CLIENT_REQUEST(_zzq_rlval,_zzq_default,_zzq_request,_zzq_arg1,_zzq_arg2,_zzq_arg3,_zzq_arg4,_zzq_arg5) do { (_zzq_rlval) = VALGRIND_DO_CLIENT_REQUEST_EXPR((_zzq_default), (_zzq_request), (_zzq_arg1), (_zzq_arg2), (_zzq_arg3), (_zzq_arg4), (_zzq_arg5)); } while (0) #define VALGRIND_DO_CLIENT_REQUEST_STMT(_zzq_request,_zzq_arg1,_zzq_arg2,_zzq_arg3,_zzq_arg4,_zzq_arg5) do { (void) VALGRIND_DO_CLIENT_REQUEST_EXPR(0, (_zzq_request), (_zzq_arg1), (_zzq_arg2), (_zzq_arg3), (_zzq_arg4), (_zzq_arg5)); } while (0) # 354 "/usr/include/valgrind/valgrind.h" 3 4 typedef struct { unsigned long long int nraddr; } OrigFn; #define __SPECIAL_INSTRUCTION_PREAMBLE "rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" #define VALGRIND_DO_CLIENT_REQUEST_EXPR(_zzq_default,_zzq_request,_zzq_arg1,_zzq_arg2,_zzq_arg3,_zzq_arg4,_zzq_arg5) __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(_zzq_request); _zzq_args[1] = (unsigned long long int)(_zzq_arg1); _zzq_args[2] = (unsigned long long int)(_zzq_arg2); _zzq_args[3] = (unsigned long long int)(_zzq_arg3); _zzq_args[4] = (unsigned long long int)(_zzq_arg4); _zzq_args[5] = (unsigned long long int)(_zzq_arg5); __asm__ volatile(__SPECIAL_INSTRUCTION_PREAMBLE "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (_zzq_default) : "cc", "memory" ); _zzq_result; }) # 386 "/usr/include/valgrind/valgrind.h" 3 4 #define VALGRIND_GET_NR_CONTEXT(_zzq_rlval) { volatile OrigFn* _zzq_orig = &(_zzq_rlval); volatile unsigned long long int __addr; __asm__ volatile(__SPECIAL_INSTRUCTION_PREAMBLE "xchgq %%rcx,%%rcx" : "=a" (__addr) : : "cc", "memory" ); _zzq_orig->nraddr = __addr; } # 399 "/usr/include/valgrind/valgrind.h" 3 4 #define VALGRIND_CALL_NOREDIR_RAX __SPECIAL_INSTRUCTION_PREAMBLE "xchgq %%rdx,%%rdx\n\t" # 704 "/usr/include/valgrind/valgrind.h" 3 4 #define VG_CONCAT4(_aa,_bb,_cc,_dd) _aa ##_bb ##_cc ##_dd #define I_WRAP_SONAME_FNNAME_ZU(soname,fnname) VG_CONCAT4(_vgw00000ZU_,soname,_,fnname) #define I_WRAP_SONAME_FNNAME_ZZ(soname,fnname) VG_CONCAT4(_vgw00000ZZ_,soname,_,fnname) #define VALGRIND_GET_ORIG_FN(_lval) VALGRIND_GET_NR_CONTEXT(_lval) #define CALL_FN_v_v(fnptr) do { volatile unsigned long _junk; CALL_FN_W_v(_junk,fnptr); } while (0) #define CALL_FN_v_W(fnptr,arg1) do { volatile unsigned long _junk; CALL_FN_W_W(_junk,fnptr,arg1); } while (0) #define CALL_FN_v_WW(fnptr,arg1,arg2) do { volatile unsigned long _junk; CALL_FN_W_WW(_junk,fnptr,arg1,arg2); } while (0) #define CALL_FN_v_WWW(fnptr,arg1,arg2,arg3) do { volatile unsigned long _junk; CALL_FN_W_WWW(_junk,fnptr,arg1,arg2,arg3); } while (0) #define CALL_FN_v_WWWW(fnptr,arg1,arg2,arg3,arg4) do { volatile unsigned long _junk; CALL_FN_W_WWWW(_junk,fnptr,arg1,arg2,arg3,arg4); } while (0) #define CALL_FN_v_5W(fnptr,arg1,arg2,arg3,arg4,arg5) do { volatile unsigned long _junk; CALL_FN_W_5W(_junk,fnptr,arg1,arg2,arg3,arg4,arg5); } while (0) #define CALL_FN_v_6W(fnptr,arg1,arg2,arg3,arg4,arg5,arg6) do { volatile unsigned long _junk; CALL_FN_W_6W(_junk,fnptr,arg1,arg2,arg3,arg4,arg5,arg6); } while (0) #define CALL_FN_v_7W(fnptr,arg1,arg2,arg3,arg4,arg5,arg6,arg7) do { volatile unsigned long _junk; CALL_FN_W_7W(_junk,fnptr,arg1,arg2,arg3,arg4,arg5,arg6,arg7); } while (0) # 1166 "/usr/include/valgrind/valgrind.h" 3 4 #define __CALLER_SAVED_REGS "rcx", "rdx", "rsi", "rdi", "r8", "r9", "r10", "r11" # 1224 "/usr/include/valgrind/valgrind.h" 3 4 #define __FRAME_POINTER ,"r"(__builtin_dwarf_cfa()) #define VALGRIND_CFI_PROLOGUE "movq %%rbp, %%r15\n\t" "movq %2, %%rbp\n\t" ".cfi_remember_state\n\t" ".cfi_def_cfa rbp, 0\n\t" #define VALGRIND_CFI_EPILOGUE "movq %%r15, %%rbp\n\t" ".cfi_restore_state\n\t" # 1265 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_v(lval,orig) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[1]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1285 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_W(lval,orig,arg1) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[2]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1307 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_WW(lval,orig,arg1,arg2) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[3]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1331 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_WWW(lval,orig,arg1,arg2,arg3) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[4]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1357 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_WWWW(lval,orig,arg1,arg2,arg3,arg4) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[5]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1385 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_5W(lval,orig,arg1,arg2,arg3,arg4,arg5) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[6]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); _argvec[5] = (unsigned long)(arg5); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "movq 40(%%rax), %%r8\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1415 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_6W(lval,orig,arg1,arg2,arg3,arg4,arg5,arg6) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[7]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); _argvec[5] = (unsigned long)(arg5); _argvec[6] = (unsigned long)(arg6); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "movq 48(%%rax), %%r9\n\t" "movq 40(%%rax), %%r8\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1447 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_7W(lval,orig,arg1,arg2,arg3,arg4,arg5,arg6,arg7) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[8]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); _argvec[5] = (unsigned long)(arg5); _argvec[6] = (unsigned long)(arg6); _argvec[7] = (unsigned long)(arg7); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $136,%%rsp\n\t" "pushq 56(%%rax)\n\t" "movq 48(%%rax), %%r9\n\t" "movq 40(%%rax), %%r8\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $8, %%rsp\n" "addq $136,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1483 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_8W(lval,orig,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[9]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); _argvec[5] = (unsigned long)(arg5); _argvec[6] = (unsigned long)(arg6); _argvec[7] = (unsigned long)(arg7); _argvec[8] = (unsigned long)(arg8); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "pushq 64(%%rax)\n\t" "pushq 56(%%rax)\n\t" "movq 48(%%rax), %%r9\n\t" "movq 40(%%rax), %%r8\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $16, %%rsp\n" "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1521 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_9W(lval,orig,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[10]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); _argvec[5] = (unsigned long)(arg5); _argvec[6] = (unsigned long)(arg6); _argvec[7] = (unsigned long)(arg7); _argvec[8] = (unsigned long)(arg8); _argvec[9] = (unsigned long)(arg9); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $136,%%rsp\n\t" "pushq 72(%%rax)\n\t" "pushq 64(%%rax)\n\t" "pushq 56(%%rax)\n\t" "movq 48(%%rax), %%r9\n\t" "movq 40(%%rax), %%r8\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $24, %%rsp\n" "addq $136,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1561 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_10W(lval,orig,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9,arg10) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[11]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); _argvec[5] = (unsigned long)(arg5); _argvec[6] = (unsigned long)(arg6); _argvec[7] = (unsigned long)(arg7); _argvec[8] = (unsigned long)(arg8); _argvec[9] = (unsigned long)(arg9); _argvec[10] = (unsigned long)(arg10); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "pushq 80(%%rax)\n\t" "pushq 72(%%rax)\n\t" "pushq 64(%%rax)\n\t" "pushq 56(%%rax)\n\t" "movq 48(%%rax), %%r9\n\t" "movq 40(%%rax), %%r8\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $32, %%rsp\n" "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1603 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_11W(lval,orig,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9,arg10,arg11) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[12]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); _argvec[5] = (unsigned long)(arg5); _argvec[6] = (unsigned long)(arg6); _argvec[7] = (unsigned long)(arg7); _argvec[8] = (unsigned long)(arg8); _argvec[9] = (unsigned long)(arg9); _argvec[10] = (unsigned long)(arg10); _argvec[11] = (unsigned long)(arg11); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $136,%%rsp\n\t" "pushq 88(%%rax)\n\t" "pushq 80(%%rax)\n\t" "pushq 72(%%rax)\n\t" "pushq 64(%%rax)\n\t" "pushq 56(%%rax)\n\t" "movq 48(%%rax), %%r9\n\t" "movq 40(%%rax), %%r8\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $40, %%rsp\n" "addq $136,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 1647 "/usr/include/valgrind/valgrind.h" 3 4 #define CALL_FN_W_12W(lval,orig,arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9,arg10,arg11,arg12) do { volatile OrigFn _orig = (orig); volatile unsigned long _argvec[13]; volatile unsigned long _res; _argvec[0] = (unsigned long)_orig.nraddr; _argvec[1] = (unsigned long)(arg1); _argvec[2] = (unsigned long)(arg2); _argvec[3] = (unsigned long)(arg3); _argvec[4] = (unsigned long)(arg4); _argvec[5] = (unsigned long)(arg5); _argvec[6] = (unsigned long)(arg6); _argvec[7] = (unsigned long)(arg7); _argvec[8] = (unsigned long)(arg8); _argvec[9] = (unsigned long)(arg9); _argvec[10] = (unsigned long)(arg10); _argvec[11] = (unsigned long)(arg11); _argvec[12] = (unsigned long)(arg12); __asm__ volatile( VALGRIND_CFI_PROLOGUE "subq $128,%%rsp\n\t" "pushq 96(%%rax)\n\t" "pushq 88(%%rax)\n\t" "pushq 80(%%rax)\n\t" "pushq 72(%%rax)\n\t" "pushq 64(%%rax)\n\t" "pushq 56(%%rax)\n\t" "movq 48(%%rax), %%r9\n\t" "movq 40(%%rax), %%r8\n\t" "movq 32(%%rax), %%rcx\n\t" "movq 24(%%rax), %%rdx\n\t" "movq 16(%%rax), %%rsi\n\t" "movq 8(%%rax), %%rdi\n\t" "movq (%%rax), %%rax\n\t" VALGRIND_CALL_NOREDIR_RAX "addq $48, %%rsp\n" "addq $128,%%rsp\n\t" VALGRIND_CFI_EPILOGUE : "=a" (_res) : "a" (&_argvec[0]) __FRAME_POINTER : "cc", "memory", __CALLER_SAVED_REGS, "r15" ); lval = (__typeof__(lval)) _res; } while (0) # 3596 "/usr/include/valgrind/valgrind.h" 3 4 #define VG_USERREQ_TOOL_BASE(a,b) ((unsigned int)(((a)&0xff) << 24 | ((b)&0xff) << 16)) #define VG_IS_TOOL_USERREQ(a,b,v) (VG_USERREQ_TOOL_BASE(a,b) == ((v) & 0xffff0000)) typedef enum { VG_USERREQ__RUNNING_ON_VALGRIND = 0x1001, VG_USERREQ__DISCARD_TRANSLATIONS = 0x1002, VG_USERREQ__CLIENT_CALL0 = 0x1101, VG_USERREQ__CLIENT_CALL1 = 0x1102, VG_USERREQ__CLIENT_CALL2 = 0x1103, VG_USERREQ__CLIENT_CALL3 = 0x1104, VG_USERREQ__COUNT_ERRORS = 0x1201, VG_USERREQ__GDB_MONITOR_COMMAND = 0x1202, VG_USERREQ__MALLOCLIKE_BLOCK = 0x1301, VG_USERREQ__RESIZEINPLACE_BLOCK = 0x130b, VG_USERREQ__FREELIKE_BLOCK = 0x1302, VG_USERREQ__CREATE_MEMPOOL = 0x1303, VG_USERREQ__DESTROY_MEMPOOL = 0x1304, VG_USERREQ__MEMPOOL_ALLOC = 0x1305, VG_USERREQ__MEMPOOL_FREE = 0x1306, VG_USERREQ__MEMPOOL_TRIM = 0x1307, VG_USERREQ__MOVE_MEMPOOL = 0x1308, VG_USERREQ__MEMPOOL_CHANGE = 0x1309, VG_USERREQ__MEMPOOL_EXISTS = 0x130a, # 3650 "/usr/include/valgrind/valgrind.h" 3 4 VG_USERREQ__PRINTF = 0x1401, VG_USERREQ__PRINTF_BACKTRACE = 0x1402, VG_USERREQ__PRINTF_VALIST_BY_REF = 0x1403, VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF = 0x1404, VG_USERREQ__STACK_REGISTER = 0x1501, VG_USERREQ__STACK_DEREGISTER = 0x1502, VG_USERREQ__STACK_CHANGE = 0x1503, VG_USERREQ__LOAD_PDB_DEBUGINFO = 0x1601, VG_USERREQ__MAP_IP_TO_SRCLOC = 0x1701, VG_USERREQ__CHANGE_ERR_DISABLEMENT = 0x1801 } Vg_ClientRequest; # 3684 "/usr/include/valgrind/valgrind.h" 3 4 #define RUNNING_ON_VALGRIND (unsigned)VALGRIND_DO_CLIENT_REQUEST_EXPR(0 , VG_USERREQ__RUNNING_ON_VALGRIND, 0, 0, 0, 0, 0) # 3694 "/usr/include/valgrind/valgrind.h" 3 4 #define VALGRIND_DISCARD_TRANSLATIONS(_qzz_addr,_qzz_len) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__DISCARD_TRANSLATIONS, _qzz_addr, _qzz_len, 0, 0, 0) # 3707 "/usr/include/valgrind/valgrind.h" 3 4 static int VALGRIND_PRINTF(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs,format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }) ; __builtin_va_end(vargs); return (int)_qzz_res; } static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs,format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }) ; __builtin_va_end(vargs); return (int)_qzz_res; } # 3806 "/usr/include/valgrind/valgrind.h" 3 4 #define VALGRIND_NON_SIMD_CALL0(_qyy_fn) VALGRIND_DO_CLIENT_REQUEST_EXPR(0 , VG_USERREQ__CLIENT_CALL0, _qyy_fn, 0, 0, 0, 0) #define VALGRIND_NON_SIMD_CALL1(_qyy_fn,_qyy_arg1) VALGRIND_DO_CLIENT_REQUEST_EXPR(0 , VG_USERREQ__CLIENT_CALL1, _qyy_fn, _qyy_arg1, 0, 0, 0) #define VALGRIND_NON_SIMD_CALL2(_qyy_fn,_qyy_arg1,_qyy_arg2) VALGRIND_DO_CLIENT_REQUEST_EXPR(0 , VG_USERREQ__CLIENT_CALL2, _qyy_fn, _qyy_arg1, _qyy_arg2, 0, 0) #define VALGRIND_NON_SIMD_CALL3(_qyy_fn,_qyy_arg1,_qyy_arg2,_qyy_arg3) VALGRIND_DO_CLIENT_REQUEST_EXPR(0 , VG_USERREQ__CLIENT_CALL3, _qyy_fn, _qyy_arg1, _qyy_arg2, _qyy_arg3, 0) # 3835 "/usr/include/valgrind/valgrind.h" 3 4 #define VALGRIND_COUNT_ERRORS (unsigned)VALGRIND_DO_CLIENT_REQUEST_EXPR( 0 , VG_USERREQ__COUNT_ERRORS, 0, 0, 0, 0, 0) # 3942 "/usr/include/valgrind/valgrind.h" 3 4 #define VALGRIND_MALLOCLIKE_BLOCK(addr,sizeB,rzB,is_zeroed) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__MALLOCLIKE_BLOCK, addr, sizeB, rzB, is_zeroed, 0) #define VALGRIND_RESIZEINPLACE_BLOCK(addr,oldSizeB,newSizeB,rzB) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__RESIZEINPLACE_BLOCK, addr, oldSizeB, newSizeB, rzB, 0) #define VALGRIND_FREELIKE_BLOCK(addr,rzB) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__FREELIKE_BLOCK, addr, rzB, 0, 0, 0) #define VALGRIND_CREATE_MEMPOOL(pool,rzB,is_zeroed) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__CREATE_MEMPOOL, pool, rzB, is_zeroed, 0, 0) #define VALGRIND_DESTROY_MEMPOOL(pool) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__DESTROY_MEMPOOL, pool, 0, 0, 0, 0) #define VALGRIND_MEMPOOL_ALLOC(pool,addr,size) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__MEMPOOL_ALLOC, pool, addr, size, 0, 0) #define VALGRIND_MEMPOOL_FREE(pool,addr) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__MEMPOOL_FREE, pool, addr, 0, 0, 0) #define VALGRIND_MEMPOOL_TRIM(pool,addr,size) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__MEMPOOL_TRIM, pool, addr, size, 0, 0) #define VALGRIND_MOVE_MEMPOOL(poolA,poolB) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__MOVE_MEMPOOL, poolA, poolB, 0, 0, 0) #define VALGRIND_MEMPOOL_CHANGE(pool,addrA,addrB,size) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__MEMPOOL_CHANGE, pool, addrA, addrB, size, 0) #define VALGRIND_MEMPOOL_EXISTS(pool) (unsigned)VALGRIND_DO_CLIENT_REQUEST_EXPR(0, VG_USERREQ__MEMPOOL_EXISTS, pool, 0, 0, 0, 0) #define VALGRIND_STACK_REGISTER(start,end) (unsigned)VALGRIND_DO_CLIENT_REQUEST_EXPR(0, VG_USERREQ__STACK_REGISTER, start, end, 0, 0, 0) #define VALGRIND_STACK_DEREGISTER(id) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__STACK_DEREGISTER, id, 0, 0, 0, 0) #define VALGRIND_STACK_CHANGE(id,start,end) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__STACK_CHANGE, id, start, end, 0, 0) #define VALGRIND_LOAD_PDB_DEBUGINFO(fd,ptr,total_size,delta) VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__LOAD_PDB_DEBUGINFO, fd, ptr, total_size, delta, 0) #define VALGRIND_MAP_IP_TO_SRCLOC(addr,buf64) (unsigned)VALGRIND_DO_CLIENT_REQUEST_EXPR(0, VG_USERREQ__MAP_IP_TO_SRCLOC, addr, buf64, 0, 0, 0) # 4040 "/usr/include/valgrind/valgrind.h" 3 4 #define VALGRIND_DISABLE_ERROR_REPORTING VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__CHANGE_ERR_DISABLEMENT, 1, 0, 0, 0, 0) #define VALGRIND_ENABLE_ERROR_REPORTING VALGRIND_DO_CLIENT_REQUEST_STMT(VG_USERREQ__CHANGE_ERR_DISABLEMENT, -1, 0, 0, 0, 0) #undef PLAT_x86_darwin #undef PLAT_amd64_darwin #undef PLAT_x86_win32 #undef PLAT_x86_linux #undef PLAT_amd64_linux #undef PLAT_ppc32_linux #undef PLAT_ppc64_linux #undef PLAT_arm_linux #undef PLAT_s390x_linux # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['valgrind/valgrind.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Popping language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.packages.valgrind Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.valgrind/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.valgrind/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.packages.valgrind/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.packages.valgrind/conftest.c:6:1: warning: value computed is not used [-Wunused-value] Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST locateC2html from config.packages.c2html(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/c2html.py:32) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:32) Looking for default C2html executable Checking for program /usr/lib/mutt/c2html...not found Checking for program /home/tisaac/.local/bin/c2html...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/c2html...not found Checking for program /home/tisaac/.bin/c2html...not found Checking for program /usr/lib/lightdm/lightdm/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/games/c2html...not found Checking for program /home/tisaac/.bin/c2html...not found Checking for program /home/tisaac/c2html...not found Checking for program /home/tisaac/Projects/petsc/bin/win32fe/c2html...not found Checking for program /usr/lib/mutt/lgrind...not found Checking for program /home/tisaac/.local/bin/lgrind...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/lgrind...not found Checking for program /home/tisaac/.bin/lgrind...not found Checking for program /usr/lib/lightdm/lightdm/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/games/lgrind...not found Checking for program /home/tisaac/.bin/lgrind...not found Checking for program /home/tisaac/lgrind...not found Checking for program /home/tisaac/Projects/petsc/bin/win32fe/lgrind...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing Checking for program /usr/lib/mutt/pdflatex...not found Checking for program /home/tisaac/.local/bin/pdflatex...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/pdflatex...found Defined make macro "PDFLATEX" to "/usr/local/texlive/2015/bin/x86_64-linux/pdflatex" Checking for program /usr/lib/mutt/bfort...not found Checking for program /home/tisaac/.local/bin/bfort...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/bfort...not found Checking for program /home/tisaac/.bin/bfort...not found Checking for program /usr/lib/lightdm/lightdm/bfort...not found Checking for program /usr/local/sbin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/games/bfort...not found Checking for program /home/tisaac/.bin/bfort...not found Checking for program /home/tisaac/bfort...not found Checking for program /home/tisaac/Projects/petsc/bin/win32fe/bfort...not found Checking for program /usr/lib/mutt/doctext...not found Checking for program /home/tisaac/.local/bin/doctext...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/doctext...not found Checking for program /home/tisaac/.bin/doctext...not found Checking for program /usr/lib/lightdm/lightdm/doctext...not found Checking for program /usr/local/sbin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/games/doctext...not found Checking for program /home/tisaac/.bin/doctext...not found Checking for program /home/tisaac/doctext...not found Checking for program /home/tisaac/Projects/petsc/bin/win32fe/doctext...not found Checking for program /usr/lib/mutt/mapnames...not found Checking for program /home/tisaac/.local/bin/mapnames...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/mapnames...not found Checking for program /home/tisaac/.bin/mapnames...not found Checking for program /usr/lib/lightdm/lightdm/mapnames...not found Checking for program /usr/local/sbin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/games/mapnames...not found Checking for program /home/tisaac/.bin/mapnames...not found Checking for program /home/tisaac/mapnames...not found Checking for program /home/tisaac/Projects/petsc/bin/win32fe/mapnames...not found Checking for program /usr/lib/mutt/bib2html...not found Checking for program /home/tisaac/.local/bin/bib2html...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/bib2html...not found Checking for program /home/tisaac/.bin/bib2html...not found Checking for program /usr/lib/lightdm/lightdm/bib2html...not found Checking for program /usr/local/sbin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/games/bib2html...not found Checking for program /home/tisaac/.bin/bib2html...not found Checking for program /home/tisaac/bib2html...not found Checking for program /home/tisaac/Projects/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs Pushing language C ================================================================================ TEST configureLibrary from config.packages.sowing(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:692) TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:692) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with sowing Could not locate an existing copy of SOWING: ['mpich-3.1.3'] Downloading sowing =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-sowing.git for SOWING =============================================================================== Executing: git clone https://bitbucket.org/petsc/pkg-sowing.git /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with sowing Found a copy of SOWING in git.sowing Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.1.23-p1^{commit}'] Executing: ['git', 'rev-parse', 'v1.1.23-p1'] stdout: 07d96424e016945c6914c5073c333a3bd7a66fdd Executing: ['git', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', '07d96424e016945c6914c5073c333a3bd7a66fdd'] Have to rebuild SOWING, /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/sowing.petscconf != /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/petsc/conf/pkg.conf.sowing =============================================================================== Running configure on SOWING; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing && ./configure --prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/local/texlive/2015/bin/x86_64-linux/latex checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/bfort/Makefile config.status: creating docs/doctext/Makefile config.status: creating docs/install/Makefile config.status: creating docs/tohtml/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing bib2html commands =============================================================================== Running make on SOWING; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing && /usr/bin/make clean stdout: for dir in src docs ; do ( cd $dir && /usr/bin/make clean ) ; done make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/make clean ) ; done make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/sys' rm -f *.o *~ make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/sys' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bfort' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/make clean ) make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml/testing' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/make clean ; fi ) make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' /bin/rm -f *.o *~ make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/mapnames' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bib2html' rm -f tout.htm tout-bib.htm make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bib2html' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src' make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/bfort' rm -f bfort.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/bfort' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/doctext' rm -f doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/doctext' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/install' rm -f install.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/install' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/tohtml' rm -f tohtml.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/tohtml' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing && /usr/bin/make stdout: (cd src/sys && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/sys' (cd src/tohtml && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml' (cd src/bfort && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bfort' gcc -DBASEDEF='"/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/bfort-base.txt"' -DBASEPATH='"/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/bfort-base.txt"' -DBASEPATH='"/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bfort' (cd src/textfilt && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' (cd src/doctext && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext' (cd src/textfilt && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' make[1]: Nothing to be done for `ALL'. make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' (cd src/mapnames && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/mapnames' =============================================================================== Running make install on SOWING; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing && /usr/bin/make install stdout: /usr/bin/install -c bin/bib2html /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bib2html /usr/bin/install -c src/doctext/doctext /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/doctext /usr/bin/install -c src/doctext/doc2lt /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/tohtml if [ "`cd bin && pwd`" != "`cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bfort /usr/bin/install -c src/mapnames/mapnames /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/bfort.1 ;\ fi ********Output of running make on SOWING follows ******* checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/local/texlive/2015/bin/x86_64-linux/latex checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/bfort/Makefile config.status: creating docs/doctext/Makefile config.status: creating docs/install/Makefile config.status: creating docs/tohtml/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing bib2html commandsfor dir in src docs ; do ( cd $dir && /usr/bin/make clean ) ; done make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/make clean ) ; done make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/sys' rm -f *.o *~ make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/sys' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bfort' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/make clean ) make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml/testing' make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/make clean ; fi ) make[3]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit make[3]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' /bin/rm -f *.o *~ make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/mapnames' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bib2html' rm -f tout.htm tout-bib.htm make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bib2html' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src' make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/bfort' rm -f bfort.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/bfort' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/doctext' rm -f doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/doctext' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/install' rm -f install.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/install' make[2]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/tohtml' rm -f tohtml.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs/tohtml' make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/sys' (cd src/tohtml && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/tohtml' (cd src/bfort && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bfort' gcc -DBASEDEF='"/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/bfort-base.txt"' -DBASEPATH='"/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/bfort-base.txt"' -DBASEPATH='"/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/bfort' (cd src/textfilt && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' (cd src/doctext && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/doctext' (cd src/textfilt && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' make[1]: Nothing to be done for `ALL'. make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/textfilt' (cd src/mapnames && /usr/bin/make ) make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing/src/mapnames'/usr/bin/install -c bin/bib2html /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bib2html /usr/bin/install -c src/doctext/doctext /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/doctext /usr/bin/install -c src/doctext/doc2lt /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/tohtml if [ "`cd bin && pwd`" != "`cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bfort /usr/bin/install -c src/mapnames/mapnames /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/share/man/man1/bfort.1 ;\ fi********End of Output of running make on SOWING ******* Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download SOWING: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] ================================================================================ TEST checkSharedLibrary from config.packages.sowing(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:751) TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:751) By default we don't care about checking if the library is shared Popping language C Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bfort...found Defined make macro "BFORT" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bfort" Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/doctext...found Defined make macro "DOCTEXT" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/doctext" Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mapnames...found Defined make macro "MAPNAMES" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mapnames" Checking for program /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bib2html...found Defined make macro "BIB2HTML" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bib2html" Running /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bfort to generate fortran stubs ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.saws(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:692) TESTING: configureLibrary from config.packages.saws(config/BuildSystem/config/package.py:692) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional saws Looking for SAWS at git.saws, hg.saws or a directory starting with saws Could not locate an existing copy of SAWS: ['git.sowing', 'mpich-3.1.3'] Downloading saws =============================================================================== Trying to download git://https://bitbucket.org/saws/saws.git for SAWS =============================================================================== Executing: git clone https://bitbucket.org/saws/saws.git /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws Looking for SAWS at git.saws, hg.saws or a directory starting with saws Found a copy of SAWS in git.saws Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '312ccc1698cf6c489c0d1eff6db46f54bd9031b7^{commit}'] Executing: ['git', 'rev-parse', '312ccc1698cf6c489c0d1eff6db46f54bd9031b7'] stdout: 312ccc1698cf6c489c0d1eff6db46f54bd9031b7 Executing: ['git', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', '312ccc1698cf6c489c0d1eff6db46f54bd9031b7'] Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.packages.saws Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -v stdout: mpifort for MPICH version 3.1.3 Popping language FC Have to rebuild SAWS, /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/saws.petscconf != /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/petsc/conf/pkg.conf.saws =============================================================================== Running configure on SAWS; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws && ./configure --prefix=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich MAKE=/usr/bin/make --libdir=/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib CC="/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc" CFLAGS="-g3" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx" CXXFLAGS="-g" F90="/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90" F90FLAGS="-ffree-line-length-0 -g" F77="/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90" FFLAGS="-ffree-line-length-0 -g" FC="/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90" FCFLAGS="-ffree-line-length-0 -g" --enable-shared stdout: Configuration complete in: build To build: make -j3 -C build =============================================================================== Running make on SAWS; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws && /usr/bin/make clean stdout: /usr/bin/make -C /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build clean make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' rm -rf /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws && /usr/bin/make -j 4 stdout: /usr/bin/make -C /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build all make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/SAWsInitHandler.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/examples/SAWsInitHandler.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/SAWsInitHandlerUpdatingData.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/examples/SAWsInitHandlerUpdatingData.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/mongoose.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/mongoose.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/cJSON.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/cJSON.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/SAWs.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/SAWs.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC cp /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/SAWs.h /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/include/SAWs.h cp /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/mongoose.h /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/include/mongoose.h /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/Trivial.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/examples/Trivial.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleJSONtoCStructTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/tests/simpleJSONtoCStructTest.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleMultiDirectoryJSONTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/tests/simpleMultiDirectoryJSONTest.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleRegisterDeleteTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/tests/simpleRegisterDeleteTest.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -shared -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/mongoose.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/cJSON.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/SAWs.o -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/Trivial -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/Trivial.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/SAWsInitHandler -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/SAWsInitHandler.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/simpleJSONtoCStructTest /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleJSONtoCStructTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/SAWsInitHandlerUpdatingData -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/SAWsInitHandlerUpdatingData.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/simpleMultiDirectoryJSONTest /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleMultiDirectoryJSONTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/simpleRegisterDeleteTest /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleRegisterDeleteTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' =============================================================================== Running make install on SAWS; this may take several minutes =============================================================================== Executing: cd /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws && /usr/bin/make install stdout: /usr/bin/make -C /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build install make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' install -d -m0755 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib" install -m0644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/lib* "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib" install -d -m0755 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include" install -m0644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/include/*.h "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include" make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' ********Output of running make on SAWS follows ******* Configuration complete in: build To build: make -j3 -C build/usr/bin/make -C /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build clean make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' rm -rf /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build'/usr/bin/make -C /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build all make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/SAWsInitHandler.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/examples/SAWsInitHandler.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/SAWsInitHandlerUpdatingData.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/examples/SAWsInitHandlerUpdatingData.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/mongoose.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/mongoose.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/cJSON.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/cJSON.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/SAWs.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/SAWs.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC cp /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/SAWs.h /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/include/SAWs.h cp /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src/mongoose.h /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/include/mongoose.h /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/Trivial.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/examples/Trivial.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleJSONtoCStructTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/tests/simpleJSONtoCStructTest.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleMultiDirectoryJSONTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/tests/simpleMultiDirectoryJSONTest.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleRegisterDeleteTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/tests/simpleRegisterDeleteTest.c -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -fPIC /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -shared -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/mongoose.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/cJSON.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/src/SAWs.o -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/Trivial -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/Trivial.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/SAWsInitHandler -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/SAWsInitHandler.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/simpleJSONtoCStructTest /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleJSONtoCStructTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/SAWsInitHandlerUpdatingData -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/examples/SAWsInitHandlerUpdatingData.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/simpleMultiDirectoryJSONTest /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleMultiDirectoryJSONTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/bin/simpleRegisterDeleteTest /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/tests/simpleRegisterDeleteTest.o /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/libSAWs.so -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/src -DNO_SSL -DNO_SSL_DLL -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/ -lpthread -lm make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build'/usr/bin/make -C /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build install make[1]: Entering directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build' install -d -m0755 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib" install -m0644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/lib/lib* "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib" install -d -m0755 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include" install -m0644 /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build/include/*.h "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include" make[1]: Leaving directory `/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws/build'********End of Output of running make on SAWS ******* Checking for library in Download SAWS: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libSAWs.a'] Contents: ['externalpackages', 'include', 'bin', 'share', 'lib'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SAWs_Register] in library ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib/libSAWs.a'] ['libm.a'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SAWs_Register(); static void _check_SAWs_Register() { SAWs_Register(); } int main() { _check_SAWs_Register();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBSAWS" to "1" Popping language C Checking for headers Download SAWS: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['SAWs.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.headers -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LIBSAWS 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30103300 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" 1 # 24 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" #define __SAWs_h__ # 35 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Get_Available_Port(int*); int SAWs_Set_Use_HTTPS(const char*); int SAWs_Set_Port(int); int SAWs_Set_Use_Logfile(const char*); int SAWs_Set_Document_Root(const char*); int SAWs_Add_Document_Root(const char*); # 78 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Push_Header(const char*,const char *); # 88 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Pop_Header(const char*); # 100 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Push_Local_Header(void); # 114 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Push_Body(const char*,int,const char *); # 124 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Pop_Body(const char*,int); int SAWs_Initialize(void); int SAWs_Finalize(void); # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 #define _STRING_H 1 # 1 "/usr/include/features.h" 1 3 4 # 21 "/usr/include/features.h" 3 4 #define _FEATURES_H 1 # 98 "/usr/include/features.h" 3 4 #undef __USE_ISOC99 #undef __USE_ISOC95 #undef __USE_POSIX #undef __USE_POSIX2 #undef __USE_POSIX199309 #undef __USE_POSIX199506 #undef __USE_XOPEN #undef __USE_XOPEN_EXTENDED #undef __USE_UNIX98 #undef __USE_XOPEN2K #undef __USE_XOPEN2KXSI #undef __USE_XOPEN2K8 #undef __USE_XOPEN2K8XSI #undef __USE_LARGEFILE #undef __USE_LARGEFILE64 #undef __USE_FILE_OFFSET64 #undef __USE_BSD #undef __USE_SVID #undef __USE_MISC #undef __USE_ATFILE #undef __USE_GNU #undef __USE_REENTRANT #undef __USE_FORTIFY_LEVEL #undef __FAVOR_BSD #undef __KERNEL_STRICT_NAMES #define __KERNEL_STRICT_NAMES #define __USE_ANSI 1 # 141 "/usr/include/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) # 184 "/usr/include/features.h" 3 4 #define _BSD_SOURCE 1 #define _SVID_SOURCE 1 # 207 "/usr/include/features.h" 3 4 #define _POSIX_SOURCE 1 #define _POSIX_C_SOURCE 200809L #define __USE_POSIX_IMPLICITLY 1 #define __USE_POSIX 1 #define __USE_POSIX2 1 #define __USE_POSIX199309 1 #define __USE_POSIX199506 1 #define __USE_XOPEN2K 1 #undef __USE_ISOC95 #define __USE_ISOC95 1 #undef __USE_ISOC99 #define __USE_ISOC99 1 #define __USE_XOPEN2K8 1 #undef _ATFILE_SOURCE #define _ATFILE_SOURCE 1 # 289 "/usr/include/features.h" 3 4 #define __USE_MISC 1 #define __USE_BSD 1 #define __USE_SVID 1 #define __USE_ATFILE 1 # 320 "/usr/include/features.h" 3 4 #define __USE_FORTIFY_LEVEL 0 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 3 4 #define _PREDEFS_H #define __STDC_IEC_559__ 1 #define __STDC_IEC_559_COMPLEX__ 1 # 325 "/usr/include/features.h" 2 3 4 #define __STDC_ISO_10646__ 200009L #undef __GNU_LIBRARY__ #define __GNU_LIBRARY__ 6 #define __GLIBC__ 2 #define __GLIBC_MINOR__ 15 #define __GLIBC_PREREQ(maj,min) ((__GLIBC__ << 16) + __GLIBC_MINOR__ >= ((maj) << 16) + (min)) #define __GLIBC_HAVE_LONG_LONG 1 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define _SYS_CDEFS_H 1 # 36 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #undef __P #undef __PMT #define __LEAF , __leaf__ #define __LEAF_ATTR __attribute__ ((__leaf__)) # 57 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __THROW __attribute__ ((__nothrow__ __LEAF)) #define __THROWNL __attribute__ ((__nothrow__)) #define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct # 88 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __P(args) args #define __PMT(args) args #define __CONCAT(x,y) x ## y #define __STRING(x) #x #define __ptr_t void * #define __long_double_t long double #define __BEGIN_DECLS #define __END_DECLS # 128 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __BEGIN_NAMESPACE_STD #define __END_NAMESPACE_STD #define __USING_NAMESPACE_STD(name) #define __BEGIN_NAMESPACE_C99 #define __END_NAMESPACE_C99 #define __USING_NAMESPACE_C99(name) #define __bounded #define __unbounded #define __ptrvalue #define __bos(ptr) __builtin_object_size (ptr, __USE_FORTIFY_LEVEL > 1) #define __bos0(ptr) __builtin_object_size (ptr, 0) #define __warndecl(name,msg) extern void name (void) __attribute__((__warning__ (msg))) #define __warnattr(msg) __attribute__((__warning__ (msg))) #define __errordecl(name,msg) extern void name (void) __attribute__((__error__ (msg))) # 164 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __flexarr [] # 191 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __REDIRECT(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) #define __REDIRECT_NTH(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROW #define __REDIRECT_NTHNL(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROWNL #define __ASMNAME(cname) __ASMNAME2 (__USER_LABEL_PREFIX__, cname) #define __ASMNAME2(prefix,cname) __STRING (prefix) cname # 225 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_malloc__ __attribute__ ((__malloc__)) # 234 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_pure__ __attribute__ ((__pure__)) #define __attribute_const__ __attribute__ ((__const__)) # 250 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_used__ __attribute__ ((__used__)) #define __attribute_noinline__ __attribute__ ((__noinline__)) #define __attribute_deprecated__ __attribute__ ((__deprecated__)) # 271 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_arg__(x) __attribute__ ((__format_arg__ (x))) # 281 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_strfmon__(a,b) __attribute__ ((__format__ (__strfmon__, a, b))) # 290 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __nonnull(params) __attribute__ ((__nonnull__ params)) #define __attribute_warn_unused_result__ __attribute__ ((__warn_unused_result__)) # 307 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __wur #define __always_inline __inline __attribute__ ((__always_inline__)) # 330 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __extern_inline extern __inline #define __extern_always_inline extern __always_inline __attribute__ ((__artificial__)) # 343 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __va_arg_pack() __builtin_va_arg_pack () #define __va_arg_pack_len() __builtin_va_arg_pack_len () # 364 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __restrict_arr __restrict # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 400 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __LDBL_REDIR1(name,proto,alias) name proto #define __LDBL_REDIR(name,proto) name proto #define __LDBL_REDIR1_NTH(name,proto,alias) name proto __THROW #define __LDBL_REDIR_NTH(name,proto) name proto __THROW #define __LDBL_REDIR_DECL(name) #define __REDIRECT_LDBL(name,proto,alias) __REDIRECT (name, proto, alias) #define __REDIRECT_NTH_LDBL(name,proto,alias) __REDIRECT_NTH (name, proto, alias) # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 3 4 #define __stub_bdflush #define __stub_chflags #define __stub_fattach #define __stub_fchflags #define __stub_fdetach #define __stub_getmsg #define __stub_gtty #define __stub_lchmod #define __stub_putmsg #define __stub_revoke #define __stub_setlogin #define __stub_sigreturn #define __stub_sstk #define __stub_stty # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 #define __need_size_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 187 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 22 "/usr/include/xlocale.h" 3 4 #define _XLOCALE_H 1 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 145 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" 2 int SAWs_Get_FullURL(size_t,char*); typedef enum {SAWs_MEMORY_UNDEF,SAWs_READ,SAWs_WRITE} SAWs_Memory_type; typedef enum {SAWs_DATA_UNDEF,SAWs_CHAR,SAWs_BOOLEAN,SAWs_INT,SAWs_FLOAT,SAWs_DOUBLE,SAWs_STRING} SAWs_Data_type; # 167 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Register(const char *,void*,int,SAWs_Memory_type,SAWs_Data_type); int SAWs_Set_Legal_Variable_Values(const char*,int,void*); int SAWs_Delete(const char*); # 201 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Lock(void); int SAWs_Unlock(void); # 219 "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include/SAWs.h" int SAWs_Selected(const char *,int*); #define SAWs_ERROR_NONE 0 #define SAWs_ERROR_DIRECTORY_NOT_FOUND 1 #define SAWs_ERROR_VARIABLE_NOT_FOUND 2 #define SAWs_ERROR_NOT_NUMERIC 3 #define SAWs_ERROR_NOT_BOOLEAN 4 #define SAWs_ERROR_DATATYPE_NOT_FOUND 5 #define SAWs_ERROR_CJSON_ERROR 6 #define SAWs_ERROR_VARIABLE_LIST_NULL 7 #define SAWs_ERROR_NULL_DIRECTORY 8 #define SAWs_ERROR_DIRECTORY_EXISTS 9 #define SAWs_ERROR_VARIABLE_EXISTS 10 #define SAWs_ERROR_MONGOOSE_ERROR 11 #define SAWs_ERROR_NULL_VARIABLE 12 #define SAWs_ERROR_NULL_NAME 13 #define SAWs_ERROR_MEMORY 14 #define SAWs_ERROR_RANGE 15 #define SAWs_ERROR_NO_SUPPORT 16 #define SAWs_ERROR_WRONG_STATE 17 #define SAWs_ERROR_LOG_FILE 18 #define SAWS_ERROR_SPACE 19 #define SAWs_ERROR_SYSTEM_CALL 20 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['SAWs.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.saws(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:751) TESTING: checkSharedLibrary from config.packages.saws(config/BuildSystem/config/package.py:751) By default we don't care about checking if the library is shared Popping language C Pushing language C ================================================================================ TEST configureLibrary from config.packages.ssl(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/ssl.py:26) TESTING: configureLibrary from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:26) ================================================================================== Checking for a functional ssl Checking for library in Compiler specific search SSL: [] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_SSLv23_method': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `SSLv23_method' collect2: ld returned 1 exit status Popping language C Checking for library in Compiler specific search SSL: ['libssl.a', 'libcrypto.a'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library ['libssl.a', 'libcrypto.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lssl -lcrypto -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBSSL" to "1" Defined "HAVE_LIBCRYPTO" to "1" Popping language C Checking for headers Compiler specific search SSL: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['openssl/ssl.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.headers -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBCRYPTO 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LIBSAWS 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_LIBSSL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30103300 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/openssl/ssl.h" 1 3 4 # 144 "/usr/include/openssl/ssl.h" 3 4 #define HEADER_SSL_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 9 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_NO_GMP #define OPENSSL_NO_IDEA #define OPENSSL_NO_JPAKE #define OPENSSL_NO_KRB5 #define OPENSSL_NO_MD2 #define OPENSSL_NO_MDC2 #define OPENSSL_NO_RC5 #define OPENSSL_NO_RFC3779 #define OPENSSL_NO_SCTP #define OPENSSL_NO_SSL2 #define OPENSSL_NO_STORE #define OPENSSL_THREADS #define OPENSSL_NO_STATIC_ENGINE # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 #define HEADER_E_OS2_H # 71 "/usr/include/openssl/e_os2.h" 3 4 #define OPENSSL_SYS_UNIX # 163 "/usr/include/openssl/e_os2.h" 3 4 #define OPENSSL_SYS_LINUX # 232 "/usr/include/openssl/e_os2.h" 3 4 #define OPENSSL_UNISTD_IO OPENSSL_UNISTD #define OPENSSL_DECLARE_EXIT # 264 "/usr/include/openssl/e_os2.h" 3 4 #define OPENSSL_EXPORT extern #define OPENSSL_IMPORT extern #define OPENSSL_GLOBAL #define OPENSSL_EXTERN OPENSSL_IMPORT # 287 "/usr/include/openssl/e_os2.h" 3 4 #define OPENSSL_IMPLEMENT_GLOBAL(type,name,value) OPENSSL_GLOBAL type _shadow_ ##name=value; #define OPENSSL_DECLARE_GLOBAL(type,name) OPENSSL_EXPORT type _shadow_ ##name #define OPENSSL_GLOBAL_REF(name) _shadow_ ##name # 309 "/usr/include/openssl/e_os2.h" 3 4 #define ossl_ssize_t ssize_t # 147 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/comp.h" 1 3 4 #define HEADER_COMP_H # 1 "/usr/include/openssl/crypto.h" 1 3 4 # 118 "/usr/include/openssl/crypto.h" 3 4 #define HEADER_CRYPTO_H # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 21 "/usr/include/features.h" 3 4 #define _FEATURES_H 1 # 98 "/usr/include/features.h" 3 4 #undef __USE_ISOC99 #undef __USE_ISOC95 #undef __USE_POSIX #undef __USE_POSIX2 #undef __USE_POSIX199309 #undef __USE_POSIX199506 #undef __USE_XOPEN #undef __USE_XOPEN_EXTENDED #undef __USE_UNIX98 #undef __USE_XOPEN2K #undef __USE_XOPEN2KXSI #undef __USE_XOPEN2K8 #undef __USE_XOPEN2K8XSI #undef __USE_LARGEFILE #undef __USE_LARGEFILE64 #undef __USE_FILE_OFFSET64 #undef __USE_BSD #undef __USE_SVID #undef __USE_MISC #undef __USE_ATFILE #undef __USE_GNU #undef __USE_REENTRANT #undef __USE_FORTIFY_LEVEL #undef __FAVOR_BSD #undef __KERNEL_STRICT_NAMES #define __KERNEL_STRICT_NAMES #define __USE_ANSI 1 # 141 "/usr/include/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) # 184 "/usr/include/features.h" 3 4 #define _BSD_SOURCE 1 #define _SVID_SOURCE 1 # 207 "/usr/include/features.h" 3 4 #define _POSIX_SOURCE 1 #define _POSIX_C_SOURCE 200809L #define __USE_POSIX_IMPLICITLY 1 #define __USE_POSIX 1 #define __USE_POSIX2 1 #define __USE_POSIX199309 1 #define __USE_POSIX199506 1 #define __USE_XOPEN2K 1 #undef __USE_ISOC95 #define __USE_ISOC95 1 #undef __USE_ISOC99 #define __USE_ISOC99 1 #define __USE_XOPEN2K8 1 #undef _ATFILE_SOURCE #define _ATFILE_SOURCE 1 # 289 "/usr/include/features.h" 3 4 #define __USE_MISC 1 #define __USE_BSD 1 #define __USE_SVID 1 #define __USE_ATFILE 1 # 320 "/usr/include/features.h" 3 4 #define __USE_FORTIFY_LEVEL 0 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 3 4 #define _PREDEFS_H #define __STDC_IEC_559__ 1 #define __STDC_IEC_559_COMPLEX__ 1 # 325 "/usr/include/features.h" 2 3 4 #define __STDC_ISO_10646__ 200009L #undef __GNU_LIBRARY__ #define __GNU_LIBRARY__ 6 #define __GLIBC__ 2 #define __GLIBC_MINOR__ 15 #define __GLIBC_PREREQ(maj,min) ((__GLIBC__ << 16) + __GLIBC_MINOR__ >= ((maj) << 16) + (min)) #define __GLIBC_HAVE_LONG_LONG 1 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define _SYS_CDEFS_H 1 # 36 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #undef __P #undef __PMT #define __LEAF , __leaf__ #define __LEAF_ATTR __attribute__ ((__leaf__)) # 57 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __THROW __attribute__ ((__nothrow__ __LEAF)) #define __THROWNL __attribute__ ((__nothrow__)) #define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct # 88 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __P(args) args #define __PMT(args) args #define __CONCAT(x,y) x ## y #define __STRING(x) #x #define __ptr_t void * #define __long_double_t long double #define __BEGIN_DECLS #define __END_DECLS # 128 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __BEGIN_NAMESPACE_STD #define __END_NAMESPACE_STD #define __USING_NAMESPACE_STD(name) #define __BEGIN_NAMESPACE_C99 #define __END_NAMESPACE_C99 #define __USING_NAMESPACE_C99(name) #define __bounded #define __unbounded #define __ptrvalue #define __bos(ptr) __builtin_object_size (ptr, __USE_FORTIFY_LEVEL > 1) #define __bos0(ptr) __builtin_object_size (ptr, 0) #define __warndecl(name,msg) extern void name (void) __attribute__((__warning__ (msg))) #define __warnattr(msg) __attribute__((__warning__ (msg))) #define __errordecl(name,msg) extern void name (void) __attribute__((__error__ (msg))) # 164 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __flexarr [] # 191 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __REDIRECT(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) #define __REDIRECT_NTH(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROW #define __REDIRECT_NTHNL(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROWNL #define __ASMNAME(cname) __ASMNAME2 (__USER_LABEL_PREFIX__, cname) #define __ASMNAME2(prefix,cname) __STRING (prefix) cname # 225 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_malloc__ __attribute__ ((__malloc__)) # 234 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_pure__ __attribute__ ((__pure__)) #define __attribute_const__ __attribute__ ((__const__)) # 250 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_used__ __attribute__ ((__used__)) #define __attribute_noinline__ __attribute__ ((__noinline__)) #define __attribute_deprecated__ __attribute__ ((__deprecated__)) # 271 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_arg__(x) __attribute__ ((__format_arg__ (x))) # 281 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_strfmon__(a,b) __attribute__ ((__format__ (__strfmon__, a, b))) # 290 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __nonnull(params) __attribute__ ((__nonnull__ params)) #define __attribute_warn_unused_result__ __attribute__ ((__warn_unused_result__)) # 307 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __wur #define __always_inline __inline __attribute__ ((__always_inline__)) # 330 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __extern_inline extern __inline #define __extern_always_inline extern __always_inline __attribute__ ((__artificial__)) # 343 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __va_arg_pack() __builtin_va_arg_pack () #define __va_arg_pack_len() __builtin_va_arg_pack_len () # 364 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __restrict_arr __restrict # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 400 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __LDBL_REDIR1(name,proto,alias) name proto #define __LDBL_REDIR(name,proto) name proto #define __LDBL_REDIR1_NTH(name,proto,alias) name proto __THROW #define __LDBL_REDIR_NTH(name,proto) name proto __THROW #define __LDBL_REDIR_DECL(name) #define __REDIRECT_LDBL(name,proto,alias) __REDIRECT (name, proto, alias) #define __REDIRECT_NTH_LDBL(name,proto,alias) __REDIRECT_NTH (name, proto, alias) # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 3 4 #define __stub_bdflush #define __stub_chflags #define __stub_fattach #define __stub_fchflags #define __stub_fdetach #define __stub_getmsg #define __stub_gtty #define __stub_lchmod #define __stub_putmsg #define __stub_revoke #define __stub_setlogin #define __stub_sigreturn #define __stub_sstk #define __stub_stty # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 #define __need_size_t #define __need_wchar_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 187 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 263 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __wchar_t__ #define __WCHAR_T__ #define _WCHAR_T #define _T_WCHAR_ #define _T_WCHAR #define __WCHAR_T #define _WCHAR_T_ #define _BSD_WCHAR_T_ #define _WCHAR_T_DEFINED_ #define _WCHAR_T_DEFINED #define _WCHAR_T_H #define ___int_wchar_t_h #define __INT_WCHAR_T_H #define _GCC_WCHAR_T #define _WCHAR_T_DECLARED # 290 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef _BSD_WCHAR_T_ # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 343 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL # 34 "/usr/include/stdlib.h" 2 3 4 #define _STDLIB_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 #define WNOHANG 1 #define WUNTRACED 2 #define WSTOPPED 2 #define WEXITED 4 #define WCONTINUED 8 #define WNOWAIT 0x01000000 #define __WNOTHREAD 0x20000000 #define __WALL 0x40000000 #define __WCLONE 0x80000000 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 #define __WEXITSTATUS(status) (((status) & 0xff00) >> 8) #define __WTERMSIG(status) ((status) & 0x7f) #define __WSTOPSIG(status) __WEXITSTATUS(status) #define __WIFEXITED(status) (__WTERMSIG(status) == 0) #define __WIFSIGNALED(status) (((signed char) (((status) & 0x7f) + 1) >> 1) > 0) #define __WIFSTOPPED(status) (((status) & 0xff) == 0x7f) #define __WIFCONTINUED(status) ((status) == __W_CONTINUED) #define __WCOREDUMP(status) ((status) & __WCOREFLAG) #define __W_EXITCODE(ret,sig) ((ret) << 8 | (sig)) #define __W_STOPCODE(sig) ((sig) << 8 | 0x7f) #define __W_CONTINUED 0xffff #define __WCOREFLAG 0x80 # 1 "/usr/include/endian.h" 1 3 4 # 20 "/usr/include/endian.h" 3 4 #define _ENDIAN_H 1 # 32 "/usr/include/endian.h" 3 4 #define __LITTLE_ENDIAN 1234 #define __BIG_ENDIAN 4321 #define __PDP_ENDIAN 3412 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 #define __BYTE_ORDER __LITTLE_ENDIAN # 38 "/usr/include/endian.h" 2 3 4 #define __FLOAT_WORD_ORDER __BYTE_ORDER #define LITTLE_ENDIAN __LITTLE_ENDIAN #define BIG_ENDIAN __BIG_ENDIAN #define PDP_ENDIAN __PDP_ENDIAN #define BYTE_ORDER __BYTE_ORDER #define __LONG_LONG_PAIR(HI,LO) LO, HI # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define _BITS_BYTESWAP_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 #define __bswap_constant_16(x) ((unsigned short int) ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8))) #define __bswap_16(x) (__extension__ ({ register unsigned short int __v, __x = (unsigned short int) (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_16 (__x); else __asm__ ("rorw $8, %w0" : "=r" (__v) : "0" (__x) : "cc"); __v; })) # 56 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_constant_32(x) ((((x) & 0xff000000) >> 24) | (((x) & 0x00ff0000) >> 8) | (((x) & 0x0000ff00) << 8) | (((x) & 0x000000ff) << 24)) # 69 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_32(x) (__extension__ ({ register unsigned int __v, __x = (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_32 (__x); else __asm__ ("bswap %0" : "=r" (__v) : "0" (__x)); __v; })) # 101 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_constant_64(x) (__extension__ ((((x) & 0xff00000000000000ull) >> 56) | (((x) & 0x00ff000000000000ull) >> 40) | (((x) & 0x0000ff0000000000ull) >> 24) | (((x) & 0x000000ff00000000ull) >> 8) | (((x) & 0x00000000ff000000ull) << 8) | (((x) & 0x0000000000ff0000ull) << 24) | (((x) & 0x000000000000ff00ull) << 40) | (((x) & 0x00000000000000ffull) << 56))) # 112 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_64(x) (__extension__ ({ register unsigned long __v, __x = (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_64 (__x); else __asm__ ("bswap %q0" : "=r" (__v) : "0" (__x)); __v; })) # 62 "/usr/include/endian.h" 2 3 4 #define htobe16(x) __bswap_16 (x) #define htole16(x) (x) #define be16toh(x) __bswap_16 (x) #define le16toh(x) (x) #define htobe32(x) __bswap_32 (x) #define htole32(x) (x) #define be32toh(x) __bswap_32 (x) #define le32toh(x) (x) #define htobe64(x) __bswap_64 (x) #define htole64(x) (x) #define be64toh(x) __bswap_64 (x) #define le64toh(x) (x) # 66 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; #define w_termsig __wait_terminated.__w_termsig #define w_coredump __wait_terminated.__w_coredump #define w_retcode __wait_terminated.__w_retcode #define w_stopsig __wait_stopped.__w_stopsig #define w_stopval __wait_stopped.__w_stopval # 44 "/usr/include/stdlib.h" 2 3 4 #define __WAIT_INT(status) (__extension__ (((union { __typeof(status) __in; int __i; }) { .__in = (status) }).__i)) # 68 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); #define __WAIT_STATUS_DEFN int * # 85 "/usr/include/stdlib.h" 3 4 #define WEXITSTATUS(status) __WEXITSTATUS (__WAIT_INT (status)) #define WTERMSIG(status) __WTERMSIG (__WAIT_INT (status)) #define WSTOPSIG(status) __WSTOPSIG (__WAIT_INT (status)) #define WIFEXITED(status) __WIFEXITED (__WAIT_INT (status)) #define WIFSIGNALED(status) __WIFSIGNALED (__WAIT_INT (status)) #define WIFSTOPPED(status) __WIFSTOPPED (__WAIT_INT (status)) #define WIFCONTINUED(status) __WIFCONTINUED (__WAIT_INT (status)) typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; #define __ldiv_t_defined 1 __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; #define __lldiv_t_defined 1 #define RAND_MAX 2147483647 #define EXIT_FAILURE 1 #define EXIT_SUCCESS 0 #define MB_CUR_MAX (__ctype_get_mb_cur_max ()) extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define _SYS_TYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define _BITS_TYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 99 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define __S16_TYPE short int #define __U16_TYPE unsigned short int #define __S32_TYPE int #define __U32_TYPE unsigned int #define __SLONGWORD_TYPE long int #define __ULONGWORD_TYPE unsigned long int # 118 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define __SQUAD_TYPE long int #define __UQUAD_TYPE unsigned long int #define __SWORD_TYPE long int #define __UWORD_TYPE unsigned long int #define __SLONG32_TYPE int #define __ULONG32_TYPE unsigned int #define __S64_TYPE long int #define __U64_TYPE unsigned long int #define __STD_TYPE typedef # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 3 4 #define _BITS_TYPESIZES_H 1 #define __DEV_T_TYPE __UQUAD_TYPE #define __UID_T_TYPE __U32_TYPE #define __GID_T_TYPE __U32_TYPE #define __INO_T_TYPE __ULONGWORD_TYPE #define __INO64_T_TYPE __UQUAD_TYPE #define __MODE_T_TYPE __U32_TYPE #define __NLINK_T_TYPE __UWORD_TYPE #define __OFF_T_TYPE __SLONGWORD_TYPE #define __OFF64_T_TYPE __SQUAD_TYPE #define __PID_T_TYPE __S32_TYPE #define __RLIM_T_TYPE __ULONGWORD_TYPE #define __RLIM64_T_TYPE __UQUAD_TYPE #define __BLKCNT_T_TYPE __SLONGWORD_TYPE #define __BLKCNT64_T_TYPE __SQUAD_TYPE #define __FSBLKCNT_T_TYPE __ULONGWORD_TYPE #define __FSBLKCNT64_T_TYPE __UQUAD_TYPE #define __FSFILCNT_T_TYPE __ULONGWORD_TYPE #define __FSFILCNT64_T_TYPE __UQUAD_TYPE #define __ID_T_TYPE __U32_TYPE #define __CLOCK_T_TYPE __SLONGWORD_TYPE #define __TIME_T_TYPE __SLONGWORD_TYPE #define __USECONDS_T_TYPE __U32_TYPE #define __SUSECONDS_T_TYPE __SLONGWORD_TYPE #define __DADDR_T_TYPE __S32_TYPE #define __SWBLK_T_TYPE __SLONGWORD_TYPE #define __KEY_T_TYPE __S32_TYPE #define __CLOCKID_T_TYPE __S32_TYPE #define __TIMER_T_TYPE void * #define __BLKSIZE_T_TYPE __SLONGWORD_TYPE #define __FSID_T_TYPE struct { int __val[2]; } #define __SSIZE_T_TYPE __SWORD_TYPE #define __FD_SETSIZE 1024 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; #undef __STD_TYPE # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; #define __u_char_defined typedef __loff_t loff_t; typedef __ino_t ino_t; #define __ino_t_defined typedef __dev_t dev_t; #define __dev_t_defined typedef __gid_t gid_t; #define __gid_t_defined typedef __mode_t mode_t; #define __mode_t_defined typedef __nlink_t nlink_t; #define __nlink_t_defined typedef __uid_t uid_t; #define __uid_t_defined typedef __off_t off_t; #define __off_t_defined typedef __pid_t pid_t; #define __pid_t_defined typedef __id_t id_t; #define __id_t_defined typedef __ssize_t ssize_t; #define __ssize_t_defined typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; #define __daddr_t_defined typedef __key_t key_t; #define __key_t_defined #define __need_clock_t #define __need_time_t #define __need_timer_t #define __need_clockid_t # 1 "/usr/include/time.h" 1 3 4 # 54 "/usr/include/time.h" 3 4 #define __clock_t_defined 1 typedef __clock_t clock_t; #undef __need_clock_t #define __time_t_defined 1 typedef __time_t time_t; #undef __need_time_t #define __clockid_t_defined 1 typedef __clockid_t clockid_t; #undef __clockid_time_t #define __timer_t_defined 1 typedef __timer_t timer_t; #undef __need_timer_t # 127 "/usr/include/time.h" 3 4 #undef __need_timespec # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define __need_size_t # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 408 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_NULL # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 188 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define __intN_t(N,MODE) typedef int int ##N ##_t __attribute__ ((__mode__ (MODE))) #define __u_intN_t(N,MODE) typedef unsigned int u_int ##N ##_t __attribute__ ((__mode__ (MODE))) #define __int8_t_defined typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); #define __BIT_TYPES_DEFINED__ 1 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 #define _SYS_SELECT_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 #define __FD_ZERO_STOS "stosq" #define __FD_ZERO(fdsp) do { int __d0, __d1; __asm__ __volatile__ ("cld; rep; " __FD_ZERO_STOS : "=c" (__d0), "=D" (__d1) : "a" (0), "0" (sizeof (fd_set) / sizeof (__fd_mask)), "1" (&__FDS_BITS (fdsp)[0]) : "memory"); } while (0) # 59 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 #define __FD_SET(d,set) ((void) (__FDS_BITS (set)[__FD_ELT (d)] |= __FD_MASK (d))) #define __FD_CLR(d,set) ((void) (__FDS_BITS (set)[__FD_ELT (d)] &= ~__FD_MASK (d))) #define __FD_ISSET(d,set) ((__FDS_BITS (set)[__FD_ELT (d)] & __FD_MASK (d)) != 0) # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 #define _SIGSET_H_types 1 typedef int __sig_atomic_t; #define _SIGSET_NWORDS (1024 / (8 * sizeof (unsigned long int))) typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 #define __sigset_t_defined typedef __sigset_t sigset_t; #define __need_time_t #define __need_timespec # 1 "/usr/include/time.h" 1 3 4 # 67 "/usr/include/time.h" 3 4 #undef __need_clock_t # 83 "/usr/include/time.h" 3 4 #undef __need_time_t # 95 "/usr/include/time.h" 3 4 #undef __clockid_time_t # 107 "/usr/include/time.h" 3 4 #undef __need_timer_t #define __timespec_defined 1 struct timespec { __time_t tv_sec; long int tv_nsec; }; #undef __need_timespec # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 #define __need_timeval # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #define _STRUCT_TIMEVAL 1 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 99 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #undef __need_timeval # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; #define __suseconds_t_defined typedef long int __fd_mask; #undef __NFDBITS #define __NFDBITS (8 * (int) sizeof (__fd_mask)) #define __FD_ELT(d) ((d) / __NFDBITS) #define __FD_MASK(d) ((__fd_mask) 1 << ((d) % __NFDBITS)) typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; #define __FDS_BITS(set) ((set)->__fds_bits) } fd_set; #define FD_SETSIZE __FD_SETSIZE typedef __fd_mask fd_mask; #define NFDBITS __NFDBITS #define FD_SET(fd,fdsetp) __FD_SET (fd, fdsetp) #define FD_CLR(fd,fdsetp) __FD_CLR (fd, fdsetp) #define FD_ISSET(fd,fdsetp) __FD_ISSET (fd, fdsetp) #define FD_ZERO(fdsetp) __FD_ZERO (fdsetp) # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 #define _SYS_SYSMACROS_H 1 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 #define major(dev) gnu_dev_major (dev) #define minor(dev) gnu_dev_minor (dev) #define makedev(maj,min) gnu_dev_makedev (maj, min) # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; #define __blksize_t_defined typedef __blkcnt_t blkcnt_t; #define __blkcnt_t_defined typedef __fsblkcnt_t fsblkcnt_t; #define __fsblkcnt_t_defined typedef __fsfilcnt_t fsfilcnt_t; #define __fsfilcnt_t_defined # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 #define _BITS_PTHREADTYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 #define __SIZEOF_PTHREAD_ATTR_T 56 #define __SIZEOF_PTHREAD_MUTEX_T 40 #define __SIZEOF_PTHREAD_MUTEXATTR_T 4 #define __SIZEOF_PTHREAD_COND_T 48 #define __SIZEOF_PTHREAD_CONDATTR_T 4 #define __SIZEOF_PTHREAD_RWLOCK_T 56 #define __SIZEOF_PTHREAD_RWLOCKATTR_T 8 #define __SIZEOF_PTHREAD_BARRIER_T 32 #define __SIZEOF_PTHREAD_BARRIERATTR_T 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; #define __PTHREAD_MUTEX_HAVE_PREV 1 # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); #define __malloc_and_calloc_defined extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 20 "/usr/include/alloca.h" 3 4 #define _ALLOCA_H 1 #define __need_size_t # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 408 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_NULL # 26 "/usr/include/alloca.h" 2 3 4 #undef alloca extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); #define alloca(size) __builtin_alloca (size) # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; #define __COMPAR_FN_T typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 962 "/usr/include/stdlib.h" 3 4 #undef __need_malloc_and_calloc # 121 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 123 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 27 "/usr/include/stdio.h" 3 4 #define _STDIO_H 1 #define __need_size_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL # 35 "/usr/include/stdio.h" 2 3 4 #define __need_FILE #define __need___FILE struct _IO_FILE; typedef struct _IO_FILE FILE; #define __FILE_defined 1 #undef __need_FILE typedef struct _IO_FILE __FILE; #define ____FILE_defined 1 #undef __need___FILE #define _STDIO_USES_IOSTREAM # 1 "/usr/include/libio.h" 1 3 4 # 30 "/usr/include/libio.h" 3 4 #define _IO_STDIO_H # 1 "/usr/include/_G_config.h" 1 3 4 #define _G_config_h 1 #define __need_size_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL # 16 "/usr/include/_G_config.h" 2 3 4 #define __need_mbstate_t # 1 "/usr/include/wchar.h" 1 3 4 # 81 "/usr/include/wchar.h" 3 4 #define __mbstate_t_defined 1 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; #undef __need_mbstate_t # 896 "/usr/include/wchar.h" 3 4 #undef __need_mbstate_t #undef __need_wint_t # 21 "/usr/include/_G_config.h" 2 3 4 #define _G_size_t size_t typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; #define _G_ssize_t __ssize_t #define _G_off_t __off_t #define _G_off64_t __off64_t #define _G_pid_t __pid_t #define _G_uid_t __uid_t #define _G_wchar_t wchar_t #define _G_wint_t wint_t #define _G_stat64 stat64 # 53 "/usr/include/_G_config.h" 3 4 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); #define _G_HAVE_BOOL 1 #define _G_HAVE_ATEXIT 1 #define _G_HAVE_SYS_CDEFS 1 #define _G_HAVE_SYS_WAIT 1 #define _G_NEED_STDARG_H 1 #define _G_va_list __gnuc_va_list #define _G_HAVE_PRINTF_FP 1 #define _G_HAVE_MMAP 1 #define _G_HAVE_MREMAP 1 #define _G_HAVE_LONG_DOUBLE_IO 1 #define _G_HAVE_IO_FILE_OPEN 1 #define _G_HAVE_IO_GETLINE_INFO 1 #define _G_IO_IO_FILE_VERSION 0x20001 #define _G_OPEN64 __open64 #define _G_LSEEK64 __lseek64 #define _G_MMAP64 __mmap64 #define _G_FSTAT64(fd,buf) __fxstat64 (_STAT_VER, fd, buf) #define _G_HAVE_ST_BLKSIZE defined (_STATBUF_ST_BLKSIZE) #define _G_BUFSIZ 8192 #define _G_NAMES_HAVE_UNDERSCORE 0 #define _G_VTABLE_LABEL_HAS_LENGTH 1 #define _G_USING_THUNKS 1 #define _G_VTABLE_LABEL_PREFIX "__vt_" #define _G_VTABLE_LABEL_PREFIX_ID __vt_ #define _G_ARGS(ARGLIST) ARGLIST # 33 "/usr/include/libio.h" 2 3 4 #define _IO_pos_t _G_fpos_t #define _IO_fpos_t _G_fpos_t #define _IO_fpos64_t _G_fpos64_t #define _IO_size_t _G_size_t #define _IO_ssize_t _G_ssize_t #define _IO_off_t _G_off_t #define _IO_off64_t _G_off64_t #define _IO_pid_t _G_pid_t #define _IO_uid_t _G_uid_t #define _IO_iconv_t _G_iconv_t #define _IO_HAVE_SYS_WAIT _G_HAVE_SYS_WAIT #define _IO_HAVE_ST_BLKSIZE _G_HAVE_ST_BLKSIZE #define _IO_BUFSIZ _G_BUFSIZ #define _IO_va_list _G_va_list #define _IO_wint_t _G_wint_t #define __need___va_list # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 #undef __need___va_list #define __GNUC_VA_LIST typedef __builtin_va_list __gnuc_va_list; # 54 "/usr/include/libio.h" 2 3 4 #undef _IO_va_list #define _IO_va_list __gnuc_va_list # 76 "/usr/include/libio.h" 3 4 #define _PARAMS(protos) __P(protos) #define _IO_UNIFIED_JUMPTABLES 1 #define EOF (-1) # 105 "/usr/include/libio.h" 3 4 #define _IOS_INPUT 1 #define _IOS_OUTPUT 2 #define _IOS_ATEND 4 #define _IOS_APPEND 8 #define _IOS_TRUNC 16 #define _IOS_NOCREATE 32 #define _IOS_NOREPLACE 64 #define _IOS_BIN 128 #define _IO_MAGIC 0xFBAD0000 #define _OLD_STDIO_MAGIC 0xFABC0000 #define _IO_MAGIC_MASK 0xFFFF0000 #define _IO_USER_BUF 1 #define _IO_UNBUFFERED 2 #define _IO_NO_READS 4 #define _IO_NO_WRITES 8 #define _IO_EOF_SEEN 0x10 #define _IO_ERR_SEEN 0x20 #define _IO_DELETE_DONT_CLOSE 0x40 #define _IO_LINKED 0x80 #define _IO_IN_BACKUP 0x100 #define _IO_LINE_BUF 0x200 #define _IO_TIED_PUT_GET 0x400 #define _IO_CURRENTLY_PUTTING 0x800 #define _IO_IS_APPENDING 0x1000 #define _IO_IS_FILEBUF 0x2000 #define _IO_BAD_SEEN 0x4000 #define _IO_USER_LOCK 0x8000 #define _IO_FLAGS2_MMAP 1 #define _IO_FLAGS2_NOTCANCEL 2 #define _IO_FLAGS2_USER_WBUF 8 #define _IO_SKIPWS 01 #define _IO_LEFT 02 #define _IO_RIGHT 04 #define _IO_INTERNAL 010 #define _IO_DEC 020 #define _IO_OCT 040 #define _IO_HEX 0100 #define _IO_SHOWBASE 0200 #define _IO_SHOWPOINT 0400 #define _IO_UPPERCASE 01000 #define _IO_SHOWPOS 02000 #define _IO_SCIENTIFIC 04000 #define _IO_FIXED 010000 #define _IO_UNITBUF 020000 #define _IO_STDIO 040000 #define _IO_DONT_CLOSE 0100000 #define _IO_BOOLALPHA 0200000 struct _IO_jump_t; struct _IO_FILE; # 182 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 205 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 273 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; #define _IO_file_flags _flags char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; #define __HAVE_COLUMN unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 321 "/usr/include/libio.h" 3 4 __off64_t _offset; # 330 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; #define _IO_stdin ((_IO_FILE*)(&_IO_2_1_stdin_)) #define _IO_stdout ((_IO_FILE*)(&_IO_2_1_stdout_)) #define _IO_stderr ((_IO_FILE*)(&_IO_2_1_stderr_)) # 366 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 418 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); #define _IO_BE(expr,res) __builtin_expect ((expr), res) #define _IO_getc_unlocked(_fp) (_IO_BE ((_fp)->_IO_read_ptr >= (_fp)->_IO_read_end, 0) ? __uflow (_fp) : *(unsigned char *) (_fp)->_IO_read_ptr++) #define _IO_peekc_unlocked(_fp) (_IO_BE ((_fp)->_IO_read_ptr >= (_fp)->_IO_read_end, 0) && __underflow (_fp) == EOF ? EOF : *(unsigned char *) (_fp)->_IO_read_ptr) #define _IO_putc_unlocked(_ch,_fp) (_IO_BE ((_fp)->_IO_write_ptr >= (_fp)->_IO_write_end, 0) ? __overflow (_fp, (unsigned char) (_ch)) : (unsigned char) (*(_fp)->_IO_write_ptr++ = (_ch))) # 459 "/usr/include/libio.h" 3 4 #define _IO_feof_unlocked(__fp) (((__fp)->_flags & _IO_EOF_SEEN) != 0) #define _IO_ferror_unlocked(__fp) (((__fp)->_flags & _IO_ERR_SEEN) != 0) extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_peekc_locked (_IO_FILE *__fp); #define _IO_PENDING_OUTPUT_COUNT(_fp) ((_fp)->_IO_write_ptr - (_fp)->_IO_write_base) extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 484 "/usr/include/libio.h" 3 4 #define _IO_peekc(_fp) _IO_peekc_unlocked (_fp) #define _IO_flockfile(_fp) #define _IO_funlockfile(_fp) #define _IO_ftrylockfile(_fp) #define _IO_cleanup_region_start(_fct,_fp) #define _IO_cleanup_region_end(_Doit) extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 76 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; #define _VA_LIST_DEFINED # 109 "/usr/include/stdio.h" 3 4 typedef _G_fpos_t fpos_t; #define _IOFBF 0 #define _IOLBF 1 #define _IONBF 2 #define BUFSIZ _IO_BUFSIZ # 141 "/usr/include/stdio.h" 3 4 #define SEEK_SET 0 #define SEEK_CUR 1 #define SEEK_END 2 # 152 "/usr/include/stdio.h" 3 4 #define P_tmpdir "/tmp" # 165 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdio_lim.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/stdio_lim.h" 3 4 #define L_tmpnam 20 #define TMP_MAX 238328 #define FILENAME_MAX 4096 #define L_ctermid 9 #undef FOPEN_MAX #define FOPEN_MAX 16 # 166 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; #define stdin stdin #define stdout stdout #define stderr stderr extern int remove (__const char *__filename) __attribute__ ((__nothrow__ , __leaf__)); extern int rename (__const char *__old, __const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern FILE *tmpfile (void) ; # 210 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; # 228 "/usr/include/stdio.h" 3 4 extern char *tempnam (__const char *__dir, __const char *__pfx) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 253 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 267 "/usr/include/stdio.h" 3 4 extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 296 "/usr/include/stdio.h" 3 4 # 307 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, __const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; # 320 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 418 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__ , __leaf__)); # 449 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (__const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__ , __leaf__)) ; # 469 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 500 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 528 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); #define getc(_fp) _IO_getc (_fp) extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 567 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); #define putc(_ch,_fp) _IO_putc (_ch, _fp) # 600 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; # 662 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 734 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 770 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 789 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 812 "/usr/include/stdio.h" 3 4 # 821 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void perror (__const char *__s); # 1 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern __const char *__const sys_errlist[]; # 851 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; # 870 "/usr/include/stdio.h" 3 4 extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 910 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); # 940 "/usr/include/stdio.h" 3 4 # 126 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/stack.h" 1 3 4 # 60 "/usr/include/openssl/stack.h" 3 4 #define HEADER_STACK_H typedef struct stack_st { int num; char **data; int sorted; int num_alloc; int (*comp)(const void *, const void *); } _STACK; #define M_sk_num(sk) ((sk) ? (sk)->num:-1) #define M_sk_value(sk,n) ((sk) ? (sk)->data[n] : NULL) int sk_num(const _STACK *); void *sk_value(const _STACK *, int); void *sk_set(_STACK *, int, void *); _STACK *sk_new(int (*cmp)(const void *, const void *)); _STACK *sk_new_null(void); void sk_free(_STACK *); void sk_pop_free(_STACK *st, void (*func)(void *)); int sk_insert(_STACK *sk, void *data, int where); void *sk_delete(_STACK *st, int loc); void *sk_delete_ptr(_STACK *st, void *p); int sk_find(_STACK *st, void *data); int sk_find_ex(_STACK *st, void *data); int sk_push(_STACK *st, void *data); int sk_unshift(_STACK *st, void *data); void *sk_shift(_STACK *st); void *sk_pop(_STACK *st); void sk_zero(_STACK *st); int (*sk_set_cmp_func(_STACK *sk, int (*c)(const void *, const void *))) (const void *, const void *); _STACK *sk_dup(_STACK *st); void sk_sort(_STACK *st); int sk_is_sorted(const _STACK *st); # 129 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/safestack.h" 1 3 4 # 56 "/usr/include/openssl/safestack.h" 3 4 #define HEADER_SAFESTACK_H #define CHECKED_PTR_OF(type,p) ((void*) (1 ? p : (type*)0)) # 70 "/usr/include/openssl/safestack.h" 3 4 #define CHECKED_STACK_OF(type,p) ((_STACK*) (1 ? p : (STACK_OF(type)*)0)) #define CHECKED_SK_FREE_FUNC(type,p) ((void (*)(void *)) ((1 ? p : (void (*)(type *))0))) #define CHECKED_SK_FREE_FUNC2(type,p) ((void (*)(void *)) ((1 ? p : (void (*)(type))0))) #define CHECKED_SK_CMP_FUNC(type,p) ((int (*)(const void *, const void *)) ((1 ? p : (int (*)(const type * const *, const type * const *))0))) #define STACK_OF(type) struct stack_st_ ##type #define PREDECLARE_STACK_OF(type) STACK_OF(type); #define DECLARE_STACK_OF(type) STACK_OF(type) { _STACK stack; }; #define DECLARE_SPECIAL_STACK_OF(type,type2) STACK_OF(type) { _STACK stack; }; #define IMPLEMENT_STACK_OF(type) # 113 "/usr/include/openssl/safestack.h" 3 4 typedef char *OPENSSL_STRING; typedef const char *OPENSSL_CSTRING; # 125 "/usr/include/openssl/safestack.h" 3 4 struct stack_st_OPENSSL_STRING { _STACK stack; }; typedef void *OPENSSL_BLOCK; struct stack_st_OPENSSL_BLOCK { _STACK stack; }; #define SKM_sk_new(type,cmp) ((STACK_OF(type) *)sk_new(CHECKED_SK_CMP_FUNC(type, cmp))) #define SKM_sk_new_null(type) ((STACK_OF(type) *)sk_new_null()) #define SKM_sk_free(type,st) sk_free(CHECKED_STACK_OF(type, st)) #define SKM_sk_num(type,st) sk_num(CHECKED_STACK_OF(type, st)) #define SKM_sk_value(type,st,i) ((type *)sk_value(CHECKED_STACK_OF(type, st), i)) #define SKM_sk_set(type,st,i,val) sk_set(CHECKED_STACK_OF(type, st), i, CHECKED_PTR_OF(type, val)) #define SKM_sk_zero(type,st) sk_zero(CHECKED_STACK_OF(type, st)) #define SKM_sk_push(type,st,val) sk_push(CHECKED_STACK_OF(type, st), CHECKED_PTR_OF(type, val)) #define SKM_sk_unshift(type,st,val) sk_unshift(CHECKED_STACK_OF(type, st), CHECKED_PTR_OF(type, val)) #define SKM_sk_find(type,st,val) sk_find(CHECKED_STACK_OF(type, st), CHECKED_PTR_OF(type, val)) #define SKM_sk_find_ex(type,st,val) sk_find_ex(CHECKED_STACK_OF(type, st), CHECKED_PTR_OF(type, val)) #define SKM_sk_delete(type,st,i) (type *)sk_delete(CHECKED_STACK_OF(type, st), i) #define SKM_sk_delete_ptr(type,st,ptr) (type *)sk_delete_ptr(CHECKED_STACK_OF(type, st), CHECKED_PTR_OF(type, ptr)) #define SKM_sk_insert(type,st,val,i) sk_insert(CHECKED_STACK_OF(type, st), CHECKED_PTR_OF(type, val), i) #define SKM_sk_set_cmp_func(type,st,cmp) ((int (*)(const type * const *,const type * const *)) sk_set_cmp_func(CHECKED_STACK_OF(type, st), CHECKED_SK_CMP_FUNC(type, cmp))) #define SKM_sk_dup(type,st) (STACK_OF(type) *)sk_dup(CHECKED_STACK_OF(type, st)) #define SKM_sk_pop_free(type,st,free_func) sk_pop_free(CHECKED_STACK_OF(type, st), CHECKED_SK_FREE_FUNC(type, free_func)) #define SKM_sk_shift(type,st) (type *)sk_shift(CHECKED_STACK_OF(type, st)) #define SKM_sk_pop(type,st) (type *)sk_pop(CHECKED_STACK_OF(type, st)) #define SKM_sk_sort(type,st) sk_sort(CHECKED_STACK_OF(type, st)) #define SKM_sk_is_sorted(type,st) sk_is_sorted(CHECKED_STACK_OF(type, st)) #define SKM_ASN1_SET_OF_d2i(type,st,pp,length,d2i_func,free_func,ex_tag,ex_class) (STACK_OF(type) *)d2i_ASN1_SET( (STACK_OF(OPENSSL_BLOCK) **)CHECKED_PTR_OF(STACK_OF(type)*, st), pp, length, CHECKED_D2I_OF(type, d2i_func), CHECKED_SK_FREE_FUNC(type, free_func), ex_tag, ex_class) #define SKM_ASN1_SET_OF_i2d(type,st,pp,i2d_func,ex_tag,ex_class,is_set) i2d_ASN1_SET((STACK_OF(OPENSSL_BLOCK) *)CHECKED_STACK_OF(type, st), pp, CHECKED_I2D_OF(type, i2d_func), ex_tag, ex_class, is_set) #define SKM_ASN1_seq_pack(type,st,i2d_func,buf,len) ASN1_seq_pack(CHECKED_PTR_OF(STACK_OF(type), st), CHECKED_I2D_OF(type, i2d_func), buf, len) #define SKM_ASN1_seq_unpack(type,buf,len,d2i_func,free_func) (STACK_OF(type) *)ASN1_seq_unpack(buf, len, CHECKED_D2I_OF(type, d2i_func), CHECKED_SK_FREE_FUNC(type, free_func)) #define SKM_PKCS12_decrypt_d2i(type,algor,d2i_func,free_func,pass,passlen,oct,seq) (STACK_OF(type) *)PKCS12_decrypt_d2i(algor, CHECKED_D2I_OF(type, d2i_func), CHECKED_SK_FREE_FUNC(type, free_func), pass, passlen, oct, seq) #define sk_ACCESS_DESCRIPTION_new(cmp) SKM_sk_new(ACCESS_DESCRIPTION, (cmp)) #define sk_ACCESS_DESCRIPTION_new_null() SKM_sk_new_null(ACCESS_DESCRIPTION) #define sk_ACCESS_DESCRIPTION_free(st) SKM_sk_free(ACCESS_DESCRIPTION, (st)) #define sk_ACCESS_DESCRIPTION_num(st) SKM_sk_num(ACCESS_DESCRIPTION, (st)) #define sk_ACCESS_DESCRIPTION_value(st,i) SKM_sk_value(ACCESS_DESCRIPTION, (st), (i)) #define sk_ACCESS_DESCRIPTION_set(st,i,val) SKM_sk_set(ACCESS_DESCRIPTION, (st), (i), (val)) #define sk_ACCESS_DESCRIPTION_zero(st) SKM_sk_zero(ACCESS_DESCRIPTION, (st)) #define sk_ACCESS_DESCRIPTION_push(st,val) SKM_sk_push(ACCESS_DESCRIPTION, (st), (val)) #define sk_ACCESS_DESCRIPTION_unshift(st,val) SKM_sk_unshift(ACCESS_DESCRIPTION, (st), (val)) #define sk_ACCESS_DESCRIPTION_find(st,val) SKM_sk_find(ACCESS_DESCRIPTION, (st), (val)) #define sk_ACCESS_DESCRIPTION_find_ex(st,val) SKM_sk_find_ex(ACCESS_DESCRIPTION, (st), (val)) #define sk_ACCESS_DESCRIPTION_delete(st,i) SKM_sk_delete(ACCESS_DESCRIPTION, (st), (i)) #define sk_ACCESS_DESCRIPTION_delete_ptr(st,ptr) SKM_sk_delete_ptr(ACCESS_DESCRIPTION, (st), (ptr)) #define sk_ACCESS_DESCRIPTION_insert(st,val,i) SKM_sk_insert(ACCESS_DESCRIPTION, (st), (val), (i)) #define sk_ACCESS_DESCRIPTION_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ACCESS_DESCRIPTION, (st), (cmp)) #define sk_ACCESS_DESCRIPTION_dup(st) SKM_sk_dup(ACCESS_DESCRIPTION, st) #define sk_ACCESS_DESCRIPTION_pop_free(st,free_func) SKM_sk_pop_free(ACCESS_DESCRIPTION, (st), (free_func)) #define sk_ACCESS_DESCRIPTION_shift(st) SKM_sk_shift(ACCESS_DESCRIPTION, (st)) #define sk_ACCESS_DESCRIPTION_pop(st) SKM_sk_pop(ACCESS_DESCRIPTION, (st)) #define sk_ACCESS_DESCRIPTION_sort(st) SKM_sk_sort(ACCESS_DESCRIPTION, (st)) #define sk_ACCESS_DESCRIPTION_is_sorted(st) SKM_sk_is_sorted(ACCESS_DESCRIPTION, (st)) #define sk_ASIdOrRange_new(cmp) SKM_sk_new(ASIdOrRange, (cmp)) #define sk_ASIdOrRange_new_null() SKM_sk_new_null(ASIdOrRange) #define sk_ASIdOrRange_free(st) SKM_sk_free(ASIdOrRange, (st)) #define sk_ASIdOrRange_num(st) SKM_sk_num(ASIdOrRange, (st)) #define sk_ASIdOrRange_value(st,i) SKM_sk_value(ASIdOrRange, (st), (i)) #define sk_ASIdOrRange_set(st,i,val) SKM_sk_set(ASIdOrRange, (st), (i), (val)) #define sk_ASIdOrRange_zero(st) SKM_sk_zero(ASIdOrRange, (st)) #define sk_ASIdOrRange_push(st,val) SKM_sk_push(ASIdOrRange, (st), (val)) #define sk_ASIdOrRange_unshift(st,val) SKM_sk_unshift(ASIdOrRange, (st), (val)) #define sk_ASIdOrRange_find(st,val) SKM_sk_find(ASIdOrRange, (st), (val)) #define sk_ASIdOrRange_find_ex(st,val) SKM_sk_find_ex(ASIdOrRange, (st), (val)) #define sk_ASIdOrRange_delete(st,i) SKM_sk_delete(ASIdOrRange, (st), (i)) #define sk_ASIdOrRange_delete_ptr(st,ptr) SKM_sk_delete_ptr(ASIdOrRange, (st), (ptr)) #define sk_ASIdOrRange_insert(st,val,i) SKM_sk_insert(ASIdOrRange, (st), (val), (i)) #define sk_ASIdOrRange_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ASIdOrRange, (st), (cmp)) #define sk_ASIdOrRange_dup(st) SKM_sk_dup(ASIdOrRange, st) #define sk_ASIdOrRange_pop_free(st,free_func) SKM_sk_pop_free(ASIdOrRange, (st), (free_func)) #define sk_ASIdOrRange_shift(st) SKM_sk_shift(ASIdOrRange, (st)) #define sk_ASIdOrRange_pop(st) SKM_sk_pop(ASIdOrRange, (st)) #define sk_ASIdOrRange_sort(st) SKM_sk_sort(ASIdOrRange, (st)) #define sk_ASIdOrRange_is_sorted(st) SKM_sk_is_sorted(ASIdOrRange, (st)) #define sk_ASN1_GENERALSTRING_new(cmp) SKM_sk_new(ASN1_GENERALSTRING, (cmp)) #define sk_ASN1_GENERALSTRING_new_null() SKM_sk_new_null(ASN1_GENERALSTRING) #define sk_ASN1_GENERALSTRING_free(st) SKM_sk_free(ASN1_GENERALSTRING, (st)) #define sk_ASN1_GENERALSTRING_num(st) SKM_sk_num(ASN1_GENERALSTRING, (st)) #define sk_ASN1_GENERALSTRING_value(st,i) SKM_sk_value(ASN1_GENERALSTRING, (st), (i)) #define sk_ASN1_GENERALSTRING_set(st,i,val) SKM_sk_set(ASN1_GENERALSTRING, (st), (i), (val)) #define sk_ASN1_GENERALSTRING_zero(st) SKM_sk_zero(ASN1_GENERALSTRING, (st)) #define sk_ASN1_GENERALSTRING_push(st,val) SKM_sk_push(ASN1_GENERALSTRING, (st), (val)) #define sk_ASN1_GENERALSTRING_unshift(st,val) SKM_sk_unshift(ASN1_GENERALSTRING, (st), (val)) #define sk_ASN1_GENERALSTRING_find(st,val) SKM_sk_find(ASN1_GENERALSTRING, (st), (val)) #define sk_ASN1_GENERALSTRING_find_ex(st,val) SKM_sk_find_ex(ASN1_GENERALSTRING, (st), (val)) #define sk_ASN1_GENERALSTRING_delete(st,i) SKM_sk_delete(ASN1_GENERALSTRING, (st), (i)) #define sk_ASN1_GENERALSTRING_delete_ptr(st,ptr) SKM_sk_delete_ptr(ASN1_GENERALSTRING, (st), (ptr)) #define sk_ASN1_GENERALSTRING_insert(st,val,i) SKM_sk_insert(ASN1_GENERALSTRING, (st), (val), (i)) #define sk_ASN1_GENERALSTRING_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ASN1_GENERALSTRING, (st), (cmp)) #define sk_ASN1_GENERALSTRING_dup(st) SKM_sk_dup(ASN1_GENERALSTRING, st) #define sk_ASN1_GENERALSTRING_pop_free(st,free_func) SKM_sk_pop_free(ASN1_GENERALSTRING, (st), (free_func)) #define sk_ASN1_GENERALSTRING_shift(st) SKM_sk_shift(ASN1_GENERALSTRING, (st)) #define sk_ASN1_GENERALSTRING_pop(st) SKM_sk_pop(ASN1_GENERALSTRING, (st)) #define sk_ASN1_GENERALSTRING_sort(st) SKM_sk_sort(ASN1_GENERALSTRING, (st)) #define sk_ASN1_GENERALSTRING_is_sorted(st) SKM_sk_is_sorted(ASN1_GENERALSTRING, (st)) #define sk_ASN1_INTEGER_new(cmp) SKM_sk_new(ASN1_INTEGER, (cmp)) #define sk_ASN1_INTEGER_new_null() SKM_sk_new_null(ASN1_INTEGER) #define sk_ASN1_INTEGER_free(st) SKM_sk_free(ASN1_INTEGER, (st)) #define sk_ASN1_INTEGER_num(st) SKM_sk_num(ASN1_INTEGER, (st)) #define sk_ASN1_INTEGER_value(st,i) SKM_sk_value(ASN1_INTEGER, (st), (i)) #define sk_ASN1_INTEGER_set(st,i,val) SKM_sk_set(ASN1_INTEGER, (st), (i), (val)) #define sk_ASN1_INTEGER_zero(st) SKM_sk_zero(ASN1_INTEGER, (st)) #define sk_ASN1_INTEGER_push(st,val) SKM_sk_push(ASN1_INTEGER, (st), (val)) #define sk_ASN1_INTEGER_unshift(st,val) SKM_sk_unshift(ASN1_INTEGER, (st), (val)) #define sk_ASN1_INTEGER_find(st,val) SKM_sk_find(ASN1_INTEGER, (st), (val)) #define sk_ASN1_INTEGER_find_ex(st,val) SKM_sk_find_ex(ASN1_INTEGER, (st), (val)) #define sk_ASN1_INTEGER_delete(st,i) SKM_sk_delete(ASN1_INTEGER, (st), (i)) #define sk_ASN1_INTEGER_delete_ptr(st,ptr) SKM_sk_delete_ptr(ASN1_INTEGER, (st), (ptr)) #define sk_ASN1_INTEGER_insert(st,val,i) SKM_sk_insert(ASN1_INTEGER, (st), (val), (i)) #define sk_ASN1_INTEGER_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ASN1_INTEGER, (st), (cmp)) #define sk_ASN1_INTEGER_dup(st) SKM_sk_dup(ASN1_INTEGER, st) #define sk_ASN1_INTEGER_pop_free(st,free_func) SKM_sk_pop_free(ASN1_INTEGER, (st), (free_func)) #define sk_ASN1_INTEGER_shift(st) SKM_sk_shift(ASN1_INTEGER, (st)) #define sk_ASN1_INTEGER_pop(st) SKM_sk_pop(ASN1_INTEGER, (st)) #define sk_ASN1_INTEGER_sort(st) SKM_sk_sort(ASN1_INTEGER, (st)) #define sk_ASN1_INTEGER_is_sorted(st) SKM_sk_is_sorted(ASN1_INTEGER, (st)) #define sk_ASN1_OBJECT_new(cmp) SKM_sk_new(ASN1_OBJECT, (cmp)) #define sk_ASN1_OBJECT_new_null() SKM_sk_new_null(ASN1_OBJECT) #define sk_ASN1_OBJECT_free(st) SKM_sk_free(ASN1_OBJECT, (st)) #define sk_ASN1_OBJECT_num(st) SKM_sk_num(ASN1_OBJECT, (st)) #define sk_ASN1_OBJECT_value(st,i) SKM_sk_value(ASN1_OBJECT, (st), (i)) #define sk_ASN1_OBJECT_set(st,i,val) SKM_sk_set(ASN1_OBJECT, (st), (i), (val)) #define sk_ASN1_OBJECT_zero(st) SKM_sk_zero(ASN1_OBJECT, (st)) #define sk_ASN1_OBJECT_push(st,val) SKM_sk_push(ASN1_OBJECT, (st), (val)) #define sk_ASN1_OBJECT_unshift(st,val) SKM_sk_unshift(ASN1_OBJECT, (st), (val)) #define sk_ASN1_OBJECT_find(st,val) SKM_sk_find(ASN1_OBJECT, (st), (val)) #define sk_ASN1_OBJECT_find_ex(st,val) SKM_sk_find_ex(ASN1_OBJECT, (st), (val)) #define sk_ASN1_OBJECT_delete(st,i) SKM_sk_delete(ASN1_OBJECT, (st), (i)) #define sk_ASN1_OBJECT_delete_ptr(st,ptr) SKM_sk_delete_ptr(ASN1_OBJECT, (st), (ptr)) #define sk_ASN1_OBJECT_insert(st,val,i) SKM_sk_insert(ASN1_OBJECT, (st), (val), (i)) #define sk_ASN1_OBJECT_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ASN1_OBJECT, (st), (cmp)) #define sk_ASN1_OBJECT_dup(st) SKM_sk_dup(ASN1_OBJECT, st) #define sk_ASN1_OBJECT_pop_free(st,free_func) SKM_sk_pop_free(ASN1_OBJECT, (st), (free_func)) #define sk_ASN1_OBJECT_shift(st) SKM_sk_shift(ASN1_OBJECT, (st)) #define sk_ASN1_OBJECT_pop(st) SKM_sk_pop(ASN1_OBJECT, (st)) #define sk_ASN1_OBJECT_sort(st) SKM_sk_sort(ASN1_OBJECT, (st)) #define sk_ASN1_OBJECT_is_sorted(st) SKM_sk_is_sorted(ASN1_OBJECT, (st)) #define sk_ASN1_STRING_TABLE_new(cmp) SKM_sk_new(ASN1_STRING_TABLE, (cmp)) #define sk_ASN1_STRING_TABLE_new_null() SKM_sk_new_null(ASN1_STRING_TABLE) #define sk_ASN1_STRING_TABLE_free(st) SKM_sk_free(ASN1_STRING_TABLE, (st)) #define sk_ASN1_STRING_TABLE_num(st) SKM_sk_num(ASN1_STRING_TABLE, (st)) #define sk_ASN1_STRING_TABLE_value(st,i) SKM_sk_value(ASN1_STRING_TABLE, (st), (i)) #define sk_ASN1_STRING_TABLE_set(st,i,val) SKM_sk_set(ASN1_STRING_TABLE, (st), (i), (val)) #define sk_ASN1_STRING_TABLE_zero(st) SKM_sk_zero(ASN1_STRING_TABLE, (st)) #define sk_ASN1_STRING_TABLE_push(st,val) SKM_sk_push(ASN1_STRING_TABLE, (st), (val)) #define sk_ASN1_STRING_TABLE_unshift(st,val) SKM_sk_unshift(ASN1_STRING_TABLE, (st), (val)) #define sk_ASN1_STRING_TABLE_find(st,val) SKM_sk_find(ASN1_STRING_TABLE, (st), (val)) #define sk_ASN1_STRING_TABLE_find_ex(st,val) SKM_sk_find_ex(ASN1_STRING_TABLE, (st), (val)) #define sk_ASN1_STRING_TABLE_delete(st,i) SKM_sk_delete(ASN1_STRING_TABLE, (st), (i)) #define sk_ASN1_STRING_TABLE_delete_ptr(st,ptr) SKM_sk_delete_ptr(ASN1_STRING_TABLE, (st), (ptr)) #define sk_ASN1_STRING_TABLE_insert(st,val,i) SKM_sk_insert(ASN1_STRING_TABLE, (st), (val), (i)) #define sk_ASN1_STRING_TABLE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ASN1_STRING_TABLE, (st), (cmp)) #define sk_ASN1_STRING_TABLE_dup(st) SKM_sk_dup(ASN1_STRING_TABLE, st) #define sk_ASN1_STRING_TABLE_pop_free(st,free_func) SKM_sk_pop_free(ASN1_STRING_TABLE, (st), (free_func)) #define sk_ASN1_STRING_TABLE_shift(st) SKM_sk_shift(ASN1_STRING_TABLE, (st)) #define sk_ASN1_STRING_TABLE_pop(st) SKM_sk_pop(ASN1_STRING_TABLE, (st)) #define sk_ASN1_STRING_TABLE_sort(st) SKM_sk_sort(ASN1_STRING_TABLE, (st)) #define sk_ASN1_STRING_TABLE_is_sorted(st) SKM_sk_is_sorted(ASN1_STRING_TABLE, (st)) #define sk_ASN1_TYPE_new(cmp) SKM_sk_new(ASN1_TYPE, (cmp)) #define sk_ASN1_TYPE_new_null() SKM_sk_new_null(ASN1_TYPE) #define sk_ASN1_TYPE_free(st) SKM_sk_free(ASN1_TYPE, (st)) #define sk_ASN1_TYPE_num(st) SKM_sk_num(ASN1_TYPE, (st)) #define sk_ASN1_TYPE_value(st,i) SKM_sk_value(ASN1_TYPE, (st), (i)) #define sk_ASN1_TYPE_set(st,i,val) SKM_sk_set(ASN1_TYPE, (st), (i), (val)) #define sk_ASN1_TYPE_zero(st) SKM_sk_zero(ASN1_TYPE, (st)) #define sk_ASN1_TYPE_push(st,val) SKM_sk_push(ASN1_TYPE, (st), (val)) #define sk_ASN1_TYPE_unshift(st,val) SKM_sk_unshift(ASN1_TYPE, (st), (val)) #define sk_ASN1_TYPE_find(st,val) SKM_sk_find(ASN1_TYPE, (st), (val)) #define sk_ASN1_TYPE_find_ex(st,val) SKM_sk_find_ex(ASN1_TYPE, (st), (val)) #define sk_ASN1_TYPE_delete(st,i) SKM_sk_delete(ASN1_TYPE, (st), (i)) #define sk_ASN1_TYPE_delete_ptr(st,ptr) SKM_sk_delete_ptr(ASN1_TYPE, (st), (ptr)) #define sk_ASN1_TYPE_insert(st,val,i) SKM_sk_insert(ASN1_TYPE, (st), (val), (i)) #define sk_ASN1_TYPE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ASN1_TYPE, (st), (cmp)) #define sk_ASN1_TYPE_dup(st) SKM_sk_dup(ASN1_TYPE, st) #define sk_ASN1_TYPE_pop_free(st,free_func) SKM_sk_pop_free(ASN1_TYPE, (st), (free_func)) #define sk_ASN1_TYPE_shift(st) SKM_sk_shift(ASN1_TYPE, (st)) #define sk_ASN1_TYPE_pop(st) SKM_sk_pop(ASN1_TYPE, (st)) #define sk_ASN1_TYPE_sort(st) SKM_sk_sort(ASN1_TYPE, (st)) #define sk_ASN1_TYPE_is_sorted(st) SKM_sk_is_sorted(ASN1_TYPE, (st)) #define sk_ASN1_UTF8STRING_new(cmp) SKM_sk_new(ASN1_UTF8STRING, (cmp)) #define sk_ASN1_UTF8STRING_new_null() SKM_sk_new_null(ASN1_UTF8STRING) #define sk_ASN1_UTF8STRING_free(st) SKM_sk_free(ASN1_UTF8STRING, (st)) #define sk_ASN1_UTF8STRING_num(st) SKM_sk_num(ASN1_UTF8STRING, (st)) #define sk_ASN1_UTF8STRING_value(st,i) SKM_sk_value(ASN1_UTF8STRING, (st), (i)) #define sk_ASN1_UTF8STRING_set(st,i,val) SKM_sk_set(ASN1_UTF8STRING, (st), (i), (val)) #define sk_ASN1_UTF8STRING_zero(st) SKM_sk_zero(ASN1_UTF8STRING, (st)) #define sk_ASN1_UTF8STRING_push(st,val) SKM_sk_push(ASN1_UTF8STRING, (st), (val)) #define sk_ASN1_UTF8STRING_unshift(st,val) SKM_sk_unshift(ASN1_UTF8STRING, (st), (val)) #define sk_ASN1_UTF8STRING_find(st,val) SKM_sk_find(ASN1_UTF8STRING, (st), (val)) #define sk_ASN1_UTF8STRING_find_ex(st,val) SKM_sk_find_ex(ASN1_UTF8STRING, (st), (val)) #define sk_ASN1_UTF8STRING_delete(st,i) SKM_sk_delete(ASN1_UTF8STRING, (st), (i)) #define sk_ASN1_UTF8STRING_delete_ptr(st,ptr) SKM_sk_delete_ptr(ASN1_UTF8STRING, (st), (ptr)) #define sk_ASN1_UTF8STRING_insert(st,val,i) SKM_sk_insert(ASN1_UTF8STRING, (st), (val), (i)) #define sk_ASN1_UTF8STRING_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ASN1_UTF8STRING, (st), (cmp)) #define sk_ASN1_UTF8STRING_dup(st) SKM_sk_dup(ASN1_UTF8STRING, st) #define sk_ASN1_UTF8STRING_pop_free(st,free_func) SKM_sk_pop_free(ASN1_UTF8STRING, (st), (free_func)) #define sk_ASN1_UTF8STRING_shift(st) SKM_sk_shift(ASN1_UTF8STRING, (st)) #define sk_ASN1_UTF8STRING_pop(st) SKM_sk_pop(ASN1_UTF8STRING, (st)) #define sk_ASN1_UTF8STRING_sort(st) SKM_sk_sort(ASN1_UTF8STRING, (st)) #define sk_ASN1_UTF8STRING_is_sorted(st) SKM_sk_is_sorted(ASN1_UTF8STRING, (st)) #define sk_ASN1_VALUE_new(cmp) SKM_sk_new(ASN1_VALUE, (cmp)) #define sk_ASN1_VALUE_new_null() SKM_sk_new_null(ASN1_VALUE) #define sk_ASN1_VALUE_free(st) SKM_sk_free(ASN1_VALUE, (st)) #define sk_ASN1_VALUE_num(st) SKM_sk_num(ASN1_VALUE, (st)) #define sk_ASN1_VALUE_value(st,i) SKM_sk_value(ASN1_VALUE, (st), (i)) #define sk_ASN1_VALUE_set(st,i,val) SKM_sk_set(ASN1_VALUE, (st), (i), (val)) #define sk_ASN1_VALUE_zero(st) SKM_sk_zero(ASN1_VALUE, (st)) #define sk_ASN1_VALUE_push(st,val) SKM_sk_push(ASN1_VALUE, (st), (val)) #define sk_ASN1_VALUE_unshift(st,val) SKM_sk_unshift(ASN1_VALUE, (st), (val)) #define sk_ASN1_VALUE_find(st,val) SKM_sk_find(ASN1_VALUE, (st), (val)) #define sk_ASN1_VALUE_find_ex(st,val) SKM_sk_find_ex(ASN1_VALUE, (st), (val)) #define sk_ASN1_VALUE_delete(st,i) SKM_sk_delete(ASN1_VALUE, (st), (i)) #define sk_ASN1_VALUE_delete_ptr(st,ptr) SKM_sk_delete_ptr(ASN1_VALUE, (st), (ptr)) #define sk_ASN1_VALUE_insert(st,val,i) SKM_sk_insert(ASN1_VALUE, (st), (val), (i)) #define sk_ASN1_VALUE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ASN1_VALUE, (st), (cmp)) #define sk_ASN1_VALUE_dup(st) SKM_sk_dup(ASN1_VALUE, st) #define sk_ASN1_VALUE_pop_free(st,free_func) SKM_sk_pop_free(ASN1_VALUE, (st), (free_func)) #define sk_ASN1_VALUE_shift(st) SKM_sk_shift(ASN1_VALUE, (st)) #define sk_ASN1_VALUE_pop(st) SKM_sk_pop(ASN1_VALUE, (st)) #define sk_ASN1_VALUE_sort(st) SKM_sk_sort(ASN1_VALUE, (st)) #define sk_ASN1_VALUE_is_sorted(st) SKM_sk_is_sorted(ASN1_VALUE, (st)) #define sk_BIO_new(cmp) SKM_sk_new(BIO, (cmp)) #define sk_BIO_new_null() SKM_sk_new_null(BIO) #define sk_BIO_free(st) SKM_sk_free(BIO, (st)) #define sk_BIO_num(st) SKM_sk_num(BIO, (st)) #define sk_BIO_value(st,i) SKM_sk_value(BIO, (st), (i)) #define sk_BIO_set(st,i,val) SKM_sk_set(BIO, (st), (i), (val)) #define sk_BIO_zero(st) SKM_sk_zero(BIO, (st)) #define sk_BIO_push(st,val) SKM_sk_push(BIO, (st), (val)) #define sk_BIO_unshift(st,val) SKM_sk_unshift(BIO, (st), (val)) #define sk_BIO_find(st,val) SKM_sk_find(BIO, (st), (val)) #define sk_BIO_find_ex(st,val) SKM_sk_find_ex(BIO, (st), (val)) #define sk_BIO_delete(st,i) SKM_sk_delete(BIO, (st), (i)) #define sk_BIO_delete_ptr(st,ptr) SKM_sk_delete_ptr(BIO, (st), (ptr)) #define sk_BIO_insert(st,val,i) SKM_sk_insert(BIO, (st), (val), (i)) #define sk_BIO_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(BIO, (st), (cmp)) #define sk_BIO_dup(st) SKM_sk_dup(BIO, st) #define sk_BIO_pop_free(st,free_func) SKM_sk_pop_free(BIO, (st), (free_func)) #define sk_BIO_shift(st) SKM_sk_shift(BIO, (st)) #define sk_BIO_pop(st) SKM_sk_pop(BIO, (st)) #define sk_BIO_sort(st) SKM_sk_sort(BIO, (st)) #define sk_BIO_is_sorted(st) SKM_sk_is_sorted(BIO, (st)) #define sk_BY_DIR_ENTRY_new(cmp) SKM_sk_new(BY_DIR_ENTRY, (cmp)) #define sk_BY_DIR_ENTRY_new_null() SKM_sk_new_null(BY_DIR_ENTRY) #define sk_BY_DIR_ENTRY_free(st) SKM_sk_free(BY_DIR_ENTRY, (st)) #define sk_BY_DIR_ENTRY_num(st) SKM_sk_num(BY_DIR_ENTRY, (st)) #define sk_BY_DIR_ENTRY_value(st,i) SKM_sk_value(BY_DIR_ENTRY, (st), (i)) #define sk_BY_DIR_ENTRY_set(st,i,val) SKM_sk_set(BY_DIR_ENTRY, (st), (i), (val)) #define sk_BY_DIR_ENTRY_zero(st) SKM_sk_zero(BY_DIR_ENTRY, (st)) #define sk_BY_DIR_ENTRY_push(st,val) SKM_sk_push(BY_DIR_ENTRY, (st), (val)) #define sk_BY_DIR_ENTRY_unshift(st,val) SKM_sk_unshift(BY_DIR_ENTRY, (st), (val)) #define sk_BY_DIR_ENTRY_find(st,val) SKM_sk_find(BY_DIR_ENTRY, (st), (val)) #define sk_BY_DIR_ENTRY_find_ex(st,val) SKM_sk_find_ex(BY_DIR_ENTRY, (st), (val)) #define sk_BY_DIR_ENTRY_delete(st,i) SKM_sk_delete(BY_DIR_ENTRY, (st), (i)) #define sk_BY_DIR_ENTRY_delete_ptr(st,ptr) SKM_sk_delete_ptr(BY_DIR_ENTRY, (st), (ptr)) #define sk_BY_DIR_ENTRY_insert(st,val,i) SKM_sk_insert(BY_DIR_ENTRY, (st), (val), (i)) #define sk_BY_DIR_ENTRY_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(BY_DIR_ENTRY, (st), (cmp)) #define sk_BY_DIR_ENTRY_dup(st) SKM_sk_dup(BY_DIR_ENTRY, st) #define sk_BY_DIR_ENTRY_pop_free(st,free_func) SKM_sk_pop_free(BY_DIR_ENTRY, (st), (free_func)) #define sk_BY_DIR_ENTRY_shift(st) SKM_sk_shift(BY_DIR_ENTRY, (st)) #define sk_BY_DIR_ENTRY_pop(st) SKM_sk_pop(BY_DIR_ENTRY, (st)) #define sk_BY_DIR_ENTRY_sort(st) SKM_sk_sort(BY_DIR_ENTRY, (st)) #define sk_BY_DIR_ENTRY_is_sorted(st) SKM_sk_is_sorted(BY_DIR_ENTRY, (st)) #define sk_BY_DIR_HASH_new(cmp) SKM_sk_new(BY_DIR_HASH, (cmp)) #define sk_BY_DIR_HASH_new_null() SKM_sk_new_null(BY_DIR_HASH) #define sk_BY_DIR_HASH_free(st) SKM_sk_free(BY_DIR_HASH, (st)) #define sk_BY_DIR_HASH_num(st) SKM_sk_num(BY_DIR_HASH, (st)) #define sk_BY_DIR_HASH_value(st,i) SKM_sk_value(BY_DIR_HASH, (st), (i)) #define sk_BY_DIR_HASH_set(st,i,val) SKM_sk_set(BY_DIR_HASH, (st), (i), (val)) #define sk_BY_DIR_HASH_zero(st) SKM_sk_zero(BY_DIR_HASH, (st)) #define sk_BY_DIR_HASH_push(st,val) SKM_sk_push(BY_DIR_HASH, (st), (val)) #define sk_BY_DIR_HASH_unshift(st,val) SKM_sk_unshift(BY_DIR_HASH, (st), (val)) #define sk_BY_DIR_HASH_find(st,val) SKM_sk_find(BY_DIR_HASH, (st), (val)) #define sk_BY_DIR_HASH_find_ex(st,val) SKM_sk_find_ex(BY_DIR_HASH, (st), (val)) #define sk_BY_DIR_HASH_delete(st,i) SKM_sk_delete(BY_DIR_HASH, (st), (i)) #define sk_BY_DIR_HASH_delete_ptr(st,ptr) SKM_sk_delete_ptr(BY_DIR_HASH, (st), (ptr)) #define sk_BY_DIR_HASH_insert(st,val,i) SKM_sk_insert(BY_DIR_HASH, (st), (val), (i)) #define sk_BY_DIR_HASH_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(BY_DIR_HASH, (st), (cmp)) #define sk_BY_DIR_HASH_dup(st) SKM_sk_dup(BY_DIR_HASH, st) #define sk_BY_DIR_HASH_pop_free(st,free_func) SKM_sk_pop_free(BY_DIR_HASH, (st), (free_func)) #define sk_BY_DIR_HASH_shift(st) SKM_sk_shift(BY_DIR_HASH, (st)) #define sk_BY_DIR_HASH_pop(st) SKM_sk_pop(BY_DIR_HASH, (st)) #define sk_BY_DIR_HASH_sort(st) SKM_sk_sort(BY_DIR_HASH, (st)) #define sk_BY_DIR_HASH_is_sorted(st) SKM_sk_is_sorted(BY_DIR_HASH, (st)) #define sk_CMS_CertificateChoices_new(cmp) SKM_sk_new(CMS_CertificateChoices, (cmp)) #define sk_CMS_CertificateChoices_new_null() SKM_sk_new_null(CMS_CertificateChoices) #define sk_CMS_CertificateChoices_free(st) SKM_sk_free(CMS_CertificateChoices, (st)) #define sk_CMS_CertificateChoices_num(st) SKM_sk_num(CMS_CertificateChoices, (st)) #define sk_CMS_CertificateChoices_value(st,i) SKM_sk_value(CMS_CertificateChoices, (st), (i)) #define sk_CMS_CertificateChoices_set(st,i,val) SKM_sk_set(CMS_CertificateChoices, (st), (i), (val)) #define sk_CMS_CertificateChoices_zero(st) SKM_sk_zero(CMS_CertificateChoices, (st)) #define sk_CMS_CertificateChoices_push(st,val) SKM_sk_push(CMS_CertificateChoices, (st), (val)) #define sk_CMS_CertificateChoices_unshift(st,val) SKM_sk_unshift(CMS_CertificateChoices, (st), (val)) #define sk_CMS_CertificateChoices_find(st,val) SKM_sk_find(CMS_CertificateChoices, (st), (val)) #define sk_CMS_CertificateChoices_find_ex(st,val) SKM_sk_find_ex(CMS_CertificateChoices, (st), (val)) #define sk_CMS_CertificateChoices_delete(st,i) SKM_sk_delete(CMS_CertificateChoices, (st), (i)) #define sk_CMS_CertificateChoices_delete_ptr(st,ptr) SKM_sk_delete_ptr(CMS_CertificateChoices, (st), (ptr)) #define sk_CMS_CertificateChoices_insert(st,val,i) SKM_sk_insert(CMS_CertificateChoices, (st), (val), (i)) #define sk_CMS_CertificateChoices_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CMS_CertificateChoices, (st), (cmp)) #define sk_CMS_CertificateChoices_dup(st) SKM_sk_dup(CMS_CertificateChoices, st) #define sk_CMS_CertificateChoices_pop_free(st,free_func) SKM_sk_pop_free(CMS_CertificateChoices, (st), (free_func)) #define sk_CMS_CertificateChoices_shift(st) SKM_sk_shift(CMS_CertificateChoices, (st)) #define sk_CMS_CertificateChoices_pop(st) SKM_sk_pop(CMS_CertificateChoices, (st)) #define sk_CMS_CertificateChoices_sort(st) SKM_sk_sort(CMS_CertificateChoices, (st)) #define sk_CMS_CertificateChoices_is_sorted(st) SKM_sk_is_sorted(CMS_CertificateChoices, (st)) #define sk_CMS_RecipientInfo_new(cmp) SKM_sk_new(CMS_RecipientInfo, (cmp)) #define sk_CMS_RecipientInfo_new_null() SKM_sk_new_null(CMS_RecipientInfo) #define sk_CMS_RecipientInfo_free(st) SKM_sk_free(CMS_RecipientInfo, (st)) #define sk_CMS_RecipientInfo_num(st) SKM_sk_num(CMS_RecipientInfo, (st)) #define sk_CMS_RecipientInfo_value(st,i) SKM_sk_value(CMS_RecipientInfo, (st), (i)) #define sk_CMS_RecipientInfo_set(st,i,val) SKM_sk_set(CMS_RecipientInfo, (st), (i), (val)) #define sk_CMS_RecipientInfo_zero(st) SKM_sk_zero(CMS_RecipientInfo, (st)) #define sk_CMS_RecipientInfo_push(st,val) SKM_sk_push(CMS_RecipientInfo, (st), (val)) #define sk_CMS_RecipientInfo_unshift(st,val) SKM_sk_unshift(CMS_RecipientInfo, (st), (val)) #define sk_CMS_RecipientInfo_find(st,val) SKM_sk_find(CMS_RecipientInfo, (st), (val)) #define sk_CMS_RecipientInfo_find_ex(st,val) SKM_sk_find_ex(CMS_RecipientInfo, (st), (val)) #define sk_CMS_RecipientInfo_delete(st,i) SKM_sk_delete(CMS_RecipientInfo, (st), (i)) #define sk_CMS_RecipientInfo_delete_ptr(st,ptr) SKM_sk_delete_ptr(CMS_RecipientInfo, (st), (ptr)) #define sk_CMS_RecipientInfo_insert(st,val,i) SKM_sk_insert(CMS_RecipientInfo, (st), (val), (i)) #define sk_CMS_RecipientInfo_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CMS_RecipientInfo, (st), (cmp)) #define sk_CMS_RecipientInfo_dup(st) SKM_sk_dup(CMS_RecipientInfo, st) #define sk_CMS_RecipientInfo_pop_free(st,free_func) SKM_sk_pop_free(CMS_RecipientInfo, (st), (free_func)) #define sk_CMS_RecipientInfo_shift(st) SKM_sk_shift(CMS_RecipientInfo, (st)) #define sk_CMS_RecipientInfo_pop(st) SKM_sk_pop(CMS_RecipientInfo, (st)) #define sk_CMS_RecipientInfo_sort(st) SKM_sk_sort(CMS_RecipientInfo, (st)) #define sk_CMS_RecipientInfo_is_sorted(st) SKM_sk_is_sorted(CMS_RecipientInfo, (st)) #define sk_CMS_RevocationInfoChoice_new(cmp) SKM_sk_new(CMS_RevocationInfoChoice, (cmp)) #define sk_CMS_RevocationInfoChoice_new_null() SKM_sk_new_null(CMS_RevocationInfoChoice) #define sk_CMS_RevocationInfoChoice_free(st) SKM_sk_free(CMS_RevocationInfoChoice, (st)) #define sk_CMS_RevocationInfoChoice_num(st) SKM_sk_num(CMS_RevocationInfoChoice, (st)) #define sk_CMS_RevocationInfoChoice_value(st,i) SKM_sk_value(CMS_RevocationInfoChoice, (st), (i)) #define sk_CMS_RevocationInfoChoice_set(st,i,val) SKM_sk_set(CMS_RevocationInfoChoice, (st), (i), (val)) #define sk_CMS_RevocationInfoChoice_zero(st) SKM_sk_zero(CMS_RevocationInfoChoice, (st)) #define sk_CMS_RevocationInfoChoice_push(st,val) SKM_sk_push(CMS_RevocationInfoChoice, (st), (val)) #define sk_CMS_RevocationInfoChoice_unshift(st,val) SKM_sk_unshift(CMS_RevocationInfoChoice, (st), (val)) #define sk_CMS_RevocationInfoChoice_find(st,val) SKM_sk_find(CMS_RevocationInfoChoice, (st), (val)) #define sk_CMS_RevocationInfoChoice_find_ex(st,val) SKM_sk_find_ex(CMS_RevocationInfoChoice, (st), (val)) #define sk_CMS_RevocationInfoChoice_delete(st,i) SKM_sk_delete(CMS_RevocationInfoChoice, (st), (i)) #define sk_CMS_RevocationInfoChoice_delete_ptr(st,ptr) SKM_sk_delete_ptr(CMS_RevocationInfoChoice, (st), (ptr)) #define sk_CMS_RevocationInfoChoice_insert(st,val,i) SKM_sk_insert(CMS_RevocationInfoChoice, (st), (val), (i)) #define sk_CMS_RevocationInfoChoice_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CMS_RevocationInfoChoice, (st), (cmp)) #define sk_CMS_RevocationInfoChoice_dup(st) SKM_sk_dup(CMS_RevocationInfoChoice, st) #define sk_CMS_RevocationInfoChoice_pop_free(st,free_func) SKM_sk_pop_free(CMS_RevocationInfoChoice, (st), (free_func)) #define sk_CMS_RevocationInfoChoice_shift(st) SKM_sk_shift(CMS_RevocationInfoChoice, (st)) #define sk_CMS_RevocationInfoChoice_pop(st) SKM_sk_pop(CMS_RevocationInfoChoice, (st)) #define sk_CMS_RevocationInfoChoice_sort(st) SKM_sk_sort(CMS_RevocationInfoChoice, (st)) #define sk_CMS_RevocationInfoChoice_is_sorted(st) SKM_sk_is_sorted(CMS_RevocationInfoChoice, (st)) #define sk_CMS_SignerInfo_new(cmp) SKM_sk_new(CMS_SignerInfo, (cmp)) #define sk_CMS_SignerInfo_new_null() SKM_sk_new_null(CMS_SignerInfo) #define sk_CMS_SignerInfo_free(st) SKM_sk_free(CMS_SignerInfo, (st)) #define sk_CMS_SignerInfo_num(st) SKM_sk_num(CMS_SignerInfo, (st)) #define sk_CMS_SignerInfo_value(st,i) SKM_sk_value(CMS_SignerInfo, (st), (i)) #define sk_CMS_SignerInfo_set(st,i,val) SKM_sk_set(CMS_SignerInfo, (st), (i), (val)) #define sk_CMS_SignerInfo_zero(st) SKM_sk_zero(CMS_SignerInfo, (st)) #define sk_CMS_SignerInfo_push(st,val) SKM_sk_push(CMS_SignerInfo, (st), (val)) #define sk_CMS_SignerInfo_unshift(st,val) SKM_sk_unshift(CMS_SignerInfo, (st), (val)) #define sk_CMS_SignerInfo_find(st,val) SKM_sk_find(CMS_SignerInfo, (st), (val)) #define sk_CMS_SignerInfo_find_ex(st,val) SKM_sk_find_ex(CMS_SignerInfo, (st), (val)) #define sk_CMS_SignerInfo_delete(st,i) SKM_sk_delete(CMS_SignerInfo, (st), (i)) #define sk_CMS_SignerInfo_delete_ptr(st,ptr) SKM_sk_delete_ptr(CMS_SignerInfo, (st), (ptr)) #define sk_CMS_SignerInfo_insert(st,val,i) SKM_sk_insert(CMS_SignerInfo, (st), (val), (i)) #define sk_CMS_SignerInfo_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CMS_SignerInfo, (st), (cmp)) #define sk_CMS_SignerInfo_dup(st) SKM_sk_dup(CMS_SignerInfo, st) #define sk_CMS_SignerInfo_pop_free(st,free_func) SKM_sk_pop_free(CMS_SignerInfo, (st), (free_func)) #define sk_CMS_SignerInfo_shift(st) SKM_sk_shift(CMS_SignerInfo, (st)) #define sk_CMS_SignerInfo_pop(st) SKM_sk_pop(CMS_SignerInfo, (st)) #define sk_CMS_SignerInfo_sort(st) SKM_sk_sort(CMS_SignerInfo, (st)) #define sk_CMS_SignerInfo_is_sorted(st) SKM_sk_is_sorted(CMS_SignerInfo, (st)) #define sk_CONF_IMODULE_new(cmp) SKM_sk_new(CONF_IMODULE, (cmp)) #define sk_CONF_IMODULE_new_null() SKM_sk_new_null(CONF_IMODULE) #define sk_CONF_IMODULE_free(st) SKM_sk_free(CONF_IMODULE, (st)) #define sk_CONF_IMODULE_num(st) SKM_sk_num(CONF_IMODULE, (st)) #define sk_CONF_IMODULE_value(st,i) SKM_sk_value(CONF_IMODULE, (st), (i)) #define sk_CONF_IMODULE_set(st,i,val) SKM_sk_set(CONF_IMODULE, (st), (i), (val)) #define sk_CONF_IMODULE_zero(st) SKM_sk_zero(CONF_IMODULE, (st)) #define sk_CONF_IMODULE_push(st,val) SKM_sk_push(CONF_IMODULE, (st), (val)) #define sk_CONF_IMODULE_unshift(st,val) SKM_sk_unshift(CONF_IMODULE, (st), (val)) #define sk_CONF_IMODULE_find(st,val) SKM_sk_find(CONF_IMODULE, (st), (val)) #define sk_CONF_IMODULE_find_ex(st,val) SKM_sk_find_ex(CONF_IMODULE, (st), (val)) #define sk_CONF_IMODULE_delete(st,i) SKM_sk_delete(CONF_IMODULE, (st), (i)) #define sk_CONF_IMODULE_delete_ptr(st,ptr) SKM_sk_delete_ptr(CONF_IMODULE, (st), (ptr)) #define sk_CONF_IMODULE_insert(st,val,i) SKM_sk_insert(CONF_IMODULE, (st), (val), (i)) #define sk_CONF_IMODULE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CONF_IMODULE, (st), (cmp)) #define sk_CONF_IMODULE_dup(st) SKM_sk_dup(CONF_IMODULE, st) #define sk_CONF_IMODULE_pop_free(st,free_func) SKM_sk_pop_free(CONF_IMODULE, (st), (free_func)) #define sk_CONF_IMODULE_shift(st) SKM_sk_shift(CONF_IMODULE, (st)) #define sk_CONF_IMODULE_pop(st) SKM_sk_pop(CONF_IMODULE, (st)) #define sk_CONF_IMODULE_sort(st) SKM_sk_sort(CONF_IMODULE, (st)) #define sk_CONF_IMODULE_is_sorted(st) SKM_sk_is_sorted(CONF_IMODULE, (st)) #define sk_CONF_MODULE_new(cmp) SKM_sk_new(CONF_MODULE, (cmp)) #define sk_CONF_MODULE_new_null() SKM_sk_new_null(CONF_MODULE) #define sk_CONF_MODULE_free(st) SKM_sk_free(CONF_MODULE, (st)) #define sk_CONF_MODULE_num(st) SKM_sk_num(CONF_MODULE, (st)) #define sk_CONF_MODULE_value(st,i) SKM_sk_value(CONF_MODULE, (st), (i)) #define sk_CONF_MODULE_set(st,i,val) SKM_sk_set(CONF_MODULE, (st), (i), (val)) #define sk_CONF_MODULE_zero(st) SKM_sk_zero(CONF_MODULE, (st)) #define sk_CONF_MODULE_push(st,val) SKM_sk_push(CONF_MODULE, (st), (val)) #define sk_CONF_MODULE_unshift(st,val) SKM_sk_unshift(CONF_MODULE, (st), (val)) #define sk_CONF_MODULE_find(st,val) SKM_sk_find(CONF_MODULE, (st), (val)) #define sk_CONF_MODULE_find_ex(st,val) SKM_sk_find_ex(CONF_MODULE, (st), (val)) #define sk_CONF_MODULE_delete(st,i) SKM_sk_delete(CONF_MODULE, (st), (i)) #define sk_CONF_MODULE_delete_ptr(st,ptr) SKM_sk_delete_ptr(CONF_MODULE, (st), (ptr)) #define sk_CONF_MODULE_insert(st,val,i) SKM_sk_insert(CONF_MODULE, (st), (val), (i)) #define sk_CONF_MODULE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CONF_MODULE, (st), (cmp)) #define sk_CONF_MODULE_dup(st) SKM_sk_dup(CONF_MODULE, st) #define sk_CONF_MODULE_pop_free(st,free_func) SKM_sk_pop_free(CONF_MODULE, (st), (free_func)) #define sk_CONF_MODULE_shift(st) SKM_sk_shift(CONF_MODULE, (st)) #define sk_CONF_MODULE_pop(st) SKM_sk_pop(CONF_MODULE, (st)) #define sk_CONF_MODULE_sort(st) SKM_sk_sort(CONF_MODULE, (st)) #define sk_CONF_MODULE_is_sorted(st) SKM_sk_is_sorted(CONF_MODULE, (st)) #define sk_CONF_VALUE_new(cmp) SKM_sk_new(CONF_VALUE, (cmp)) #define sk_CONF_VALUE_new_null() SKM_sk_new_null(CONF_VALUE) #define sk_CONF_VALUE_free(st) SKM_sk_free(CONF_VALUE, (st)) #define sk_CONF_VALUE_num(st) SKM_sk_num(CONF_VALUE, (st)) #define sk_CONF_VALUE_value(st,i) SKM_sk_value(CONF_VALUE, (st), (i)) #define sk_CONF_VALUE_set(st,i,val) SKM_sk_set(CONF_VALUE, (st), (i), (val)) #define sk_CONF_VALUE_zero(st) SKM_sk_zero(CONF_VALUE, (st)) #define sk_CONF_VALUE_push(st,val) SKM_sk_push(CONF_VALUE, (st), (val)) #define sk_CONF_VALUE_unshift(st,val) SKM_sk_unshift(CONF_VALUE, (st), (val)) #define sk_CONF_VALUE_find(st,val) SKM_sk_find(CONF_VALUE, (st), (val)) #define sk_CONF_VALUE_find_ex(st,val) SKM_sk_find_ex(CONF_VALUE, (st), (val)) #define sk_CONF_VALUE_delete(st,i) SKM_sk_delete(CONF_VALUE, (st), (i)) #define sk_CONF_VALUE_delete_ptr(st,ptr) SKM_sk_delete_ptr(CONF_VALUE, (st), (ptr)) #define sk_CONF_VALUE_insert(st,val,i) SKM_sk_insert(CONF_VALUE, (st), (val), (i)) #define sk_CONF_VALUE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CONF_VALUE, (st), (cmp)) #define sk_CONF_VALUE_dup(st) SKM_sk_dup(CONF_VALUE, st) #define sk_CONF_VALUE_pop_free(st,free_func) SKM_sk_pop_free(CONF_VALUE, (st), (free_func)) #define sk_CONF_VALUE_shift(st) SKM_sk_shift(CONF_VALUE, (st)) #define sk_CONF_VALUE_pop(st) SKM_sk_pop(CONF_VALUE, (st)) #define sk_CONF_VALUE_sort(st) SKM_sk_sort(CONF_VALUE, (st)) #define sk_CONF_VALUE_is_sorted(st) SKM_sk_is_sorted(CONF_VALUE, (st)) #define sk_CRYPTO_EX_DATA_FUNCS_new(cmp) SKM_sk_new(CRYPTO_EX_DATA_FUNCS, (cmp)) #define sk_CRYPTO_EX_DATA_FUNCS_new_null() SKM_sk_new_null(CRYPTO_EX_DATA_FUNCS) #define sk_CRYPTO_EX_DATA_FUNCS_free(st) SKM_sk_free(CRYPTO_EX_DATA_FUNCS, (st)) #define sk_CRYPTO_EX_DATA_FUNCS_num(st) SKM_sk_num(CRYPTO_EX_DATA_FUNCS, (st)) #define sk_CRYPTO_EX_DATA_FUNCS_value(st,i) SKM_sk_value(CRYPTO_EX_DATA_FUNCS, (st), (i)) #define sk_CRYPTO_EX_DATA_FUNCS_set(st,i,val) SKM_sk_set(CRYPTO_EX_DATA_FUNCS, (st), (i), (val)) #define sk_CRYPTO_EX_DATA_FUNCS_zero(st) SKM_sk_zero(CRYPTO_EX_DATA_FUNCS, (st)) #define sk_CRYPTO_EX_DATA_FUNCS_push(st,val) SKM_sk_push(CRYPTO_EX_DATA_FUNCS, (st), (val)) #define sk_CRYPTO_EX_DATA_FUNCS_unshift(st,val) SKM_sk_unshift(CRYPTO_EX_DATA_FUNCS, (st), (val)) #define sk_CRYPTO_EX_DATA_FUNCS_find(st,val) SKM_sk_find(CRYPTO_EX_DATA_FUNCS, (st), (val)) #define sk_CRYPTO_EX_DATA_FUNCS_find_ex(st,val) SKM_sk_find_ex(CRYPTO_EX_DATA_FUNCS, (st), (val)) #define sk_CRYPTO_EX_DATA_FUNCS_delete(st,i) SKM_sk_delete(CRYPTO_EX_DATA_FUNCS, (st), (i)) #define sk_CRYPTO_EX_DATA_FUNCS_delete_ptr(st,ptr) SKM_sk_delete_ptr(CRYPTO_EX_DATA_FUNCS, (st), (ptr)) #define sk_CRYPTO_EX_DATA_FUNCS_insert(st,val,i) SKM_sk_insert(CRYPTO_EX_DATA_FUNCS, (st), (val), (i)) #define sk_CRYPTO_EX_DATA_FUNCS_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CRYPTO_EX_DATA_FUNCS, (st), (cmp)) #define sk_CRYPTO_EX_DATA_FUNCS_dup(st) SKM_sk_dup(CRYPTO_EX_DATA_FUNCS, st) #define sk_CRYPTO_EX_DATA_FUNCS_pop_free(st,free_func) SKM_sk_pop_free(CRYPTO_EX_DATA_FUNCS, (st), (free_func)) #define sk_CRYPTO_EX_DATA_FUNCS_shift(st) SKM_sk_shift(CRYPTO_EX_DATA_FUNCS, (st)) #define sk_CRYPTO_EX_DATA_FUNCS_pop(st) SKM_sk_pop(CRYPTO_EX_DATA_FUNCS, (st)) #define sk_CRYPTO_EX_DATA_FUNCS_sort(st) SKM_sk_sort(CRYPTO_EX_DATA_FUNCS, (st)) #define sk_CRYPTO_EX_DATA_FUNCS_is_sorted(st) SKM_sk_is_sorted(CRYPTO_EX_DATA_FUNCS, (st)) #define sk_CRYPTO_dynlock_new(cmp) SKM_sk_new(CRYPTO_dynlock, (cmp)) #define sk_CRYPTO_dynlock_new_null() SKM_sk_new_null(CRYPTO_dynlock) #define sk_CRYPTO_dynlock_free(st) SKM_sk_free(CRYPTO_dynlock, (st)) #define sk_CRYPTO_dynlock_num(st) SKM_sk_num(CRYPTO_dynlock, (st)) #define sk_CRYPTO_dynlock_value(st,i) SKM_sk_value(CRYPTO_dynlock, (st), (i)) #define sk_CRYPTO_dynlock_set(st,i,val) SKM_sk_set(CRYPTO_dynlock, (st), (i), (val)) #define sk_CRYPTO_dynlock_zero(st) SKM_sk_zero(CRYPTO_dynlock, (st)) #define sk_CRYPTO_dynlock_push(st,val) SKM_sk_push(CRYPTO_dynlock, (st), (val)) #define sk_CRYPTO_dynlock_unshift(st,val) SKM_sk_unshift(CRYPTO_dynlock, (st), (val)) #define sk_CRYPTO_dynlock_find(st,val) SKM_sk_find(CRYPTO_dynlock, (st), (val)) #define sk_CRYPTO_dynlock_find_ex(st,val) SKM_sk_find_ex(CRYPTO_dynlock, (st), (val)) #define sk_CRYPTO_dynlock_delete(st,i) SKM_sk_delete(CRYPTO_dynlock, (st), (i)) #define sk_CRYPTO_dynlock_delete_ptr(st,ptr) SKM_sk_delete_ptr(CRYPTO_dynlock, (st), (ptr)) #define sk_CRYPTO_dynlock_insert(st,val,i) SKM_sk_insert(CRYPTO_dynlock, (st), (val), (i)) #define sk_CRYPTO_dynlock_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(CRYPTO_dynlock, (st), (cmp)) #define sk_CRYPTO_dynlock_dup(st) SKM_sk_dup(CRYPTO_dynlock, st) #define sk_CRYPTO_dynlock_pop_free(st,free_func) SKM_sk_pop_free(CRYPTO_dynlock, (st), (free_func)) #define sk_CRYPTO_dynlock_shift(st) SKM_sk_shift(CRYPTO_dynlock, (st)) #define sk_CRYPTO_dynlock_pop(st) SKM_sk_pop(CRYPTO_dynlock, (st)) #define sk_CRYPTO_dynlock_sort(st) SKM_sk_sort(CRYPTO_dynlock, (st)) #define sk_CRYPTO_dynlock_is_sorted(st) SKM_sk_is_sorted(CRYPTO_dynlock, (st)) #define sk_DIST_POINT_new(cmp) SKM_sk_new(DIST_POINT, (cmp)) #define sk_DIST_POINT_new_null() SKM_sk_new_null(DIST_POINT) #define sk_DIST_POINT_free(st) SKM_sk_free(DIST_POINT, (st)) #define sk_DIST_POINT_num(st) SKM_sk_num(DIST_POINT, (st)) #define sk_DIST_POINT_value(st,i) SKM_sk_value(DIST_POINT, (st), (i)) #define sk_DIST_POINT_set(st,i,val) SKM_sk_set(DIST_POINT, (st), (i), (val)) #define sk_DIST_POINT_zero(st) SKM_sk_zero(DIST_POINT, (st)) #define sk_DIST_POINT_push(st,val) SKM_sk_push(DIST_POINT, (st), (val)) #define sk_DIST_POINT_unshift(st,val) SKM_sk_unshift(DIST_POINT, (st), (val)) #define sk_DIST_POINT_find(st,val) SKM_sk_find(DIST_POINT, (st), (val)) #define sk_DIST_POINT_find_ex(st,val) SKM_sk_find_ex(DIST_POINT, (st), (val)) #define sk_DIST_POINT_delete(st,i) SKM_sk_delete(DIST_POINT, (st), (i)) #define sk_DIST_POINT_delete_ptr(st,ptr) SKM_sk_delete_ptr(DIST_POINT, (st), (ptr)) #define sk_DIST_POINT_insert(st,val,i) SKM_sk_insert(DIST_POINT, (st), (val), (i)) #define sk_DIST_POINT_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(DIST_POINT, (st), (cmp)) #define sk_DIST_POINT_dup(st) SKM_sk_dup(DIST_POINT, st) #define sk_DIST_POINT_pop_free(st,free_func) SKM_sk_pop_free(DIST_POINT, (st), (free_func)) #define sk_DIST_POINT_shift(st) SKM_sk_shift(DIST_POINT, (st)) #define sk_DIST_POINT_pop(st) SKM_sk_pop(DIST_POINT, (st)) #define sk_DIST_POINT_sort(st) SKM_sk_sort(DIST_POINT, (st)) #define sk_DIST_POINT_is_sorted(st) SKM_sk_is_sorted(DIST_POINT, (st)) #define sk_ENGINE_new(cmp) SKM_sk_new(ENGINE, (cmp)) #define sk_ENGINE_new_null() SKM_sk_new_null(ENGINE) #define sk_ENGINE_free(st) SKM_sk_free(ENGINE, (st)) #define sk_ENGINE_num(st) SKM_sk_num(ENGINE, (st)) #define sk_ENGINE_value(st,i) SKM_sk_value(ENGINE, (st), (i)) #define sk_ENGINE_set(st,i,val) SKM_sk_set(ENGINE, (st), (i), (val)) #define sk_ENGINE_zero(st) SKM_sk_zero(ENGINE, (st)) #define sk_ENGINE_push(st,val) SKM_sk_push(ENGINE, (st), (val)) #define sk_ENGINE_unshift(st,val) SKM_sk_unshift(ENGINE, (st), (val)) #define sk_ENGINE_find(st,val) SKM_sk_find(ENGINE, (st), (val)) #define sk_ENGINE_find_ex(st,val) SKM_sk_find_ex(ENGINE, (st), (val)) #define sk_ENGINE_delete(st,i) SKM_sk_delete(ENGINE, (st), (i)) #define sk_ENGINE_delete_ptr(st,ptr) SKM_sk_delete_ptr(ENGINE, (st), (ptr)) #define sk_ENGINE_insert(st,val,i) SKM_sk_insert(ENGINE, (st), (val), (i)) #define sk_ENGINE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ENGINE, (st), (cmp)) #define sk_ENGINE_dup(st) SKM_sk_dup(ENGINE, st) #define sk_ENGINE_pop_free(st,free_func) SKM_sk_pop_free(ENGINE, (st), (free_func)) #define sk_ENGINE_shift(st) SKM_sk_shift(ENGINE, (st)) #define sk_ENGINE_pop(st) SKM_sk_pop(ENGINE, (st)) #define sk_ENGINE_sort(st) SKM_sk_sort(ENGINE, (st)) #define sk_ENGINE_is_sorted(st) SKM_sk_is_sorted(ENGINE, (st)) #define sk_ENGINE_CLEANUP_ITEM_new(cmp) SKM_sk_new(ENGINE_CLEANUP_ITEM, (cmp)) #define sk_ENGINE_CLEANUP_ITEM_new_null() SKM_sk_new_null(ENGINE_CLEANUP_ITEM) #define sk_ENGINE_CLEANUP_ITEM_free(st) SKM_sk_free(ENGINE_CLEANUP_ITEM, (st)) #define sk_ENGINE_CLEANUP_ITEM_num(st) SKM_sk_num(ENGINE_CLEANUP_ITEM, (st)) #define sk_ENGINE_CLEANUP_ITEM_value(st,i) SKM_sk_value(ENGINE_CLEANUP_ITEM, (st), (i)) #define sk_ENGINE_CLEANUP_ITEM_set(st,i,val) SKM_sk_set(ENGINE_CLEANUP_ITEM, (st), (i), (val)) #define sk_ENGINE_CLEANUP_ITEM_zero(st) SKM_sk_zero(ENGINE_CLEANUP_ITEM, (st)) #define sk_ENGINE_CLEANUP_ITEM_push(st,val) SKM_sk_push(ENGINE_CLEANUP_ITEM, (st), (val)) #define sk_ENGINE_CLEANUP_ITEM_unshift(st,val) SKM_sk_unshift(ENGINE_CLEANUP_ITEM, (st), (val)) #define sk_ENGINE_CLEANUP_ITEM_find(st,val) SKM_sk_find(ENGINE_CLEANUP_ITEM, (st), (val)) #define sk_ENGINE_CLEANUP_ITEM_find_ex(st,val) SKM_sk_find_ex(ENGINE_CLEANUP_ITEM, (st), (val)) #define sk_ENGINE_CLEANUP_ITEM_delete(st,i) SKM_sk_delete(ENGINE_CLEANUP_ITEM, (st), (i)) #define sk_ENGINE_CLEANUP_ITEM_delete_ptr(st,ptr) SKM_sk_delete_ptr(ENGINE_CLEANUP_ITEM, (st), (ptr)) #define sk_ENGINE_CLEANUP_ITEM_insert(st,val,i) SKM_sk_insert(ENGINE_CLEANUP_ITEM, (st), (val), (i)) #define sk_ENGINE_CLEANUP_ITEM_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ENGINE_CLEANUP_ITEM, (st), (cmp)) #define sk_ENGINE_CLEANUP_ITEM_dup(st) SKM_sk_dup(ENGINE_CLEANUP_ITEM, st) #define sk_ENGINE_CLEANUP_ITEM_pop_free(st,free_func) SKM_sk_pop_free(ENGINE_CLEANUP_ITEM, (st), (free_func)) #define sk_ENGINE_CLEANUP_ITEM_shift(st) SKM_sk_shift(ENGINE_CLEANUP_ITEM, (st)) #define sk_ENGINE_CLEANUP_ITEM_pop(st) SKM_sk_pop(ENGINE_CLEANUP_ITEM, (st)) #define sk_ENGINE_CLEANUP_ITEM_sort(st) SKM_sk_sort(ENGINE_CLEANUP_ITEM, (st)) #define sk_ENGINE_CLEANUP_ITEM_is_sorted(st) SKM_sk_is_sorted(ENGINE_CLEANUP_ITEM, (st)) #define sk_ESS_CERT_ID_new(cmp) SKM_sk_new(ESS_CERT_ID, (cmp)) #define sk_ESS_CERT_ID_new_null() SKM_sk_new_null(ESS_CERT_ID) #define sk_ESS_CERT_ID_free(st) SKM_sk_free(ESS_CERT_ID, (st)) #define sk_ESS_CERT_ID_num(st) SKM_sk_num(ESS_CERT_ID, (st)) #define sk_ESS_CERT_ID_value(st,i) SKM_sk_value(ESS_CERT_ID, (st), (i)) #define sk_ESS_CERT_ID_set(st,i,val) SKM_sk_set(ESS_CERT_ID, (st), (i), (val)) #define sk_ESS_CERT_ID_zero(st) SKM_sk_zero(ESS_CERT_ID, (st)) #define sk_ESS_CERT_ID_push(st,val) SKM_sk_push(ESS_CERT_ID, (st), (val)) #define sk_ESS_CERT_ID_unshift(st,val) SKM_sk_unshift(ESS_CERT_ID, (st), (val)) #define sk_ESS_CERT_ID_find(st,val) SKM_sk_find(ESS_CERT_ID, (st), (val)) #define sk_ESS_CERT_ID_find_ex(st,val) SKM_sk_find_ex(ESS_CERT_ID, (st), (val)) #define sk_ESS_CERT_ID_delete(st,i) SKM_sk_delete(ESS_CERT_ID, (st), (i)) #define sk_ESS_CERT_ID_delete_ptr(st,ptr) SKM_sk_delete_ptr(ESS_CERT_ID, (st), (ptr)) #define sk_ESS_CERT_ID_insert(st,val,i) SKM_sk_insert(ESS_CERT_ID, (st), (val), (i)) #define sk_ESS_CERT_ID_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(ESS_CERT_ID, (st), (cmp)) #define sk_ESS_CERT_ID_dup(st) SKM_sk_dup(ESS_CERT_ID, st) #define sk_ESS_CERT_ID_pop_free(st,free_func) SKM_sk_pop_free(ESS_CERT_ID, (st), (free_func)) #define sk_ESS_CERT_ID_shift(st) SKM_sk_shift(ESS_CERT_ID, (st)) #define sk_ESS_CERT_ID_pop(st) SKM_sk_pop(ESS_CERT_ID, (st)) #define sk_ESS_CERT_ID_sort(st) SKM_sk_sort(ESS_CERT_ID, (st)) #define sk_ESS_CERT_ID_is_sorted(st) SKM_sk_is_sorted(ESS_CERT_ID, (st)) #define sk_EVP_MD_new(cmp) SKM_sk_new(EVP_MD, (cmp)) #define sk_EVP_MD_new_null() SKM_sk_new_null(EVP_MD) #define sk_EVP_MD_free(st) SKM_sk_free(EVP_MD, (st)) #define sk_EVP_MD_num(st) SKM_sk_num(EVP_MD, (st)) #define sk_EVP_MD_value(st,i) SKM_sk_value(EVP_MD, (st), (i)) #define sk_EVP_MD_set(st,i,val) SKM_sk_set(EVP_MD, (st), (i), (val)) #define sk_EVP_MD_zero(st) SKM_sk_zero(EVP_MD, (st)) #define sk_EVP_MD_push(st,val) SKM_sk_push(EVP_MD, (st), (val)) #define sk_EVP_MD_unshift(st,val) SKM_sk_unshift(EVP_MD, (st), (val)) #define sk_EVP_MD_find(st,val) SKM_sk_find(EVP_MD, (st), (val)) #define sk_EVP_MD_find_ex(st,val) SKM_sk_find_ex(EVP_MD, (st), (val)) #define sk_EVP_MD_delete(st,i) SKM_sk_delete(EVP_MD, (st), (i)) #define sk_EVP_MD_delete_ptr(st,ptr) SKM_sk_delete_ptr(EVP_MD, (st), (ptr)) #define sk_EVP_MD_insert(st,val,i) SKM_sk_insert(EVP_MD, (st), (val), (i)) #define sk_EVP_MD_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(EVP_MD, (st), (cmp)) #define sk_EVP_MD_dup(st) SKM_sk_dup(EVP_MD, st) #define sk_EVP_MD_pop_free(st,free_func) SKM_sk_pop_free(EVP_MD, (st), (free_func)) #define sk_EVP_MD_shift(st) SKM_sk_shift(EVP_MD, (st)) #define sk_EVP_MD_pop(st) SKM_sk_pop(EVP_MD, (st)) #define sk_EVP_MD_sort(st) SKM_sk_sort(EVP_MD, (st)) #define sk_EVP_MD_is_sorted(st) SKM_sk_is_sorted(EVP_MD, (st)) #define sk_EVP_PBE_CTL_new(cmp) SKM_sk_new(EVP_PBE_CTL, (cmp)) #define sk_EVP_PBE_CTL_new_null() SKM_sk_new_null(EVP_PBE_CTL) #define sk_EVP_PBE_CTL_free(st) SKM_sk_free(EVP_PBE_CTL, (st)) #define sk_EVP_PBE_CTL_num(st) SKM_sk_num(EVP_PBE_CTL, (st)) #define sk_EVP_PBE_CTL_value(st,i) SKM_sk_value(EVP_PBE_CTL, (st), (i)) #define sk_EVP_PBE_CTL_set(st,i,val) SKM_sk_set(EVP_PBE_CTL, (st), (i), (val)) #define sk_EVP_PBE_CTL_zero(st) SKM_sk_zero(EVP_PBE_CTL, (st)) #define sk_EVP_PBE_CTL_push(st,val) SKM_sk_push(EVP_PBE_CTL, (st), (val)) #define sk_EVP_PBE_CTL_unshift(st,val) SKM_sk_unshift(EVP_PBE_CTL, (st), (val)) #define sk_EVP_PBE_CTL_find(st,val) SKM_sk_find(EVP_PBE_CTL, (st), (val)) #define sk_EVP_PBE_CTL_find_ex(st,val) SKM_sk_find_ex(EVP_PBE_CTL, (st), (val)) #define sk_EVP_PBE_CTL_delete(st,i) SKM_sk_delete(EVP_PBE_CTL, (st), (i)) #define sk_EVP_PBE_CTL_delete_ptr(st,ptr) SKM_sk_delete_ptr(EVP_PBE_CTL, (st), (ptr)) #define sk_EVP_PBE_CTL_insert(st,val,i) SKM_sk_insert(EVP_PBE_CTL, (st), (val), (i)) #define sk_EVP_PBE_CTL_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(EVP_PBE_CTL, (st), (cmp)) #define sk_EVP_PBE_CTL_dup(st) SKM_sk_dup(EVP_PBE_CTL, st) #define sk_EVP_PBE_CTL_pop_free(st,free_func) SKM_sk_pop_free(EVP_PBE_CTL, (st), (free_func)) #define sk_EVP_PBE_CTL_shift(st) SKM_sk_shift(EVP_PBE_CTL, (st)) #define sk_EVP_PBE_CTL_pop(st) SKM_sk_pop(EVP_PBE_CTL, (st)) #define sk_EVP_PBE_CTL_sort(st) SKM_sk_sort(EVP_PBE_CTL, (st)) #define sk_EVP_PBE_CTL_is_sorted(st) SKM_sk_is_sorted(EVP_PBE_CTL, (st)) #define sk_EVP_PKEY_ASN1_METHOD_new(cmp) SKM_sk_new(EVP_PKEY_ASN1_METHOD, (cmp)) #define sk_EVP_PKEY_ASN1_METHOD_new_null() SKM_sk_new_null(EVP_PKEY_ASN1_METHOD) #define sk_EVP_PKEY_ASN1_METHOD_free(st) SKM_sk_free(EVP_PKEY_ASN1_METHOD, (st)) #define sk_EVP_PKEY_ASN1_METHOD_num(st) SKM_sk_num(EVP_PKEY_ASN1_METHOD, (st)) #define sk_EVP_PKEY_ASN1_METHOD_value(st,i) SKM_sk_value(EVP_PKEY_ASN1_METHOD, (st), (i)) #define sk_EVP_PKEY_ASN1_METHOD_set(st,i,val) SKM_sk_set(EVP_PKEY_ASN1_METHOD, (st), (i), (val)) #define sk_EVP_PKEY_ASN1_METHOD_zero(st) SKM_sk_zero(EVP_PKEY_ASN1_METHOD, (st)) #define sk_EVP_PKEY_ASN1_METHOD_push(st,val) SKM_sk_push(EVP_PKEY_ASN1_METHOD, (st), (val)) #define sk_EVP_PKEY_ASN1_METHOD_unshift(st,val) SKM_sk_unshift(EVP_PKEY_ASN1_METHOD, (st), (val)) #define sk_EVP_PKEY_ASN1_METHOD_find(st,val) SKM_sk_find(EVP_PKEY_ASN1_METHOD, (st), (val)) #define sk_EVP_PKEY_ASN1_METHOD_find_ex(st,val) SKM_sk_find_ex(EVP_PKEY_ASN1_METHOD, (st), (val)) #define sk_EVP_PKEY_ASN1_METHOD_delete(st,i) SKM_sk_delete(EVP_PKEY_ASN1_METHOD, (st), (i)) #define sk_EVP_PKEY_ASN1_METHOD_delete_ptr(st,ptr) SKM_sk_delete_ptr(EVP_PKEY_ASN1_METHOD, (st), (ptr)) #define sk_EVP_PKEY_ASN1_METHOD_insert(st,val,i) SKM_sk_insert(EVP_PKEY_ASN1_METHOD, (st), (val), (i)) #define sk_EVP_PKEY_ASN1_METHOD_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(EVP_PKEY_ASN1_METHOD, (st), (cmp)) #define sk_EVP_PKEY_ASN1_METHOD_dup(st) SKM_sk_dup(EVP_PKEY_ASN1_METHOD, st) #define sk_EVP_PKEY_ASN1_METHOD_pop_free(st,free_func) SKM_sk_pop_free(EVP_PKEY_ASN1_METHOD, (st), (free_func)) #define sk_EVP_PKEY_ASN1_METHOD_shift(st) SKM_sk_shift(EVP_PKEY_ASN1_METHOD, (st)) #define sk_EVP_PKEY_ASN1_METHOD_pop(st) SKM_sk_pop(EVP_PKEY_ASN1_METHOD, (st)) #define sk_EVP_PKEY_ASN1_METHOD_sort(st) SKM_sk_sort(EVP_PKEY_ASN1_METHOD, (st)) #define sk_EVP_PKEY_ASN1_METHOD_is_sorted(st) SKM_sk_is_sorted(EVP_PKEY_ASN1_METHOD, (st)) #define sk_EVP_PKEY_METHOD_new(cmp) SKM_sk_new(EVP_PKEY_METHOD, (cmp)) #define sk_EVP_PKEY_METHOD_new_null() SKM_sk_new_null(EVP_PKEY_METHOD) #define sk_EVP_PKEY_METHOD_free(st) SKM_sk_free(EVP_PKEY_METHOD, (st)) #define sk_EVP_PKEY_METHOD_num(st) SKM_sk_num(EVP_PKEY_METHOD, (st)) #define sk_EVP_PKEY_METHOD_value(st,i) SKM_sk_value(EVP_PKEY_METHOD, (st), (i)) #define sk_EVP_PKEY_METHOD_set(st,i,val) SKM_sk_set(EVP_PKEY_METHOD, (st), (i), (val)) #define sk_EVP_PKEY_METHOD_zero(st) SKM_sk_zero(EVP_PKEY_METHOD, (st)) #define sk_EVP_PKEY_METHOD_push(st,val) SKM_sk_push(EVP_PKEY_METHOD, (st), (val)) #define sk_EVP_PKEY_METHOD_unshift(st,val) SKM_sk_unshift(EVP_PKEY_METHOD, (st), (val)) #define sk_EVP_PKEY_METHOD_find(st,val) SKM_sk_find(EVP_PKEY_METHOD, (st), (val)) #define sk_EVP_PKEY_METHOD_find_ex(st,val) SKM_sk_find_ex(EVP_PKEY_METHOD, (st), (val)) #define sk_EVP_PKEY_METHOD_delete(st,i) SKM_sk_delete(EVP_PKEY_METHOD, (st), (i)) #define sk_EVP_PKEY_METHOD_delete_ptr(st,ptr) SKM_sk_delete_ptr(EVP_PKEY_METHOD, (st), (ptr)) #define sk_EVP_PKEY_METHOD_insert(st,val,i) SKM_sk_insert(EVP_PKEY_METHOD, (st), (val), (i)) #define sk_EVP_PKEY_METHOD_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(EVP_PKEY_METHOD, (st), (cmp)) #define sk_EVP_PKEY_METHOD_dup(st) SKM_sk_dup(EVP_PKEY_METHOD, st) #define sk_EVP_PKEY_METHOD_pop_free(st,free_func) SKM_sk_pop_free(EVP_PKEY_METHOD, (st), (free_func)) #define sk_EVP_PKEY_METHOD_shift(st) SKM_sk_shift(EVP_PKEY_METHOD, (st)) #define sk_EVP_PKEY_METHOD_pop(st) SKM_sk_pop(EVP_PKEY_METHOD, (st)) #define sk_EVP_PKEY_METHOD_sort(st) SKM_sk_sort(EVP_PKEY_METHOD, (st)) #define sk_EVP_PKEY_METHOD_is_sorted(st) SKM_sk_is_sorted(EVP_PKEY_METHOD, (st)) #define sk_GENERAL_NAME_new(cmp) SKM_sk_new(GENERAL_NAME, (cmp)) #define sk_GENERAL_NAME_new_null() SKM_sk_new_null(GENERAL_NAME) #define sk_GENERAL_NAME_free(st) SKM_sk_free(GENERAL_NAME, (st)) #define sk_GENERAL_NAME_num(st) SKM_sk_num(GENERAL_NAME, (st)) #define sk_GENERAL_NAME_value(st,i) SKM_sk_value(GENERAL_NAME, (st), (i)) #define sk_GENERAL_NAME_set(st,i,val) SKM_sk_set(GENERAL_NAME, (st), (i), (val)) #define sk_GENERAL_NAME_zero(st) SKM_sk_zero(GENERAL_NAME, (st)) #define sk_GENERAL_NAME_push(st,val) SKM_sk_push(GENERAL_NAME, (st), (val)) #define sk_GENERAL_NAME_unshift(st,val) SKM_sk_unshift(GENERAL_NAME, (st), (val)) #define sk_GENERAL_NAME_find(st,val) SKM_sk_find(GENERAL_NAME, (st), (val)) #define sk_GENERAL_NAME_find_ex(st,val) SKM_sk_find_ex(GENERAL_NAME, (st), (val)) #define sk_GENERAL_NAME_delete(st,i) SKM_sk_delete(GENERAL_NAME, (st), (i)) #define sk_GENERAL_NAME_delete_ptr(st,ptr) SKM_sk_delete_ptr(GENERAL_NAME, (st), (ptr)) #define sk_GENERAL_NAME_insert(st,val,i) SKM_sk_insert(GENERAL_NAME, (st), (val), (i)) #define sk_GENERAL_NAME_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(GENERAL_NAME, (st), (cmp)) #define sk_GENERAL_NAME_dup(st) SKM_sk_dup(GENERAL_NAME, st) #define sk_GENERAL_NAME_pop_free(st,free_func) SKM_sk_pop_free(GENERAL_NAME, (st), (free_func)) #define sk_GENERAL_NAME_shift(st) SKM_sk_shift(GENERAL_NAME, (st)) #define sk_GENERAL_NAME_pop(st) SKM_sk_pop(GENERAL_NAME, (st)) #define sk_GENERAL_NAME_sort(st) SKM_sk_sort(GENERAL_NAME, (st)) #define sk_GENERAL_NAME_is_sorted(st) SKM_sk_is_sorted(GENERAL_NAME, (st)) #define sk_GENERAL_NAMES_new(cmp) SKM_sk_new(GENERAL_NAMES, (cmp)) #define sk_GENERAL_NAMES_new_null() SKM_sk_new_null(GENERAL_NAMES) #define sk_GENERAL_NAMES_free(st) SKM_sk_free(GENERAL_NAMES, (st)) #define sk_GENERAL_NAMES_num(st) SKM_sk_num(GENERAL_NAMES, (st)) #define sk_GENERAL_NAMES_value(st,i) SKM_sk_value(GENERAL_NAMES, (st), (i)) #define sk_GENERAL_NAMES_set(st,i,val) SKM_sk_set(GENERAL_NAMES, (st), (i), (val)) #define sk_GENERAL_NAMES_zero(st) SKM_sk_zero(GENERAL_NAMES, (st)) #define sk_GENERAL_NAMES_push(st,val) SKM_sk_push(GENERAL_NAMES, (st), (val)) #define sk_GENERAL_NAMES_unshift(st,val) SKM_sk_unshift(GENERAL_NAMES, (st), (val)) #define sk_GENERAL_NAMES_find(st,val) SKM_sk_find(GENERAL_NAMES, (st), (val)) #define sk_GENERAL_NAMES_find_ex(st,val) SKM_sk_find_ex(GENERAL_NAMES, (st), (val)) #define sk_GENERAL_NAMES_delete(st,i) SKM_sk_delete(GENERAL_NAMES, (st), (i)) #define sk_GENERAL_NAMES_delete_ptr(st,ptr) SKM_sk_delete_ptr(GENERAL_NAMES, (st), (ptr)) #define sk_GENERAL_NAMES_insert(st,val,i) SKM_sk_insert(GENERAL_NAMES, (st), (val), (i)) #define sk_GENERAL_NAMES_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(GENERAL_NAMES, (st), (cmp)) #define sk_GENERAL_NAMES_dup(st) SKM_sk_dup(GENERAL_NAMES, st) #define sk_GENERAL_NAMES_pop_free(st,free_func) SKM_sk_pop_free(GENERAL_NAMES, (st), (free_func)) #define sk_GENERAL_NAMES_shift(st) SKM_sk_shift(GENERAL_NAMES, (st)) #define sk_GENERAL_NAMES_pop(st) SKM_sk_pop(GENERAL_NAMES, (st)) #define sk_GENERAL_NAMES_sort(st) SKM_sk_sort(GENERAL_NAMES, (st)) #define sk_GENERAL_NAMES_is_sorted(st) SKM_sk_is_sorted(GENERAL_NAMES, (st)) #define sk_GENERAL_SUBTREE_new(cmp) SKM_sk_new(GENERAL_SUBTREE, (cmp)) #define sk_GENERAL_SUBTREE_new_null() SKM_sk_new_null(GENERAL_SUBTREE) #define sk_GENERAL_SUBTREE_free(st) SKM_sk_free(GENERAL_SUBTREE, (st)) #define sk_GENERAL_SUBTREE_num(st) SKM_sk_num(GENERAL_SUBTREE, (st)) #define sk_GENERAL_SUBTREE_value(st,i) SKM_sk_value(GENERAL_SUBTREE, (st), (i)) #define sk_GENERAL_SUBTREE_set(st,i,val) SKM_sk_set(GENERAL_SUBTREE, (st), (i), (val)) #define sk_GENERAL_SUBTREE_zero(st) SKM_sk_zero(GENERAL_SUBTREE, (st)) #define sk_GENERAL_SUBTREE_push(st,val) SKM_sk_push(GENERAL_SUBTREE, (st), (val)) #define sk_GENERAL_SUBTREE_unshift(st,val) SKM_sk_unshift(GENERAL_SUBTREE, (st), (val)) #define sk_GENERAL_SUBTREE_find(st,val) SKM_sk_find(GENERAL_SUBTREE, (st), (val)) #define sk_GENERAL_SUBTREE_find_ex(st,val) SKM_sk_find_ex(GENERAL_SUBTREE, (st), (val)) #define sk_GENERAL_SUBTREE_delete(st,i) SKM_sk_delete(GENERAL_SUBTREE, (st), (i)) #define sk_GENERAL_SUBTREE_delete_ptr(st,ptr) SKM_sk_delete_ptr(GENERAL_SUBTREE, (st), (ptr)) #define sk_GENERAL_SUBTREE_insert(st,val,i) SKM_sk_insert(GENERAL_SUBTREE, (st), (val), (i)) #define sk_GENERAL_SUBTREE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(GENERAL_SUBTREE, (st), (cmp)) #define sk_GENERAL_SUBTREE_dup(st) SKM_sk_dup(GENERAL_SUBTREE, st) #define sk_GENERAL_SUBTREE_pop_free(st,free_func) SKM_sk_pop_free(GENERAL_SUBTREE, (st), (free_func)) #define sk_GENERAL_SUBTREE_shift(st) SKM_sk_shift(GENERAL_SUBTREE, (st)) #define sk_GENERAL_SUBTREE_pop(st) SKM_sk_pop(GENERAL_SUBTREE, (st)) #define sk_GENERAL_SUBTREE_sort(st) SKM_sk_sort(GENERAL_SUBTREE, (st)) #define sk_GENERAL_SUBTREE_is_sorted(st) SKM_sk_is_sorted(GENERAL_SUBTREE, (st)) #define sk_IPAddressFamily_new(cmp) SKM_sk_new(IPAddressFamily, (cmp)) #define sk_IPAddressFamily_new_null() SKM_sk_new_null(IPAddressFamily) #define sk_IPAddressFamily_free(st) SKM_sk_free(IPAddressFamily, (st)) #define sk_IPAddressFamily_num(st) SKM_sk_num(IPAddressFamily, (st)) #define sk_IPAddressFamily_value(st,i) SKM_sk_value(IPAddressFamily, (st), (i)) #define sk_IPAddressFamily_set(st,i,val) SKM_sk_set(IPAddressFamily, (st), (i), (val)) #define sk_IPAddressFamily_zero(st) SKM_sk_zero(IPAddressFamily, (st)) #define sk_IPAddressFamily_push(st,val) SKM_sk_push(IPAddressFamily, (st), (val)) #define sk_IPAddressFamily_unshift(st,val) SKM_sk_unshift(IPAddressFamily, (st), (val)) #define sk_IPAddressFamily_find(st,val) SKM_sk_find(IPAddressFamily, (st), (val)) #define sk_IPAddressFamily_find_ex(st,val) SKM_sk_find_ex(IPAddressFamily, (st), (val)) #define sk_IPAddressFamily_delete(st,i) SKM_sk_delete(IPAddressFamily, (st), (i)) #define sk_IPAddressFamily_delete_ptr(st,ptr) SKM_sk_delete_ptr(IPAddressFamily, (st), (ptr)) #define sk_IPAddressFamily_insert(st,val,i) SKM_sk_insert(IPAddressFamily, (st), (val), (i)) #define sk_IPAddressFamily_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(IPAddressFamily, (st), (cmp)) #define sk_IPAddressFamily_dup(st) SKM_sk_dup(IPAddressFamily, st) #define sk_IPAddressFamily_pop_free(st,free_func) SKM_sk_pop_free(IPAddressFamily, (st), (free_func)) #define sk_IPAddressFamily_shift(st) SKM_sk_shift(IPAddressFamily, (st)) #define sk_IPAddressFamily_pop(st) SKM_sk_pop(IPAddressFamily, (st)) #define sk_IPAddressFamily_sort(st) SKM_sk_sort(IPAddressFamily, (st)) #define sk_IPAddressFamily_is_sorted(st) SKM_sk_is_sorted(IPAddressFamily, (st)) #define sk_IPAddressOrRange_new(cmp) SKM_sk_new(IPAddressOrRange, (cmp)) #define sk_IPAddressOrRange_new_null() SKM_sk_new_null(IPAddressOrRange) #define sk_IPAddressOrRange_free(st) SKM_sk_free(IPAddressOrRange, (st)) #define sk_IPAddressOrRange_num(st) SKM_sk_num(IPAddressOrRange, (st)) #define sk_IPAddressOrRange_value(st,i) SKM_sk_value(IPAddressOrRange, (st), (i)) #define sk_IPAddressOrRange_set(st,i,val) SKM_sk_set(IPAddressOrRange, (st), (i), (val)) #define sk_IPAddressOrRange_zero(st) SKM_sk_zero(IPAddressOrRange, (st)) #define sk_IPAddressOrRange_push(st,val) SKM_sk_push(IPAddressOrRange, (st), (val)) #define sk_IPAddressOrRange_unshift(st,val) SKM_sk_unshift(IPAddressOrRange, (st), (val)) #define sk_IPAddressOrRange_find(st,val) SKM_sk_find(IPAddressOrRange, (st), (val)) #define sk_IPAddressOrRange_find_ex(st,val) SKM_sk_find_ex(IPAddressOrRange, (st), (val)) #define sk_IPAddressOrRange_delete(st,i) SKM_sk_delete(IPAddressOrRange, (st), (i)) #define sk_IPAddressOrRange_delete_ptr(st,ptr) SKM_sk_delete_ptr(IPAddressOrRange, (st), (ptr)) #define sk_IPAddressOrRange_insert(st,val,i) SKM_sk_insert(IPAddressOrRange, (st), (val), (i)) #define sk_IPAddressOrRange_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(IPAddressOrRange, (st), (cmp)) #define sk_IPAddressOrRange_dup(st) SKM_sk_dup(IPAddressOrRange, st) #define sk_IPAddressOrRange_pop_free(st,free_func) SKM_sk_pop_free(IPAddressOrRange, (st), (free_func)) #define sk_IPAddressOrRange_shift(st) SKM_sk_shift(IPAddressOrRange, (st)) #define sk_IPAddressOrRange_pop(st) SKM_sk_pop(IPAddressOrRange, (st)) #define sk_IPAddressOrRange_sort(st) SKM_sk_sort(IPAddressOrRange, (st)) #define sk_IPAddressOrRange_is_sorted(st) SKM_sk_is_sorted(IPAddressOrRange, (st)) #define sk_KRB5_APREQBODY_new(cmp) SKM_sk_new(KRB5_APREQBODY, (cmp)) #define sk_KRB5_APREQBODY_new_null() SKM_sk_new_null(KRB5_APREQBODY) #define sk_KRB5_APREQBODY_free(st) SKM_sk_free(KRB5_APREQBODY, (st)) #define sk_KRB5_APREQBODY_num(st) SKM_sk_num(KRB5_APREQBODY, (st)) #define sk_KRB5_APREQBODY_value(st,i) SKM_sk_value(KRB5_APREQBODY, (st), (i)) #define sk_KRB5_APREQBODY_set(st,i,val) SKM_sk_set(KRB5_APREQBODY, (st), (i), (val)) #define sk_KRB5_APREQBODY_zero(st) SKM_sk_zero(KRB5_APREQBODY, (st)) #define sk_KRB5_APREQBODY_push(st,val) SKM_sk_push(KRB5_APREQBODY, (st), (val)) #define sk_KRB5_APREQBODY_unshift(st,val) SKM_sk_unshift(KRB5_APREQBODY, (st), (val)) #define sk_KRB5_APREQBODY_find(st,val) SKM_sk_find(KRB5_APREQBODY, (st), (val)) #define sk_KRB5_APREQBODY_find_ex(st,val) SKM_sk_find_ex(KRB5_APREQBODY, (st), (val)) #define sk_KRB5_APREQBODY_delete(st,i) SKM_sk_delete(KRB5_APREQBODY, (st), (i)) #define sk_KRB5_APREQBODY_delete_ptr(st,ptr) SKM_sk_delete_ptr(KRB5_APREQBODY, (st), (ptr)) #define sk_KRB5_APREQBODY_insert(st,val,i) SKM_sk_insert(KRB5_APREQBODY, (st), (val), (i)) #define sk_KRB5_APREQBODY_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(KRB5_APREQBODY, (st), (cmp)) #define sk_KRB5_APREQBODY_dup(st) SKM_sk_dup(KRB5_APREQBODY, st) #define sk_KRB5_APREQBODY_pop_free(st,free_func) SKM_sk_pop_free(KRB5_APREQBODY, (st), (free_func)) #define sk_KRB5_APREQBODY_shift(st) SKM_sk_shift(KRB5_APREQBODY, (st)) #define sk_KRB5_APREQBODY_pop(st) SKM_sk_pop(KRB5_APREQBODY, (st)) #define sk_KRB5_APREQBODY_sort(st) SKM_sk_sort(KRB5_APREQBODY, (st)) #define sk_KRB5_APREQBODY_is_sorted(st) SKM_sk_is_sorted(KRB5_APREQBODY, (st)) #define sk_KRB5_AUTHDATA_new(cmp) SKM_sk_new(KRB5_AUTHDATA, (cmp)) #define sk_KRB5_AUTHDATA_new_null() SKM_sk_new_null(KRB5_AUTHDATA) #define sk_KRB5_AUTHDATA_free(st) SKM_sk_free(KRB5_AUTHDATA, (st)) #define sk_KRB5_AUTHDATA_num(st) SKM_sk_num(KRB5_AUTHDATA, (st)) #define sk_KRB5_AUTHDATA_value(st,i) SKM_sk_value(KRB5_AUTHDATA, (st), (i)) #define sk_KRB5_AUTHDATA_set(st,i,val) SKM_sk_set(KRB5_AUTHDATA, (st), (i), (val)) #define sk_KRB5_AUTHDATA_zero(st) SKM_sk_zero(KRB5_AUTHDATA, (st)) #define sk_KRB5_AUTHDATA_push(st,val) SKM_sk_push(KRB5_AUTHDATA, (st), (val)) #define sk_KRB5_AUTHDATA_unshift(st,val) SKM_sk_unshift(KRB5_AUTHDATA, (st), (val)) #define sk_KRB5_AUTHDATA_find(st,val) SKM_sk_find(KRB5_AUTHDATA, (st), (val)) #define sk_KRB5_AUTHDATA_find_ex(st,val) SKM_sk_find_ex(KRB5_AUTHDATA, (st), (val)) #define sk_KRB5_AUTHDATA_delete(st,i) SKM_sk_delete(KRB5_AUTHDATA, (st), (i)) #define sk_KRB5_AUTHDATA_delete_ptr(st,ptr) SKM_sk_delete_ptr(KRB5_AUTHDATA, (st), (ptr)) #define sk_KRB5_AUTHDATA_insert(st,val,i) SKM_sk_insert(KRB5_AUTHDATA, (st), (val), (i)) #define sk_KRB5_AUTHDATA_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(KRB5_AUTHDATA, (st), (cmp)) #define sk_KRB5_AUTHDATA_dup(st) SKM_sk_dup(KRB5_AUTHDATA, st) #define sk_KRB5_AUTHDATA_pop_free(st,free_func) SKM_sk_pop_free(KRB5_AUTHDATA, (st), (free_func)) #define sk_KRB5_AUTHDATA_shift(st) SKM_sk_shift(KRB5_AUTHDATA, (st)) #define sk_KRB5_AUTHDATA_pop(st) SKM_sk_pop(KRB5_AUTHDATA, (st)) #define sk_KRB5_AUTHDATA_sort(st) SKM_sk_sort(KRB5_AUTHDATA, (st)) #define sk_KRB5_AUTHDATA_is_sorted(st) SKM_sk_is_sorted(KRB5_AUTHDATA, (st)) #define sk_KRB5_AUTHENTBODY_new(cmp) SKM_sk_new(KRB5_AUTHENTBODY, (cmp)) #define sk_KRB5_AUTHENTBODY_new_null() SKM_sk_new_null(KRB5_AUTHENTBODY) #define sk_KRB5_AUTHENTBODY_free(st) SKM_sk_free(KRB5_AUTHENTBODY, (st)) #define sk_KRB5_AUTHENTBODY_num(st) SKM_sk_num(KRB5_AUTHENTBODY, (st)) #define sk_KRB5_AUTHENTBODY_value(st,i) SKM_sk_value(KRB5_AUTHENTBODY, (st), (i)) #define sk_KRB5_AUTHENTBODY_set(st,i,val) SKM_sk_set(KRB5_AUTHENTBODY, (st), (i), (val)) #define sk_KRB5_AUTHENTBODY_zero(st) SKM_sk_zero(KRB5_AUTHENTBODY, (st)) #define sk_KRB5_AUTHENTBODY_push(st,val) SKM_sk_push(KRB5_AUTHENTBODY, (st), (val)) #define sk_KRB5_AUTHENTBODY_unshift(st,val) SKM_sk_unshift(KRB5_AUTHENTBODY, (st), (val)) #define sk_KRB5_AUTHENTBODY_find(st,val) SKM_sk_find(KRB5_AUTHENTBODY, (st), (val)) #define sk_KRB5_AUTHENTBODY_find_ex(st,val) SKM_sk_find_ex(KRB5_AUTHENTBODY, (st), (val)) #define sk_KRB5_AUTHENTBODY_delete(st,i) SKM_sk_delete(KRB5_AUTHENTBODY, (st), (i)) #define sk_KRB5_AUTHENTBODY_delete_ptr(st,ptr) SKM_sk_delete_ptr(KRB5_AUTHENTBODY, (st), (ptr)) #define sk_KRB5_AUTHENTBODY_insert(st,val,i) SKM_sk_insert(KRB5_AUTHENTBODY, (st), (val), (i)) #define sk_KRB5_AUTHENTBODY_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(KRB5_AUTHENTBODY, (st), (cmp)) #define sk_KRB5_AUTHENTBODY_dup(st) SKM_sk_dup(KRB5_AUTHENTBODY, st) #define sk_KRB5_AUTHENTBODY_pop_free(st,free_func) SKM_sk_pop_free(KRB5_AUTHENTBODY, (st), (free_func)) #define sk_KRB5_AUTHENTBODY_shift(st) SKM_sk_shift(KRB5_AUTHENTBODY, (st)) #define sk_KRB5_AUTHENTBODY_pop(st) SKM_sk_pop(KRB5_AUTHENTBODY, (st)) #define sk_KRB5_AUTHENTBODY_sort(st) SKM_sk_sort(KRB5_AUTHENTBODY, (st)) #define sk_KRB5_AUTHENTBODY_is_sorted(st) SKM_sk_is_sorted(KRB5_AUTHENTBODY, (st)) #define sk_KRB5_CHECKSUM_new(cmp) SKM_sk_new(KRB5_CHECKSUM, (cmp)) #define sk_KRB5_CHECKSUM_new_null() SKM_sk_new_null(KRB5_CHECKSUM) #define sk_KRB5_CHECKSUM_free(st) SKM_sk_free(KRB5_CHECKSUM, (st)) #define sk_KRB5_CHECKSUM_num(st) SKM_sk_num(KRB5_CHECKSUM, (st)) #define sk_KRB5_CHECKSUM_value(st,i) SKM_sk_value(KRB5_CHECKSUM, (st), (i)) #define sk_KRB5_CHECKSUM_set(st,i,val) SKM_sk_set(KRB5_CHECKSUM, (st), (i), (val)) #define sk_KRB5_CHECKSUM_zero(st) SKM_sk_zero(KRB5_CHECKSUM, (st)) #define sk_KRB5_CHECKSUM_push(st,val) SKM_sk_push(KRB5_CHECKSUM, (st), (val)) #define sk_KRB5_CHECKSUM_unshift(st,val) SKM_sk_unshift(KRB5_CHECKSUM, (st), (val)) #define sk_KRB5_CHECKSUM_find(st,val) SKM_sk_find(KRB5_CHECKSUM, (st), (val)) #define sk_KRB5_CHECKSUM_find_ex(st,val) SKM_sk_find_ex(KRB5_CHECKSUM, (st), (val)) #define sk_KRB5_CHECKSUM_delete(st,i) SKM_sk_delete(KRB5_CHECKSUM, (st), (i)) #define sk_KRB5_CHECKSUM_delete_ptr(st,ptr) SKM_sk_delete_ptr(KRB5_CHECKSUM, (st), (ptr)) #define sk_KRB5_CHECKSUM_insert(st,val,i) SKM_sk_insert(KRB5_CHECKSUM, (st), (val), (i)) #define sk_KRB5_CHECKSUM_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(KRB5_CHECKSUM, (st), (cmp)) #define sk_KRB5_CHECKSUM_dup(st) SKM_sk_dup(KRB5_CHECKSUM, st) #define sk_KRB5_CHECKSUM_pop_free(st,free_func) SKM_sk_pop_free(KRB5_CHECKSUM, (st), (free_func)) #define sk_KRB5_CHECKSUM_shift(st) SKM_sk_shift(KRB5_CHECKSUM, (st)) #define sk_KRB5_CHECKSUM_pop(st) SKM_sk_pop(KRB5_CHECKSUM, (st)) #define sk_KRB5_CHECKSUM_sort(st) SKM_sk_sort(KRB5_CHECKSUM, (st)) #define sk_KRB5_CHECKSUM_is_sorted(st) SKM_sk_is_sorted(KRB5_CHECKSUM, (st)) #define sk_KRB5_ENCDATA_new(cmp) SKM_sk_new(KRB5_ENCDATA, (cmp)) #define sk_KRB5_ENCDATA_new_null() SKM_sk_new_null(KRB5_ENCDATA) #define sk_KRB5_ENCDATA_free(st) SKM_sk_free(KRB5_ENCDATA, (st)) #define sk_KRB5_ENCDATA_num(st) SKM_sk_num(KRB5_ENCDATA, (st)) #define sk_KRB5_ENCDATA_value(st,i) SKM_sk_value(KRB5_ENCDATA, (st), (i)) #define sk_KRB5_ENCDATA_set(st,i,val) SKM_sk_set(KRB5_ENCDATA, (st), (i), (val)) #define sk_KRB5_ENCDATA_zero(st) SKM_sk_zero(KRB5_ENCDATA, (st)) #define sk_KRB5_ENCDATA_push(st,val) SKM_sk_push(KRB5_ENCDATA, (st), (val)) #define sk_KRB5_ENCDATA_unshift(st,val) SKM_sk_unshift(KRB5_ENCDATA, (st), (val)) #define sk_KRB5_ENCDATA_find(st,val) SKM_sk_find(KRB5_ENCDATA, (st), (val)) #define sk_KRB5_ENCDATA_find_ex(st,val) SKM_sk_find_ex(KRB5_ENCDATA, (st), (val)) #define sk_KRB5_ENCDATA_delete(st,i) SKM_sk_delete(KRB5_ENCDATA, (st), (i)) #define sk_KRB5_ENCDATA_delete_ptr(st,ptr) SKM_sk_delete_ptr(KRB5_ENCDATA, (st), (ptr)) #define sk_KRB5_ENCDATA_insert(st,val,i) SKM_sk_insert(KRB5_ENCDATA, (st), (val), (i)) #define sk_KRB5_ENCDATA_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(KRB5_ENCDATA, (st), (cmp)) #define sk_KRB5_ENCDATA_dup(st) SKM_sk_dup(KRB5_ENCDATA, st) #define sk_KRB5_ENCDATA_pop_free(st,free_func) SKM_sk_pop_free(KRB5_ENCDATA, (st), (free_func)) #define sk_KRB5_ENCDATA_shift(st) SKM_sk_shift(KRB5_ENCDATA, (st)) #define sk_KRB5_ENCDATA_pop(st) SKM_sk_pop(KRB5_ENCDATA, (st)) #define sk_KRB5_ENCDATA_sort(st) SKM_sk_sort(KRB5_ENCDATA, (st)) #define sk_KRB5_ENCDATA_is_sorted(st) SKM_sk_is_sorted(KRB5_ENCDATA, (st)) #define sk_KRB5_ENCKEY_new(cmp) SKM_sk_new(KRB5_ENCKEY, (cmp)) #define sk_KRB5_ENCKEY_new_null() SKM_sk_new_null(KRB5_ENCKEY) #define sk_KRB5_ENCKEY_free(st) SKM_sk_free(KRB5_ENCKEY, (st)) #define sk_KRB5_ENCKEY_num(st) SKM_sk_num(KRB5_ENCKEY, (st)) #define sk_KRB5_ENCKEY_value(st,i) SKM_sk_value(KRB5_ENCKEY, (st), (i)) #define sk_KRB5_ENCKEY_set(st,i,val) SKM_sk_set(KRB5_ENCKEY, (st), (i), (val)) #define sk_KRB5_ENCKEY_zero(st) SKM_sk_zero(KRB5_ENCKEY, (st)) #define sk_KRB5_ENCKEY_push(st,val) SKM_sk_push(KRB5_ENCKEY, (st), (val)) #define sk_KRB5_ENCKEY_unshift(st,val) SKM_sk_unshift(KRB5_ENCKEY, (st), (val)) #define sk_KRB5_ENCKEY_find(st,val) SKM_sk_find(KRB5_ENCKEY, (st), (val)) #define sk_KRB5_ENCKEY_find_ex(st,val) SKM_sk_find_ex(KRB5_ENCKEY, (st), (val)) #define sk_KRB5_ENCKEY_delete(st,i) SKM_sk_delete(KRB5_ENCKEY, (st), (i)) #define sk_KRB5_ENCKEY_delete_ptr(st,ptr) SKM_sk_delete_ptr(KRB5_ENCKEY, (st), (ptr)) #define sk_KRB5_ENCKEY_insert(st,val,i) SKM_sk_insert(KRB5_ENCKEY, (st), (val), (i)) #define sk_KRB5_ENCKEY_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(KRB5_ENCKEY, (st), (cmp)) #define sk_KRB5_ENCKEY_dup(st) SKM_sk_dup(KRB5_ENCKEY, st) #define sk_KRB5_ENCKEY_pop_free(st,free_func) SKM_sk_pop_free(KRB5_ENCKEY, (st), (free_func)) #define sk_KRB5_ENCKEY_shift(st) SKM_sk_shift(KRB5_ENCKEY, (st)) #define sk_KRB5_ENCKEY_pop(st) SKM_sk_pop(KRB5_ENCKEY, (st)) #define sk_KRB5_ENCKEY_sort(st) SKM_sk_sort(KRB5_ENCKEY, (st)) #define sk_KRB5_ENCKEY_is_sorted(st) SKM_sk_is_sorted(KRB5_ENCKEY, (st)) #define sk_KRB5_PRINCNAME_new(cmp) SKM_sk_new(KRB5_PRINCNAME, (cmp)) #define sk_KRB5_PRINCNAME_new_null() SKM_sk_new_null(KRB5_PRINCNAME) #define sk_KRB5_PRINCNAME_free(st) SKM_sk_free(KRB5_PRINCNAME, (st)) #define sk_KRB5_PRINCNAME_num(st) SKM_sk_num(KRB5_PRINCNAME, (st)) #define sk_KRB5_PRINCNAME_value(st,i) SKM_sk_value(KRB5_PRINCNAME, (st), (i)) #define sk_KRB5_PRINCNAME_set(st,i,val) SKM_sk_set(KRB5_PRINCNAME, (st), (i), (val)) #define sk_KRB5_PRINCNAME_zero(st) SKM_sk_zero(KRB5_PRINCNAME, (st)) #define sk_KRB5_PRINCNAME_push(st,val) SKM_sk_push(KRB5_PRINCNAME, (st), (val)) #define sk_KRB5_PRINCNAME_unshift(st,val) SKM_sk_unshift(KRB5_PRINCNAME, (st), (val)) #define sk_KRB5_PRINCNAME_find(st,val) SKM_sk_find(KRB5_PRINCNAME, (st), (val)) #define sk_KRB5_PRINCNAME_find_ex(st,val) SKM_sk_find_ex(KRB5_PRINCNAME, (st), (val)) #define sk_KRB5_PRINCNAME_delete(st,i) SKM_sk_delete(KRB5_PRINCNAME, (st), (i)) #define sk_KRB5_PRINCNAME_delete_ptr(st,ptr) SKM_sk_delete_ptr(KRB5_PRINCNAME, (st), (ptr)) #define sk_KRB5_PRINCNAME_insert(st,val,i) SKM_sk_insert(KRB5_PRINCNAME, (st), (val), (i)) #define sk_KRB5_PRINCNAME_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(KRB5_PRINCNAME, (st), (cmp)) #define sk_KRB5_PRINCNAME_dup(st) SKM_sk_dup(KRB5_PRINCNAME, st) #define sk_KRB5_PRINCNAME_pop_free(st,free_func) SKM_sk_pop_free(KRB5_PRINCNAME, (st), (free_func)) #define sk_KRB5_PRINCNAME_shift(st) SKM_sk_shift(KRB5_PRINCNAME, (st)) #define sk_KRB5_PRINCNAME_pop(st) SKM_sk_pop(KRB5_PRINCNAME, (st)) #define sk_KRB5_PRINCNAME_sort(st) SKM_sk_sort(KRB5_PRINCNAME, (st)) #define sk_KRB5_PRINCNAME_is_sorted(st) SKM_sk_is_sorted(KRB5_PRINCNAME, (st)) #define sk_KRB5_TKTBODY_new(cmp) SKM_sk_new(KRB5_TKTBODY, (cmp)) #define sk_KRB5_TKTBODY_new_null() SKM_sk_new_null(KRB5_TKTBODY) #define sk_KRB5_TKTBODY_free(st) SKM_sk_free(KRB5_TKTBODY, (st)) #define sk_KRB5_TKTBODY_num(st) SKM_sk_num(KRB5_TKTBODY, (st)) #define sk_KRB5_TKTBODY_value(st,i) SKM_sk_value(KRB5_TKTBODY, (st), (i)) #define sk_KRB5_TKTBODY_set(st,i,val) SKM_sk_set(KRB5_TKTBODY, (st), (i), (val)) #define sk_KRB5_TKTBODY_zero(st) SKM_sk_zero(KRB5_TKTBODY, (st)) #define sk_KRB5_TKTBODY_push(st,val) SKM_sk_push(KRB5_TKTBODY, (st), (val)) #define sk_KRB5_TKTBODY_unshift(st,val) SKM_sk_unshift(KRB5_TKTBODY, (st), (val)) #define sk_KRB5_TKTBODY_find(st,val) SKM_sk_find(KRB5_TKTBODY, (st), (val)) #define sk_KRB5_TKTBODY_find_ex(st,val) SKM_sk_find_ex(KRB5_TKTBODY, (st), (val)) #define sk_KRB5_TKTBODY_delete(st,i) SKM_sk_delete(KRB5_TKTBODY, (st), (i)) #define sk_KRB5_TKTBODY_delete_ptr(st,ptr) SKM_sk_delete_ptr(KRB5_TKTBODY, (st), (ptr)) #define sk_KRB5_TKTBODY_insert(st,val,i) SKM_sk_insert(KRB5_TKTBODY, (st), (val), (i)) #define sk_KRB5_TKTBODY_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(KRB5_TKTBODY, (st), (cmp)) #define sk_KRB5_TKTBODY_dup(st) SKM_sk_dup(KRB5_TKTBODY, st) #define sk_KRB5_TKTBODY_pop_free(st,free_func) SKM_sk_pop_free(KRB5_TKTBODY, (st), (free_func)) #define sk_KRB5_TKTBODY_shift(st) SKM_sk_shift(KRB5_TKTBODY, (st)) #define sk_KRB5_TKTBODY_pop(st) SKM_sk_pop(KRB5_TKTBODY, (st)) #define sk_KRB5_TKTBODY_sort(st) SKM_sk_sort(KRB5_TKTBODY, (st)) #define sk_KRB5_TKTBODY_is_sorted(st) SKM_sk_is_sorted(KRB5_TKTBODY, (st)) #define sk_MEM_OBJECT_DATA_new(cmp) SKM_sk_new(MEM_OBJECT_DATA, (cmp)) #define sk_MEM_OBJECT_DATA_new_null() SKM_sk_new_null(MEM_OBJECT_DATA) #define sk_MEM_OBJECT_DATA_free(st) SKM_sk_free(MEM_OBJECT_DATA, (st)) #define sk_MEM_OBJECT_DATA_num(st) SKM_sk_num(MEM_OBJECT_DATA, (st)) #define sk_MEM_OBJECT_DATA_value(st,i) SKM_sk_value(MEM_OBJECT_DATA, (st), (i)) #define sk_MEM_OBJECT_DATA_set(st,i,val) SKM_sk_set(MEM_OBJECT_DATA, (st), (i), (val)) #define sk_MEM_OBJECT_DATA_zero(st) SKM_sk_zero(MEM_OBJECT_DATA, (st)) #define sk_MEM_OBJECT_DATA_push(st,val) SKM_sk_push(MEM_OBJECT_DATA, (st), (val)) #define sk_MEM_OBJECT_DATA_unshift(st,val) SKM_sk_unshift(MEM_OBJECT_DATA, (st), (val)) #define sk_MEM_OBJECT_DATA_find(st,val) SKM_sk_find(MEM_OBJECT_DATA, (st), (val)) #define sk_MEM_OBJECT_DATA_find_ex(st,val) SKM_sk_find_ex(MEM_OBJECT_DATA, (st), (val)) #define sk_MEM_OBJECT_DATA_delete(st,i) SKM_sk_delete(MEM_OBJECT_DATA, (st), (i)) #define sk_MEM_OBJECT_DATA_delete_ptr(st,ptr) SKM_sk_delete_ptr(MEM_OBJECT_DATA, (st), (ptr)) #define sk_MEM_OBJECT_DATA_insert(st,val,i) SKM_sk_insert(MEM_OBJECT_DATA, (st), (val), (i)) #define sk_MEM_OBJECT_DATA_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(MEM_OBJECT_DATA, (st), (cmp)) #define sk_MEM_OBJECT_DATA_dup(st) SKM_sk_dup(MEM_OBJECT_DATA, st) #define sk_MEM_OBJECT_DATA_pop_free(st,free_func) SKM_sk_pop_free(MEM_OBJECT_DATA, (st), (free_func)) #define sk_MEM_OBJECT_DATA_shift(st) SKM_sk_shift(MEM_OBJECT_DATA, (st)) #define sk_MEM_OBJECT_DATA_pop(st) SKM_sk_pop(MEM_OBJECT_DATA, (st)) #define sk_MEM_OBJECT_DATA_sort(st) SKM_sk_sort(MEM_OBJECT_DATA, (st)) #define sk_MEM_OBJECT_DATA_is_sorted(st) SKM_sk_is_sorted(MEM_OBJECT_DATA, (st)) #define sk_MIME_HEADER_new(cmp) SKM_sk_new(MIME_HEADER, (cmp)) #define sk_MIME_HEADER_new_null() SKM_sk_new_null(MIME_HEADER) #define sk_MIME_HEADER_free(st) SKM_sk_free(MIME_HEADER, (st)) #define sk_MIME_HEADER_num(st) SKM_sk_num(MIME_HEADER, (st)) #define sk_MIME_HEADER_value(st,i) SKM_sk_value(MIME_HEADER, (st), (i)) #define sk_MIME_HEADER_set(st,i,val) SKM_sk_set(MIME_HEADER, (st), (i), (val)) #define sk_MIME_HEADER_zero(st) SKM_sk_zero(MIME_HEADER, (st)) #define sk_MIME_HEADER_push(st,val) SKM_sk_push(MIME_HEADER, (st), (val)) #define sk_MIME_HEADER_unshift(st,val) SKM_sk_unshift(MIME_HEADER, (st), (val)) #define sk_MIME_HEADER_find(st,val) SKM_sk_find(MIME_HEADER, (st), (val)) #define sk_MIME_HEADER_find_ex(st,val) SKM_sk_find_ex(MIME_HEADER, (st), (val)) #define sk_MIME_HEADER_delete(st,i) SKM_sk_delete(MIME_HEADER, (st), (i)) #define sk_MIME_HEADER_delete_ptr(st,ptr) SKM_sk_delete_ptr(MIME_HEADER, (st), (ptr)) #define sk_MIME_HEADER_insert(st,val,i) SKM_sk_insert(MIME_HEADER, (st), (val), (i)) #define sk_MIME_HEADER_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(MIME_HEADER, (st), (cmp)) #define sk_MIME_HEADER_dup(st) SKM_sk_dup(MIME_HEADER, st) #define sk_MIME_HEADER_pop_free(st,free_func) SKM_sk_pop_free(MIME_HEADER, (st), (free_func)) #define sk_MIME_HEADER_shift(st) SKM_sk_shift(MIME_HEADER, (st)) #define sk_MIME_HEADER_pop(st) SKM_sk_pop(MIME_HEADER, (st)) #define sk_MIME_HEADER_sort(st) SKM_sk_sort(MIME_HEADER, (st)) #define sk_MIME_HEADER_is_sorted(st) SKM_sk_is_sorted(MIME_HEADER, (st)) #define sk_MIME_PARAM_new(cmp) SKM_sk_new(MIME_PARAM, (cmp)) #define sk_MIME_PARAM_new_null() SKM_sk_new_null(MIME_PARAM) #define sk_MIME_PARAM_free(st) SKM_sk_free(MIME_PARAM, (st)) #define sk_MIME_PARAM_num(st) SKM_sk_num(MIME_PARAM, (st)) #define sk_MIME_PARAM_value(st,i) SKM_sk_value(MIME_PARAM, (st), (i)) #define sk_MIME_PARAM_set(st,i,val) SKM_sk_set(MIME_PARAM, (st), (i), (val)) #define sk_MIME_PARAM_zero(st) SKM_sk_zero(MIME_PARAM, (st)) #define sk_MIME_PARAM_push(st,val) SKM_sk_push(MIME_PARAM, (st), (val)) #define sk_MIME_PARAM_unshift(st,val) SKM_sk_unshift(MIME_PARAM, (st), (val)) #define sk_MIME_PARAM_find(st,val) SKM_sk_find(MIME_PARAM, (st), (val)) #define sk_MIME_PARAM_find_ex(st,val) SKM_sk_find_ex(MIME_PARAM, (st), (val)) #define sk_MIME_PARAM_delete(st,i) SKM_sk_delete(MIME_PARAM, (st), (i)) #define sk_MIME_PARAM_delete_ptr(st,ptr) SKM_sk_delete_ptr(MIME_PARAM, (st), (ptr)) #define sk_MIME_PARAM_insert(st,val,i) SKM_sk_insert(MIME_PARAM, (st), (val), (i)) #define sk_MIME_PARAM_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(MIME_PARAM, (st), (cmp)) #define sk_MIME_PARAM_dup(st) SKM_sk_dup(MIME_PARAM, st) #define sk_MIME_PARAM_pop_free(st,free_func) SKM_sk_pop_free(MIME_PARAM, (st), (free_func)) #define sk_MIME_PARAM_shift(st) SKM_sk_shift(MIME_PARAM, (st)) #define sk_MIME_PARAM_pop(st) SKM_sk_pop(MIME_PARAM, (st)) #define sk_MIME_PARAM_sort(st) SKM_sk_sort(MIME_PARAM, (st)) #define sk_MIME_PARAM_is_sorted(st) SKM_sk_is_sorted(MIME_PARAM, (st)) #define sk_NAME_FUNCS_new(cmp) SKM_sk_new(NAME_FUNCS, (cmp)) #define sk_NAME_FUNCS_new_null() SKM_sk_new_null(NAME_FUNCS) #define sk_NAME_FUNCS_free(st) SKM_sk_free(NAME_FUNCS, (st)) #define sk_NAME_FUNCS_num(st) SKM_sk_num(NAME_FUNCS, (st)) #define sk_NAME_FUNCS_value(st,i) SKM_sk_value(NAME_FUNCS, (st), (i)) #define sk_NAME_FUNCS_set(st,i,val) SKM_sk_set(NAME_FUNCS, (st), (i), (val)) #define sk_NAME_FUNCS_zero(st) SKM_sk_zero(NAME_FUNCS, (st)) #define sk_NAME_FUNCS_push(st,val) SKM_sk_push(NAME_FUNCS, (st), (val)) #define sk_NAME_FUNCS_unshift(st,val) SKM_sk_unshift(NAME_FUNCS, (st), (val)) #define sk_NAME_FUNCS_find(st,val) SKM_sk_find(NAME_FUNCS, (st), (val)) #define sk_NAME_FUNCS_find_ex(st,val) SKM_sk_find_ex(NAME_FUNCS, (st), (val)) #define sk_NAME_FUNCS_delete(st,i) SKM_sk_delete(NAME_FUNCS, (st), (i)) #define sk_NAME_FUNCS_delete_ptr(st,ptr) SKM_sk_delete_ptr(NAME_FUNCS, (st), (ptr)) #define sk_NAME_FUNCS_insert(st,val,i) SKM_sk_insert(NAME_FUNCS, (st), (val), (i)) #define sk_NAME_FUNCS_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(NAME_FUNCS, (st), (cmp)) #define sk_NAME_FUNCS_dup(st) SKM_sk_dup(NAME_FUNCS, st) #define sk_NAME_FUNCS_pop_free(st,free_func) SKM_sk_pop_free(NAME_FUNCS, (st), (free_func)) #define sk_NAME_FUNCS_shift(st) SKM_sk_shift(NAME_FUNCS, (st)) #define sk_NAME_FUNCS_pop(st) SKM_sk_pop(NAME_FUNCS, (st)) #define sk_NAME_FUNCS_sort(st) SKM_sk_sort(NAME_FUNCS, (st)) #define sk_NAME_FUNCS_is_sorted(st) SKM_sk_is_sorted(NAME_FUNCS, (st)) #define sk_OCSP_CERTID_new(cmp) SKM_sk_new(OCSP_CERTID, (cmp)) #define sk_OCSP_CERTID_new_null() SKM_sk_new_null(OCSP_CERTID) #define sk_OCSP_CERTID_free(st) SKM_sk_free(OCSP_CERTID, (st)) #define sk_OCSP_CERTID_num(st) SKM_sk_num(OCSP_CERTID, (st)) #define sk_OCSP_CERTID_value(st,i) SKM_sk_value(OCSP_CERTID, (st), (i)) #define sk_OCSP_CERTID_set(st,i,val) SKM_sk_set(OCSP_CERTID, (st), (i), (val)) #define sk_OCSP_CERTID_zero(st) SKM_sk_zero(OCSP_CERTID, (st)) #define sk_OCSP_CERTID_push(st,val) SKM_sk_push(OCSP_CERTID, (st), (val)) #define sk_OCSP_CERTID_unshift(st,val) SKM_sk_unshift(OCSP_CERTID, (st), (val)) #define sk_OCSP_CERTID_find(st,val) SKM_sk_find(OCSP_CERTID, (st), (val)) #define sk_OCSP_CERTID_find_ex(st,val) SKM_sk_find_ex(OCSP_CERTID, (st), (val)) #define sk_OCSP_CERTID_delete(st,i) SKM_sk_delete(OCSP_CERTID, (st), (i)) #define sk_OCSP_CERTID_delete_ptr(st,ptr) SKM_sk_delete_ptr(OCSP_CERTID, (st), (ptr)) #define sk_OCSP_CERTID_insert(st,val,i) SKM_sk_insert(OCSP_CERTID, (st), (val), (i)) #define sk_OCSP_CERTID_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(OCSP_CERTID, (st), (cmp)) #define sk_OCSP_CERTID_dup(st) SKM_sk_dup(OCSP_CERTID, st) #define sk_OCSP_CERTID_pop_free(st,free_func) SKM_sk_pop_free(OCSP_CERTID, (st), (free_func)) #define sk_OCSP_CERTID_shift(st) SKM_sk_shift(OCSP_CERTID, (st)) #define sk_OCSP_CERTID_pop(st) SKM_sk_pop(OCSP_CERTID, (st)) #define sk_OCSP_CERTID_sort(st) SKM_sk_sort(OCSP_CERTID, (st)) #define sk_OCSP_CERTID_is_sorted(st) SKM_sk_is_sorted(OCSP_CERTID, (st)) #define sk_OCSP_ONEREQ_new(cmp) SKM_sk_new(OCSP_ONEREQ, (cmp)) #define sk_OCSP_ONEREQ_new_null() SKM_sk_new_null(OCSP_ONEREQ) #define sk_OCSP_ONEREQ_free(st) SKM_sk_free(OCSP_ONEREQ, (st)) #define sk_OCSP_ONEREQ_num(st) SKM_sk_num(OCSP_ONEREQ, (st)) #define sk_OCSP_ONEREQ_value(st,i) SKM_sk_value(OCSP_ONEREQ, (st), (i)) #define sk_OCSP_ONEREQ_set(st,i,val) SKM_sk_set(OCSP_ONEREQ, (st), (i), (val)) #define sk_OCSP_ONEREQ_zero(st) SKM_sk_zero(OCSP_ONEREQ, (st)) #define sk_OCSP_ONEREQ_push(st,val) SKM_sk_push(OCSP_ONEREQ, (st), (val)) #define sk_OCSP_ONEREQ_unshift(st,val) SKM_sk_unshift(OCSP_ONEREQ, (st), (val)) #define sk_OCSP_ONEREQ_find(st,val) SKM_sk_find(OCSP_ONEREQ, (st), (val)) #define sk_OCSP_ONEREQ_find_ex(st,val) SKM_sk_find_ex(OCSP_ONEREQ, (st), (val)) #define sk_OCSP_ONEREQ_delete(st,i) SKM_sk_delete(OCSP_ONEREQ, (st), (i)) #define sk_OCSP_ONEREQ_delete_ptr(st,ptr) SKM_sk_delete_ptr(OCSP_ONEREQ, (st), (ptr)) #define sk_OCSP_ONEREQ_insert(st,val,i) SKM_sk_insert(OCSP_ONEREQ, (st), (val), (i)) #define sk_OCSP_ONEREQ_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(OCSP_ONEREQ, (st), (cmp)) #define sk_OCSP_ONEREQ_dup(st) SKM_sk_dup(OCSP_ONEREQ, st) #define sk_OCSP_ONEREQ_pop_free(st,free_func) SKM_sk_pop_free(OCSP_ONEREQ, (st), (free_func)) #define sk_OCSP_ONEREQ_shift(st) SKM_sk_shift(OCSP_ONEREQ, (st)) #define sk_OCSP_ONEREQ_pop(st) SKM_sk_pop(OCSP_ONEREQ, (st)) #define sk_OCSP_ONEREQ_sort(st) SKM_sk_sort(OCSP_ONEREQ, (st)) #define sk_OCSP_ONEREQ_is_sorted(st) SKM_sk_is_sorted(OCSP_ONEREQ, (st)) #define sk_OCSP_RESPID_new(cmp) SKM_sk_new(OCSP_RESPID, (cmp)) #define sk_OCSP_RESPID_new_null() SKM_sk_new_null(OCSP_RESPID) #define sk_OCSP_RESPID_free(st) SKM_sk_free(OCSP_RESPID, (st)) #define sk_OCSP_RESPID_num(st) SKM_sk_num(OCSP_RESPID, (st)) #define sk_OCSP_RESPID_value(st,i) SKM_sk_value(OCSP_RESPID, (st), (i)) #define sk_OCSP_RESPID_set(st,i,val) SKM_sk_set(OCSP_RESPID, (st), (i), (val)) #define sk_OCSP_RESPID_zero(st) SKM_sk_zero(OCSP_RESPID, (st)) #define sk_OCSP_RESPID_push(st,val) SKM_sk_push(OCSP_RESPID, (st), (val)) #define sk_OCSP_RESPID_unshift(st,val) SKM_sk_unshift(OCSP_RESPID, (st), (val)) #define sk_OCSP_RESPID_find(st,val) SKM_sk_find(OCSP_RESPID, (st), (val)) #define sk_OCSP_RESPID_find_ex(st,val) SKM_sk_find_ex(OCSP_RESPID, (st), (val)) #define sk_OCSP_RESPID_delete(st,i) SKM_sk_delete(OCSP_RESPID, (st), (i)) #define sk_OCSP_RESPID_delete_ptr(st,ptr) SKM_sk_delete_ptr(OCSP_RESPID, (st), (ptr)) #define sk_OCSP_RESPID_insert(st,val,i) SKM_sk_insert(OCSP_RESPID, (st), (val), (i)) #define sk_OCSP_RESPID_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(OCSP_RESPID, (st), (cmp)) #define sk_OCSP_RESPID_dup(st) SKM_sk_dup(OCSP_RESPID, st) #define sk_OCSP_RESPID_pop_free(st,free_func) SKM_sk_pop_free(OCSP_RESPID, (st), (free_func)) #define sk_OCSP_RESPID_shift(st) SKM_sk_shift(OCSP_RESPID, (st)) #define sk_OCSP_RESPID_pop(st) SKM_sk_pop(OCSP_RESPID, (st)) #define sk_OCSP_RESPID_sort(st) SKM_sk_sort(OCSP_RESPID, (st)) #define sk_OCSP_RESPID_is_sorted(st) SKM_sk_is_sorted(OCSP_RESPID, (st)) #define sk_OCSP_SINGLERESP_new(cmp) SKM_sk_new(OCSP_SINGLERESP, (cmp)) #define sk_OCSP_SINGLERESP_new_null() SKM_sk_new_null(OCSP_SINGLERESP) #define sk_OCSP_SINGLERESP_free(st) SKM_sk_free(OCSP_SINGLERESP, (st)) #define sk_OCSP_SINGLERESP_num(st) SKM_sk_num(OCSP_SINGLERESP, (st)) #define sk_OCSP_SINGLERESP_value(st,i) SKM_sk_value(OCSP_SINGLERESP, (st), (i)) #define sk_OCSP_SINGLERESP_set(st,i,val) SKM_sk_set(OCSP_SINGLERESP, (st), (i), (val)) #define sk_OCSP_SINGLERESP_zero(st) SKM_sk_zero(OCSP_SINGLERESP, (st)) #define sk_OCSP_SINGLERESP_push(st,val) SKM_sk_push(OCSP_SINGLERESP, (st), (val)) #define sk_OCSP_SINGLERESP_unshift(st,val) SKM_sk_unshift(OCSP_SINGLERESP, (st), (val)) #define sk_OCSP_SINGLERESP_find(st,val) SKM_sk_find(OCSP_SINGLERESP, (st), (val)) #define sk_OCSP_SINGLERESP_find_ex(st,val) SKM_sk_find_ex(OCSP_SINGLERESP, (st), (val)) #define sk_OCSP_SINGLERESP_delete(st,i) SKM_sk_delete(OCSP_SINGLERESP, (st), (i)) #define sk_OCSP_SINGLERESP_delete_ptr(st,ptr) SKM_sk_delete_ptr(OCSP_SINGLERESP, (st), (ptr)) #define sk_OCSP_SINGLERESP_insert(st,val,i) SKM_sk_insert(OCSP_SINGLERESP, (st), (val), (i)) #define sk_OCSP_SINGLERESP_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(OCSP_SINGLERESP, (st), (cmp)) #define sk_OCSP_SINGLERESP_dup(st) SKM_sk_dup(OCSP_SINGLERESP, st) #define sk_OCSP_SINGLERESP_pop_free(st,free_func) SKM_sk_pop_free(OCSP_SINGLERESP, (st), (free_func)) #define sk_OCSP_SINGLERESP_shift(st) SKM_sk_shift(OCSP_SINGLERESP, (st)) #define sk_OCSP_SINGLERESP_pop(st) SKM_sk_pop(OCSP_SINGLERESP, (st)) #define sk_OCSP_SINGLERESP_sort(st) SKM_sk_sort(OCSP_SINGLERESP, (st)) #define sk_OCSP_SINGLERESP_is_sorted(st) SKM_sk_is_sorted(OCSP_SINGLERESP, (st)) #define sk_PKCS12_SAFEBAG_new(cmp) SKM_sk_new(PKCS12_SAFEBAG, (cmp)) #define sk_PKCS12_SAFEBAG_new_null() SKM_sk_new_null(PKCS12_SAFEBAG) #define sk_PKCS12_SAFEBAG_free(st) SKM_sk_free(PKCS12_SAFEBAG, (st)) #define sk_PKCS12_SAFEBAG_num(st) SKM_sk_num(PKCS12_SAFEBAG, (st)) #define sk_PKCS12_SAFEBAG_value(st,i) SKM_sk_value(PKCS12_SAFEBAG, (st), (i)) #define sk_PKCS12_SAFEBAG_set(st,i,val) SKM_sk_set(PKCS12_SAFEBAG, (st), (i), (val)) #define sk_PKCS12_SAFEBAG_zero(st) SKM_sk_zero(PKCS12_SAFEBAG, (st)) #define sk_PKCS12_SAFEBAG_push(st,val) SKM_sk_push(PKCS12_SAFEBAG, (st), (val)) #define sk_PKCS12_SAFEBAG_unshift(st,val) SKM_sk_unshift(PKCS12_SAFEBAG, (st), (val)) #define sk_PKCS12_SAFEBAG_find(st,val) SKM_sk_find(PKCS12_SAFEBAG, (st), (val)) #define sk_PKCS12_SAFEBAG_find_ex(st,val) SKM_sk_find_ex(PKCS12_SAFEBAG, (st), (val)) #define sk_PKCS12_SAFEBAG_delete(st,i) SKM_sk_delete(PKCS12_SAFEBAG, (st), (i)) #define sk_PKCS12_SAFEBAG_delete_ptr(st,ptr) SKM_sk_delete_ptr(PKCS12_SAFEBAG, (st), (ptr)) #define sk_PKCS12_SAFEBAG_insert(st,val,i) SKM_sk_insert(PKCS12_SAFEBAG, (st), (val), (i)) #define sk_PKCS12_SAFEBAG_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(PKCS12_SAFEBAG, (st), (cmp)) #define sk_PKCS12_SAFEBAG_dup(st) SKM_sk_dup(PKCS12_SAFEBAG, st) #define sk_PKCS12_SAFEBAG_pop_free(st,free_func) SKM_sk_pop_free(PKCS12_SAFEBAG, (st), (free_func)) #define sk_PKCS12_SAFEBAG_shift(st) SKM_sk_shift(PKCS12_SAFEBAG, (st)) #define sk_PKCS12_SAFEBAG_pop(st) SKM_sk_pop(PKCS12_SAFEBAG, (st)) #define sk_PKCS12_SAFEBAG_sort(st) SKM_sk_sort(PKCS12_SAFEBAG, (st)) #define sk_PKCS12_SAFEBAG_is_sorted(st) SKM_sk_is_sorted(PKCS12_SAFEBAG, (st)) #define sk_PKCS7_new(cmp) SKM_sk_new(PKCS7, (cmp)) #define sk_PKCS7_new_null() SKM_sk_new_null(PKCS7) #define sk_PKCS7_free(st) SKM_sk_free(PKCS7, (st)) #define sk_PKCS7_num(st) SKM_sk_num(PKCS7, (st)) #define sk_PKCS7_value(st,i) SKM_sk_value(PKCS7, (st), (i)) #define sk_PKCS7_set(st,i,val) SKM_sk_set(PKCS7, (st), (i), (val)) #define sk_PKCS7_zero(st) SKM_sk_zero(PKCS7, (st)) #define sk_PKCS7_push(st,val) SKM_sk_push(PKCS7, (st), (val)) #define sk_PKCS7_unshift(st,val) SKM_sk_unshift(PKCS7, (st), (val)) #define sk_PKCS7_find(st,val) SKM_sk_find(PKCS7, (st), (val)) #define sk_PKCS7_find_ex(st,val) SKM_sk_find_ex(PKCS7, (st), (val)) #define sk_PKCS7_delete(st,i) SKM_sk_delete(PKCS7, (st), (i)) #define sk_PKCS7_delete_ptr(st,ptr) SKM_sk_delete_ptr(PKCS7, (st), (ptr)) #define sk_PKCS7_insert(st,val,i) SKM_sk_insert(PKCS7, (st), (val), (i)) #define sk_PKCS7_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(PKCS7, (st), (cmp)) #define sk_PKCS7_dup(st) SKM_sk_dup(PKCS7, st) #define sk_PKCS7_pop_free(st,free_func) SKM_sk_pop_free(PKCS7, (st), (free_func)) #define sk_PKCS7_shift(st) SKM_sk_shift(PKCS7, (st)) #define sk_PKCS7_pop(st) SKM_sk_pop(PKCS7, (st)) #define sk_PKCS7_sort(st) SKM_sk_sort(PKCS7, (st)) #define sk_PKCS7_is_sorted(st) SKM_sk_is_sorted(PKCS7, (st)) #define sk_PKCS7_RECIP_INFO_new(cmp) SKM_sk_new(PKCS7_RECIP_INFO, (cmp)) #define sk_PKCS7_RECIP_INFO_new_null() SKM_sk_new_null(PKCS7_RECIP_INFO) #define sk_PKCS7_RECIP_INFO_free(st) SKM_sk_free(PKCS7_RECIP_INFO, (st)) #define sk_PKCS7_RECIP_INFO_num(st) SKM_sk_num(PKCS7_RECIP_INFO, (st)) #define sk_PKCS7_RECIP_INFO_value(st,i) SKM_sk_value(PKCS7_RECIP_INFO, (st), (i)) #define sk_PKCS7_RECIP_INFO_set(st,i,val) SKM_sk_set(PKCS7_RECIP_INFO, (st), (i), (val)) #define sk_PKCS7_RECIP_INFO_zero(st) SKM_sk_zero(PKCS7_RECIP_INFO, (st)) #define sk_PKCS7_RECIP_INFO_push(st,val) SKM_sk_push(PKCS7_RECIP_INFO, (st), (val)) #define sk_PKCS7_RECIP_INFO_unshift(st,val) SKM_sk_unshift(PKCS7_RECIP_INFO, (st), (val)) #define sk_PKCS7_RECIP_INFO_find(st,val) SKM_sk_find(PKCS7_RECIP_INFO, (st), (val)) #define sk_PKCS7_RECIP_INFO_find_ex(st,val) SKM_sk_find_ex(PKCS7_RECIP_INFO, (st), (val)) #define sk_PKCS7_RECIP_INFO_delete(st,i) SKM_sk_delete(PKCS7_RECIP_INFO, (st), (i)) #define sk_PKCS7_RECIP_INFO_delete_ptr(st,ptr) SKM_sk_delete_ptr(PKCS7_RECIP_INFO, (st), (ptr)) #define sk_PKCS7_RECIP_INFO_insert(st,val,i) SKM_sk_insert(PKCS7_RECIP_INFO, (st), (val), (i)) #define sk_PKCS7_RECIP_INFO_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(PKCS7_RECIP_INFO, (st), (cmp)) #define sk_PKCS7_RECIP_INFO_dup(st) SKM_sk_dup(PKCS7_RECIP_INFO, st) #define sk_PKCS7_RECIP_INFO_pop_free(st,free_func) SKM_sk_pop_free(PKCS7_RECIP_INFO, (st), (free_func)) #define sk_PKCS7_RECIP_INFO_shift(st) SKM_sk_shift(PKCS7_RECIP_INFO, (st)) #define sk_PKCS7_RECIP_INFO_pop(st) SKM_sk_pop(PKCS7_RECIP_INFO, (st)) #define sk_PKCS7_RECIP_INFO_sort(st) SKM_sk_sort(PKCS7_RECIP_INFO, (st)) #define sk_PKCS7_RECIP_INFO_is_sorted(st) SKM_sk_is_sorted(PKCS7_RECIP_INFO, (st)) #define sk_PKCS7_SIGNER_INFO_new(cmp) SKM_sk_new(PKCS7_SIGNER_INFO, (cmp)) #define sk_PKCS7_SIGNER_INFO_new_null() SKM_sk_new_null(PKCS7_SIGNER_INFO) #define sk_PKCS7_SIGNER_INFO_free(st) SKM_sk_free(PKCS7_SIGNER_INFO, (st)) #define sk_PKCS7_SIGNER_INFO_num(st) SKM_sk_num(PKCS7_SIGNER_INFO, (st)) #define sk_PKCS7_SIGNER_INFO_value(st,i) SKM_sk_value(PKCS7_SIGNER_INFO, (st), (i)) #define sk_PKCS7_SIGNER_INFO_set(st,i,val) SKM_sk_set(PKCS7_SIGNER_INFO, (st), (i), (val)) #define sk_PKCS7_SIGNER_INFO_zero(st) SKM_sk_zero(PKCS7_SIGNER_INFO, (st)) #define sk_PKCS7_SIGNER_INFO_push(st,val) SKM_sk_push(PKCS7_SIGNER_INFO, (st), (val)) #define sk_PKCS7_SIGNER_INFO_unshift(st,val) SKM_sk_unshift(PKCS7_SIGNER_INFO, (st), (val)) #define sk_PKCS7_SIGNER_INFO_find(st,val) SKM_sk_find(PKCS7_SIGNER_INFO, (st), (val)) #define sk_PKCS7_SIGNER_INFO_find_ex(st,val) SKM_sk_find_ex(PKCS7_SIGNER_INFO, (st), (val)) #define sk_PKCS7_SIGNER_INFO_delete(st,i) SKM_sk_delete(PKCS7_SIGNER_INFO, (st), (i)) #define sk_PKCS7_SIGNER_INFO_delete_ptr(st,ptr) SKM_sk_delete_ptr(PKCS7_SIGNER_INFO, (st), (ptr)) #define sk_PKCS7_SIGNER_INFO_insert(st,val,i) SKM_sk_insert(PKCS7_SIGNER_INFO, (st), (val), (i)) #define sk_PKCS7_SIGNER_INFO_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(PKCS7_SIGNER_INFO, (st), (cmp)) #define sk_PKCS7_SIGNER_INFO_dup(st) SKM_sk_dup(PKCS7_SIGNER_INFO, st) #define sk_PKCS7_SIGNER_INFO_pop_free(st,free_func) SKM_sk_pop_free(PKCS7_SIGNER_INFO, (st), (free_func)) #define sk_PKCS7_SIGNER_INFO_shift(st) SKM_sk_shift(PKCS7_SIGNER_INFO, (st)) #define sk_PKCS7_SIGNER_INFO_pop(st) SKM_sk_pop(PKCS7_SIGNER_INFO, (st)) #define sk_PKCS7_SIGNER_INFO_sort(st) SKM_sk_sort(PKCS7_SIGNER_INFO, (st)) #define sk_PKCS7_SIGNER_INFO_is_sorted(st) SKM_sk_is_sorted(PKCS7_SIGNER_INFO, (st)) #define sk_POLICYINFO_new(cmp) SKM_sk_new(POLICYINFO, (cmp)) #define sk_POLICYINFO_new_null() SKM_sk_new_null(POLICYINFO) #define sk_POLICYINFO_free(st) SKM_sk_free(POLICYINFO, (st)) #define sk_POLICYINFO_num(st) SKM_sk_num(POLICYINFO, (st)) #define sk_POLICYINFO_value(st,i) SKM_sk_value(POLICYINFO, (st), (i)) #define sk_POLICYINFO_set(st,i,val) SKM_sk_set(POLICYINFO, (st), (i), (val)) #define sk_POLICYINFO_zero(st) SKM_sk_zero(POLICYINFO, (st)) #define sk_POLICYINFO_push(st,val) SKM_sk_push(POLICYINFO, (st), (val)) #define sk_POLICYINFO_unshift(st,val) SKM_sk_unshift(POLICYINFO, (st), (val)) #define sk_POLICYINFO_find(st,val) SKM_sk_find(POLICYINFO, (st), (val)) #define sk_POLICYINFO_find_ex(st,val) SKM_sk_find_ex(POLICYINFO, (st), (val)) #define sk_POLICYINFO_delete(st,i) SKM_sk_delete(POLICYINFO, (st), (i)) #define sk_POLICYINFO_delete_ptr(st,ptr) SKM_sk_delete_ptr(POLICYINFO, (st), (ptr)) #define sk_POLICYINFO_insert(st,val,i) SKM_sk_insert(POLICYINFO, (st), (val), (i)) #define sk_POLICYINFO_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(POLICYINFO, (st), (cmp)) #define sk_POLICYINFO_dup(st) SKM_sk_dup(POLICYINFO, st) #define sk_POLICYINFO_pop_free(st,free_func) SKM_sk_pop_free(POLICYINFO, (st), (free_func)) #define sk_POLICYINFO_shift(st) SKM_sk_shift(POLICYINFO, (st)) #define sk_POLICYINFO_pop(st) SKM_sk_pop(POLICYINFO, (st)) #define sk_POLICYINFO_sort(st) SKM_sk_sort(POLICYINFO, (st)) #define sk_POLICYINFO_is_sorted(st) SKM_sk_is_sorted(POLICYINFO, (st)) #define sk_POLICYQUALINFO_new(cmp) SKM_sk_new(POLICYQUALINFO, (cmp)) #define sk_POLICYQUALINFO_new_null() SKM_sk_new_null(POLICYQUALINFO) #define sk_POLICYQUALINFO_free(st) SKM_sk_free(POLICYQUALINFO, (st)) #define sk_POLICYQUALINFO_num(st) SKM_sk_num(POLICYQUALINFO, (st)) #define sk_POLICYQUALINFO_value(st,i) SKM_sk_value(POLICYQUALINFO, (st), (i)) #define sk_POLICYQUALINFO_set(st,i,val) SKM_sk_set(POLICYQUALINFO, (st), (i), (val)) #define sk_POLICYQUALINFO_zero(st) SKM_sk_zero(POLICYQUALINFO, (st)) #define sk_POLICYQUALINFO_push(st,val) SKM_sk_push(POLICYQUALINFO, (st), (val)) #define sk_POLICYQUALINFO_unshift(st,val) SKM_sk_unshift(POLICYQUALINFO, (st), (val)) #define sk_POLICYQUALINFO_find(st,val) SKM_sk_find(POLICYQUALINFO, (st), (val)) #define sk_POLICYQUALINFO_find_ex(st,val) SKM_sk_find_ex(POLICYQUALINFO, (st), (val)) #define sk_POLICYQUALINFO_delete(st,i) SKM_sk_delete(POLICYQUALINFO, (st), (i)) #define sk_POLICYQUALINFO_delete_ptr(st,ptr) SKM_sk_delete_ptr(POLICYQUALINFO, (st), (ptr)) #define sk_POLICYQUALINFO_insert(st,val,i) SKM_sk_insert(POLICYQUALINFO, (st), (val), (i)) #define sk_POLICYQUALINFO_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(POLICYQUALINFO, (st), (cmp)) #define sk_POLICYQUALINFO_dup(st) SKM_sk_dup(POLICYQUALINFO, st) #define sk_POLICYQUALINFO_pop_free(st,free_func) SKM_sk_pop_free(POLICYQUALINFO, (st), (free_func)) #define sk_POLICYQUALINFO_shift(st) SKM_sk_shift(POLICYQUALINFO, (st)) #define sk_POLICYQUALINFO_pop(st) SKM_sk_pop(POLICYQUALINFO, (st)) #define sk_POLICYQUALINFO_sort(st) SKM_sk_sort(POLICYQUALINFO, (st)) #define sk_POLICYQUALINFO_is_sorted(st) SKM_sk_is_sorted(POLICYQUALINFO, (st)) #define sk_POLICY_MAPPING_new(cmp) SKM_sk_new(POLICY_MAPPING, (cmp)) #define sk_POLICY_MAPPING_new_null() SKM_sk_new_null(POLICY_MAPPING) #define sk_POLICY_MAPPING_free(st) SKM_sk_free(POLICY_MAPPING, (st)) #define sk_POLICY_MAPPING_num(st) SKM_sk_num(POLICY_MAPPING, (st)) #define sk_POLICY_MAPPING_value(st,i) SKM_sk_value(POLICY_MAPPING, (st), (i)) #define sk_POLICY_MAPPING_set(st,i,val) SKM_sk_set(POLICY_MAPPING, (st), (i), (val)) #define sk_POLICY_MAPPING_zero(st) SKM_sk_zero(POLICY_MAPPING, (st)) #define sk_POLICY_MAPPING_push(st,val) SKM_sk_push(POLICY_MAPPING, (st), (val)) #define sk_POLICY_MAPPING_unshift(st,val) SKM_sk_unshift(POLICY_MAPPING, (st), (val)) #define sk_POLICY_MAPPING_find(st,val) SKM_sk_find(POLICY_MAPPING, (st), (val)) #define sk_POLICY_MAPPING_find_ex(st,val) SKM_sk_find_ex(POLICY_MAPPING, (st), (val)) #define sk_POLICY_MAPPING_delete(st,i) SKM_sk_delete(POLICY_MAPPING, (st), (i)) #define sk_POLICY_MAPPING_delete_ptr(st,ptr) SKM_sk_delete_ptr(POLICY_MAPPING, (st), (ptr)) #define sk_POLICY_MAPPING_insert(st,val,i) SKM_sk_insert(POLICY_MAPPING, (st), (val), (i)) #define sk_POLICY_MAPPING_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(POLICY_MAPPING, (st), (cmp)) #define sk_POLICY_MAPPING_dup(st) SKM_sk_dup(POLICY_MAPPING, st) #define sk_POLICY_MAPPING_pop_free(st,free_func) SKM_sk_pop_free(POLICY_MAPPING, (st), (free_func)) #define sk_POLICY_MAPPING_shift(st) SKM_sk_shift(POLICY_MAPPING, (st)) #define sk_POLICY_MAPPING_pop(st) SKM_sk_pop(POLICY_MAPPING, (st)) #define sk_POLICY_MAPPING_sort(st) SKM_sk_sort(POLICY_MAPPING, (st)) #define sk_POLICY_MAPPING_is_sorted(st) SKM_sk_is_sorted(POLICY_MAPPING, (st)) #define sk_SRP_gN_new(cmp) SKM_sk_new(SRP_gN, (cmp)) #define sk_SRP_gN_new_null() SKM_sk_new_null(SRP_gN) #define sk_SRP_gN_free(st) SKM_sk_free(SRP_gN, (st)) #define sk_SRP_gN_num(st) SKM_sk_num(SRP_gN, (st)) #define sk_SRP_gN_value(st,i) SKM_sk_value(SRP_gN, (st), (i)) #define sk_SRP_gN_set(st,i,val) SKM_sk_set(SRP_gN, (st), (i), (val)) #define sk_SRP_gN_zero(st) SKM_sk_zero(SRP_gN, (st)) #define sk_SRP_gN_push(st,val) SKM_sk_push(SRP_gN, (st), (val)) #define sk_SRP_gN_unshift(st,val) SKM_sk_unshift(SRP_gN, (st), (val)) #define sk_SRP_gN_find(st,val) SKM_sk_find(SRP_gN, (st), (val)) #define sk_SRP_gN_find_ex(st,val) SKM_sk_find_ex(SRP_gN, (st), (val)) #define sk_SRP_gN_delete(st,i) SKM_sk_delete(SRP_gN, (st), (i)) #define sk_SRP_gN_delete_ptr(st,ptr) SKM_sk_delete_ptr(SRP_gN, (st), (ptr)) #define sk_SRP_gN_insert(st,val,i) SKM_sk_insert(SRP_gN, (st), (val), (i)) #define sk_SRP_gN_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(SRP_gN, (st), (cmp)) #define sk_SRP_gN_dup(st) SKM_sk_dup(SRP_gN, st) #define sk_SRP_gN_pop_free(st,free_func) SKM_sk_pop_free(SRP_gN, (st), (free_func)) #define sk_SRP_gN_shift(st) SKM_sk_shift(SRP_gN, (st)) #define sk_SRP_gN_pop(st) SKM_sk_pop(SRP_gN, (st)) #define sk_SRP_gN_sort(st) SKM_sk_sort(SRP_gN, (st)) #define sk_SRP_gN_is_sorted(st) SKM_sk_is_sorted(SRP_gN, (st)) #define sk_SRP_gN_cache_new(cmp) SKM_sk_new(SRP_gN_cache, (cmp)) #define sk_SRP_gN_cache_new_null() SKM_sk_new_null(SRP_gN_cache) #define sk_SRP_gN_cache_free(st) SKM_sk_free(SRP_gN_cache, (st)) #define sk_SRP_gN_cache_num(st) SKM_sk_num(SRP_gN_cache, (st)) #define sk_SRP_gN_cache_value(st,i) SKM_sk_value(SRP_gN_cache, (st), (i)) #define sk_SRP_gN_cache_set(st,i,val) SKM_sk_set(SRP_gN_cache, (st), (i), (val)) #define sk_SRP_gN_cache_zero(st) SKM_sk_zero(SRP_gN_cache, (st)) #define sk_SRP_gN_cache_push(st,val) SKM_sk_push(SRP_gN_cache, (st), (val)) #define sk_SRP_gN_cache_unshift(st,val) SKM_sk_unshift(SRP_gN_cache, (st), (val)) #define sk_SRP_gN_cache_find(st,val) SKM_sk_find(SRP_gN_cache, (st), (val)) #define sk_SRP_gN_cache_find_ex(st,val) SKM_sk_find_ex(SRP_gN_cache, (st), (val)) #define sk_SRP_gN_cache_delete(st,i) SKM_sk_delete(SRP_gN_cache, (st), (i)) #define sk_SRP_gN_cache_delete_ptr(st,ptr) SKM_sk_delete_ptr(SRP_gN_cache, (st), (ptr)) #define sk_SRP_gN_cache_insert(st,val,i) SKM_sk_insert(SRP_gN_cache, (st), (val), (i)) #define sk_SRP_gN_cache_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(SRP_gN_cache, (st), (cmp)) #define sk_SRP_gN_cache_dup(st) SKM_sk_dup(SRP_gN_cache, st) #define sk_SRP_gN_cache_pop_free(st,free_func) SKM_sk_pop_free(SRP_gN_cache, (st), (free_func)) #define sk_SRP_gN_cache_shift(st) SKM_sk_shift(SRP_gN_cache, (st)) #define sk_SRP_gN_cache_pop(st) SKM_sk_pop(SRP_gN_cache, (st)) #define sk_SRP_gN_cache_sort(st) SKM_sk_sort(SRP_gN_cache, (st)) #define sk_SRP_gN_cache_is_sorted(st) SKM_sk_is_sorted(SRP_gN_cache, (st)) #define sk_SRP_user_pwd_new(cmp) SKM_sk_new(SRP_user_pwd, (cmp)) #define sk_SRP_user_pwd_new_null() SKM_sk_new_null(SRP_user_pwd) #define sk_SRP_user_pwd_free(st) SKM_sk_free(SRP_user_pwd, (st)) #define sk_SRP_user_pwd_num(st) SKM_sk_num(SRP_user_pwd, (st)) #define sk_SRP_user_pwd_value(st,i) SKM_sk_value(SRP_user_pwd, (st), (i)) #define sk_SRP_user_pwd_set(st,i,val) SKM_sk_set(SRP_user_pwd, (st), (i), (val)) #define sk_SRP_user_pwd_zero(st) SKM_sk_zero(SRP_user_pwd, (st)) #define sk_SRP_user_pwd_push(st,val) SKM_sk_push(SRP_user_pwd, (st), (val)) #define sk_SRP_user_pwd_unshift(st,val) SKM_sk_unshift(SRP_user_pwd, (st), (val)) #define sk_SRP_user_pwd_find(st,val) SKM_sk_find(SRP_user_pwd, (st), (val)) #define sk_SRP_user_pwd_find_ex(st,val) SKM_sk_find_ex(SRP_user_pwd, (st), (val)) #define sk_SRP_user_pwd_delete(st,i) SKM_sk_delete(SRP_user_pwd, (st), (i)) #define sk_SRP_user_pwd_delete_ptr(st,ptr) SKM_sk_delete_ptr(SRP_user_pwd, (st), (ptr)) #define sk_SRP_user_pwd_insert(st,val,i) SKM_sk_insert(SRP_user_pwd, (st), (val), (i)) #define sk_SRP_user_pwd_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(SRP_user_pwd, (st), (cmp)) #define sk_SRP_user_pwd_dup(st) SKM_sk_dup(SRP_user_pwd, st) #define sk_SRP_user_pwd_pop_free(st,free_func) SKM_sk_pop_free(SRP_user_pwd, (st), (free_func)) #define sk_SRP_user_pwd_shift(st) SKM_sk_shift(SRP_user_pwd, (st)) #define sk_SRP_user_pwd_pop(st) SKM_sk_pop(SRP_user_pwd, (st)) #define sk_SRP_user_pwd_sort(st) SKM_sk_sort(SRP_user_pwd, (st)) #define sk_SRP_user_pwd_is_sorted(st) SKM_sk_is_sorted(SRP_user_pwd, (st)) #define sk_SRTP_PROTECTION_PROFILE_new(cmp) SKM_sk_new(SRTP_PROTECTION_PROFILE, (cmp)) #define sk_SRTP_PROTECTION_PROFILE_new_null() SKM_sk_new_null(SRTP_PROTECTION_PROFILE) #define sk_SRTP_PROTECTION_PROFILE_free(st) SKM_sk_free(SRTP_PROTECTION_PROFILE, (st)) #define sk_SRTP_PROTECTION_PROFILE_num(st) SKM_sk_num(SRTP_PROTECTION_PROFILE, (st)) #define sk_SRTP_PROTECTION_PROFILE_value(st,i) SKM_sk_value(SRTP_PROTECTION_PROFILE, (st), (i)) #define sk_SRTP_PROTECTION_PROFILE_set(st,i,val) SKM_sk_set(SRTP_PROTECTION_PROFILE, (st), (i), (val)) #define sk_SRTP_PROTECTION_PROFILE_zero(st) SKM_sk_zero(SRTP_PROTECTION_PROFILE, (st)) #define sk_SRTP_PROTECTION_PROFILE_push(st,val) SKM_sk_push(SRTP_PROTECTION_PROFILE, (st), (val)) #define sk_SRTP_PROTECTION_PROFILE_unshift(st,val) SKM_sk_unshift(SRTP_PROTECTION_PROFILE, (st), (val)) #define sk_SRTP_PROTECTION_PROFILE_find(st,val) SKM_sk_find(SRTP_PROTECTION_PROFILE, (st), (val)) #define sk_SRTP_PROTECTION_PROFILE_find_ex(st,val) SKM_sk_find_ex(SRTP_PROTECTION_PROFILE, (st), (val)) #define sk_SRTP_PROTECTION_PROFILE_delete(st,i) SKM_sk_delete(SRTP_PROTECTION_PROFILE, (st), (i)) #define sk_SRTP_PROTECTION_PROFILE_delete_ptr(st,ptr) SKM_sk_delete_ptr(SRTP_PROTECTION_PROFILE, (st), (ptr)) #define sk_SRTP_PROTECTION_PROFILE_insert(st,val,i) SKM_sk_insert(SRTP_PROTECTION_PROFILE, (st), (val), (i)) #define sk_SRTP_PROTECTION_PROFILE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(SRTP_PROTECTION_PROFILE, (st), (cmp)) #define sk_SRTP_PROTECTION_PROFILE_dup(st) SKM_sk_dup(SRTP_PROTECTION_PROFILE, st) #define sk_SRTP_PROTECTION_PROFILE_pop_free(st,free_func) SKM_sk_pop_free(SRTP_PROTECTION_PROFILE, (st), (free_func)) #define sk_SRTP_PROTECTION_PROFILE_shift(st) SKM_sk_shift(SRTP_PROTECTION_PROFILE, (st)) #define sk_SRTP_PROTECTION_PROFILE_pop(st) SKM_sk_pop(SRTP_PROTECTION_PROFILE, (st)) #define sk_SRTP_PROTECTION_PROFILE_sort(st) SKM_sk_sort(SRTP_PROTECTION_PROFILE, (st)) #define sk_SRTP_PROTECTION_PROFILE_is_sorted(st) SKM_sk_is_sorted(SRTP_PROTECTION_PROFILE, (st)) #define sk_SSL_CIPHER_new(cmp) SKM_sk_new(SSL_CIPHER, (cmp)) #define sk_SSL_CIPHER_new_null() SKM_sk_new_null(SSL_CIPHER) #define sk_SSL_CIPHER_free(st) SKM_sk_free(SSL_CIPHER, (st)) #define sk_SSL_CIPHER_num(st) SKM_sk_num(SSL_CIPHER, (st)) #define sk_SSL_CIPHER_value(st,i) SKM_sk_value(SSL_CIPHER, (st), (i)) #define sk_SSL_CIPHER_set(st,i,val) SKM_sk_set(SSL_CIPHER, (st), (i), (val)) #define sk_SSL_CIPHER_zero(st) SKM_sk_zero(SSL_CIPHER, (st)) #define sk_SSL_CIPHER_push(st,val) SKM_sk_push(SSL_CIPHER, (st), (val)) #define sk_SSL_CIPHER_unshift(st,val) SKM_sk_unshift(SSL_CIPHER, (st), (val)) #define sk_SSL_CIPHER_find(st,val) SKM_sk_find(SSL_CIPHER, (st), (val)) #define sk_SSL_CIPHER_find_ex(st,val) SKM_sk_find_ex(SSL_CIPHER, (st), (val)) #define sk_SSL_CIPHER_delete(st,i) SKM_sk_delete(SSL_CIPHER, (st), (i)) #define sk_SSL_CIPHER_delete_ptr(st,ptr) SKM_sk_delete_ptr(SSL_CIPHER, (st), (ptr)) #define sk_SSL_CIPHER_insert(st,val,i) SKM_sk_insert(SSL_CIPHER, (st), (val), (i)) #define sk_SSL_CIPHER_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(SSL_CIPHER, (st), (cmp)) #define sk_SSL_CIPHER_dup(st) SKM_sk_dup(SSL_CIPHER, st) #define sk_SSL_CIPHER_pop_free(st,free_func) SKM_sk_pop_free(SSL_CIPHER, (st), (free_func)) #define sk_SSL_CIPHER_shift(st) SKM_sk_shift(SSL_CIPHER, (st)) #define sk_SSL_CIPHER_pop(st) SKM_sk_pop(SSL_CIPHER, (st)) #define sk_SSL_CIPHER_sort(st) SKM_sk_sort(SSL_CIPHER, (st)) #define sk_SSL_CIPHER_is_sorted(st) SKM_sk_is_sorted(SSL_CIPHER, (st)) #define sk_SSL_COMP_new(cmp) SKM_sk_new(SSL_COMP, (cmp)) #define sk_SSL_COMP_new_null() SKM_sk_new_null(SSL_COMP) #define sk_SSL_COMP_free(st) SKM_sk_free(SSL_COMP, (st)) #define sk_SSL_COMP_num(st) SKM_sk_num(SSL_COMP, (st)) #define sk_SSL_COMP_value(st,i) SKM_sk_value(SSL_COMP, (st), (i)) #define sk_SSL_COMP_set(st,i,val) SKM_sk_set(SSL_COMP, (st), (i), (val)) #define sk_SSL_COMP_zero(st) SKM_sk_zero(SSL_COMP, (st)) #define sk_SSL_COMP_push(st,val) SKM_sk_push(SSL_COMP, (st), (val)) #define sk_SSL_COMP_unshift(st,val) SKM_sk_unshift(SSL_COMP, (st), (val)) #define sk_SSL_COMP_find(st,val) SKM_sk_find(SSL_COMP, (st), (val)) #define sk_SSL_COMP_find_ex(st,val) SKM_sk_find_ex(SSL_COMP, (st), (val)) #define sk_SSL_COMP_delete(st,i) SKM_sk_delete(SSL_COMP, (st), (i)) #define sk_SSL_COMP_delete_ptr(st,ptr) SKM_sk_delete_ptr(SSL_COMP, (st), (ptr)) #define sk_SSL_COMP_insert(st,val,i) SKM_sk_insert(SSL_COMP, (st), (val), (i)) #define sk_SSL_COMP_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(SSL_COMP, (st), (cmp)) #define sk_SSL_COMP_dup(st) SKM_sk_dup(SSL_COMP, st) #define sk_SSL_COMP_pop_free(st,free_func) SKM_sk_pop_free(SSL_COMP, (st), (free_func)) #define sk_SSL_COMP_shift(st) SKM_sk_shift(SSL_COMP, (st)) #define sk_SSL_COMP_pop(st) SKM_sk_pop(SSL_COMP, (st)) #define sk_SSL_COMP_sort(st) SKM_sk_sort(SSL_COMP, (st)) #define sk_SSL_COMP_is_sorted(st) SKM_sk_is_sorted(SSL_COMP, (st)) #define sk_STACK_OF_X509_NAME_ENTRY_new(cmp) SKM_sk_new(STACK_OF_X509_NAME_ENTRY, (cmp)) #define sk_STACK_OF_X509_NAME_ENTRY_new_null() SKM_sk_new_null(STACK_OF_X509_NAME_ENTRY) #define sk_STACK_OF_X509_NAME_ENTRY_free(st) SKM_sk_free(STACK_OF_X509_NAME_ENTRY, (st)) #define sk_STACK_OF_X509_NAME_ENTRY_num(st) SKM_sk_num(STACK_OF_X509_NAME_ENTRY, (st)) #define sk_STACK_OF_X509_NAME_ENTRY_value(st,i) SKM_sk_value(STACK_OF_X509_NAME_ENTRY, (st), (i)) #define sk_STACK_OF_X509_NAME_ENTRY_set(st,i,val) SKM_sk_set(STACK_OF_X509_NAME_ENTRY, (st), (i), (val)) #define sk_STACK_OF_X509_NAME_ENTRY_zero(st) SKM_sk_zero(STACK_OF_X509_NAME_ENTRY, (st)) #define sk_STACK_OF_X509_NAME_ENTRY_push(st,val) SKM_sk_push(STACK_OF_X509_NAME_ENTRY, (st), (val)) #define sk_STACK_OF_X509_NAME_ENTRY_unshift(st,val) SKM_sk_unshift(STACK_OF_X509_NAME_ENTRY, (st), (val)) #define sk_STACK_OF_X509_NAME_ENTRY_find(st,val) SKM_sk_find(STACK_OF_X509_NAME_ENTRY, (st), (val)) #define sk_STACK_OF_X509_NAME_ENTRY_find_ex(st,val) SKM_sk_find_ex(STACK_OF_X509_NAME_ENTRY, (st), (val)) #define sk_STACK_OF_X509_NAME_ENTRY_delete(st,i) SKM_sk_delete(STACK_OF_X509_NAME_ENTRY, (st), (i)) #define sk_STACK_OF_X509_NAME_ENTRY_delete_ptr(st,ptr) SKM_sk_delete_ptr(STACK_OF_X509_NAME_ENTRY, (st), (ptr)) #define sk_STACK_OF_X509_NAME_ENTRY_insert(st,val,i) SKM_sk_insert(STACK_OF_X509_NAME_ENTRY, (st), (val), (i)) #define sk_STACK_OF_X509_NAME_ENTRY_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(STACK_OF_X509_NAME_ENTRY, (st), (cmp)) #define sk_STACK_OF_X509_NAME_ENTRY_dup(st) SKM_sk_dup(STACK_OF_X509_NAME_ENTRY, st) #define sk_STACK_OF_X509_NAME_ENTRY_pop_free(st,free_func) SKM_sk_pop_free(STACK_OF_X509_NAME_ENTRY, (st), (free_func)) #define sk_STACK_OF_X509_NAME_ENTRY_shift(st) SKM_sk_shift(STACK_OF_X509_NAME_ENTRY, (st)) #define sk_STACK_OF_X509_NAME_ENTRY_pop(st) SKM_sk_pop(STACK_OF_X509_NAME_ENTRY, (st)) #define sk_STACK_OF_X509_NAME_ENTRY_sort(st) SKM_sk_sort(STACK_OF_X509_NAME_ENTRY, (st)) #define sk_STACK_OF_X509_NAME_ENTRY_is_sorted(st) SKM_sk_is_sorted(STACK_OF_X509_NAME_ENTRY, (st)) #define sk_STORE_ATTR_INFO_new(cmp) SKM_sk_new(STORE_ATTR_INFO, (cmp)) #define sk_STORE_ATTR_INFO_new_null() SKM_sk_new_null(STORE_ATTR_INFO) #define sk_STORE_ATTR_INFO_free(st) SKM_sk_free(STORE_ATTR_INFO, (st)) #define sk_STORE_ATTR_INFO_num(st) SKM_sk_num(STORE_ATTR_INFO, (st)) #define sk_STORE_ATTR_INFO_value(st,i) SKM_sk_value(STORE_ATTR_INFO, (st), (i)) #define sk_STORE_ATTR_INFO_set(st,i,val) SKM_sk_set(STORE_ATTR_INFO, (st), (i), (val)) #define sk_STORE_ATTR_INFO_zero(st) SKM_sk_zero(STORE_ATTR_INFO, (st)) #define sk_STORE_ATTR_INFO_push(st,val) SKM_sk_push(STORE_ATTR_INFO, (st), (val)) #define sk_STORE_ATTR_INFO_unshift(st,val) SKM_sk_unshift(STORE_ATTR_INFO, (st), (val)) #define sk_STORE_ATTR_INFO_find(st,val) SKM_sk_find(STORE_ATTR_INFO, (st), (val)) #define sk_STORE_ATTR_INFO_find_ex(st,val) SKM_sk_find_ex(STORE_ATTR_INFO, (st), (val)) #define sk_STORE_ATTR_INFO_delete(st,i) SKM_sk_delete(STORE_ATTR_INFO, (st), (i)) #define sk_STORE_ATTR_INFO_delete_ptr(st,ptr) SKM_sk_delete_ptr(STORE_ATTR_INFO, (st), (ptr)) #define sk_STORE_ATTR_INFO_insert(st,val,i) SKM_sk_insert(STORE_ATTR_INFO, (st), (val), (i)) #define sk_STORE_ATTR_INFO_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(STORE_ATTR_INFO, (st), (cmp)) #define sk_STORE_ATTR_INFO_dup(st) SKM_sk_dup(STORE_ATTR_INFO, st) #define sk_STORE_ATTR_INFO_pop_free(st,free_func) SKM_sk_pop_free(STORE_ATTR_INFO, (st), (free_func)) #define sk_STORE_ATTR_INFO_shift(st) SKM_sk_shift(STORE_ATTR_INFO, (st)) #define sk_STORE_ATTR_INFO_pop(st) SKM_sk_pop(STORE_ATTR_INFO, (st)) #define sk_STORE_ATTR_INFO_sort(st) SKM_sk_sort(STORE_ATTR_INFO, (st)) #define sk_STORE_ATTR_INFO_is_sorted(st) SKM_sk_is_sorted(STORE_ATTR_INFO, (st)) #define sk_STORE_OBJECT_new(cmp) SKM_sk_new(STORE_OBJECT, (cmp)) #define sk_STORE_OBJECT_new_null() SKM_sk_new_null(STORE_OBJECT) #define sk_STORE_OBJECT_free(st) SKM_sk_free(STORE_OBJECT, (st)) #define sk_STORE_OBJECT_num(st) SKM_sk_num(STORE_OBJECT, (st)) #define sk_STORE_OBJECT_value(st,i) SKM_sk_value(STORE_OBJECT, (st), (i)) #define sk_STORE_OBJECT_set(st,i,val) SKM_sk_set(STORE_OBJECT, (st), (i), (val)) #define sk_STORE_OBJECT_zero(st) SKM_sk_zero(STORE_OBJECT, (st)) #define sk_STORE_OBJECT_push(st,val) SKM_sk_push(STORE_OBJECT, (st), (val)) #define sk_STORE_OBJECT_unshift(st,val) SKM_sk_unshift(STORE_OBJECT, (st), (val)) #define sk_STORE_OBJECT_find(st,val) SKM_sk_find(STORE_OBJECT, (st), (val)) #define sk_STORE_OBJECT_find_ex(st,val) SKM_sk_find_ex(STORE_OBJECT, (st), (val)) #define sk_STORE_OBJECT_delete(st,i) SKM_sk_delete(STORE_OBJECT, (st), (i)) #define sk_STORE_OBJECT_delete_ptr(st,ptr) SKM_sk_delete_ptr(STORE_OBJECT, (st), (ptr)) #define sk_STORE_OBJECT_insert(st,val,i) SKM_sk_insert(STORE_OBJECT, (st), (val), (i)) #define sk_STORE_OBJECT_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(STORE_OBJECT, (st), (cmp)) #define sk_STORE_OBJECT_dup(st) SKM_sk_dup(STORE_OBJECT, st) #define sk_STORE_OBJECT_pop_free(st,free_func) SKM_sk_pop_free(STORE_OBJECT, (st), (free_func)) #define sk_STORE_OBJECT_shift(st) SKM_sk_shift(STORE_OBJECT, (st)) #define sk_STORE_OBJECT_pop(st) SKM_sk_pop(STORE_OBJECT, (st)) #define sk_STORE_OBJECT_sort(st) SKM_sk_sort(STORE_OBJECT, (st)) #define sk_STORE_OBJECT_is_sorted(st) SKM_sk_is_sorted(STORE_OBJECT, (st)) #define sk_SXNETID_new(cmp) SKM_sk_new(SXNETID, (cmp)) #define sk_SXNETID_new_null() SKM_sk_new_null(SXNETID) #define sk_SXNETID_free(st) SKM_sk_free(SXNETID, (st)) #define sk_SXNETID_num(st) SKM_sk_num(SXNETID, (st)) #define sk_SXNETID_value(st,i) SKM_sk_value(SXNETID, (st), (i)) #define sk_SXNETID_set(st,i,val) SKM_sk_set(SXNETID, (st), (i), (val)) #define sk_SXNETID_zero(st) SKM_sk_zero(SXNETID, (st)) #define sk_SXNETID_push(st,val) SKM_sk_push(SXNETID, (st), (val)) #define sk_SXNETID_unshift(st,val) SKM_sk_unshift(SXNETID, (st), (val)) #define sk_SXNETID_find(st,val) SKM_sk_find(SXNETID, (st), (val)) #define sk_SXNETID_find_ex(st,val) SKM_sk_find_ex(SXNETID, (st), (val)) #define sk_SXNETID_delete(st,i) SKM_sk_delete(SXNETID, (st), (i)) #define sk_SXNETID_delete_ptr(st,ptr) SKM_sk_delete_ptr(SXNETID, (st), (ptr)) #define sk_SXNETID_insert(st,val,i) SKM_sk_insert(SXNETID, (st), (val), (i)) #define sk_SXNETID_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(SXNETID, (st), (cmp)) #define sk_SXNETID_dup(st) SKM_sk_dup(SXNETID, st) #define sk_SXNETID_pop_free(st,free_func) SKM_sk_pop_free(SXNETID, (st), (free_func)) #define sk_SXNETID_shift(st) SKM_sk_shift(SXNETID, (st)) #define sk_SXNETID_pop(st) SKM_sk_pop(SXNETID, (st)) #define sk_SXNETID_sort(st) SKM_sk_sort(SXNETID, (st)) #define sk_SXNETID_is_sorted(st) SKM_sk_is_sorted(SXNETID, (st)) #define sk_UI_STRING_new(cmp) SKM_sk_new(UI_STRING, (cmp)) #define sk_UI_STRING_new_null() SKM_sk_new_null(UI_STRING) #define sk_UI_STRING_free(st) SKM_sk_free(UI_STRING, (st)) #define sk_UI_STRING_num(st) SKM_sk_num(UI_STRING, (st)) #define sk_UI_STRING_value(st,i) SKM_sk_value(UI_STRING, (st), (i)) #define sk_UI_STRING_set(st,i,val) SKM_sk_set(UI_STRING, (st), (i), (val)) #define sk_UI_STRING_zero(st) SKM_sk_zero(UI_STRING, (st)) #define sk_UI_STRING_push(st,val) SKM_sk_push(UI_STRING, (st), (val)) #define sk_UI_STRING_unshift(st,val) SKM_sk_unshift(UI_STRING, (st), (val)) #define sk_UI_STRING_find(st,val) SKM_sk_find(UI_STRING, (st), (val)) #define sk_UI_STRING_find_ex(st,val) SKM_sk_find_ex(UI_STRING, (st), (val)) #define sk_UI_STRING_delete(st,i) SKM_sk_delete(UI_STRING, (st), (i)) #define sk_UI_STRING_delete_ptr(st,ptr) SKM_sk_delete_ptr(UI_STRING, (st), (ptr)) #define sk_UI_STRING_insert(st,val,i) SKM_sk_insert(UI_STRING, (st), (val), (i)) #define sk_UI_STRING_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(UI_STRING, (st), (cmp)) #define sk_UI_STRING_dup(st) SKM_sk_dup(UI_STRING, st) #define sk_UI_STRING_pop_free(st,free_func) SKM_sk_pop_free(UI_STRING, (st), (free_func)) #define sk_UI_STRING_shift(st) SKM_sk_shift(UI_STRING, (st)) #define sk_UI_STRING_pop(st) SKM_sk_pop(UI_STRING, (st)) #define sk_UI_STRING_sort(st) SKM_sk_sort(UI_STRING, (st)) #define sk_UI_STRING_is_sorted(st) SKM_sk_is_sorted(UI_STRING, (st)) #define sk_X509_new(cmp) SKM_sk_new(X509, (cmp)) #define sk_X509_new_null() SKM_sk_new_null(X509) #define sk_X509_free(st) SKM_sk_free(X509, (st)) #define sk_X509_num(st) SKM_sk_num(X509, (st)) #define sk_X509_value(st,i) SKM_sk_value(X509, (st), (i)) #define sk_X509_set(st,i,val) SKM_sk_set(X509, (st), (i), (val)) #define sk_X509_zero(st) SKM_sk_zero(X509, (st)) #define sk_X509_push(st,val) SKM_sk_push(X509, (st), (val)) #define sk_X509_unshift(st,val) SKM_sk_unshift(X509, (st), (val)) #define sk_X509_find(st,val) SKM_sk_find(X509, (st), (val)) #define sk_X509_find_ex(st,val) SKM_sk_find_ex(X509, (st), (val)) #define sk_X509_delete(st,i) SKM_sk_delete(X509, (st), (i)) #define sk_X509_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509, (st), (ptr)) #define sk_X509_insert(st,val,i) SKM_sk_insert(X509, (st), (val), (i)) #define sk_X509_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509, (st), (cmp)) #define sk_X509_dup(st) SKM_sk_dup(X509, st) #define sk_X509_pop_free(st,free_func) SKM_sk_pop_free(X509, (st), (free_func)) #define sk_X509_shift(st) SKM_sk_shift(X509, (st)) #define sk_X509_pop(st) SKM_sk_pop(X509, (st)) #define sk_X509_sort(st) SKM_sk_sort(X509, (st)) #define sk_X509_is_sorted(st) SKM_sk_is_sorted(X509, (st)) #define sk_X509V3_EXT_METHOD_new(cmp) SKM_sk_new(X509V3_EXT_METHOD, (cmp)) #define sk_X509V3_EXT_METHOD_new_null() SKM_sk_new_null(X509V3_EXT_METHOD) #define sk_X509V3_EXT_METHOD_free(st) SKM_sk_free(X509V3_EXT_METHOD, (st)) #define sk_X509V3_EXT_METHOD_num(st) SKM_sk_num(X509V3_EXT_METHOD, (st)) #define sk_X509V3_EXT_METHOD_value(st,i) SKM_sk_value(X509V3_EXT_METHOD, (st), (i)) #define sk_X509V3_EXT_METHOD_set(st,i,val) SKM_sk_set(X509V3_EXT_METHOD, (st), (i), (val)) #define sk_X509V3_EXT_METHOD_zero(st) SKM_sk_zero(X509V3_EXT_METHOD, (st)) #define sk_X509V3_EXT_METHOD_push(st,val) SKM_sk_push(X509V3_EXT_METHOD, (st), (val)) #define sk_X509V3_EXT_METHOD_unshift(st,val) SKM_sk_unshift(X509V3_EXT_METHOD, (st), (val)) #define sk_X509V3_EXT_METHOD_find(st,val) SKM_sk_find(X509V3_EXT_METHOD, (st), (val)) #define sk_X509V3_EXT_METHOD_find_ex(st,val) SKM_sk_find_ex(X509V3_EXT_METHOD, (st), (val)) #define sk_X509V3_EXT_METHOD_delete(st,i) SKM_sk_delete(X509V3_EXT_METHOD, (st), (i)) #define sk_X509V3_EXT_METHOD_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509V3_EXT_METHOD, (st), (ptr)) #define sk_X509V3_EXT_METHOD_insert(st,val,i) SKM_sk_insert(X509V3_EXT_METHOD, (st), (val), (i)) #define sk_X509V3_EXT_METHOD_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509V3_EXT_METHOD, (st), (cmp)) #define sk_X509V3_EXT_METHOD_dup(st) SKM_sk_dup(X509V3_EXT_METHOD, st) #define sk_X509V3_EXT_METHOD_pop_free(st,free_func) SKM_sk_pop_free(X509V3_EXT_METHOD, (st), (free_func)) #define sk_X509V3_EXT_METHOD_shift(st) SKM_sk_shift(X509V3_EXT_METHOD, (st)) #define sk_X509V3_EXT_METHOD_pop(st) SKM_sk_pop(X509V3_EXT_METHOD, (st)) #define sk_X509V3_EXT_METHOD_sort(st) SKM_sk_sort(X509V3_EXT_METHOD, (st)) #define sk_X509V3_EXT_METHOD_is_sorted(st) SKM_sk_is_sorted(X509V3_EXT_METHOD, (st)) #define sk_X509_ALGOR_new(cmp) SKM_sk_new(X509_ALGOR, (cmp)) #define sk_X509_ALGOR_new_null() SKM_sk_new_null(X509_ALGOR) #define sk_X509_ALGOR_free(st) SKM_sk_free(X509_ALGOR, (st)) #define sk_X509_ALGOR_num(st) SKM_sk_num(X509_ALGOR, (st)) #define sk_X509_ALGOR_value(st,i) SKM_sk_value(X509_ALGOR, (st), (i)) #define sk_X509_ALGOR_set(st,i,val) SKM_sk_set(X509_ALGOR, (st), (i), (val)) #define sk_X509_ALGOR_zero(st) SKM_sk_zero(X509_ALGOR, (st)) #define sk_X509_ALGOR_push(st,val) SKM_sk_push(X509_ALGOR, (st), (val)) #define sk_X509_ALGOR_unshift(st,val) SKM_sk_unshift(X509_ALGOR, (st), (val)) #define sk_X509_ALGOR_find(st,val) SKM_sk_find(X509_ALGOR, (st), (val)) #define sk_X509_ALGOR_find_ex(st,val) SKM_sk_find_ex(X509_ALGOR, (st), (val)) #define sk_X509_ALGOR_delete(st,i) SKM_sk_delete(X509_ALGOR, (st), (i)) #define sk_X509_ALGOR_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_ALGOR, (st), (ptr)) #define sk_X509_ALGOR_insert(st,val,i) SKM_sk_insert(X509_ALGOR, (st), (val), (i)) #define sk_X509_ALGOR_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_ALGOR, (st), (cmp)) #define sk_X509_ALGOR_dup(st) SKM_sk_dup(X509_ALGOR, st) #define sk_X509_ALGOR_pop_free(st,free_func) SKM_sk_pop_free(X509_ALGOR, (st), (free_func)) #define sk_X509_ALGOR_shift(st) SKM_sk_shift(X509_ALGOR, (st)) #define sk_X509_ALGOR_pop(st) SKM_sk_pop(X509_ALGOR, (st)) #define sk_X509_ALGOR_sort(st) SKM_sk_sort(X509_ALGOR, (st)) #define sk_X509_ALGOR_is_sorted(st) SKM_sk_is_sorted(X509_ALGOR, (st)) #define sk_X509_ATTRIBUTE_new(cmp) SKM_sk_new(X509_ATTRIBUTE, (cmp)) #define sk_X509_ATTRIBUTE_new_null() SKM_sk_new_null(X509_ATTRIBUTE) #define sk_X509_ATTRIBUTE_free(st) SKM_sk_free(X509_ATTRIBUTE, (st)) #define sk_X509_ATTRIBUTE_num(st) SKM_sk_num(X509_ATTRIBUTE, (st)) #define sk_X509_ATTRIBUTE_value(st,i) SKM_sk_value(X509_ATTRIBUTE, (st), (i)) #define sk_X509_ATTRIBUTE_set(st,i,val) SKM_sk_set(X509_ATTRIBUTE, (st), (i), (val)) #define sk_X509_ATTRIBUTE_zero(st) SKM_sk_zero(X509_ATTRIBUTE, (st)) #define sk_X509_ATTRIBUTE_push(st,val) SKM_sk_push(X509_ATTRIBUTE, (st), (val)) #define sk_X509_ATTRIBUTE_unshift(st,val) SKM_sk_unshift(X509_ATTRIBUTE, (st), (val)) #define sk_X509_ATTRIBUTE_find(st,val) SKM_sk_find(X509_ATTRIBUTE, (st), (val)) #define sk_X509_ATTRIBUTE_find_ex(st,val) SKM_sk_find_ex(X509_ATTRIBUTE, (st), (val)) #define sk_X509_ATTRIBUTE_delete(st,i) SKM_sk_delete(X509_ATTRIBUTE, (st), (i)) #define sk_X509_ATTRIBUTE_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_ATTRIBUTE, (st), (ptr)) #define sk_X509_ATTRIBUTE_insert(st,val,i) SKM_sk_insert(X509_ATTRIBUTE, (st), (val), (i)) #define sk_X509_ATTRIBUTE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_ATTRIBUTE, (st), (cmp)) #define sk_X509_ATTRIBUTE_dup(st) SKM_sk_dup(X509_ATTRIBUTE, st) #define sk_X509_ATTRIBUTE_pop_free(st,free_func) SKM_sk_pop_free(X509_ATTRIBUTE, (st), (free_func)) #define sk_X509_ATTRIBUTE_shift(st) SKM_sk_shift(X509_ATTRIBUTE, (st)) #define sk_X509_ATTRIBUTE_pop(st) SKM_sk_pop(X509_ATTRIBUTE, (st)) #define sk_X509_ATTRIBUTE_sort(st) SKM_sk_sort(X509_ATTRIBUTE, (st)) #define sk_X509_ATTRIBUTE_is_sorted(st) SKM_sk_is_sorted(X509_ATTRIBUTE, (st)) #define sk_X509_CRL_new(cmp) SKM_sk_new(X509_CRL, (cmp)) #define sk_X509_CRL_new_null() SKM_sk_new_null(X509_CRL) #define sk_X509_CRL_free(st) SKM_sk_free(X509_CRL, (st)) #define sk_X509_CRL_num(st) SKM_sk_num(X509_CRL, (st)) #define sk_X509_CRL_value(st,i) SKM_sk_value(X509_CRL, (st), (i)) #define sk_X509_CRL_set(st,i,val) SKM_sk_set(X509_CRL, (st), (i), (val)) #define sk_X509_CRL_zero(st) SKM_sk_zero(X509_CRL, (st)) #define sk_X509_CRL_push(st,val) SKM_sk_push(X509_CRL, (st), (val)) #define sk_X509_CRL_unshift(st,val) SKM_sk_unshift(X509_CRL, (st), (val)) #define sk_X509_CRL_find(st,val) SKM_sk_find(X509_CRL, (st), (val)) #define sk_X509_CRL_find_ex(st,val) SKM_sk_find_ex(X509_CRL, (st), (val)) #define sk_X509_CRL_delete(st,i) SKM_sk_delete(X509_CRL, (st), (i)) #define sk_X509_CRL_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_CRL, (st), (ptr)) #define sk_X509_CRL_insert(st,val,i) SKM_sk_insert(X509_CRL, (st), (val), (i)) #define sk_X509_CRL_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_CRL, (st), (cmp)) #define sk_X509_CRL_dup(st) SKM_sk_dup(X509_CRL, st) #define sk_X509_CRL_pop_free(st,free_func) SKM_sk_pop_free(X509_CRL, (st), (free_func)) #define sk_X509_CRL_shift(st) SKM_sk_shift(X509_CRL, (st)) #define sk_X509_CRL_pop(st) SKM_sk_pop(X509_CRL, (st)) #define sk_X509_CRL_sort(st) SKM_sk_sort(X509_CRL, (st)) #define sk_X509_CRL_is_sorted(st) SKM_sk_is_sorted(X509_CRL, (st)) #define sk_X509_EXTENSION_new(cmp) SKM_sk_new(X509_EXTENSION, (cmp)) #define sk_X509_EXTENSION_new_null() SKM_sk_new_null(X509_EXTENSION) #define sk_X509_EXTENSION_free(st) SKM_sk_free(X509_EXTENSION, (st)) #define sk_X509_EXTENSION_num(st) SKM_sk_num(X509_EXTENSION, (st)) #define sk_X509_EXTENSION_value(st,i) SKM_sk_value(X509_EXTENSION, (st), (i)) #define sk_X509_EXTENSION_set(st,i,val) SKM_sk_set(X509_EXTENSION, (st), (i), (val)) #define sk_X509_EXTENSION_zero(st) SKM_sk_zero(X509_EXTENSION, (st)) #define sk_X509_EXTENSION_push(st,val) SKM_sk_push(X509_EXTENSION, (st), (val)) #define sk_X509_EXTENSION_unshift(st,val) SKM_sk_unshift(X509_EXTENSION, (st), (val)) #define sk_X509_EXTENSION_find(st,val) SKM_sk_find(X509_EXTENSION, (st), (val)) #define sk_X509_EXTENSION_find_ex(st,val) SKM_sk_find_ex(X509_EXTENSION, (st), (val)) #define sk_X509_EXTENSION_delete(st,i) SKM_sk_delete(X509_EXTENSION, (st), (i)) #define sk_X509_EXTENSION_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_EXTENSION, (st), (ptr)) #define sk_X509_EXTENSION_insert(st,val,i) SKM_sk_insert(X509_EXTENSION, (st), (val), (i)) #define sk_X509_EXTENSION_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_EXTENSION, (st), (cmp)) #define sk_X509_EXTENSION_dup(st) SKM_sk_dup(X509_EXTENSION, st) #define sk_X509_EXTENSION_pop_free(st,free_func) SKM_sk_pop_free(X509_EXTENSION, (st), (free_func)) #define sk_X509_EXTENSION_shift(st) SKM_sk_shift(X509_EXTENSION, (st)) #define sk_X509_EXTENSION_pop(st) SKM_sk_pop(X509_EXTENSION, (st)) #define sk_X509_EXTENSION_sort(st) SKM_sk_sort(X509_EXTENSION, (st)) #define sk_X509_EXTENSION_is_sorted(st) SKM_sk_is_sorted(X509_EXTENSION, (st)) #define sk_X509_INFO_new(cmp) SKM_sk_new(X509_INFO, (cmp)) #define sk_X509_INFO_new_null() SKM_sk_new_null(X509_INFO) #define sk_X509_INFO_free(st) SKM_sk_free(X509_INFO, (st)) #define sk_X509_INFO_num(st) SKM_sk_num(X509_INFO, (st)) #define sk_X509_INFO_value(st,i) SKM_sk_value(X509_INFO, (st), (i)) #define sk_X509_INFO_set(st,i,val) SKM_sk_set(X509_INFO, (st), (i), (val)) #define sk_X509_INFO_zero(st) SKM_sk_zero(X509_INFO, (st)) #define sk_X509_INFO_push(st,val) SKM_sk_push(X509_INFO, (st), (val)) #define sk_X509_INFO_unshift(st,val) SKM_sk_unshift(X509_INFO, (st), (val)) #define sk_X509_INFO_find(st,val) SKM_sk_find(X509_INFO, (st), (val)) #define sk_X509_INFO_find_ex(st,val) SKM_sk_find_ex(X509_INFO, (st), (val)) #define sk_X509_INFO_delete(st,i) SKM_sk_delete(X509_INFO, (st), (i)) #define sk_X509_INFO_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_INFO, (st), (ptr)) #define sk_X509_INFO_insert(st,val,i) SKM_sk_insert(X509_INFO, (st), (val), (i)) #define sk_X509_INFO_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_INFO, (st), (cmp)) #define sk_X509_INFO_dup(st) SKM_sk_dup(X509_INFO, st) #define sk_X509_INFO_pop_free(st,free_func) SKM_sk_pop_free(X509_INFO, (st), (free_func)) #define sk_X509_INFO_shift(st) SKM_sk_shift(X509_INFO, (st)) #define sk_X509_INFO_pop(st) SKM_sk_pop(X509_INFO, (st)) #define sk_X509_INFO_sort(st) SKM_sk_sort(X509_INFO, (st)) #define sk_X509_INFO_is_sorted(st) SKM_sk_is_sorted(X509_INFO, (st)) #define sk_X509_LOOKUP_new(cmp) SKM_sk_new(X509_LOOKUP, (cmp)) #define sk_X509_LOOKUP_new_null() SKM_sk_new_null(X509_LOOKUP) #define sk_X509_LOOKUP_free(st) SKM_sk_free(X509_LOOKUP, (st)) #define sk_X509_LOOKUP_num(st) SKM_sk_num(X509_LOOKUP, (st)) #define sk_X509_LOOKUP_value(st,i) SKM_sk_value(X509_LOOKUP, (st), (i)) #define sk_X509_LOOKUP_set(st,i,val) SKM_sk_set(X509_LOOKUP, (st), (i), (val)) #define sk_X509_LOOKUP_zero(st) SKM_sk_zero(X509_LOOKUP, (st)) #define sk_X509_LOOKUP_push(st,val) SKM_sk_push(X509_LOOKUP, (st), (val)) #define sk_X509_LOOKUP_unshift(st,val) SKM_sk_unshift(X509_LOOKUP, (st), (val)) #define sk_X509_LOOKUP_find(st,val) SKM_sk_find(X509_LOOKUP, (st), (val)) #define sk_X509_LOOKUP_find_ex(st,val) SKM_sk_find_ex(X509_LOOKUP, (st), (val)) #define sk_X509_LOOKUP_delete(st,i) SKM_sk_delete(X509_LOOKUP, (st), (i)) #define sk_X509_LOOKUP_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_LOOKUP, (st), (ptr)) #define sk_X509_LOOKUP_insert(st,val,i) SKM_sk_insert(X509_LOOKUP, (st), (val), (i)) #define sk_X509_LOOKUP_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_LOOKUP, (st), (cmp)) #define sk_X509_LOOKUP_dup(st) SKM_sk_dup(X509_LOOKUP, st) #define sk_X509_LOOKUP_pop_free(st,free_func) SKM_sk_pop_free(X509_LOOKUP, (st), (free_func)) #define sk_X509_LOOKUP_shift(st) SKM_sk_shift(X509_LOOKUP, (st)) #define sk_X509_LOOKUP_pop(st) SKM_sk_pop(X509_LOOKUP, (st)) #define sk_X509_LOOKUP_sort(st) SKM_sk_sort(X509_LOOKUP, (st)) #define sk_X509_LOOKUP_is_sorted(st) SKM_sk_is_sorted(X509_LOOKUP, (st)) #define sk_X509_NAME_new(cmp) SKM_sk_new(X509_NAME, (cmp)) #define sk_X509_NAME_new_null() SKM_sk_new_null(X509_NAME) #define sk_X509_NAME_free(st) SKM_sk_free(X509_NAME, (st)) #define sk_X509_NAME_num(st) SKM_sk_num(X509_NAME, (st)) #define sk_X509_NAME_value(st,i) SKM_sk_value(X509_NAME, (st), (i)) #define sk_X509_NAME_set(st,i,val) SKM_sk_set(X509_NAME, (st), (i), (val)) #define sk_X509_NAME_zero(st) SKM_sk_zero(X509_NAME, (st)) #define sk_X509_NAME_push(st,val) SKM_sk_push(X509_NAME, (st), (val)) #define sk_X509_NAME_unshift(st,val) SKM_sk_unshift(X509_NAME, (st), (val)) #define sk_X509_NAME_find(st,val) SKM_sk_find(X509_NAME, (st), (val)) #define sk_X509_NAME_find_ex(st,val) SKM_sk_find_ex(X509_NAME, (st), (val)) #define sk_X509_NAME_delete(st,i) SKM_sk_delete(X509_NAME, (st), (i)) #define sk_X509_NAME_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_NAME, (st), (ptr)) #define sk_X509_NAME_insert(st,val,i) SKM_sk_insert(X509_NAME, (st), (val), (i)) #define sk_X509_NAME_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_NAME, (st), (cmp)) #define sk_X509_NAME_dup(st) SKM_sk_dup(X509_NAME, st) #define sk_X509_NAME_pop_free(st,free_func) SKM_sk_pop_free(X509_NAME, (st), (free_func)) #define sk_X509_NAME_shift(st) SKM_sk_shift(X509_NAME, (st)) #define sk_X509_NAME_pop(st) SKM_sk_pop(X509_NAME, (st)) #define sk_X509_NAME_sort(st) SKM_sk_sort(X509_NAME, (st)) #define sk_X509_NAME_is_sorted(st) SKM_sk_is_sorted(X509_NAME, (st)) #define sk_X509_NAME_ENTRY_new(cmp) SKM_sk_new(X509_NAME_ENTRY, (cmp)) #define sk_X509_NAME_ENTRY_new_null() SKM_sk_new_null(X509_NAME_ENTRY) #define sk_X509_NAME_ENTRY_free(st) SKM_sk_free(X509_NAME_ENTRY, (st)) #define sk_X509_NAME_ENTRY_num(st) SKM_sk_num(X509_NAME_ENTRY, (st)) #define sk_X509_NAME_ENTRY_value(st,i) SKM_sk_value(X509_NAME_ENTRY, (st), (i)) #define sk_X509_NAME_ENTRY_set(st,i,val) SKM_sk_set(X509_NAME_ENTRY, (st), (i), (val)) #define sk_X509_NAME_ENTRY_zero(st) SKM_sk_zero(X509_NAME_ENTRY, (st)) #define sk_X509_NAME_ENTRY_push(st,val) SKM_sk_push(X509_NAME_ENTRY, (st), (val)) #define sk_X509_NAME_ENTRY_unshift(st,val) SKM_sk_unshift(X509_NAME_ENTRY, (st), (val)) #define sk_X509_NAME_ENTRY_find(st,val) SKM_sk_find(X509_NAME_ENTRY, (st), (val)) #define sk_X509_NAME_ENTRY_find_ex(st,val) SKM_sk_find_ex(X509_NAME_ENTRY, (st), (val)) #define sk_X509_NAME_ENTRY_delete(st,i) SKM_sk_delete(X509_NAME_ENTRY, (st), (i)) #define sk_X509_NAME_ENTRY_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_NAME_ENTRY, (st), (ptr)) #define sk_X509_NAME_ENTRY_insert(st,val,i) SKM_sk_insert(X509_NAME_ENTRY, (st), (val), (i)) #define sk_X509_NAME_ENTRY_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_NAME_ENTRY, (st), (cmp)) #define sk_X509_NAME_ENTRY_dup(st) SKM_sk_dup(X509_NAME_ENTRY, st) #define sk_X509_NAME_ENTRY_pop_free(st,free_func) SKM_sk_pop_free(X509_NAME_ENTRY, (st), (free_func)) #define sk_X509_NAME_ENTRY_shift(st) SKM_sk_shift(X509_NAME_ENTRY, (st)) #define sk_X509_NAME_ENTRY_pop(st) SKM_sk_pop(X509_NAME_ENTRY, (st)) #define sk_X509_NAME_ENTRY_sort(st) SKM_sk_sort(X509_NAME_ENTRY, (st)) #define sk_X509_NAME_ENTRY_is_sorted(st) SKM_sk_is_sorted(X509_NAME_ENTRY, (st)) #define sk_X509_OBJECT_new(cmp) SKM_sk_new(X509_OBJECT, (cmp)) #define sk_X509_OBJECT_new_null() SKM_sk_new_null(X509_OBJECT) #define sk_X509_OBJECT_free(st) SKM_sk_free(X509_OBJECT, (st)) #define sk_X509_OBJECT_num(st) SKM_sk_num(X509_OBJECT, (st)) #define sk_X509_OBJECT_value(st,i) SKM_sk_value(X509_OBJECT, (st), (i)) #define sk_X509_OBJECT_set(st,i,val) SKM_sk_set(X509_OBJECT, (st), (i), (val)) #define sk_X509_OBJECT_zero(st) SKM_sk_zero(X509_OBJECT, (st)) #define sk_X509_OBJECT_push(st,val) SKM_sk_push(X509_OBJECT, (st), (val)) #define sk_X509_OBJECT_unshift(st,val) SKM_sk_unshift(X509_OBJECT, (st), (val)) #define sk_X509_OBJECT_find(st,val) SKM_sk_find(X509_OBJECT, (st), (val)) #define sk_X509_OBJECT_find_ex(st,val) SKM_sk_find_ex(X509_OBJECT, (st), (val)) #define sk_X509_OBJECT_delete(st,i) SKM_sk_delete(X509_OBJECT, (st), (i)) #define sk_X509_OBJECT_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_OBJECT, (st), (ptr)) #define sk_X509_OBJECT_insert(st,val,i) SKM_sk_insert(X509_OBJECT, (st), (val), (i)) #define sk_X509_OBJECT_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_OBJECT, (st), (cmp)) #define sk_X509_OBJECT_dup(st) SKM_sk_dup(X509_OBJECT, st) #define sk_X509_OBJECT_pop_free(st,free_func) SKM_sk_pop_free(X509_OBJECT, (st), (free_func)) #define sk_X509_OBJECT_shift(st) SKM_sk_shift(X509_OBJECT, (st)) #define sk_X509_OBJECT_pop(st) SKM_sk_pop(X509_OBJECT, (st)) #define sk_X509_OBJECT_sort(st) SKM_sk_sort(X509_OBJECT, (st)) #define sk_X509_OBJECT_is_sorted(st) SKM_sk_is_sorted(X509_OBJECT, (st)) #define sk_X509_POLICY_DATA_new(cmp) SKM_sk_new(X509_POLICY_DATA, (cmp)) #define sk_X509_POLICY_DATA_new_null() SKM_sk_new_null(X509_POLICY_DATA) #define sk_X509_POLICY_DATA_free(st) SKM_sk_free(X509_POLICY_DATA, (st)) #define sk_X509_POLICY_DATA_num(st) SKM_sk_num(X509_POLICY_DATA, (st)) #define sk_X509_POLICY_DATA_value(st,i) SKM_sk_value(X509_POLICY_DATA, (st), (i)) #define sk_X509_POLICY_DATA_set(st,i,val) SKM_sk_set(X509_POLICY_DATA, (st), (i), (val)) #define sk_X509_POLICY_DATA_zero(st) SKM_sk_zero(X509_POLICY_DATA, (st)) #define sk_X509_POLICY_DATA_push(st,val) SKM_sk_push(X509_POLICY_DATA, (st), (val)) #define sk_X509_POLICY_DATA_unshift(st,val) SKM_sk_unshift(X509_POLICY_DATA, (st), (val)) #define sk_X509_POLICY_DATA_find(st,val) SKM_sk_find(X509_POLICY_DATA, (st), (val)) #define sk_X509_POLICY_DATA_find_ex(st,val) SKM_sk_find_ex(X509_POLICY_DATA, (st), (val)) #define sk_X509_POLICY_DATA_delete(st,i) SKM_sk_delete(X509_POLICY_DATA, (st), (i)) #define sk_X509_POLICY_DATA_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_POLICY_DATA, (st), (ptr)) #define sk_X509_POLICY_DATA_insert(st,val,i) SKM_sk_insert(X509_POLICY_DATA, (st), (val), (i)) #define sk_X509_POLICY_DATA_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_POLICY_DATA, (st), (cmp)) #define sk_X509_POLICY_DATA_dup(st) SKM_sk_dup(X509_POLICY_DATA, st) #define sk_X509_POLICY_DATA_pop_free(st,free_func) SKM_sk_pop_free(X509_POLICY_DATA, (st), (free_func)) #define sk_X509_POLICY_DATA_shift(st) SKM_sk_shift(X509_POLICY_DATA, (st)) #define sk_X509_POLICY_DATA_pop(st) SKM_sk_pop(X509_POLICY_DATA, (st)) #define sk_X509_POLICY_DATA_sort(st) SKM_sk_sort(X509_POLICY_DATA, (st)) #define sk_X509_POLICY_DATA_is_sorted(st) SKM_sk_is_sorted(X509_POLICY_DATA, (st)) #define sk_X509_POLICY_NODE_new(cmp) SKM_sk_new(X509_POLICY_NODE, (cmp)) #define sk_X509_POLICY_NODE_new_null() SKM_sk_new_null(X509_POLICY_NODE) #define sk_X509_POLICY_NODE_free(st) SKM_sk_free(X509_POLICY_NODE, (st)) #define sk_X509_POLICY_NODE_num(st) SKM_sk_num(X509_POLICY_NODE, (st)) #define sk_X509_POLICY_NODE_value(st,i) SKM_sk_value(X509_POLICY_NODE, (st), (i)) #define sk_X509_POLICY_NODE_set(st,i,val) SKM_sk_set(X509_POLICY_NODE, (st), (i), (val)) #define sk_X509_POLICY_NODE_zero(st) SKM_sk_zero(X509_POLICY_NODE, (st)) #define sk_X509_POLICY_NODE_push(st,val) SKM_sk_push(X509_POLICY_NODE, (st), (val)) #define sk_X509_POLICY_NODE_unshift(st,val) SKM_sk_unshift(X509_POLICY_NODE, (st), (val)) #define sk_X509_POLICY_NODE_find(st,val) SKM_sk_find(X509_POLICY_NODE, (st), (val)) #define sk_X509_POLICY_NODE_find_ex(st,val) SKM_sk_find_ex(X509_POLICY_NODE, (st), (val)) #define sk_X509_POLICY_NODE_delete(st,i) SKM_sk_delete(X509_POLICY_NODE, (st), (i)) #define sk_X509_POLICY_NODE_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_POLICY_NODE, (st), (ptr)) #define sk_X509_POLICY_NODE_insert(st,val,i) SKM_sk_insert(X509_POLICY_NODE, (st), (val), (i)) #define sk_X509_POLICY_NODE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_POLICY_NODE, (st), (cmp)) #define sk_X509_POLICY_NODE_dup(st) SKM_sk_dup(X509_POLICY_NODE, st) #define sk_X509_POLICY_NODE_pop_free(st,free_func) SKM_sk_pop_free(X509_POLICY_NODE, (st), (free_func)) #define sk_X509_POLICY_NODE_shift(st) SKM_sk_shift(X509_POLICY_NODE, (st)) #define sk_X509_POLICY_NODE_pop(st) SKM_sk_pop(X509_POLICY_NODE, (st)) #define sk_X509_POLICY_NODE_sort(st) SKM_sk_sort(X509_POLICY_NODE, (st)) #define sk_X509_POLICY_NODE_is_sorted(st) SKM_sk_is_sorted(X509_POLICY_NODE, (st)) #define sk_X509_PURPOSE_new(cmp) SKM_sk_new(X509_PURPOSE, (cmp)) #define sk_X509_PURPOSE_new_null() SKM_sk_new_null(X509_PURPOSE) #define sk_X509_PURPOSE_free(st) SKM_sk_free(X509_PURPOSE, (st)) #define sk_X509_PURPOSE_num(st) SKM_sk_num(X509_PURPOSE, (st)) #define sk_X509_PURPOSE_value(st,i) SKM_sk_value(X509_PURPOSE, (st), (i)) #define sk_X509_PURPOSE_set(st,i,val) SKM_sk_set(X509_PURPOSE, (st), (i), (val)) #define sk_X509_PURPOSE_zero(st) SKM_sk_zero(X509_PURPOSE, (st)) #define sk_X509_PURPOSE_push(st,val) SKM_sk_push(X509_PURPOSE, (st), (val)) #define sk_X509_PURPOSE_unshift(st,val) SKM_sk_unshift(X509_PURPOSE, (st), (val)) #define sk_X509_PURPOSE_find(st,val) SKM_sk_find(X509_PURPOSE, (st), (val)) #define sk_X509_PURPOSE_find_ex(st,val) SKM_sk_find_ex(X509_PURPOSE, (st), (val)) #define sk_X509_PURPOSE_delete(st,i) SKM_sk_delete(X509_PURPOSE, (st), (i)) #define sk_X509_PURPOSE_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_PURPOSE, (st), (ptr)) #define sk_X509_PURPOSE_insert(st,val,i) SKM_sk_insert(X509_PURPOSE, (st), (val), (i)) #define sk_X509_PURPOSE_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_PURPOSE, (st), (cmp)) #define sk_X509_PURPOSE_dup(st) SKM_sk_dup(X509_PURPOSE, st) #define sk_X509_PURPOSE_pop_free(st,free_func) SKM_sk_pop_free(X509_PURPOSE, (st), (free_func)) #define sk_X509_PURPOSE_shift(st) SKM_sk_shift(X509_PURPOSE, (st)) #define sk_X509_PURPOSE_pop(st) SKM_sk_pop(X509_PURPOSE, (st)) #define sk_X509_PURPOSE_sort(st) SKM_sk_sort(X509_PURPOSE, (st)) #define sk_X509_PURPOSE_is_sorted(st) SKM_sk_is_sorted(X509_PURPOSE, (st)) #define sk_X509_REVOKED_new(cmp) SKM_sk_new(X509_REVOKED, (cmp)) #define sk_X509_REVOKED_new_null() SKM_sk_new_null(X509_REVOKED) #define sk_X509_REVOKED_free(st) SKM_sk_free(X509_REVOKED, (st)) #define sk_X509_REVOKED_num(st) SKM_sk_num(X509_REVOKED, (st)) #define sk_X509_REVOKED_value(st,i) SKM_sk_value(X509_REVOKED, (st), (i)) #define sk_X509_REVOKED_set(st,i,val) SKM_sk_set(X509_REVOKED, (st), (i), (val)) #define sk_X509_REVOKED_zero(st) SKM_sk_zero(X509_REVOKED, (st)) #define sk_X509_REVOKED_push(st,val) SKM_sk_push(X509_REVOKED, (st), (val)) #define sk_X509_REVOKED_unshift(st,val) SKM_sk_unshift(X509_REVOKED, (st), (val)) #define sk_X509_REVOKED_find(st,val) SKM_sk_find(X509_REVOKED, (st), (val)) #define sk_X509_REVOKED_find_ex(st,val) SKM_sk_find_ex(X509_REVOKED, (st), (val)) #define sk_X509_REVOKED_delete(st,i) SKM_sk_delete(X509_REVOKED, (st), (i)) #define sk_X509_REVOKED_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_REVOKED, (st), (ptr)) #define sk_X509_REVOKED_insert(st,val,i) SKM_sk_insert(X509_REVOKED, (st), (val), (i)) #define sk_X509_REVOKED_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_REVOKED, (st), (cmp)) #define sk_X509_REVOKED_dup(st) SKM_sk_dup(X509_REVOKED, st) #define sk_X509_REVOKED_pop_free(st,free_func) SKM_sk_pop_free(X509_REVOKED, (st), (free_func)) #define sk_X509_REVOKED_shift(st) SKM_sk_shift(X509_REVOKED, (st)) #define sk_X509_REVOKED_pop(st) SKM_sk_pop(X509_REVOKED, (st)) #define sk_X509_REVOKED_sort(st) SKM_sk_sort(X509_REVOKED, (st)) #define sk_X509_REVOKED_is_sorted(st) SKM_sk_is_sorted(X509_REVOKED, (st)) #define sk_X509_TRUST_new(cmp) SKM_sk_new(X509_TRUST, (cmp)) #define sk_X509_TRUST_new_null() SKM_sk_new_null(X509_TRUST) #define sk_X509_TRUST_free(st) SKM_sk_free(X509_TRUST, (st)) #define sk_X509_TRUST_num(st) SKM_sk_num(X509_TRUST, (st)) #define sk_X509_TRUST_value(st,i) SKM_sk_value(X509_TRUST, (st), (i)) #define sk_X509_TRUST_set(st,i,val) SKM_sk_set(X509_TRUST, (st), (i), (val)) #define sk_X509_TRUST_zero(st) SKM_sk_zero(X509_TRUST, (st)) #define sk_X509_TRUST_push(st,val) SKM_sk_push(X509_TRUST, (st), (val)) #define sk_X509_TRUST_unshift(st,val) SKM_sk_unshift(X509_TRUST, (st), (val)) #define sk_X509_TRUST_find(st,val) SKM_sk_find(X509_TRUST, (st), (val)) #define sk_X509_TRUST_find_ex(st,val) SKM_sk_find_ex(X509_TRUST, (st), (val)) #define sk_X509_TRUST_delete(st,i) SKM_sk_delete(X509_TRUST, (st), (i)) #define sk_X509_TRUST_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_TRUST, (st), (ptr)) #define sk_X509_TRUST_insert(st,val,i) SKM_sk_insert(X509_TRUST, (st), (val), (i)) #define sk_X509_TRUST_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_TRUST, (st), (cmp)) #define sk_X509_TRUST_dup(st) SKM_sk_dup(X509_TRUST, st) #define sk_X509_TRUST_pop_free(st,free_func) SKM_sk_pop_free(X509_TRUST, (st), (free_func)) #define sk_X509_TRUST_shift(st) SKM_sk_shift(X509_TRUST, (st)) #define sk_X509_TRUST_pop(st) SKM_sk_pop(X509_TRUST, (st)) #define sk_X509_TRUST_sort(st) SKM_sk_sort(X509_TRUST, (st)) #define sk_X509_TRUST_is_sorted(st) SKM_sk_is_sorted(X509_TRUST, (st)) #define sk_X509_VERIFY_PARAM_new(cmp) SKM_sk_new(X509_VERIFY_PARAM, (cmp)) #define sk_X509_VERIFY_PARAM_new_null() SKM_sk_new_null(X509_VERIFY_PARAM) #define sk_X509_VERIFY_PARAM_free(st) SKM_sk_free(X509_VERIFY_PARAM, (st)) #define sk_X509_VERIFY_PARAM_num(st) SKM_sk_num(X509_VERIFY_PARAM, (st)) #define sk_X509_VERIFY_PARAM_value(st,i) SKM_sk_value(X509_VERIFY_PARAM, (st), (i)) #define sk_X509_VERIFY_PARAM_set(st,i,val) SKM_sk_set(X509_VERIFY_PARAM, (st), (i), (val)) #define sk_X509_VERIFY_PARAM_zero(st) SKM_sk_zero(X509_VERIFY_PARAM, (st)) #define sk_X509_VERIFY_PARAM_push(st,val) SKM_sk_push(X509_VERIFY_PARAM, (st), (val)) #define sk_X509_VERIFY_PARAM_unshift(st,val) SKM_sk_unshift(X509_VERIFY_PARAM, (st), (val)) #define sk_X509_VERIFY_PARAM_find(st,val) SKM_sk_find(X509_VERIFY_PARAM, (st), (val)) #define sk_X509_VERIFY_PARAM_find_ex(st,val) SKM_sk_find_ex(X509_VERIFY_PARAM, (st), (val)) #define sk_X509_VERIFY_PARAM_delete(st,i) SKM_sk_delete(X509_VERIFY_PARAM, (st), (i)) #define sk_X509_VERIFY_PARAM_delete_ptr(st,ptr) SKM_sk_delete_ptr(X509_VERIFY_PARAM, (st), (ptr)) #define sk_X509_VERIFY_PARAM_insert(st,val,i) SKM_sk_insert(X509_VERIFY_PARAM, (st), (val), (i)) #define sk_X509_VERIFY_PARAM_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(X509_VERIFY_PARAM, (st), (cmp)) #define sk_X509_VERIFY_PARAM_dup(st) SKM_sk_dup(X509_VERIFY_PARAM, st) #define sk_X509_VERIFY_PARAM_pop_free(st,free_func) SKM_sk_pop_free(X509_VERIFY_PARAM, (st), (free_func)) #define sk_X509_VERIFY_PARAM_shift(st) SKM_sk_shift(X509_VERIFY_PARAM, (st)) #define sk_X509_VERIFY_PARAM_pop(st) SKM_sk_pop(X509_VERIFY_PARAM, (st)) #define sk_X509_VERIFY_PARAM_sort(st) SKM_sk_sort(X509_VERIFY_PARAM, (st)) #define sk_X509_VERIFY_PARAM_is_sorted(st) SKM_sk_is_sorted(X509_VERIFY_PARAM, (st)) #define sk_nid_triple_new(cmp) SKM_sk_new(nid_triple, (cmp)) #define sk_nid_triple_new_null() SKM_sk_new_null(nid_triple) #define sk_nid_triple_free(st) SKM_sk_free(nid_triple, (st)) #define sk_nid_triple_num(st) SKM_sk_num(nid_triple, (st)) #define sk_nid_triple_value(st,i) SKM_sk_value(nid_triple, (st), (i)) #define sk_nid_triple_set(st,i,val) SKM_sk_set(nid_triple, (st), (i), (val)) #define sk_nid_triple_zero(st) SKM_sk_zero(nid_triple, (st)) #define sk_nid_triple_push(st,val) SKM_sk_push(nid_triple, (st), (val)) #define sk_nid_triple_unshift(st,val) SKM_sk_unshift(nid_triple, (st), (val)) #define sk_nid_triple_find(st,val) SKM_sk_find(nid_triple, (st), (val)) #define sk_nid_triple_find_ex(st,val) SKM_sk_find_ex(nid_triple, (st), (val)) #define sk_nid_triple_delete(st,i) SKM_sk_delete(nid_triple, (st), (i)) #define sk_nid_triple_delete_ptr(st,ptr) SKM_sk_delete_ptr(nid_triple, (st), (ptr)) #define sk_nid_triple_insert(st,val,i) SKM_sk_insert(nid_triple, (st), (val), (i)) #define sk_nid_triple_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(nid_triple, (st), (cmp)) #define sk_nid_triple_dup(st) SKM_sk_dup(nid_triple, st) #define sk_nid_triple_pop_free(st,free_func) SKM_sk_pop_free(nid_triple, (st), (free_func)) #define sk_nid_triple_shift(st) SKM_sk_shift(nid_triple, (st)) #define sk_nid_triple_pop(st) SKM_sk_pop(nid_triple, (st)) #define sk_nid_triple_sort(st) SKM_sk_sort(nid_triple, (st)) #define sk_nid_triple_is_sorted(st) SKM_sk_is_sorted(nid_triple, (st)) #define sk_void_new(cmp) SKM_sk_new(void, (cmp)) #define sk_void_new_null() SKM_sk_new_null(void) #define sk_void_free(st) SKM_sk_free(void, (st)) #define sk_void_num(st) SKM_sk_num(void, (st)) #define sk_void_value(st,i) SKM_sk_value(void, (st), (i)) #define sk_void_set(st,i,val) SKM_sk_set(void, (st), (i), (val)) #define sk_void_zero(st) SKM_sk_zero(void, (st)) #define sk_void_push(st,val) SKM_sk_push(void, (st), (val)) #define sk_void_unshift(st,val) SKM_sk_unshift(void, (st), (val)) #define sk_void_find(st,val) SKM_sk_find(void, (st), (val)) #define sk_void_find_ex(st,val) SKM_sk_find_ex(void, (st), (val)) #define sk_void_delete(st,i) SKM_sk_delete(void, (st), (i)) #define sk_void_delete_ptr(st,ptr) SKM_sk_delete_ptr(void, (st), (ptr)) #define sk_void_insert(st,val,i) SKM_sk_insert(void, (st), (val), (i)) #define sk_void_set_cmp_func(st,cmp) SKM_sk_set_cmp_func(void, (st), (cmp)) #define sk_void_dup(st) SKM_sk_dup(void, st) #define sk_void_pop_free(st,free_func) SKM_sk_pop_free(void, (st), (free_func)) #define sk_void_shift(st) SKM_sk_shift(void, (st)) #define sk_void_pop(st) SKM_sk_pop(void, (st)) #define sk_void_sort(st) SKM_sk_sort(void, (st)) #define sk_void_is_sorted(st) SKM_sk_is_sorted(void, (st)) #define sk_OPENSSL_STRING_new(cmp) ((STACK_OF(OPENSSL_STRING) *)sk_new(CHECKED_SK_CMP_FUNC(char, cmp))) #define sk_OPENSSL_STRING_new_null() ((STACK_OF(OPENSSL_STRING) *)sk_new_null()) #define sk_OPENSSL_STRING_push(st,val) sk_push(CHECKED_STACK_OF(OPENSSL_STRING, st), CHECKED_PTR_OF(char, val)) #define sk_OPENSSL_STRING_find(st,val) sk_find(CHECKED_STACK_OF(OPENSSL_STRING, st), CHECKED_PTR_OF(char, val)) #define sk_OPENSSL_STRING_value(st,i) ((OPENSSL_STRING)sk_value(CHECKED_STACK_OF(OPENSSL_STRING, st), i)) #define sk_OPENSSL_STRING_num(st) SKM_sk_num(OPENSSL_STRING, st) #define sk_OPENSSL_STRING_pop_free(st,free_func) sk_pop_free(CHECKED_STACK_OF(OPENSSL_STRING, st), CHECKED_SK_FREE_FUNC2(OPENSSL_STRING, free_func)) #define sk_OPENSSL_STRING_insert(st,val,i) sk_insert(CHECKED_STACK_OF(OPENSSL_STRING, st), CHECKED_PTR_OF(char, val), i) #define sk_OPENSSL_STRING_free(st) SKM_sk_free(OPENSSL_STRING, st) #define sk_OPENSSL_STRING_set(st,i,val) sk_set(CHECKED_STACK_OF(OPENSSL_STRING, st), i, CHECKED_PTR_OF(char, val)) #define sk_OPENSSL_STRING_zero(st) SKM_sk_zero(OPENSSL_STRING, (st)) #define sk_OPENSSL_STRING_unshift(st,val) sk_unshift(CHECKED_STACK_OF(OPENSSL_STRING, st), CHECKED_PTR_OF(char, val)) #define sk_OPENSSL_STRING_find_ex(st,val) sk_find_ex((_STACK *)CHECKED_CONST_PTR_OF(STACK_OF(OPENSSL_STRING), st), CHECKED_CONST_PTR_OF(char, val)) #define sk_OPENSSL_STRING_delete(st,i) SKM_sk_delete(OPENSSL_STRING, (st), (i)) #define sk_OPENSSL_STRING_delete_ptr(st,ptr) (OPENSSL_STRING *)sk_delete_ptr(CHECKED_STACK_OF(OPENSSL_STRING, st), CHECKED_PTR_OF(char, ptr)) #define sk_OPENSSL_STRING_set_cmp_func(st,cmp) ((int (*)(const char * const *,const char * const *)) sk_set_cmp_func(CHECKED_STACK_OF(OPENSSL_STRING, st), CHECKED_SK_CMP_FUNC(char, cmp))) #define sk_OPENSSL_STRING_dup(st) SKM_sk_dup(OPENSSL_STRING, st) #define sk_OPENSSL_STRING_shift(st) SKM_sk_shift(OPENSSL_STRING, (st)) #define sk_OPENSSL_STRING_pop(st) (char *)sk_pop(CHECKED_STACK_OF(OPENSSL_STRING, st)) #define sk_OPENSSL_STRING_sort(st) SKM_sk_sort(OPENSSL_STRING, (st)) #define sk_OPENSSL_STRING_is_sorted(st) SKM_sk_is_sorted(OPENSSL_STRING, (st)) #define sk_OPENSSL_BLOCK_new(cmp) ((STACK_OF(OPENSSL_BLOCK) *)sk_new(CHECKED_SK_CMP_FUNC(void, cmp))) #define sk_OPENSSL_BLOCK_new_null() ((STACK_OF(OPENSSL_BLOCK) *)sk_new_null()) #define sk_OPENSSL_BLOCK_push(st,val) sk_push(CHECKED_STACK_OF(OPENSSL_BLOCK, st), CHECKED_PTR_OF(void, val)) #define sk_OPENSSL_BLOCK_find(st,val) sk_find(CHECKED_STACK_OF(OPENSSL_BLOCK, st), CHECKED_PTR_OF(void, val)) #define sk_OPENSSL_BLOCK_value(st,i) ((OPENSSL_BLOCK)sk_value(CHECKED_STACK_OF(OPENSSL_BLOCK, st), i)) #define sk_OPENSSL_BLOCK_num(st) SKM_sk_num(OPENSSL_BLOCK, st) #define sk_OPENSSL_BLOCK_pop_free(st,free_func) sk_pop_free(CHECKED_STACK_OF(OPENSSL_BLOCK, st), CHECKED_SK_FREE_FUNC2(OPENSSL_BLOCK, free_func)) #define sk_OPENSSL_BLOCK_insert(st,val,i) sk_insert(CHECKED_STACK_OF(OPENSSL_BLOCK, st), CHECKED_PTR_OF(void, val), i) #define sk_OPENSSL_BLOCK_free(st) SKM_sk_free(OPENSSL_BLOCK, st) #define sk_OPENSSL_BLOCK_set(st,i,val) sk_set(CHECKED_STACK_OF(OPENSSL_BLOCK, st), i, CHECKED_PTR_OF(void, val)) #define sk_OPENSSL_BLOCK_zero(st) SKM_sk_zero(OPENSSL_BLOCK, (st)) #define sk_OPENSSL_BLOCK_unshift(st,val) sk_unshift(CHECKED_STACK_OF(OPENSSL_BLOCK, st), CHECKED_PTR_OF(void, val)) #define sk_OPENSSL_BLOCK_find_ex(st,val) sk_find_ex((_STACK *)CHECKED_CONST_PTR_OF(STACK_OF(OPENSSL_BLOCK), st), CHECKED_CONST_PTR_OF(void, val)) #define sk_OPENSSL_BLOCK_delete(st,i) SKM_sk_delete(OPENSSL_BLOCK, (st), (i)) #define sk_OPENSSL_BLOCK_delete_ptr(st,ptr) (OPENSSL_BLOCK *)sk_delete_ptr(CHECKED_STACK_OF(OPENSSL_BLOCK, st), CHECKED_PTR_OF(void, ptr)) #define sk_OPENSSL_BLOCK_set_cmp_func(st,cmp) ((int (*)(const void * const *,const void * const *)) sk_set_cmp_func(CHECKED_STACK_OF(OPENSSL_BLOCK, st), CHECKED_SK_CMP_FUNC(void, cmp))) #define sk_OPENSSL_BLOCK_dup(st) SKM_sk_dup(OPENSSL_BLOCK, st) #define sk_OPENSSL_BLOCK_shift(st) SKM_sk_shift(OPENSSL_BLOCK, (st)) #define sk_OPENSSL_BLOCK_pop(st) (void *)sk_pop(CHECKED_STACK_OF(OPENSSL_BLOCK, st)) #define sk_OPENSSL_BLOCK_sort(st) SKM_sk_sort(OPENSSL_BLOCK, (st)) #define sk_OPENSSL_BLOCK_is_sorted(st) SKM_sk_is_sorted(OPENSSL_BLOCK, (st)) #define sk_OPENSSL_PSTRING_new(cmp) ((STACK_OF(OPENSSL_PSTRING) *)sk_new(CHECKED_SK_CMP_FUNC(OPENSSL_STRING, cmp))) #define sk_OPENSSL_PSTRING_new_null() ((STACK_OF(OPENSSL_PSTRING) *)sk_new_null()) #define sk_OPENSSL_PSTRING_push(st,val) sk_push(CHECKED_STACK_OF(OPENSSL_PSTRING, st), CHECKED_PTR_OF(OPENSSL_STRING, val)) #define sk_OPENSSL_PSTRING_find(st,val) sk_find(CHECKED_STACK_OF(OPENSSL_PSTRING, st), CHECKED_PTR_OF(OPENSSL_STRING, val)) #define sk_OPENSSL_PSTRING_value(st,i) ((OPENSSL_PSTRING)sk_value(CHECKED_STACK_OF(OPENSSL_PSTRING, st), i)) #define sk_OPENSSL_PSTRING_num(st) SKM_sk_num(OPENSSL_PSTRING, st) #define sk_OPENSSL_PSTRING_pop_free(st,free_func) sk_pop_free(CHECKED_STACK_OF(OPENSSL_PSTRING, st), CHECKED_SK_FREE_FUNC2(OPENSSL_PSTRING, free_func)) #define sk_OPENSSL_PSTRING_insert(st,val,i) sk_insert(CHECKED_STACK_OF(OPENSSL_PSTRING, st), CHECKED_PTR_OF(OPENSSL_STRING, val), i) #define sk_OPENSSL_PSTRING_free(st) SKM_sk_free(OPENSSL_PSTRING, st) #define sk_OPENSSL_PSTRING_set(st,i,val) sk_set(CHECKED_STACK_OF(OPENSSL_PSTRING, st), i, CHECKED_PTR_OF(OPENSSL_STRING, val)) #define sk_OPENSSL_PSTRING_zero(st) SKM_sk_zero(OPENSSL_PSTRING, (st)) #define sk_OPENSSL_PSTRING_unshift(st,val) sk_unshift(CHECKED_STACK_OF(OPENSSL_PSTRING, st), CHECKED_PTR_OF(OPENSSL_STRING, val)) #define sk_OPENSSL_PSTRING_find_ex(st,val) sk_find_ex((_STACK *)CHECKED_CONST_PTR_OF(STACK_OF(OPENSSL_PSTRING), st), CHECKED_CONST_PTR_OF(OPENSSL_STRING, val)) #define sk_OPENSSL_PSTRING_delete(st,i) SKM_sk_delete(OPENSSL_PSTRING, (st), (i)) #define sk_OPENSSL_PSTRING_delete_ptr(st,ptr) (OPENSSL_PSTRING *)sk_delete_ptr(CHECKED_STACK_OF(OPENSSL_PSTRING, st), CHECKED_PTR_OF(OPENSSL_STRING, ptr)) #define sk_OPENSSL_PSTRING_set_cmp_func(st,cmp) ((int (*)(const OPENSSL_STRING * const *,const OPENSSL_STRING * const *)) sk_set_cmp_func(CHECKED_STACK_OF(OPENSSL_PSTRING, st), CHECKED_SK_CMP_FUNC(OPENSSL_STRING, cmp))) #define sk_OPENSSL_PSTRING_dup(st) SKM_sk_dup(OPENSSL_PSTRING, st) #define sk_OPENSSL_PSTRING_shift(st) SKM_sk_shift(OPENSSL_PSTRING, (st)) #define sk_OPENSSL_PSTRING_pop(st) (OPENSSL_STRING *)sk_pop(CHECKED_STACK_OF(OPENSSL_PSTRING, st)) #define sk_OPENSSL_PSTRING_sort(st) SKM_sk_sort(OPENSSL_PSTRING, (st)) #define sk_OPENSSL_PSTRING_is_sorted(st) SKM_sk_is_sorted(OPENSSL_PSTRING, (st)) #define d2i_ASN1_SET_OF_ACCESS_DESCRIPTION(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(ACCESS_DESCRIPTION, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_ACCESS_DESCRIPTION(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(ACCESS_DESCRIPTION, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_ACCESS_DESCRIPTION(st,i2d_func,buf,len) SKM_ASN1_seq_pack(ACCESS_DESCRIPTION, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_ACCESS_DESCRIPTION(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(ACCESS_DESCRIPTION, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_ASN1_INTEGER(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(ASN1_INTEGER, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_ASN1_INTEGER(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(ASN1_INTEGER, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_ASN1_INTEGER(st,i2d_func,buf,len) SKM_ASN1_seq_pack(ASN1_INTEGER, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_ASN1_INTEGER(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(ASN1_INTEGER, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_ASN1_OBJECT(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(ASN1_OBJECT, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_ASN1_OBJECT(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(ASN1_OBJECT, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_ASN1_OBJECT(st,i2d_func,buf,len) SKM_ASN1_seq_pack(ASN1_OBJECT, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_ASN1_OBJECT(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(ASN1_OBJECT, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_ASN1_TYPE(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(ASN1_TYPE, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_ASN1_TYPE(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(ASN1_TYPE, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_ASN1_TYPE(st,i2d_func,buf,len) SKM_ASN1_seq_pack(ASN1_TYPE, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_ASN1_TYPE(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(ASN1_TYPE, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_ASN1_UTF8STRING(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(ASN1_UTF8STRING, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_ASN1_UTF8STRING(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(ASN1_UTF8STRING, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_ASN1_UTF8STRING(st,i2d_func,buf,len) SKM_ASN1_seq_pack(ASN1_UTF8STRING, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_ASN1_UTF8STRING(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(ASN1_UTF8STRING, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_DIST_POINT(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(DIST_POINT, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_DIST_POINT(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(DIST_POINT, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_DIST_POINT(st,i2d_func,buf,len) SKM_ASN1_seq_pack(DIST_POINT, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_DIST_POINT(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(DIST_POINT, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_ESS_CERT_ID(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(ESS_CERT_ID, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_ESS_CERT_ID(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(ESS_CERT_ID, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_ESS_CERT_ID(st,i2d_func,buf,len) SKM_ASN1_seq_pack(ESS_CERT_ID, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_ESS_CERT_ID(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(ESS_CERT_ID, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_EVP_MD(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(EVP_MD, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_EVP_MD(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(EVP_MD, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_EVP_MD(st,i2d_func,buf,len) SKM_ASN1_seq_pack(EVP_MD, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_EVP_MD(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(EVP_MD, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_GENERAL_NAME(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(GENERAL_NAME, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_GENERAL_NAME(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(GENERAL_NAME, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_GENERAL_NAME(st,i2d_func,buf,len) SKM_ASN1_seq_pack(GENERAL_NAME, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_GENERAL_NAME(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(GENERAL_NAME, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_OCSP_ONEREQ(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(OCSP_ONEREQ, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_OCSP_ONEREQ(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(OCSP_ONEREQ, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_OCSP_ONEREQ(st,i2d_func,buf,len) SKM_ASN1_seq_pack(OCSP_ONEREQ, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_OCSP_ONEREQ(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(OCSP_ONEREQ, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_OCSP_SINGLERESP(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(OCSP_SINGLERESP, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_OCSP_SINGLERESP(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(OCSP_SINGLERESP, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_OCSP_SINGLERESP(st,i2d_func,buf,len) SKM_ASN1_seq_pack(OCSP_SINGLERESP, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_OCSP_SINGLERESP(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(OCSP_SINGLERESP, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_PKCS12_SAFEBAG(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(PKCS12_SAFEBAG, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_PKCS12_SAFEBAG(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(PKCS12_SAFEBAG, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_PKCS12_SAFEBAG(st,i2d_func,buf,len) SKM_ASN1_seq_pack(PKCS12_SAFEBAG, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_PKCS12_SAFEBAG(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(PKCS12_SAFEBAG, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_PKCS7(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(PKCS7, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_PKCS7(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(PKCS7, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_PKCS7(st,i2d_func,buf,len) SKM_ASN1_seq_pack(PKCS7, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_PKCS7(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(PKCS7, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_PKCS7_RECIP_INFO(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(PKCS7_RECIP_INFO, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_PKCS7_RECIP_INFO(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(PKCS7_RECIP_INFO, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_PKCS7_RECIP_INFO(st,i2d_func,buf,len) SKM_ASN1_seq_pack(PKCS7_RECIP_INFO, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_PKCS7_RECIP_INFO(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(PKCS7_RECIP_INFO, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_PKCS7_SIGNER_INFO(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(PKCS7_SIGNER_INFO, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_PKCS7_SIGNER_INFO(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(PKCS7_SIGNER_INFO, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_PKCS7_SIGNER_INFO(st,i2d_func,buf,len) SKM_ASN1_seq_pack(PKCS7_SIGNER_INFO, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_PKCS7_SIGNER_INFO(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(PKCS7_SIGNER_INFO, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_POLICYINFO(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(POLICYINFO, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_POLICYINFO(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(POLICYINFO, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_POLICYINFO(st,i2d_func,buf,len) SKM_ASN1_seq_pack(POLICYINFO, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_POLICYINFO(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(POLICYINFO, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_POLICYQUALINFO(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(POLICYQUALINFO, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_POLICYQUALINFO(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(POLICYQUALINFO, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_POLICYQUALINFO(st,i2d_func,buf,len) SKM_ASN1_seq_pack(POLICYQUALINFO, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_POLICYQUALINFO(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(POLICYQUALINFO, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_SXNETID(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(SXNETID, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_SXNETID(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(SXNETID, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_SXNETID(st,i2d_func,buf,len) SKM_ASN1_seq_pack(SXNETID, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_SXNETID(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(SXNETID, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_X509(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(X509, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_X509(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(X509, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_X509(st,i2d_func,buf,len) SKM_ASN1_seq_pack(X509, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_X509(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(X509, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_X509_ALGOR(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(X509_ALGOR, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_X509_ALGOR(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(X509_ALGOR, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_X509_ALGOR(st,i2d_func,buf,len) SKM_ASN1_seq_pack(X509_ALGOR, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_X509_ALGOR(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(X509_ALGOR, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_X509_ATTRIBUTE(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(X509_ATTRIBUTE, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_X509_ATTRIBUTE(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(X509_ATTRIBUTE, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_X509_ATTRIBUTE(st,i2d_func,buf,len) SKM_ASN1_seq_pack(X509_ATTRIBUTE, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_X509_ATTRIBUTE(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(X509_ATTRIBUTE, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_X509_CRL(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(X509_CRL, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_X509_CRL(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(X509_CRL, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_X509_CRL(st,i2d_func,buf,len) SKM_ASN1_seq_pack(X509_CRL, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_X509_CRL(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(X509_CRL, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_X509_EXTENSION(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(X509_EXTENSION, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_X509_EXTENSION(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(X509_EXTENSION, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_X509_EXTENSION(st,i2d_func,buf,len) SKM_ASN1_seq_pack(X509_EXTENSION, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_X509_EXTENSION(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(X509_EXTENSION, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_X509_NAME_ENTRY(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(X509_NAME_ENTRY, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_X509_NAME_ENTRY(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(X509_NAME_ENTRY, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_X509_NAME_ENTRY(st,i2d_func,buf,len) SKM_ASN1_seq_pack(X509_NAME_ENTRY, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_X509_NAME_ENTRY(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(X509_NAME_ENTRY, (buf), (len), (d2i_func), (free_func)) #define d2i_ASN1_SET_OF_X509_REVOKED(st,pp,length,d2i_func,free_func,ex_tag,ex_class) SKM_ASN1_SET_OF_d2i(X509_REVOKED, (st), (pp), (length), (d2i_func), (free_func), (ex_tag), (ex_class)) #define i2d_ASN1_SET_OF_X509_REVOKED(st,pp,i2d_func,ex_tag,ex_class,is_set) SKM_ASN1_SET_OF_i2d(X509_REVOKED, (st), (pp), (i2d_func), (ex_tag), (ex_class), (is_set)) #define ASN1_seq_pack_X509_REVOKED(st,i2d_func,buf,len) SKM_ASN1_seq_pack(X509_REVOKED, (st), (i2d_func), (buf), (len)) #define ASN1_seq_unpack_X509_REVOKED(buf,len,d2i_func,free_func) SKM_ASN1_seq_unpack(X509_REVOKED, (buf), (len), (d2i_func), (free_func)) #define PKCS12_decrypt_d2i_PKCS12_SAFEBAG(algor,d2i_func,free_func,pass,passlen,oct,seq) SKM_PKCS12_decrypt_d2i(PKCS12_SAFEBAG, (algor), (d2i_func), (free_func), (pass), (passlen), (oct), (seq)) #define PKCS12_decrypt_d2i_PKCS7(algor,d2i_func,free_func,pass,passlen,oct,seq) SKM_PKCS12_decrypt_d2i(PKCS7, (algor), (d2i_func), (free_func), (pass), (passlen), (oct), (seq)) #define lh_ADDED_OBJ_new() LHM_lh_new(ADDED_OBJ,added_obj) #define lh_ADDED_OBJ_insert(lh,inst) LHM_lh_insert(ADDED_OBJ,lh,inst) #define lh_ADDED_OBJ_retrieve(lh,inst) LHM_lh_retrieve(ADDED_OBJ,lh,inst) #define lh_ADDED_OBJ_delete(lh,inst) LHM_lh_delete(ADDED_OBJ,lh,inst) #define lh_ADDED_OBJ_doall(lh,fn) LHM_lh_doall(ADDED_OBJ,lh,fn) #define lh_ADDED_OBJ_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(ADDED_OBJ,lh,fn,arg_type,arg) #define lh_ADDED_OBJ_error(lh) LHM_lh_error(ADDED_OBJ,lh) #define lh_ADDED_OBJ_num_items(lh) LHM_lh_num_items(ADDED_OBJ,lh) #define lh_ADDED_OBJ_down_load(lh) LHM_lh_down_load(ADDED_OBJ,lh) #define lh_ADDED_OBJ_node_stats_bio(lh,out) LHM_lh_node_stats_bio(ADDED_OBJ,lh,out) #define lh_ADDED_OBJ_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(ADDED_OBJ,lh,out) #define lh_ADDED_OBJ_stats_bio(lh,out) LHM_lh_stats_bio(ADDED_OBJ,lh,out) #define lh_ADDED_OBJ_free(lh) LHM_lh_free(ADDED_OBJ,lh) #define lh_APP_INFO_new() LHM_lh_new(APP_INFO,app_info) #define lh_APP_INFO_insert(lh,inst) LHM_lh_insert(APP_INFO,lh,inst) #define lh_APP_INFO_retrieve(lh,inst) LHM_lh_retrieve(APP_INFO,lh,inst) #define lh_APP_INFO_delete(lh,inst) LHM_lh_delete(APP_INFO,lh,inst) #define lh_APP_INFO_doall(lh,fn) LHM_lh_doall(APP_INFO,lh,fn) #define lh_APP_INFO_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(APP_INFO,lh,fn,arg_type,arg) #define lh_APP_INFO_error(lh) LHM_lh_error(APP_INFO,lh) #define lh_APP_INFO_num_items(lh) LHM_lh_num_items(APP_INFO,lh) #define lh_APP_INFO_down_load(lh) LHM_lh_down_load(APP_INFO,lh) #define lh_APP_INFO_node_stats_bio(lh,out) LHM_lh_node_stats_bio(APP_INFO,lh,out) #define lh_APP_INFO_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(APP_INFO,lh,out) #define lh_APP_INFO_stats_bio(lh,out) LHM_lh_stats_bio(APP_INFO,lh,out) #define lh_APP_INFO_free(lh) LHM_lh_free(APP_INFO,lh) #define lh_CONF_VALUE_new() LHM_lh_new(CONF_VALUE,conf_value) #define lh_CONF_VALUE_insert(lh,inst) LHM_lh_insert(CONF_VALUE,lh,inst) #define lh_CONF_VALUE_retrieve(lh,inst) LHM_lh_retrieve(CONF_VALUE,lh,inst) #define lh_CONF_VALUE_delete(lh,inst) LHM_lh_delete(CONF_VALUE,lh,inst) #define lh_CONF_VALUE_doall(lh,fn) LHM_lh_doall(CONF_VALUE,lh,fn) #define lh_CONF_VALUE_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(CONF_VALUE,lh,fn,arg_type,arg) #define lh_CONF_VALUE_error(lh) LHM_lh_error(CONF_VALUE,lh) #define lh_CONF_VALUE_num_items(lh) LHM_lh_num_items(CONF_VALUE,lh) #define lh_CONF_VALUE_down_load(lh) LHM_lh_down_load(CONF_VALUE,lh) #define lh_CONF_VALUE_node_stats_bio(lh,out) LHM_lh_node_stats_bio(CONF_VALUE,lh,out) #define lh_CONF_VALUE_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(CONF_VALUE,lh,out) #define lh_CONF_VALUE_stats_bio(lh,out) LHM_lh_stats_bio(CONF_VALUE,lh,out) #define lh_CONF_VALUE_free(lh) LHM_lh_free(CONF_VALUE,lh) #define lh_ENGINE_PILE_new() LHM_lh_new(ENGINE_PILE,engine_pile) #define lh_ENGINE_PILE_insert(lh,inst) LHM_lh_insert(ENGINE_PILE,lh,inst) #define lh_ENGINE_PILE_retrieve(lh,inst) LHM_lh_retrieve(ENGINE_PILE,lh,inst) #define lh_ENGINE_PILE_delete(lh,inst) LHM_lh_delete(ENGINE_PILE,lh,inst) #define lh_ENGINE_PILE_doall(lh,fn) LHM_lh_doall(ENGINE_PILE,lh,fn) #define lh_ENGINE_PILE_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(ENGINE_PILE,lh,fn,arg_type,arg) #define lh_ENGINE_PILE_error(lh) LHM_lh_error(ENGINE_PILE,lh) #define lh_ENGINE_PILE_num_items(lh) LHM_lh_num_items(ENGINE_PILE,lh) #define lh_ENGINE_PILE_down_load(lh) LHM_lh_down_load(ENGINE_PILE,lh) #define lh_ENGINE_PILE_node_stats_bio(lh,out) LHM_lh_node_stats_bio(ENGINE_PILE,lh,out) #define lh_ENGINE_PILE_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(ENGINE_PILE,lh,out) #define lh_ENGINE_PILE_stats_bio(lh,out) LHM_lh_stats_bio(ENGINE_PILE,lh,out) #define lh_ENGINE_PILE_free(lh) LHM_lh_free(ENGINE_PILE,lh) #define lh_ERR_STATE_new() LHM_lh_new(ERR_STATE,err_state) #define lh_ERR_STATE_insert(lh,inst) LHM_lh_insert(ERR_STATE,lh,inst) #define lh_ERR_STATE_retrieve(lh,inst) LHM_lh_retrieve(ERR_STATE,lh,inst) #define lh_ERR_STATE_delete(lh,inst) LHM_lh_delete(ERR_STATE,lh,inst) #define lh_ERR_STATE_doall(lh,fn) LHM_lh_doall(ERR_STATE,lh,fn) #define lh_ERR_STATE_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(ERR_STATE,lh,fn,arg_type,arg) #define lh_ERR_STATE_error(lh) LHM_lh_error(ERR_STATE,lh) #define lh_ERR_STATE_num_items(lh) LHM_lh_num_items(ERR_STATE,lh) #define lh_ERR_STATE_down_load(lh) LHM_lh_down_load(ERR_STATE,lh) #define lh_ERR_STATE_node_stats_bio(lh,out) LHM_lh_node_stats_bio(ERR_STATE,lh,out) #define lh_ERR_STATE_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(ERR_STATE,lh,out) #define lh_ERR_STATE_stats_bio(lh,out) LHM_lh_stats_bio(ERR_STATE,lh,out) #define lh_ERR_STATE_free(lh) LHM_lh_free(ERR_STATE,lh) #define lh_ERR_STRING_DATA_new() LHM_lh_new(ERR_STRING_DATA,err_string_data) #define lh_ERR_STRING_DATA_insert(lh,inst) LHM_lh_insert(ERR_STRING_DATA,lh,inst) #define lh_ERR_STRING_DATA_retrieve(lh,inst) LHM_lh_retrieve(ERR_STRING_DATA,lh,inst) #define lh_ERR_STRING_DATA_delete(lh,inst) LHM_lh_delete(ERR_STRING_DATA,lh,inst) #define lh_ERR_STRING_DATA_doall(lh,fn) LHM_lh_doall(ERR_STRING_DATA,lh,fn) #define lh_ERR_STRING_DATA_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(ERR_STRING_DATA,lh,fn,arg_type,arg) #define lh_ERR_STRING_DATA_error(lh) LHM_lh_error(ERR_STRING_DATA,lh) #define lh_ERR_STRING_DATA_num_items(lh) LHM_lh_num_items(ERR_STRING_DATA,lh) #define lh_ERR_STRING_DATA_down_load(lh) LHM_lh_down_load(ERR_STRING_DATA,lh) #define lh_ERR_STRING_DATA_node_stats_bio(lh,out) LHM_lh_node_stats_bio(ERR_STRING_DATA,lh,out) #define lh_ERR_STRING_DATA_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(ERR_STRING_DATA,lh,out) #define lh_ERR_STRING_DATA_stats_bio(lh,out) LHM_lh_stats_bio(ERR_STRING_DATA,lh,out) #define lh_ERR_STRING_DATA_free(lh) LHM_lh_free(ERR_STRING_DATA,lh) #define lh_EX_CLASS_ITEM_new() LHM_lh_new(EX_CLASS_ITEM,ex_class_item) #define lh_EX_CLASS_ITEM_insert(lh,inst) LHM_lh_insert(EX_CLASS_ITEM,lh,inst) #define lh_EX_CLASS_ITEM_retrieve(lh,inst) LHM_lh_retrieve(EX_CLASS_ITEM,lh,inst) #define lh_EX_CLASS_ITEM_delete(lh,inst) LHM_lh_delete(EX_CLASS_ITEM,lh,inst) #define lh_EX_CLASS_ITEM_doall(lh,fn) LHM_lh_doall(EX_CLASS_ITEM,lh,fn) #define lh_EX_CLASS_ITEM_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(EX_CLASS_ITEM,lh,fn,arg_type,arg) #define lh_EX_CLASS_ITEM_error(lh) LHM_lh_error(EX_CLASS_ITEM,lh) #define lh_EX_CLASS_ITEM_num_items(lh) LHM_lh_num_items(EX_CLASS_ITEM,lh) #define lh_EX_CLASS_ITEM_down_load(lh) LHM_lh_down_load(EX_CLASS_ITEM,lh) #define lh_EX_CLASS_ITEM_node_stats_bio(lh,out) LHM_lh_node_stats_bio(EX_CLASS_ITEM,lh,out) #define lh_EX_CLASS_ITEM_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(EX_CLASS_ITEM,lh,out) #define lh_EX_CLASS_ITEM_stats_bio(lh,out) LHM_lh_stats_bio(EX_CLASS_ITEM,lh,out) #define lh_EX_CLASS_ITEM_free(lh) LHM_lh_free(EX_CLASS_ITEM,lh) #define lh_FUNCTION_new() LHM_lh_new(FUNCTION,function) #define lh_FUNCTION_insert(lh,inst) LHM_lh_insert(FUNCTION,lh,inst) #define lh_FUNCTION_retrieve(lh,inst) LHM_lh_retrieve(FUNCTION,lh,inst) #define lh_FUNCTION_delete(lh,inst) LHM_lh_delete(FUNCTION,lh,inst) #define lh_FUNCTION_doall(lh,fn) LHM_lh_doall(FUNCTION,lh,fn) #define lh_FUNCTION_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(FUNCTION,lh,fn,arg_type,arg) #define lh_FUNCTION_error(lh) LHM_lh_error(FUNCTION,lh) #define lh_FUNCTION_num_items(lh) LHM_lh_num_items(FUNCTION,lh) #define lh_FUNCTION_down_load(lh) LHM_lh_down_load(FUNCTION,lh) #define lh_FUNCTION_node_stats_bio(lh,out) LHM_lh_node_stats_bio(FUNCTION,lh,out) #define lh_FUNCTION_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(FUNCTION,lh,out) #define lh_FUNCTION_stats_bio(lh,out) LHM_lh_stats_bio(FUNCTION,lh,out) #define lh_FUNCTION_free(lh) LHM_lh_free(FUNCTION,lh) #define lh_MEM_new() LHM_lh_new(MEM,mem) #define lh_MEM_insert(lh,inst) LHM_lh_insert(MEM,lh,inst) #define lh_MEM_retrieve(lh,inst) LHM_lh_retrieve(MEM,lh,inst) #define lh_MEM_delete(lh,inst) LHM_lh_delete(MEM,lh,inst) #define lh_MEM_doall(lh,fn) LHM_lh_doall(MEM,lh,fn) #define lh_MEM_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(MEM,lh,fn,arg_type,arg) #define lh_MEM_error(lh) LHM_lh_error(MEM,lh) #define lh_MEM_num_items(lh) LHM_lh_num_items(MEM,lh) #define lh_MEM_down_load(lh) LHM_lh_down_load(MEM,lh) #define lh_MEM_node_stats_bio(lh,out) LHM_lh_node_stats_bio(MEM,lh,out) #define lh_MEM_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(MEM,lh,out) #define lh_MEM_stats_bio(lh,out) LHM_lh_stats_bio(MEM,lh,out) #define lh_MEM_free(lh) LHM_lh_free(MEM,lh) #define lh_OBJ_NAME_new() LHM_lh_new(OBJ_NAME,obj_name) #define lh_OBJ_NAME_insert(lh,inst) LHM_lh_insert(OBJ_NAME,lh,inst) #define lh_OBJ_NAME_retrieve(lh,inst) LHM_lh_retrieve(OBJ_NAME,lh,inst) #define lh_OBJ_NAME_delete(lh,inst) LHM_lh_delete(OBJ_NAME,lh,inst) #define lh_OBJ_NAME_doall(lh,fn) LHM_lh_doall(OBJ_NAME,lh,fn) #define lh_OBJ_NAME_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(OBJ_NAME,lh,fn,arg_type,arg) #define lh_OBJ_NAME_error(lh) LHM_lh_error(OBJ_NAME,lh) #define lh_OBJ_NAME_num_items(lh) LHM_lh_num_items(OBJ_NAME,lh) #define lh_OBJ_NAME_down_load(lh) LHM_lh_down_load(OBJ_NAME,lh) #define lh_OBJ_NAME_node_stats_bio(lh,out) LHM_lh_node_stats_bio(OBJ_NAME,lh,out) #define lh_OBJ_NAME_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(OBJ_NAME,lh,out) #define lh_OBJ_NAME_stats_bio(lh,out) LHM_lh_stats_bio(OBJ_NAME,lh,out) #define lh_OBJ_NAME_free(lh) LHM_lh_free(OBJ_NAME,lh) #define lh_OPENSSL_CSTRING_new() LHM_lh_new(OPENSSL_CSTRING,openssl_cstring) #define lh_OPENSSL_CSTRING_insert(lh,inst) LHM_lh_insert(OPENSSL_CSTRING,lh,inst) #define lh_OPENSSL_CSTRING_retrieve(lh,inst) LHM_lh_retrieve(OPENSSL_CSTRING,lh,inst) #define lh_OPENSSL_CSTRING_delete(lh,inst) LHM_lh_delete(OPENSSL_CSTRING,lh,inst) #define lh_OPENSSL_CSTRING_doall(lh,fn) LHM_lh_doall(OPENSSL_CSTRING,lh,fn) #define lh_OPENSSL_CSTRING_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(OPENSSL_CSTRING,lh,fn,arg_type,arg) #define lh_OPENSSL_CSTRING_error(lh) LHM_lh_error(OPENSSL_CSTRING,lh) #define lh_OPENSSL_CSTRING_num_items(lh) LHM_lh_num_items(OPENSSL_CSTRING,lh) #define lh_OPENSSL_CSTRING_down_load(lh) LHM_lh_down_load(OPENSSL_CSTRING,lh) #define lh_OPENSSL_CSTRING_node_stats_bio(lh,out) LHM_lh_node_stats_bio(OPENSSL_CSTRING,lh,out) #define lh_OPENSSL_CSTRING_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(OPENSSL_CSTRING,lh,out) #define lh_OPENSSL_CSTRING_stats_bio(lh,out) LHM_lh_stats_bio(OPENSSL_CSTRING,lh,out) #define lh_OPENSSL_CSTRING_free(lh) LHM_lh_free(OPENSSL_CSTRING,lh) #define lh_OPENSSL_STRING_new() LHM_lh_new(OPENSSL_STRING,openssl_string) #define lh_OPENSSL_STRING_insert(lh,inst) LHM_lh_insert(OPENSSL_STRING,lh,inst) #define lh_OPENSSL_STRING_retrieve(lh,inst) LHM_lh_retrieve(OPENSSL_STRING,lh,inst) #define lh_OPENSSL_STRING_delete(lh,inst) LHM_lh_delete(OPENSSL_STRING,lh,inst) #define lh_OPENSSL_STRING_doall(lh,fn) LHM_lh_doall(OPENSSL_STRING,lh,fn) #define lh_OPENSSL_STRING_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(OPENSSL_STRING,lh,fn,arg_type,arg) #define lh_OPENSSL_STRING_error(lh) LHM_lh_error(OPENSSL_STRING,lh) #define lh_OPENSSL_STRING_num_items(lh) LHM_lh_num_items(OPENSSL_STRING,lh) #define lh_OPENSSL_STRING_down_load(lh) LHM_lh_down_load(OPENSSL_STRING,lh) #define lh_OPENSSL_STRING_node_stats_bio(lh,out) LHM_lh_node_stats_bio(OPENSSL_STRING,lh,out) #define lh_OPENSSL_STRING_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(OPENSSL_STRING,lh,out) #define lh_OPENSSL_STRING_stats_bio(lh,out) LHM_lh_stats_bio(OPENSSL_STRING,lh,out) #define lh_OPENSSL_STRING_free(lh) LHM_lh_free(OPENSSL_STRING,lh) #define lh_SSL_SESSION_new() LHM_lh_new(SSL_SESSION,ssl_session) #define lh_SSL_SESSION_insert(lh,inst) LHM_lh_insert(SSL_SESSION,lh,inst) #define lh_SSL_SESSION_retrieve(lh,inst) LHM_lh_retrieve(SSL_SESSION,lh,inst) #define lh_SSL_SESSION_delete(lh,inst) LHM_lh_delete(SSL_SESSION,lh,inst) #define lh_SSL_SESSION_doall(lh,fn) LHM_lh_doall(SSL_SESSION,lh,fn) #define lh_SSL_SESSION_doall_arg(lh,fn,arg_type,arg) LHM_lh_doall_arg(SSL_SESSION,lh,fn,arg_type,arg) #define lh_SSL_SESSION_error(lh) LHM_lh_error(SSL_SESSION,lh) #define lh_SSL_SESSION_num_items(lh) LHM_lh_num_items(SSL_SESSION,lh) #define lh_SSL_SESSION_down_load(lh) LHM_lh_down_load(SSL_SESSION,lh) #define lh_SSL_SESSION_node_stats_bio(lh,out) LHM_lh_node_stats_bio(SSL_SESSION,lh,out) #define lh_SSL_SESSION_node_usage_stats_bio(lh,out) LHM_lh_node_usage_stats_bio(SSL_SESSION,lh,out) #define lh_SSL_SESSION_stats_bio(lh,out) LHM_lh_stats_bio(SSL_SESSION,lh,out) #define lh_SSL_SESSION_free(lh) LHM_lh_free(SSL_SESSION,lh) # 130 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/opensslv.h" 1 3 4 #define HEADER_OPENSSLV_H # 28 "/usr/include/openssl/opensslv.h" 3 4 #define OPENSSL_VERSION_NUMBER 0x1000100fL #define OPENSSL_VERSION_TEXT "OpenSSL 1.0.1 14 Mar 2012" #define OPENSSL_VERSION_PTEXT " part of " OPENSSL_VERSION_TEXT # 85 "/usr/include/openssl/opensslv.h" 3 4 #define SHLIB_VERSION_HISTORY "" #define SHLIB_VERSION_NUMBER "1.0.0" # 131 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/ossl_typ.h" 1 3 4 # 56 "/usr/include/openssl/ossl_typ.h" 3 4 #define HEADER_OPENSSL_TYPES_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 59 "/usr/include/openssl/ossl_typ.h" 2 3 4 # 79 "/usr/include/openssl/ossl_typ.h" 3 4 typedef struct asn1_string_st ASN1_INTEGER; typedef struct asn1_string_st ASN1_ENUMERATED; typedef struct asn1_string_st ASN1_BIT_STRING; typedef struct asn1_string_st ASN1_OCTET_STRING; typedef struct asn1_string_st ASN1_PRINTABLESTRING; typedef struct asn1_string_st ASN1_T61STRING; typedef struct asn1_string_st ASN1_IA5STRING; typedef struct asn1_string_st ASN1_GENERALSTRING; typedef struct asn1_string_st ASN1_UNIVERSALSTRING; typedef struct asn1_string_st ASN1_BMPSTRING; typedef struct asn1_string_st ASN1_UTCTIME; typedef struct asn1_string_st ASN1_TIME; typedef struct asn1_string_st ASN1_GENERALIZEDTIME; typedef struct asn1_string_st ASN1_VISIBLESTRING; typedef struct asn1_string_st ASN1_UTF8STRING; typedef struct asn1_string_st ASN1_STRING; typedef int ASN1_BOOLEAN; typedef int ASN1_NULL; typedef struct ASN1_ITEM_st ASN1_ITEM; typedef struct asn1_pctx_st ASN1_PCTX; # 114 "/usr/include/openssl/ossl_typ.h" 3 4 typedef struct bignum_st BIGNUM; typedef struct bignum_ctx BN_CTX; typedef struct bn_blinding_st BN_BLINDING; typedef struct bn_mont_ctx_st BN_MONT_CTX; typedef struct bn_recp_ctx_st BN_RECP_CTX; typedef struct bn_gencb_st BN_GENCB; typedef struct buf_mem_st BUF_MEM; typedef struct evp_cipher_st EVP_CIPHER; typedef struct evp_cipher_ctx_st EVP_CIPHER_CTX; typedef struct env_md_st EVP_MD; typedef struct env_md_ctx_st EVP_MD_CTX; typedef struct evp_pkey_st EVP_PKEY; typedef struct evp_pkey_asn1_method_st EVP_PKEY_ASN1_METHOD; typedef struct evp_pkey_method_st EVP_PKEY_METHOD; typedef struct evp_pkey_ctx_st EVP_PKEY_CTX; typedef struct dh_st DH; typedef struct dh_method DH_METHOD; typedef struct dsa_st DSA; typedef struct dsa_method DSA_METHOD; typedef struct rsa_st RSA; typedef struct rsa_meth_st RSA_METHOD; typedef struct rand_meth_st RAND_METHOD; typedef struct ecdh_method ECDH_METHOD; typedef struct ecdsa_method ECDSA_METHOD; typedef struct x509_st X509; typedef struct X509_algor_st X509_ALGOR; typedef struct X509_crl_st X509_CRL; typedef struct x509_crl_method_st X509_CRL_METHOD; typedef struct x509_revoked_st X509_REVOKED; typedef struct X509_name_st X509_NAME; typedef struct X509_pubkey_st X509_PUBKEY; typedef struct x509_store_st X509_STORE; typedef struct x509_store_ctx_st X509_STORE_CTX; typedef struct pkcs8_priv_key_info_st PKCS8_PRIV_KEY_INFO; typedef struct v3_ext_ctx X509V3_CTX; typedef struct conf_st CONF; typedef struct store_st STORE; typedef struct store_method_st STORE_METHOD; typedef struct ui_st UI; typedef struct ui_method_st UI_METHOD; typedef struct st_ERR_FNS ERR_FNS; typedef struct engine_st ENGINE; typedef struct ssl_st SSL; typedef struct ssl_ctx_st SSL_CTX; typedef struct X509_POLICY_NODE_st X509_POLICY_NODE; typedef struct X509_POLICY_LEVEL_st X509_POLICY_LEVEL; typedef struct X509_POLICY_TREE_st X509_POLICY_TREE; typedef struct X509_POLICY_CACHE_st X509_POLICY_CACHE; typedef struct AUTHORITY_KEYID_st AUTHORITY_KEYID; typedef struct DIST_POINT_st DIST_POINT; typedef struct ISSUING_DIST_POINT_st ISSUING_DIST_POINT; typedef struct NAME_CONSTRAINTS_st NAME_CONSTRAINTS; #define DECLARE_PKCS12_STACK_OF(type) #define IMPLEMENT_PKCS12_STACK_OF(type) typedef struct crypto_ex_data_st CRYPTO_EX_DATA; typedef int CRYPTO_EX_new(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef void CRYPTO_EX_free(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef int CRYPTO_EX_dup(CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from, void *from_d, int idx, long argl, void *argp); typedef struct ocsp_req_ctx_st OCSP_REQ_CTX; typedef struct ocsp_response_st OCSP_RESPONSE; typedef struct ocsp_responder_id_st OCSP_RESPID; # 132 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 56 "/usr/include/openssl/symhacks.h" 3 4 #define HEADER_SYMHACKS_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 59 "/usr/include/openssl/symhacks.h" 2 3 4 # 140 "/usr/include/openssl/crypto.h" 2 3 4 # 148 "/usr/include/openssl/crypto.h" 3 4 #define SSLEAY_VERSION_NUMBER OPENSSL_VERSION_NUMBER #define SSLEAY_VERSION 0 #define SSLEAY_CFLAGS 2 #define SSLEAY_BUILT_ON 3 #define SSLEAY_PLATFORM 4 #define SSLEAY_DIR 5 # 171 "/usr/include/openssl/crypto.h" 3 4 typedef struct openssl_item_st { int code; void *value; size_t value_size; size_t *value_length; } OPENSSL_ITEM; #define CRYPTO_LOCK_ERR 1 #define CRYPTO_LOCK_EX_DATA 2 #define CRYPTO_LOCK_X509 3 #define CRYPTO_LOCK_X509_INFO 4 #define CRYPTO_LOCK_X509_PKEY 5 #define CRYPTO_LOCK_X509_CRL 6 #define CRYPTO_LOCK_X509_REQ 7 #define CRYPTO_LOCK_DSA 8 #define CRYPTO_LOCK_RSA 9 #define CRYPTO_LOCK_EVP_PKEY 10 #define CRYPTO_LOCK_X509_STORE 11 #define CRYPTO_LOCK_SSL_CTX 12 #define CRYPTO_LOCK_SSL_CERT 13 #define CRYPTO_LOCK_SSL_SESSION 14 #define CRYPTO_LOCK_SSL_SESS_CERT 15 #define CRYPTO_LOCK_SSL 16 #define CRYPTO_LOCK_SSL_METHOD 17 #define CRYPTO_LOCK_RAND 18 #define CRYPTO_LOCK_RAND2 19 #define CRYPTO_LOCK_MALLOC 20 #define CRYPTO_LOCK_BIO 21 #define CRYPTO_LOCK_GETHOSTBYNAME 22 #define CRYPTO_LOCK_GETSERVBYNAME 23 #define CRYPTO_LOCK_READDIR 24 #define CRYPTO_LOCK_RSA_BLINDING 25 #define CRYPTO_LOCK_DH 26 #define CRYPTO_LOCK_MALLOC2 27 #define CRYPTO_LOCK_DSO 28 #define CRYPTO_LOCK_DYNLOCK 29 #define CRYPTO_LOCK_ENGINE 30 #define CRYPTO_LOCK_UI 31 #define CRYPTO_LOCK_ECDSA 32 #define CRYPTO_LOCK_EC 33 #define CRYPTO_LOCK_ECDH 34 #define CRYPTO_LOCK_BN 35 #define CRYPTO_LOCK_EC_PRE_COMP 36 #define CRYPTO_LOCK_STORE 37 #define CRYPTO_LOCK_COMP 38 #define CRYPTO_LOCK_FIPS 39 #define CRYPTO_LOCK_FIPS2 40 #define CRYPTO_NUM_LOCKS 41 #define CRYPTO_LOCK 1 #define CRYPTO_UNLOCK 2 #define CRYPTO_READ 4 #define CRYPTO_WRITE 8 #define CRYPTO_w_lock(type) CRYPTO_lock(CRYPTO_LOCK|CRYPTO_WRITE,type,__FILE__,__LINE__) #define CRYPTO_w_unlock(type) CRYPTO_lock(CRYPTO_UNLOCK|CRYPTO_WRITE,type,__FILE__,__LINE__) #define CRYPTO_r_lock(type) CRYPTO_lock(CRYPTO_LOCK|CRYPTO_READ,type,__FILE__,__LINE__) #define CRYPTO_r_unlock(type) CRYPTO_lock(CRYPTO_UNLOCK|CRYPTO_READ,type,__FILE__,__LINE__) #define CRYPTO_add(addr,amount,type) CRYPTO_add_lock(addr,amount,type,__FILE__,__LINE__) # 256 "/usr/include/openssl/crypto.h" 3 4 typedef struct { int references; struct CRYPTO_dynlock_value *data; } CRYPTO_dynlock; #define CRYPTO_MEM_CHECK_OFF 0x0 #define CRYPTO_MEM_CHECK_ON 0x1 #define CRYPTO_MEM_CHECK_ENABLE 0x2 #define CRYPTO_MEM_CHECK_DISABLE 0x3 #define V_CRYPTO_MDEBUG_TIME 0x1 #define V_CRYPTO_MDEBUG_THREAD 0x2 #define V_CRYPTO_MDEBUG_ALL (V_CRYPTO_MDEBUG_TIME | V_CRYPTO_MDEBUG_THREAD) typedef struct bio_st BIO_dummy; struct crypto_ex_data_st { struct stack_st_void *sk; int dummy; }; struct stack_st_void { _STACK stack; }; typedef struct crypto_ex_data_func_st { long argl; void *argp; CRYPTO_EX_new *new_func; CRYPTO_EX_free *free_func; CRYPTO_EX_dup *dup_func; } CRYPTO_EX_DATA_FUNCS; struct stack_st_CRYPTO_EX_DATA_FUNCS { _STACK stack; }; #define CRYPTO_EX_INDEX_BIO 0 #define CRYPTO_EX_INDEX_SSL 1 #define CRYPTO_EX_INDEX_SSL_CTX 2 #define CRYPTO_EX_INDEX_SSL_SESSION 3 #define CRYPTO_EX_INDEX_X509_STORE 4 #define CRYPTO_EX_INDEX_X509_STORE_CTX 5 #define CRYPTO_EX_INDEX_RSA 6 #define CRYPTO_EX_INDEX_DSA 7 #define CRYPTO_EX_INDEX_DH 8 #define CRYPTO_EX_INDEX_ENGINE 9 #define CRYPTO_EX_INDEX_X509 10 #define CRYPTO_EX_INDEX_UI 11 #define CRYPTO_EX_INDEX_ECDSA 12 #define CRYPTO_EX_INDEX_ECDH 13 #define CRYPTO_EX_INDEX_COMP 14 #define CRYPTO_EX_INDEX_STORE 15 #define CRYPTO_EX_INDEX_USER 100 #define CRYPTO_malloc_init() CRYPTO_set_mem_functions( malloc, realloc, free) # 347 "/usr/include/openssl/crypto.h" 3 4 #define CRYPTO_malloc_debug_init() do { CRYPTO_set_mem_debug_functions( CRYPTO_dbg_malloc, CRYPTO_dbg_realloc, CRYPTO_dbg_free, CRYPTO_dbg_set_options, CRYPTO_dbg_get_options); } while(0) # 356 "/usr/include/openssl/crypto.h" 3 4 int CRYPTO_mem_ctrl(int mode); int CRYPTO_is_mem_check_on(void); #define MemCheck_start() CRYPTO_mem_ctrl(CRYPTO_MEM_CHECK_ON) #define MemCheck_stop() CRYPTO_mem_ctrl(CRYPTO_MEM_CHECK_OFF) #define MemCheck_on() CRYPTO_mem_ctrl(CRYPTO_MEM_CHECK_ENABLE) #define MemCheck_off() CRYPTO_mem_ctrl(CRYPTO_MEM_CHECK_DISABLE) #define is_MemCheck_on() CRYPTO_is_mem_check_on() #define OPENSSL_malloc(num) CRYPTO_malloc((int)num,__FILE__,__LINE__) #define OPENSSL_strdup(str) CRYPTO_strdup((str),__FILE__,__LINE__) #define OPENSSL_realloc(addr,num) CRYPTO_realloc((char *)addr,(int)num,__FILE__,__LINE__) #define OPENSSL_realloc_clean(addr,old_num,num) CRYPTO_realloc_clean(addr,old_num,num,__FILE__,__LINE__) #define OPENSSL_remalloc(addr,num) CRYPTO_remalloc((char **)addr,(int)num,__FILE__,__LINE__) #define OPENSSL_freeFunc CRYPTO_free #define OPENSSL_free(addr) CRYPTO_free(addr) #define OPENSSL_malloc_locked(num) CRYPTO_malloc_locked((int)num,__FILE__,__LINE__) #define OPENSSL_free_locked(addr) CRYPTO_free_locked(addr) const char *SSLeay_version(int type); unsigned long SSLeay(void); int OPENSSL_issetugid(void); typedef struct st_CRYPTO_EX_DATA_IMPL CRYPTO_EX_DATA_IMPL; const CRYPTO_EX_DATA_IMPL *CRYPTO_get_ex_data_implementation(void); int CRYPTO_set_ex_data_implementation(const CRYPTO_EX_DATA_IMPL *i); int CRYPTO_ex_data_new_class(void); int CRYPTO_get_ex_new_index(int class_index, long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int CRYPTO_new_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad); int CRYPTO_dup_ex_data(int class_index, CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from); void CRYPTO_free_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad); int CRYPTO_set_ex_data(CRYPTO_EX_DATA *ad, int idx, void *val); void *CRYPTO_get_ex_data(const CRYPTO_EX_DATA *ad,int idx); void CRYPTO_cleanup_all_ex_data(void); int CRYPTO_get_new_lockid(char *name); int CRYPTO_num_locks(void); void CRYPTO_lock(int mode, int type,const char *file,int line); void CRYPTO_set_locking_callback(void (*func)(int mode,int type, const char *file,int line)); void (*CRYPTO_get_locking_callback(void))(int mode,int type,const char *file, int line); void CRYPTO_set_add_lock_callback(int (*func)(int *num,int mount,int type, const char *file, int line)); int (*CRYPTO_get_add_lock_callback(void))(int *num,int mount,int type, const char *file,int line); typedef struct crypto_threadid_st { void *ptr; unsigned long val; } CRYPTO_THREADID; void CRYPTO_THREADID_set_numeric(CRYPTO_THREADID *id, unsigned long val); void CRYPTO_THREADID_set_pointer(CRYPTO_THREADID *id, void *ptr); int CRYPTO_THREADID_set_callback(void (*threadid_func)(CRYPTO_THREADID *)); void (*CRYPTO_THREADID_get_callback(void))(CRYPTO_THREADID *); void CRYPTO_THREADID_current(CRYPTO_THREADID *id); int CRYPTO_THREADID_cmp(const CRYPTO_THREADID *a, const CRYPTO_THREADID *b); void CRYPTO_THREADID_cpy(CRYPTO_THREADID *dest, const CRYPTO_THREADID *src); unsigned long CRYPTO_THREADID_hash(const CRYPTO_THREADID *id); void CRYPTO_set_id_callback(unsigned long (*func)(void)); unsigned long (*CRYPTO_get_id_callback(void))(void); unsigned long CRYPTO_thread_id(void); const char *CRYPTO_get_lock_name(int type); int CRYPTO_add_lock(int *pointer,int amount,int type, const char *file, int line); int CRYPTO_get_new_dynlockid(void); void CRYPTO_destroy_dynlockid(int i); struct CRYPTO_dynlock_value *CRYPTO_get_dynlock_value(int i); void CRYPTO_set_dynlock_create_callback(struct CRYPTO_dynlock_value *(*dyn_create_function)(const char *file, int line)); void CRYPTO_set_dynlock_lock_callback(void (*dyn_lock_function)(int mode, struct CRYPTO_dynlock_value *l, const char *file, int line)); void CRYPTO_set_dynlock_destroy_callback(void (*dyn_destroy_function)(struct CRYPTO_dynlock_value *l, const char *file, int line)); struct CRYPTO_dynlock_value *(*CRYPTO_get_dynlock_create_callback(void))(const char *file,int line); void (*CRYPTO_get_dynlock_lock_callback(void))(int mode, struct CRYPTO_dynlock_value *l, const char *file,int line); void (*CRYPTO_get_dynlock_destroy_callback(void))(struct CRYPTO_dynlock_value *l, const char *file,int line); int CRYPTO_set_mem_functions(void *(*m)(size_t),void *(*r)(void *,size_t), void (*f)(void *)); int CRYPTO_set_locked_mem_functions(void *(*m)(size_t), void (*free_func)(void *)); int CRYPTO_set_mem_ex_functions(void *(*m)(size_t,const char *,int), void *(*r)(void *,size_t,const char *,int), void (*f)(void *)); int CRYPTO_set_locked_mem_ex_functions(void *(*m)(size_t,const char *,int), void (*free_func)(void *)); int CRYPTO_set_mem_debug_functions(void (*m)(void *,int,const char *,int,int), void (*r)(void *,void *,int,const char *,int,int), void (*f)(void *,int), void (*so)(long), long (*go)(void)); void CRYPTO_get_mem_functions(void *(**m)(size_t),void *(**r)(void *, size_t), void (**f)(void *)); void CRYPTO_get_locked_mem_functions(void *(**m)(size_t), void (**f)(void *)); void CRYPTO_get_mem_ex_functions(void *(**m)(size_t,const char *,int), void *(**r)(void *, size_t,const char *,int), void (**f)(void *)); void CRYPTO_get_locked_mem_ex_functions(void *(**m)(size_t,const char *,int), void (**f)(void *)); void CRYPTO_get_mem_debug_functions(void (**m)(void *,int,const char *,int,int), void (**r)(void *,void *,int,const char *,int,int), void (**f)(void *,int), void (**so)(long), long (**go)(void)); void *CRYPTO_malloc_locked(int num, const char *file, int line); void CRYPTO_free_locked(void *); void *CRYPTO_malloc(int num, const char *file, int line); char *CRYPTO_strdup(const char *str, const char *file, int line); void CRYPTO_free(void *); void *CRYPTO_realloc(void *addr,int num, const char *file, int line); void *CRYPTO_realloc_clean(void *addr,int old_num,int num,const char *file, int line); void *CRYPTO_remalloc(void *addr,int num, const char *file, int line); void OPENSSL_cleanse(void *ptr, size_t len); void CRYPTO_set_mem_debug_options(long bits); long CRYPTO_get_mem_debug_options(void); #define CRYPTO_push_info(info) CRYPTO_push_info_(info, __FILE__, __LINE__); int CRYPTO_push_info_(const char *info, const char *file, int line); int CRYPTO_pop_info(void); int CRYPTO_remove_all_info(void); # 519 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_dbg_malloc(void *addr,int num,const char *file,int line,int before_p); void CRYPTO_dbg_realloc(void *addr1,void *addr2,int num,const char *file,int line,int before_p); void CRYPTO_dbg_free(void *addr,int before_p); # 530 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_dbg_set_options(long bits); long CRYPTO_dbg_get_options(void); void CRYPTO_mem_leaks_fp(FILE *); void CRYPTO_mem_leaks(struct bio_st *bio); typedef void *CRYPTO_MEM_LEAK_CB(unsigned long, const char *, int, int, void *); void CRYPTO_mem_leaks_cb(CRYPTO_MEM_LEAK_CB *cb); void OpenSSLDie(const char *file,int line,const char *assertion); #define OPENSSL_assert(e) (void)((e) ? 0 : (OpenSSLDie(__FILE__, __LINE__, #e),1)) unsigned long *OPENSSL_ia32cap_loc(void); #define OPENSSL_ia32cap (*(OPENSSL_ia32cap_loc())) int OPENSSL_isservice(void); int FIPS_mode(void); int FIPS_mode_set(int r); void OPENSSL_init(void); #define fips_md_init(alg) fips_md_init_ctx(alg, alg) # 572 "/usr/include/openssl/crypto.h" 3 4 #define fips_md_init_ctx(alg,cx) int alg ##_Init(cx ##_CTX *c) #define fips_cipher_abort(alg) while(0) int CRYPTO_memcmp(const void *a, const void *b, size_t len); void ERR_load_CRYPTO_strings(void); #define CRYPTO_F_CRYPTO_GET_EX_NEW_INDEX 100 #define CRYPTO_F_CRYPTO_GET_NEW_DYNLOCKID 103 #define CRYPTO_F_CRYPTO_GET_NEW_LOCKID 101 #define CRYPTO_F_CRYPTO_SET_EX_DATA 102 #define CRYPTO_F_DEF_ADD_INDEX 104 #define CRYPTO_F_DEF_GET_CLASS 105 #define CRYPTO_F_FIPS_MODE_SET 109 #define CRYPTO_F_INT_DUP_EX_DATA 106 #define CRYPTO_F_INT_FREE_EX_DATA 107 #define CRYPTO_F_INT_NEW_EX_DATA 108 #define CRYPTO_R_FIPS_MODE_NOT_SUPPORTED 101 #define CRYPTO_R_NO_DYNLOCK_CREATE_CALLBACK 100 # 6 "/usr/include/openssl/comp.h" 2 3 4 typedef struct comp_ctx_st COMP_CTX; typedef struct comp_method_st { int type; const char *name; int (*init)(COMP_CTX *ctx); void (*finish)(COMP_CTX *ctx); int (*compress)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen); int (*expand)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen); long (*ctrl)(void); long (*callback_ctrl)(void); } COMP_METHOD; struct comp_ctx_st { COMP_METHOD *meth; unsigned long compress_in; unsigned long compress_out; unsigned long expand_in; unsigned long expand_out; CRYPTO_EX_DATA ex_data; }; COMP_CTX *COMP_CTX_new(COMP_METHOD *meth); void COMP_CTX_free(COMP_CTX *ctx); int COMP_compress_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen); int COMP_expand_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen); COMP_METHOD *COMP_rle(void ); COMP_METHOD *COMP_zlib(void ); void COMP_zlib_cleanup(void); # 62 "/usr/include/openssl/comp.h" 3 4 void ERR_load_COMP_strings(void); #define COMP_F_BIO_ZLIB_FLUSH 99 #define COMP_F_BIO_ZLIB_NEW 100 #define COMP_F_BIO_ZLIB_READ 101 #define COMP_F_BIO_ZLIB_WRITE 102 #define COMP_R_ZLIB_DEFLATE_ERROR 99 #define COMP_R_ZLIB_INFLATE_ERROR 100 #define COMP_R_ZLIB_NOT_SUPPORTED 101 # 150 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/bio.h" 1 3 4 # 60 "/usr/include/openssl/bio.h" 3 4 #define HEADER_BIO_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/bio.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 1 3 4 # 31 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 #define _STDARG_H #define _ANSI_STDARG_H_ #undef __need___va_list # 47 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 #define va_start(v,l) __builtin_va_start(v,l) #define va_end(v) __builtin_va_end(v) #define va_arg(v,l) __builtin_va_arg(v,l) #define va_copy(d,s) __builtin_va_copy(d,s) #define __va_copy(d,s) __builtin_va_copy(d,s) # 108 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stdarg.h" 3 4 #define _VA_LIST_ #define _VA_LIST #define _VA_LIST_T_H #define __va_list__ # 68 "/usr/include/openssl/bio.h" 2 3 4 # 84 "/usr/include/openssl/bio.h" 3 4 #define BIO_TYPE_NONE 0 #define BIO_TYPE_MEM (1|0x0400) #define BIO_TYPE_FILE (2|0x0400) #define BIO_TYPE_FD (4|0x0400|0x0100) #define BIO_TYPE_SOCKET (5|0x0400|0x0100) #define BIO_TYPE_NULL (6|0x0400) #define BIO_TYPE_SSL (7|0x0200) #define BIO_TYPE_MD (8|0x0200) #define BIO_TYPE_BUFFER (9|0x0200) #define BIO_TYPE_CIPHER (10|0x0200) #define BIO_TYPE_BASE64 (11|0x0200) #define BIO_TYPE_CONNECT (12|0x0400|0x0100) #define BIO_TYPE_ACCEPT (13|0x0400|0x0100) #define BIO_TYPE_PROXY_CLIENT (14|0x0200) #define BIO_TYPE_PROXY_SERVER (15|0x0200) #define BIO_TYPE_NBIO_TEST (16|0x0200) #define BIO_TYPE_NULL_FILTER (17|0x0200) #define BIO_TYPE_BER (18|0x0200) #define BIO_TYPE_BIO (19|0x0400) #define BIO_TYPE_LINEBUFFER (20|0x0200) #define BIO_TYPE_DGRAM (21|0x0400|0x0100) #define BIO_TYPE_ASN1 (22|0x0200) #define BIO_TYPE_COMP (23|0x0200) #define BIO_TYPE_DESCRIPTOR 0x0100 #define BIO_TYPE_FILTER 0x0200 #define BIO_TYPE_SOURCE_SINK 0x0400 #define BIO_NOCLOSE 0x00 #define BIO_CLOSE 0x01 #define BIO_CTRL_RESET 1 #define BIO_CTRL_EOF 2 #define BIO_CTRL_INFO 3 #define BIO_CTRL_SET 4 #define BIO_CTRL_GET 5 #define BIO_CTRL_PUSH 6 #define BIO_CTRL_POP 7 #define BIO_CTRL_GET_CLOSE 8 #define BIO_CTRL_SET_CLOSE 9 #define BIO_CTRL_PENDING 10 #define BIO_CTRL_FLUSH 11 #define BIO_CTRL_DUP 12 #define BIO_CTRL_WPENDING 13 #define BIO_CTRL_SET_CALLBACK 14 #define BIO_CTRL_GET_CALLBACK 15 #define BIO_CTRL_SET_FILENAME 30 #define BIO_CTRL_DGRAM_CONNECT 31 #define BIO_CTRL_DGRAM_SET_CONNECTED 32 #define BIO_CTRL_DGRAM_SET_RECV_TIMEOUT 33 #define BIO_CTRL_DGRAM_GET_RECV_TIMEOUT 34 #define BIO_CTRL_DGRAM_SET_SEND_TIMEOUT 35 #define BIO_CTRL_DGRAM_GET_SEND_TIMEOUT 36 #define BIO_CTRL_DGRAM_GET_RECV_TIMER_EXP 37 #define BIO_CTRL_DGRAM_GET_SEND_TIMER_EXP 38 #define BIO_CTRL_DGRAM_MTU_DISCOVER 39 #define BIO_CTRL_DGRAM_QUERY_MTU 40 #define BIO_CTRL_DGRAM_GET_FALLBACK_MTU 47 #define BIO_CTRL_DGRAM_GET_MTU 41 #define BIO_CTRL_DGRAM_SET_MTU 42 #define BIO_CTRL_DGRAM_MTU_EXCEEDED 43 #define BIO_CTRL_DGRAM_GET_PEER 46 #define BIO_CTRL_DGRAM_SET_PEER 44 #define BIO_CTRL_DGRAM_SET_NEXT_TIMEOUT 45 # 194 "/usr/include/openssl/bio.h" 3 4 #define BIO_FP_READ 0x02 #define BIO_FP_WRITE 0x04 #define BIO_FP_APPEND 0x08 #define BIO_FP_TEXT 0x10 #define BIO_FLAGS_READ 0x01 #define BIO_FLAGS_WRITE 0x02 #define BIO_FLAGS_IO_SPECIAL 0x04 #define BIO_FLAGS_RWS (BIO_FLAGS_READ|BIO_FLAGS_WRITE|BIO_FLAGS_IO_SPECIAL) #define BIO_FLAGS_SHOULD_RETRY 0x08 #define BIO_FLAGS_UPLINK 0 #define BIO_GHBN_CTRL_HITS 1 #define BIO_GHBN_CTRL_MISSES 2 #define BIO_GHBN_CTRL_CACHE_SIZE 3 #define BIO_GHBN_CTRL_GET_ENTRY 4 #define BIO_GHBN_CTRL_FLUSH 5 # 224 "/usr/include/openssl/bio.h" 3 4 #define BIO_FLAGS_BASE64_NO_NL 0x100 #define BIO_FLAGS_MEM_RDONLY 0x200 typedef struct bio_st BIO; void BIO_set_flags(BIO *b, int flags); int BIO_test_flags(const BIO *b, int flags); void BIO_clear_flags(BIO *b, int flags); #define BIO_get_flags(b) BIO_test_flags(b, ~(0x0)) #define BIO_set_retry_special(b) BIO_set_flags(b, (BIO_FLAGS_IO_SPECIAL|BIO_FLAGS_SHOULD_RETRY)) #define BIO_set_retry_read(b) BIO_set_flags(b, (BIO_FLAGS_READ|BIO_FLAGS_SHOULD_RETRY)) #define BIO_set_retry_write(b) BIO_set_flags(b, (BIO_FLAGS_WRITE|BIO_FLAGS_SHOULD_RETRY)) #define BIO_clear_retry_flags(b) BIO_clear_flags(b, (BIO_FLAGS_RWS|BIO_FLAGS_SHOULD_RETRY)) #define BIO_get_retry_flags(b) BIO_test_flags(b, (BIO_FLAGS_RWS|BIO_FLAGS_SHOULD_RETRY)) #define BIO_should_read(a) BIO_test_flags(a, BIO_FLAGS_READ) #define BIO_should_write(a) BIO_test_flags(a, BIO_FLAGS_WRITE) #define BIO_should_io_special(a) BIO_test_flags(a, BIO_FLAGS_IO_SPECIAL) #define BIO_retry_type(a) BIO_test_flags(a, BIO_FLAGS_RWS) #define BIO_should_retry(a) BIO_test_flags(a, BIO_FLAGS_SHOULD_RETRY) #define BIO_RR_SSL_X509_LOOKUP 0x01 #define BIO_RR_CONNECT 0x02 #define BIO_RR_ACCEPT 0x03 #define BIO_CB_FREE 0x01 #define BIO_CB_READ 0x02 #define BIO_CB_WRITE 0x03 #define BIO_CB_PUTS 0x04 #define BIO_CB_GETS 0x05 #define BIO_CB_CTRL 0x06 #define BIO_CB_RETURN 0x80 #define BIO_CB_return(a) ((a)|BIO_CB_RETURN)) #define BIO_cb_pre(a) (!((a)&BIO_CB_RETURN)) #define BIO_cb_post(a) ((a)&BIO_CB_RETURN) long (*BIO_get_callback(const BIO *b)) (struct bio_st *,int,const char *,int, long,long); void BIO_set_callback(BIO *b, long (*callback)(struct bio_st *,int,const char *,int, long,long)); char *BIO_get_callback_arg(const BIO *b); void BIO_set_callback_arg(BIO *b, char *arg); const char * BIO_method_name(const BIO *b); int BIO_method_type(const BIO *b); typedef void bio_info_cb(struct bio_st *, int, const char *, int, long, long); typedef struct bio_method_st { int type; const char *name; int (*bwrite)(BIO *, const char *, int); int (*bread)(BIO *, char *, int); int (*bputs)(BIO *, const char *); int (*bgets)(BIO *, char *, int); long (*ctrl)(BIO *, int, long, void *); int (*create)(BIO *); int (*destroy)(BIO *); long (*callback_ctrl)(BIO *, int, bio_info_cb *); } BIO_METHOD; struct bio_st { BIO_METHOD *method; long (*callback)(struct bio_st *,int,const char *,int, long,long); char *cb_arg; int init; int shutdown; int flags; int retry_reason; int num; void *ptr; struct bio_st *next_bio; struct bio_st *prev_bio; int references; unsigned long num_read; unsigned long num_write; CRYPTO_EX_DATA ex_data; }; struct stack_st_BIO { _STACK stack; }; typedef struct bio_f_buffer_ctx_struct { # 346 "/usr/include/openssl/bio.h" 3 4 int ibuf_size; int obuf_size; char *ibuf; int ibuf_len; int ibuf_off; char *obuf; int obuf_len; int obuf_off; } BIO_F_BUFFER_CTX; typedef int asn1_ps_func(BIO *b, unsigned char **pbuf, int *plen, void *parg); # 390 "/usr/include/openssl/bio.h" 3 4 #define BIO_CONN_S_BEFORE 1 #define BIO_CONN_S_GET_IP 2 #define BIO_CONN_S_GET_PORT 3 #define BIO_CONN_S_CREATE_SOCKET 4 #define BIO_CONN_S_CONNECT 5 #define BIO_CONN_S_OK 6 #define BIO_CONN_S_BLOCKED_CONNECT 7 #define BIO_CONN_S_NBIO 8 #define BIO_C_SET_CONNECT 100 #define BIO_C_DO_STATE_MACHINE 101 #define BIO_C_SET_NBIO 102 #define BIO_C_SET_PROXY_PARAM 103 #define BIO_C_SET_FD 104 #define BIO_C_GET_FD 105 #define BIO_C_SET_FILE_PTR 106 #define BIO_C_GET_FILE_PTR 107 #define BIO_C_SET_FILENAME 108 #define BIO_C_SET_SSL 109 #define BIO_C_GET_SSL 110 #define BIO_C_SET_MD 111 #define BIO_C_GET_MD 112 #define BIO_C_GET_CIPHER_STATUS 113 #define BIO_C_SET_BUF_MEM 114 #define BIO_C_GET_BUF_MEM_PTR 115 #define BIO_C_GET_BUFF_NUM_LINES 116 #define BIO_C_SET_BUFF_SIZE 117 #define BIO_C_SET_ACCEPT 118 #define BIO_C_SSL_MODE 119 #define BIO_C_GET_MD_CTX 120 #define BIO_C_GET_PROXY_PARAM 121 #define BIO_C_SET_BUFF_READ_DATA 122 #define BIO_C_GET_CONNECT 123 #define BIO_C_GET_ACCEPT 124 #define BIO_C_SET_SSL_RENEGOTIATE_BYTES 125 #define BIO_C_GET_SSL_NUM_RENEGOTIATES 126 #define BIO_C_SET_SSL_RENEGOTIATE_TIMEOUT 127 #define BIO_C_FILE_SEEK 128 #define BIO_C_GET_CIPHER_CTX 129 #define BIO_C_SET_BUF_MEM_EOF_RETURN 130 #define BIO_C_SET_BIND_MODE 131 #define BIO_C_GET_BIND_MODE 132 #define BIO_C_FILE_TELL 133 #define BIO_C_GET_SOCKS 134 #define BIO_C_SET_SOCKS 135 #define BIO_C_SET_WRITE_BUF_SIZE 136 #define BIO_C_GET_WRITE_BUF_SIZE 137 #define BIO_C_MAKE_BIO_PAIR 138 #define BIO_C_DESTROY_BIO_PAIR 139 #define BIO_C_GET_WRITE_GUARANTEE 140 #define BIO_C_GET_READ_REQUEST 141 #define BIO_C_SHUTDOWN_WR 142 #define BIO_C_NREAD0 143 #define BIO_C_NREAD 144 #define BIO_C_NWRITE0 145 #define BIO_C_NWRITE 146 #define BIO_C_RESET_READ_REQUEST 147 #define BIO_C_SET_MD_CTX 148 #define BIO_C_SET_PREFIX 149 #define BIO_C_GET_PREFIX 150 #define BIO_C_SET_SUFFIX 151 #define BIO_C_GET_SUFFIX 152 #define BIO_C_SET_EX_ARG 153 #define BIO_C_GET_EX_ARG 154 #define BIO_set_app_data(s,arg) BIO_set_ex_data(s,0,arg) #define BIO_get_app_data(s) BIO_get_ex_data(s,0) #define BIO_set_conn_hostname(b,name) BIO_ctrl(b,BIO_C_SET_CONNECT,0,(char *)name) #define BIO_set_conn_port(b,port) BIO_ctrl(b,BIO_C_SET_CONNECT,1,(char *)port) #define BIO_set_conn_ip(b,ip) BIO_ctrl(b,BIO_C_SET_CONNECT,2,(char *)ip) #define BIO_set_conn_int_port(b,port) BIO_ctrl(b,BIO_C_SET_CONNECT,3,(char *)port) #define BIO_get_conn_hostname(b) BIO_ptr_ctrl(b,BIO_C_GET_CONNECT,0) #define BIO_get_conn_port(b) BIO_ptr_ctrl(b,BIO_C_GET_CONNECT,1) #define BIO_get_conn_ip(b) BIO_ptr_ctrl(b,BIO_C_GET_CONNECT,2) #define BIO_get_conn_int_port(b) BIO_int_ctrl(b,BIO_C_GET_CONNECT,3,0) #define BIO_set_nbio(b,n) BIO_ctrl(b,BIO_C_SET_NBIO,(n),NULL) #define BIO_set_accept_port(b,name) BIO_ctrl(b,BIO_C_SET_ACCEPT,0,(char *)name) #define BIO_get_accept_port(b) BIO_ptr_ctrl(b,BIO_C_GET_ACCEPT,0) #define BIO_set_nbio_accept(b,n) BIO_ctrl(b,BIO_C_SET_ACCEPT,1,(n)?(void *)"a":NULL) #define BIO_set_accept_bios(b,bio) BIO_ctrl(b,BIO_C_SET_ACCEPT,2,(char *)bio) #define BIO_BIND_NORMAL 0 #define BIO_BIND_REUSEADDR_IF_UNUSED 1 #define BIO_BIND_REUSEADDR 2 #define BIO_set_bind_mode(b,mode) BIO_ctrl(b,BIO_C_SET_BIND_MODE,mode,NULL) #define BIO_get_bind_mode(b,mode) BIO_ctrl(b,BIO_C_GET_BIND_MODE,0,NULL) #define BIO_do_connect(b) BIO_do_handshake(b) #define BIO_do_accept(b) BIO_do_handshake(b) #define BIO_do_handshake(b) BIO_ctrl(b,BIO_C_DO_STATE_MACHINE,0,NULL) #define BIO_set_url(b,url) BIO_ctrl(b,BIO_C_SET_PROXY_PARAM,0,(char *)(url)) #define BIO_set_proxies(b,p) BIO_ctrl(b,BIO_C_SET_PROXY_PARAM,1,(char *)(p)) #define BIO_set_filter_bio(b,s) BIO_ctrl(b,BIO_C_SET_PROXY_PARAM,2,(char *)(s)) #define BIO_set_proxy_cb(b,cb) BIO_callback_ctrl(b,BIO_C_SET_PROXY_PARAM,3,(void *(*cb)())) #define BIO_set_proxy_header(b,sk) BIO_ctrl(b,BIO_C_SET_PROXY_PARAM,4,(char *)sk) #define BIO_set_no_connect_return(b,bool) BIO_int_ctrl(b,BIO_C_SET_PROXY_PARAM,5,bool) #define BIO_get_proxy_header(b,skp) BIO_ctrl(b,BIO_C_GET_PROXY_PARAM,0,(char *)skp) #define BIO_get_proxies(b,pxy_p) BIO_ctrl(b,BIO_C_GET_PROXY_PARAM,1,(char *)(pxy_p)) #define BIO_get_url(b,url) BIO_ctrl(b,BIO_C_GET_PROXY_PARAM,2,(char *)(url)) #define BIO_get_no_connect_return(b) BIO_ctrl(b,BIO_C_GET_PROXY_PARAM,5,NULL) #define BIO_set_fd(b,fd,c) BIO_int_ctrl(b,BIO_C_SET_FD,c,fd) #define BIO_get_fd(b,c) BIO_ctrl(b,BIO_C_GET_FD,0,(char *)c) #define BIO_set_fp(b,fp,c) BIO_ctrl(b,BIO_C_SET_FILE_PTR,c,(char *)fp) #define BIO_get_fp(b,fpp) BIO_ctrl(b,BIO_C_GET_FILE_PTR,0,(char *)fpp) #define BIO_seek(b,ofs) (int)BIO_ctrl(b,BIO_C_FILE_SEEK,ofs,NULL) #define BIO_tell(b) (int)BIO_ctrl(b,BIO_C_FILE_TELL,0,NULL) # 524 "/usr/include/openssl/bio.h" 3 4 #define BIO_read_filename(b,name) BIO_ctrl(b,BIO_C_SET_FILENAME, BIO_CLOSE|BIO_FP_READ,(char *)name) #define BIO_write_filename(b,name) BIO_ctrl(b,BIO_C_SET_FILENAME, BIO_CLOSE|BIO_FP_WRITE,name) #define BIO_append_filename(b,name) BIO_ctrl(b,BIO_C_SET_FILENAME, BIO_CLOSE|BIO_FP_APPEND,name) #define BIO_rw_filename(b,name) BIO_ctrl(b,BIO_C_SET_FILENAME, BIO_CLOSE|BIO_FP_READ|BIO_FP_WRITE,name) #define BIO_set_ssl(b,ssl,c) BIO_ctrl(b,BIO_C_SET_SSL,c,(char *)ssl) #define BIO_get_ssl(b,sslp) BIO_ctrl(b,BIO_C_GET_SSL,0,(char *)sslp) #define BIO_set_ssl_mode(b,client) BIO_ctrl(b,BIO_C_SSL_MODE,client,NULL) #define BIO_set_ssl_renegotiate_bytes(b,num) BIO_ctrl(b,BIO_C_SET_SSL_RENEGOTIATE_BYTES,num,NULL); #define BIO_get_num_renegotiates(b) BIO_ctrl(b,BIO_C_GET_SSL_NUM_RENEGOTIATES,0,NULL); #define BIO_set_ssl_renegotiate_timeout(b,seconds) BIO_ctrl(b,BIO_C_SET_SSL_RENEGOTIATE_TIMEOUT,seconds,NULL); #define BIO_get_mem_data(b,pp) BIO_ctrl(b,BIO_CTRL_INFO,0,(char *)pp) #define BIO_set_mem_buf(b,bm,c) BIO_ctrl(b,BIO_C_SET_BUF_MEM,c,(char *)bm) #define BIO_get_mem_ptr(b,pp) BIO_ctrl(b,BIO_C_GET_BUF_MEM_PTR,0,(char *)pp) #define BIO_set_mem_eof_return(b,v) BIO_ctrl(b,BIO_C_SET_BUF_MEM_EOF_RETURN,v,NULL) #define BIO_get_buffer_num_lines(b) BIO_ctrl(b,BIO_C_GET_BUFF_NUM_LINES,0,NULL) #define BIO_set_buffer_size(b,size) BIO_ctrl(b,BIO_C_SET_BUFF_SIZE,size,NULL) #define BIO_set_read_buffer_size(b,size) BIO_int_ctrl(b,BIO_C_SET_BUFF_SIZE,size,0) #define BIO_set_write_buffer_size(b,size) BIO_int_ctrl(b,BIO_C_SET_BUFF_SIZE,size,1) #define BIO_set_buffer_read_data(b,buf,num) BIO_ctrl(b,BIO_C_SET_BUFF_READ_DATA,num,buf) #define BIO_dup_state(b,ret) BIO_ctrl(b,BIO_CTRL_DUP,0,(char *)(ret)) #define BIO_reset(b) (int)BIO_ctrl(b,BIO_CTRL_RESET,0,NULL) #define BIO_eof(b) (int)BIO_ctrl(b,BIO_CTRL_EOF,0,NULL) #define BIO_set_close(b,c) (int)BIO_ctrl(b,BIO_CTRL_SET_CLOSE,(c),NULL) #define BIO_get_close(b) (int)BIO_ctrl(b,BIO_CTRL_GET_CLOSE,0,NULL) #define BIO_pending(b) (int)BIO_ctrl(b,BIO_CTRL_PENDING,0,NULL) #define BIO_wpending(b) (int)BIO_ctrl(b,BIO_CTRL_WPENDING,0,NULL) size_t BIO_ctrl_pending(BIO *b); size_t BIO_ctrl_wpending(BIO *b); #define BIO_flush(b) (int)BIO_ctrl(b,BIO_CTRL_FLUSH,0,NULL) #define BIO_get_info_callback(b,cbp) (int)BIO_ctrl(b,BIO_CTRL_GET_CALLBACK,0, cbp) #define BIO_set_info_callback(b,cb) (int)BIO_callback_ctrl(b,BIO_CTRL_SET_CALLBACK,cb) #define BIO_buffer_get_num_lines(b) BIO_ctrl(b,BIO_CTRL_GET,0,NULL) #define BIO_set_write_buf_size(b,size) (int)BIO_ctrl(b,BIO_C_SET_WRITE_BUF_SIZE,size,NULL) #define BIO_get_write_buf_size(b,size) (size_t)BIO_ctrl(b,BIO_C_GET_WRITE_BUF_SIZE,size,NULL) #define BIO_make_bio_pair(b1,b2) (int)BIO_ctrl(b1,BIO_C_MAKE_BIO_PAIR,0,b2) #define BIO_destroy_bio_pair(b) (int)BIO_ctrl(b,BIO_C_DESTROY_BIO_PAIR,0,NULL) #define BIO_shutdown_wr(b) (int)BIO_ctrl(b, BIO_C_SHUTDOWN_WR, 0, NULL) #define BIO_get_write_guarantee(b) (int)BIO_ctrl(b,BIO_C_GET_WRITE_GUARANTEE,0,NULL) #define BIO_get_read_request(b) (int)BIO_ctrl(b,BIO_C_GET_READ_REQUEST,0,NULL) size_t BIO_ctrl_get_write_guarantee(BIO *b); size_t BIO_ctrl_get_read_request(BIO *b); int BIO_ctrl_reset_read_request(BIO *b); #define BIO_ctrl_dgram_connect(b,peer) (int)BIO_ctrl(b,BIO_CTRL_DGRAM_CONNECT,0, (char *)peer) #define BIO_ctrl_set_connected(b,state,peer) (int)BIO_ctrl(b, BIO_CTRL_DGRAM_SET_CONNECTED, state, (char *)peer) #define BIO_dgram_recv_timedout(b) (int)BIO_ctrl(b, BIO_CTRL_DGRAM_GET_RECV_TIMER_EXP, 0, NULL) #define BIO_dgram_send_timedout(b) (int)BIO_ctrl(b, BIO_CTRL_DGRAM_GET_SEND_TIMER_EXP, 0, NULL) #define BIO_dgram_get_peer(b,peer) (int)BIO_ctrl(b, BIO_CTRL_DGRAM_GET_PEER, 0, (char *)peer) #define BIO_dgram_set_peer(b,peer) (int)BIO_ctrl(b, BIO_CTRL_DGRAM_SET_PEER, 0, (char *)peer) int BIO_set_ex_data(BIO *bio,int idx,void *data); void *BIO_get_ex_data(BIO *bio,int idx); int BIO_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); unsigned long BIO_number_read(BIO *bio); unsigned long BIO_number_written(BIO *bio); int BIO_asn1_set_prefix(BIO *b, asn1_ps_func *prefix, asn1_ps_func *prefix_free); int BIO_asn1_get_prefix(BIO *b, asn1_ps_func **pprefix, asn1_ps_func **pprefix_free); int BIO_asn1_set_suffix(BIO *b, asn1_ps_func *suffix, asn1_ps_func *suffix_free); int BIO_asn1_get_suffix(BIO *b, asn1_ps_func **psuffix, asn1_ps_func **psuffix_free); BIO_METHOD *BIO_s_file(void ); BIO *BIO_new_file(const char *filename, const char *mode); BIO *BIO_new_fp(FILE *stream, int close_flag); #define BIO_s_file_internal BIO_s_file BIO * BIO_new(BIO_METHOD *type); int BIO_set(BIO *a,BIO_METHOD *type); int BIO_free(BIO *a); void BIO_vfree(BIO *a); int BIO_read(BIO *b, void *data, int len); int BIO_gets(BIO *bp,char *buf, int size); int BIO_write(BIO *b, const void *data, int len); int BIO_puts(BIO *bp,const char *buf); int BIO_indent(BIO *b,int indent,int max); long BIO_ctrl(BIO *bp,int cmd,long larg,void *parg); long BIO_callback_ctrl(BIO *b, int cmd, void (*fp)(struct bio_st *, int, const char *, int, long, long)); char * BIO_ptr_ctrl(BIO *bp,int cmd,long larg); long BIO_int_ctrl(BIO *bp,int cmd,long larg,int iarg); BIO * BIO_push(BIO *b,BIO *append); BIO * BIO_pop(BIO *b); void BIO_free_all(BIO *a); BIO * BIO_find_type(BIO *b,int bio_type); BIO * BIO_next(BIO *b); BIO * BIO_get_retry_BIO(BIO *bio, int *reason); int BIO_get_retry_reason(BIO *bio); BIO * BIO_dup_chain(BIO *in); int BIO_nread0(BIO *bio, char **buf); int BIO_nread(BIO *bio, char **buf, int num); int BIO_nwrite0(BIO *bio, char **buf); int BIO_nwrite(BIO *bio, char **buf, int num); long BIO_debug_callback(BIO *bio,int cmd,const char *argp,int argi, long argl,long ret); BIO_METHOD *BIO_s_mem(void); BIO *BIO_new_mem_buf(void *buf, int len); BIO_METHOD *BIO_s_socket(void); BIO_METHOD *BIO_s_connect(void); BIO_METHOD *BIO_s_accept(void); BIO_METHOD *BIO_s_fd(void); BIO_METHOD *BIO_s_log(void); BIO_METHOD *BIO_s_bio(void); BIO_METHOD *BIO_s_null(void); BIO_METHOD *BIO_f_null(void); BIO_METHOD *BIO_f_buffer(void); BIO_METHOD *BIO_f_nbio_test(void); BIO_METHOD *BIO_s_datagram(void); int BIO_sock_should_retry(int i); int BIO_sock_non_fatal_error(int error); int BIO_dgram_non_fatal_error(int error); int BIO_fd_should_retry(int i); int BIO_fd_non_fatal_error(int error); int BIO_dump_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len); int BIO_dump_indent_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len, int indent); int BIO_dump(BIO *b,const char *bytes,int len); int BIO_dump_indent(BIO *b,const char *bytes,int len,int indent); int BIO_dump_fp(FILE *fp, const char *s, int len); int BIO_dump_indent_fp(FILE *fp, const char *s, int len, int indent); struct hostent *BIO_gethostbyname(const char *name); # 718 "/usr/include/openssl/bio.h" 3 4 int BIO_sock_error(int sock); int BIO_socket_ioctl(int fd, long type, void *arg); int BIO_socket_nbio(int fd,int mode); int BIO_get_port(const char *str, unsigned short *port_ptr); int BIO_get_host_ip(const char *str, unsigned char *ip); int BIO_get_accept_socket(char *host_port,int mode); int BIO_accept(int sock,char **ip_port); int BIO_sock_init(void ); void BIO_sock_cleanup(void); int BIO_set_tcp_ndelay(int sock,int turn_on); BIO *BIO_new_socket(int sock, int close_flag); BIO *BIO_new_dgram(int fd, int close_flag); # 740 "/usr/include/openssl/bio.h" 3 4 BIO *BIO_new_fd(int fd, int close_flag); BIO *BIO_new_connect(char *host_port); BIO *BIO_new_accept(char *host_port); int BIO_new_bio_pair(BIO **bio1, size_t writebuf1, BIO **bio2, size_t writebuf2); void BIO_copy_next_retry(BIO *b); #define __bio_h__attr__ __attribute__ int BIO_printf(BIO *bio, const char *format, ...) __attribute__((__format__(__printf__,2,3))); int BIO_vprintf(BIO *bio, const char *format, va_list args) __attribute__((__format__(__printf__,2,0))); int BIO_snprintf(char *buf, size_t n, const char *format, ...) __attribute__((__format__(__printf__,3,4))); int BIO_vsnprintf(char *buf, size_t n, const char *format, va_list args) __attribute__((__format__(__printf__,3,0))); #undef __bio_h__attr__ void ERR_load_BIO_strings(void); #define BIO_F_ACPT_STATE 100 #define BIO_F_BIO_ACCEPT 101 #define BIO_F_BIO_BER_GET_HEADER 102 #define BIO_F_BIO_CALLBACK_CTRL 131 #define BIO_F_BIO_CTRL 103 #define BIO_F_BIO_GETHOSTBYNAME 120 #define BIO_F_BIO_GETS 104 #define BIO_F_BIO_GET_ACCEPT_SOCKET 105 #define BIO_F_BIO_GET_HOST_IP 106 #define BIO_F_BIO_GET_PORT 107 #define BIO_F_BIO_MAKE_PAIR 121 #define BIO_F_BIO_NEW 108 #define BIO_F_BIO_NEW_FILE 109 #define BIO_F_BIO_NEW_MEM_BUF 126 #define BIO_F_BIO_NREAD 123 #define BIO_F_BIO_NREAD0 124 #define BIO_F_BIO_NWRITE 125 #define BIO_F_BIO_NWRITE0 122 #define BIO_F_BIO_PUTS 110 #define BIO_F_BIO_READ 111 #define BIO_F_BIO_SOCK_INIT 112 #define BIO_F_BIO_WRITE 113 #define BIO_F_BUFFER_CTRL 114 #define BIO_F_CONN_CTRL 127 #define BIO_F_CONN_STATE 115 #define BIO_F_DGRAM_SCTP_READ 132 #define BIO_F_FILE_CTRL 116 #define BIO_F_FILE_READ 130 #define BIO_F_LINEBUFFER_CTRL 129 #define BIO_F_MEM_READ 128 #define BIO_F_MEM_WRITE 117 #define BIO_F_SSL_NEW 118 #define BIO_F_WSASTARTUP 119 #define BIO_R_ACCEPT_ERROR 100 #define BIO_R_BAD_FOPEN_MODE 101 #define BIO_R_BAD_HOSTNAME_LOOKUP 102 #define BIO_R_BROKEN_PIPE 124 #define BIO_R_CONNECT_ERROR 103 #define BIO_R_EOF_ON_MEMORY_BIO 127 #define BIO_R_ERROR_SETTING_NBIO 104 #define BIO_R_ERROR_SETTING_NBIO_ON_ACCEPTED_SOCKET 105 #define BIO_R_ERROR_SETTING_NBIO_ON_ACCEPT_SOCKET 106 #define BIO_R_GETHOSTBYNAME_ADDR_IS_NOT_AF_INET 107 #define BIO_R_INVALID_ARGUMENT 125 #define BIO_R_INVALID_IP_ADDRESS 108 #define BIO_R_IN_USE 123 #define BIO_R_KEEPALIVE 109 #define BIO_R_NBIO_CONNECT_ERROR 110 #define BIO_R_NO_ACCEPT_PORT_SPECIFIED 111 #define BIO_R_NO_HOSTNAME_SPECIFIED 112 #define BIO_R_NO_PORT_DEFINED 113 #define BIO_R_NO_PORT_SPECIFIED 114 #define BIO_R_NO_SUCH_FILE 128 #define BIO_R_NULL_PARAMETER 115 #define BIO_R_TAG_MISMATCH 116 #define BIO_R_UNABLE_TO_BIND_SOCKET 117 #define BIO_R_UNABLE_TO_CREATE_SOCKET 118 #define BIO_R_UNABLE_TO_LISTEN_SOCKET 119 #define BIO_R_UNINITIALIZED 120 #define BIO_R_UNSUPPORTED_METHOD 121 #define BIO_R_WRITE_TO_READ_ONLY_BIO 126 #define BIO_R_WSASTARTUP 122 # 153 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/x509.h" 1 3 4 # 65 "/usr/include/openssl/x509.h" 3 4 #define HEADER_X509_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 68 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/buffer.h" 1 3 4 # 60 "/usr/include/openssl/buffer.h" 3 4 #define HEADER_BUFFER_H # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define _STDDEF_H #define _STDDEF_H_ #define _ANSI_STDDEF_H #define __STDDEF_H__ # 139 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define _PTRDIFF_T #define _T_PTRDIFF_ #define _T_PTRDIFF #define __PTRDIFF_T #define _PTRDIFF_T_ #define _BSD_PTRDIFF_T_ #define ___int_ptrdiff_t_h #define _GCC_PTRDIFF_T typedef long int ptrdiff_t; # 161 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_ptrdiff_t # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 343 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL #define offsetof(TYPE,MEMBER) __builtin_offsetof (TYPE, MEMBER) # 69 "/usr/include/openssl/buffer.h" 2 3 4 # 77 "/usr/include/openssl/buffer.h" 3 4 struct buf_mem_st { size_t length; char *data; size_t max; }; BUF_MEM *BUF_MEM_new(void); void BUF_MEM_free(BUF_MEM *a); int BUF_MEM_grow(BUF_MEM *str, size_t len); int BUF_MEM_grow_clean(BUF_MEM *str, size_t len); char * BUF_strdup(const char *str); char * BUF_strndup(const char *str, size_t siz); void * BUF_memdup(const void *data, size_t siz); void BUF_reverse(unsigned char *out, unsigned char *in, size_t siz); size_t BUF_strlcpy(char *dst,const char *src,size_t siz); size_t BUF_strlcat(char *dst,const char *src,size_t siz); void ERR_load_BUF_strings(void); #define BUF_F_BUF_MEMDUP 103 #define BUF_F_BUF_MEM_GROW 100 #define BUF_F_BUF_MEM_GROW_CLEAN 105 #define BUF_F_BUF_MEM_NEW 101 #define BUF_F_BUF_STRDUP 102 #define BUF_F_BUF_STRNDUP 104 # 71 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/evp.h" 1 3 4 # 60 "/usr/include/openssl/evp.h" 3 4 #define HEADER_ENVELOPE_H #define OPENSSL_ALGORITHM_DEFINES # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/opensslconf.h" 3 4 #define NO_GMP #define NO_IDEA #define NO_JPAKE #define NO_KRB5 #define NO_MD2 #define NO_MDC2 #define NO_RC5 #define NO_RFC3779 #define NO_SCTP #define NO_SSL2 #define NO_STORE #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 67 "/usr/include/openssl/evp.h" 2 3 4 #undef OPENSSL_ALGORITHM_DEFINES # 85 "/usr/include/openssl/evp.h" 3 4 #define EVP_MAX_MD_SIZE 64 #define EVP_MAX_KEY_LENGTH 64 #define EVP_MAX_IV_LENGTH 16 #define EVP_MAX_BLOCK_LENGTH 32 #define PKCS5_SALT_LEN 8 #define PKCS5_DEFAULT_ITER 2048 # 1 "/usr/include/openssl/objects.h" 1 3 4 # 60 "/usr/include/openssl/objects.h" 3 4 #define HEADER_OBJECTS_H #define USE_OBJ_MAC # 1 "/usr/include/openssl/obj_mac.h" 1 3 4 # 65 "/usr/include/openssl/obj_mac.h" 3 4 #define SN_undef "UNDEF" #define LN_undef "undefined" #define NID_undef 0 #define OBJ_undef 0L #define SN_itu_t "ITU-T" #define LN_itu_t "itu-t" #define NID_itu_t 645 #define OBJ_itu_t 0L #define NID_ccitt 404 #define OBJ_ccitt OBJ_itu_t #define SN_iso "ISO" #define LN_iso "iso" #define NID_iso 181 #define OBJ_iso 1L #define SN_joint_iso_itu_t "JOINT-ISO-ITU-T" #define LN_joint_iso_itu_t "joint-iso-itu-t" #define NID_joint_iso_itu_t 646 #define OBJ_joint_iso_itu_t 2L #define NID_joint_iso_ccitt 393 #define OBJ_joint_iso_ccitt OBJ_joint_iso_itu_t #define SN_member_body "member-body" #define LN_member_body "ISO Member Body" #define NID_member_body 182 #define OBJ_member_body OBJ_iso,2L #define SN_identified_organization "identified-organization" #define NID_identified_organization 676 #define OBJ_identified_organization OBJ_iso,3L #define SN_hmac_md5 "HMAC-MD5" #define LN_hmac_md5 "hmac-md5" #define NID_hmac_md5 780 #define OBJ_hmac_md5 OBJ_identified_organization,6L,1L,5L,5L,8L,1L,1L #define SN_hmac_sha1 "HMAC-SHA1" #define LN_hmac_sha1 "hmac-sha1" #define NID_hmac_sha1 781 #define OBJ_hmac_sha1 OBJ_identified_organization,6L,1L,5L,5L,8L,1L,2L #define SN_certicom_arc "certicom-arc" #define NID_certicom_arc 677 #define OBJ_certicom_arc OBJ_identified_organization,132L #define SN_international_organizations "international-organizations" #define LN_international_organizations "International Organizations" #define NID_international_organizations 647 #define OBJ_international_organizations OBJ_joint_iso_itu_t,23L #define SN_wap "wap" #define NID_wap 678 #define OBJ_wap OBJ_international_organizations,43L #define SN_wap_wsg "wap-wsg" #define NID_wap_wsg 679 #define OBJ_wap_wsg OBJ_wap,1L #define SN_selected_attribute_types "selected-attribute-types" #define LN_selected_attribute_types "Selected Attribute Types" #define NID_selected_attribute_types 394 #define OBJ_selected_attribute_types OBJ_joint_iso_itu_t,5L,1L,5L #define SN_clearance "clearance" #define NID_clearance 395 #define OBJ_clearance OBJ_selected_attribute_types,55L #define SN_ISO_US "ISO-US" #define LN_ISO_US "ISO US Member Body" #define NID_ISO_US 183 #define OBJ_ISO_US OBJ_member_body,840L #define SN_X9_57 "X9-57" #define LN_X9_57 "X9.57" #define NID_X9_57 184 #define OBJ_X9_57 OBJ_ISO_US,10040L #define SN_X9cm "X9cm" #define LN_X9cm "X9.57 CM ?" #define NID_X9cm 185 #define OBJ_X9cm OBJ_X9_57,4L #define SN_dsa "DSA" #define LN_dsa "dsaEncryption" #define NID_dsa 116 #define OBJ_dsa OBJ_X9cm,1L #define SN_dsaWithSHA1 "DSA-SHA1" #define LN_dsaWithSHA1 "dsaWithSHA1" #define NID_dsaWithSHA1 113 #define OBJ_dsaWithSHA1 OBJ_X9cm,3L #define SN_ansi_X9_62 "ansi-X9-62" #define LN_ansi_X9_62 "ANSI X9.62" #define NID_ansi_X9_62 405 #define OBJ_ansi_X9_62 OBJ_ISO_US,10045L #define OBJ_X9_62_id_fieldType OBJ_ansi_X9_62,1L #define SN_X9_62_prime_field "prime-field" #define NID_X9_62_prime_field 406 #define OBJ_X9_62_prime_field OBJ_X9_62_id_fieldType,1L #define SN_X9_62_characteristic_two_field "characteristic-two-field" #define NID_X9_62_characteristic_two_field 407 #define OBJ_X9_62_characteristic_two_field OBJ_X9_62_id_fieldType,2L #define SN_X9_62_id_characteristic_two_basis "id-characteristic-two-basis" #define NID_X9_62_id_characteristic_two_basis 680 #define OBJ_X9_62_id_characteristic_two_basis OBJ_X9_62_characteristic_two_field,3L #define SN_X9_62_onBasis "onBasis" #define NID_X9_62_onBasis 681 #define OBJ_X9_62_onBasis OBJ_X9_62_id_characteristic_two_basis,1L #define SN_X9_62_tpBasis "tpBasis" #define NID_X9_62_tpBasis 682 #define OBJ_X9_62_tpBasis OBJ_X9_62_id_characteristic_two_basis,2L #define SN_X9_62_ppBasis "ppBasis" #define NID_X9_62_ppBasis 683 #define OBJ_X9_62_ppBasis OBJ_X9_62_id_characteristic_two_basis,3L #define OBJ_X9_62_id_publicKeyType OBJ_ansi_X9_62,2L #define SN_X9_62_id_ecPublicKey "id-ecPublicKey" #define NID_X9_62_id_ecPublicKey 408 #define OBJ_X9_62_id_ecPublicKey OBJ_X9_62_id_publicKeyType,1L #define OBJ_X9_62_ellipticCurve OBJ_ansi_X9_62,3L #define OBJ_X9_62_c_TwoCurve OBJ_X9_62_ellipticCurve,0L #define SN_X9_62_c2pnb163v1 "c2pnb163v1" #define NID_X9_62_c2pnb163v1 684 #define OBJ_X9_62_c2pnb163v1 OBJ_X9_62_c_TwoCurve,1L #define SN_X9_62_c2pnb163v2 "c2pnb163v2" #define NID_X9_62_c2pnb163v2 685 #define OBJ_X9_62_c2pnb163v2 OBJ_X9_62_c_TwoCurve,2L #define SN_X9_62_c2pnb163v3 "c2pnb163v3" #define NID_X9_62_c2pnb163v3 686 #define OBJ_X9_62_c2pnb163v3 OBJ_X9_62_c_TwoCurve,3L #define SN_X9_62_c2pnb176v1 "c2pnb176v1" #define NID_X9_62_c2pnb176v1 687 #define OBJ_X9_62_c2pnb176v1 OBJ_X9_62_c_TwoCurve,4L #define SN_X9_62_c2tnb191v1 "c2tnb191v1" #define NID_X9_62_c2tnb191v1 688 #define OBJ_X9_62_c2tnb191v1 OBJ_X9_62_c_TwoCurve,5L #define SN_X9_62_c2tnb191v2 "c2tnb191v2" #define NID_X9_62_c2tnb191v2 689 #define OBJ_X9_62_c2tnb191v2 OBJ_X9_62_c_TwoCurve,6L #define SN_X9_62_c2tnb191v3 "c2tnb191v3" #define NID_X9_62_c2tnb191v3 690 #define OBJ_X9_62_c2tnb191v3 OBJ_X9_62_c_TwoCurve,7L #define SN_X9_62_c2onb191v4 "c2onb191v4" #define NID_X9_62_c2onb191v4 691 #define OBJ_X9_62_c2onb191v4 OBJ_X9_62_c_TwoCurve,8L #define SN_X9_62_c2onb191v5 "c2onb191v5" #define NID_X9_62_c2onb191v5 692 #define OBJ_X9_62_c2onb191v5 OBJ_X9_62_c_TwoCurve,9L #define SN_X9_62_c2pnb208w1 "c2pnb208w1" #define NID_X9_62_c2pnb208w1 693 #define OBJ_X9_62_c2pnb208w1 OBJ_X9_62_c_TwoCurve,10L #define SN_X9_62_c2tnb239v1 "c2tnb239v1" #define NID_X9_62_c2tnb239v1 694 #define OBJ_X9_62_c2tnb239v1 OBJ_X9_62_c_TwoCurve,11L #define SN_X9_62_c2tnb239v2 "c2tnb239v2" #define NID_X9_62_c2tnb239v2 695 #define OBJ_X9_62_c2tnb239v2 OBJ_X9_62_c_TwoCurve,12L #define SN_X9_62_c2tnb239v3 "c2tnb239v3" #define NID_X9_62_c2tnb239v3 696 #define OBJ_X9_62_c2tnb239v3 OBJ_X9_62_c_TwoCurve,13L #define SN_X9_62_c2onb239v4 "c2onb239v4" #define NID_X9_62_c2onb239v4 697 #define OBJ_X9_62_c2onb239v4 OBJ_X9_62_c_TwoCurve,14L #define SN_X9_62_c2onb239v5 "c2onb239v5" #define NID_X9_62_c2onb239v5 698 #define OBJ_X9_62_c2onb239v5 OBJ_X9_62_c_TwoCurve,15L #define SN_X9_62_c2pnb272w1 "c2pnb272w1" #define NID_X9_62_c2pnb272w1 699 #define OBJ_X9_62_c2pnb272w1 OBJ_X9_62_c_TwoCurve,16L #define SN_X9_62_c2pnb304w1 "c2pnb304w1" #define NID_X9_62_c2pnb304w1 700 #define OBJ_X9_62_c2pnb304w1 OBJ_X9_62_c_TwoCurve,17L #define SN_X9_62_c2tnb359v1 "c2tnb359v1" #define NID_X9_62_c2tnb359v1 701 #define OBJ_X9_62_c2tnb359v1 OBJ_X9_62_c_TwoCurve,18L #define SN_X9_62_c2pnb368w1 "c2pnb368w1" #define NID_X9_62_c2pnb368w1 702 #define OBJ_X9_62_c2pnb368w1 OBJ_X9_62_c_TwoCurve,19L #define SN_X9_62_c2tnb431r1 "c2tnb431r1" #define NID_X9_62_c2tnb431r1 703 #define OBJ_X9_62_c2tnb431r1 OBJ_X9_62_c_TwoCurve,20L #define OBJ_X9_62_primeCurve OBJ_X9_62_ellipticCurve,1L #define SN_X9_62_prime192v1 "prime192v1" #define NID_X9_62_prime192v1 409 #define OBJ_X9_62_prime192v1 OBJ_X9_62_primeCurve,1L #define SN_X9_62_prime192v2 "prime192v2" #define NID_X9_62_prime192v2 410 #define OBJ_X9_62_prime192v2 OBJ_X9_62_primeCurve,2L #define SN_X9_62_prime192v3 "prime192v3" #define NID_X9_62_prime192v3 411 #define OBJ_X9_62_prime192v3 OBJ_X9_62_primeCurve,3L #define SN_X9_62_prime239v1 "prime239v1" #define NID_X9_62_prime239v1 412 #define OBJ_X9_62_prime239v1 OBJ_X9_62_primeCurve,4L #define SN_X9_62_prime239v2 "prime239v2" #define NID_X9_62_prime239v2 413 #define OBJ_X9_62_prime239v2 OBJ_X9_62_primeCurve,5L #define SN_X9_62_prime239v3 "prime239v3" #define NID_X9_62_prime239v3 414 #define OBJ_X9_62_prime239v3 OBJ_X9_62_primeCurve,6L #define SN_X9_62_prime256v1 "prime256v1" #define NID_X9_62_prime256v1 415 #define OBJ_X9_62_prime256v1 OBJ_X9_62_primeCurve,7L #define OBJ_X9_62_id_ecSigType OBJ_ansi_X9_62,4L #define SN_ecdsa_with_SHA1 "ecdsa-with-SHA1" #define NID_ecdsa_with_SHA1 416 #define OBJ_ecdsa_with_SHA1 OBJ_X9_62_id_ecSigType,1L #define SN_ecdsa_with_Recommended "ecdsa-with-Recommended" #define NID_ecdsa_with_Recommended 791 #define OBJ_ecdsa_with_Recommended OBJ_X9_62_id_ecSigType,2L #define SN_ecdsa_with_Specified "ecdsa-with-Specified" #define NID_ecdsa_with_Specified 792 #define OBJ_ecdsa_with_Specified OBJ_X9_62_id_ecSigType,3L #define SN_ecdsa_with_SHA224 "ecdsa-with-SHA224" #define NID_ecdsa_with_SHA224 793 #define OBJ_ecdsa_with_SHA224 OBJ_ecdsa_with_Specified,1L #define SN_ecdsa_with_SHA256 "ecdsa-with-SHA256" #define NID_ecdsa_with_SHA256 794 #define OBJ_ecdsa_with_SHA256 OBJ_ecdsa_with_Specified,2L #define SN_ecdsa_with_SHA384 "ecdsa-with-SHA384" #define NID_ecdsa_with_SHA384 795 #define OBJ_ecdsa_with_SHA384 OBJ_ecdsa_with_Specified,3L #define SN_ecdsa_with_SHA512 "ecdsa-with-SHA512" #define NID_ecdsa_with_SHA512 796 #define OBJ_ecdsa_with_SHA512 OBJ_ecdsa_with_Specified,4L #define OBJ_secg_ellipticCurve OBJ_certicom_arc,0L #define SN_secp112r1 "secp112r1" #define NID_secp112r1 704 #define OBJ_secp112r1 OBJ_secg_ellipticCurve,6L #define SN_secp112r2 "secp112r2" #define NID_secp112r2 705 #define OBJ_secp112r2 OBJ_secg_ellipticCurve,7L #define SN_secp128r1 "secp128r1" #define NID_secp128r1 706 #define OBJ_secp128r1 OBJ_secg_ellipticCurve,28L #define SN_secp128r2 "secp128r2" #define NID_secp128r2 707 #define OBJ_secp128r2 OBJ_secg_ellipticCurve,29L #define SN_secp160k1 "secp160k1" #define NID_secp160k1 708 #define OBJ_secp160k1 OBJ_secg_ellipticCurve,9L #define SN_secp160r1 "secp160r1" #define NID_secp160r1 709 #define OBJ_secp160r1 OBJ_secg_ellipticCurve,8L #define SN_secp160r2 "secp160r2" #define NID_secp160r2 710 #define OBJ_secp160r2 OBJ_secg_ellipticCurve,30L #define SN_secp192k1 "secp192k1" #define NID_secp192k1 711 #define OBJ_secp192k1 OBJ_secg_ellipticCurve,31L #define SN_secp224k1 "secp224k1" #define NID_secp224k1 712 #define OBJ_secp224k1 OBJ_secg_ellipticCurve,32L #define SN_secp224r1 "secp224r1" #define NID_secp224r1 713 #define OBJ_secp224r1 OBJ_secg_ellipticCurve,33L #define SN_secp256k1 "secp256k1" #define NID_secp256k1 714 #define OBJ_secp256k1 OBJ_secg_ellipticCurve,10L #define SN_secp384r1 "secp384r1" #define NID_secp384r1 715 #define OBJ_secp384r1 OBJ_secg_ellipticCurve,34L #define SN_secp521r1 "secp521r1" #define NID_secp521r1 716 #define OBJ_secp521r1 OBJ_secg_ellipticCurve,35L #define SN_sect113r1 "sect113r1" #define NID_sect113r1 717 #define OBJ_sect113r1 OBJ_secg_ellipticCurve,4L #define SN_sect113r2 "sect113r2" #define NID_sect113r2 718 #define OBJ_sect113r2 OBJ_secg_ellipticCurve,5L #define SN_sect131r1 "sect131r1" #define NID_sect131r1 719 #define OBJ_sect131r1 OBJ_secg_ellipticCurve,22L #define SN_sect131r2 "sect131r2" #define NID_sect131r2 720 #define OBJ_sect131r2 OBJ_secg_ellipticCurve,23L #define SN_sect163k1 "sect163k1" #define NID_sect163k1 721 #define OBJ_sect163k1 OBJ_secg_ellipticCurve,1L #define SN_sect163r1 "sect163r1" #define NID_sect163r1 722 #define OBJ_sect163r1 OBJ_secg_ellipticCurve,2L #define SN_sect163r2 "sect163r2" #define NID_sect163r2 723 #define OBJ_sect163r2 OBJ_secg_ellipticCurve,15L #define SN_sect193r1 "sect193r1" #define NID_sect193r1 724 #define OBJ_sect193r1 OBJ_secg_ellipticCurve,24L #define SN_sect193r2 "sect193r2" #define NID_sect193r2 725 #define OBJ_sect193r2 OBJ_secg_ellipticCurve,25L #define SN_sect233k1 "sect233k1" #define NID_sect233k1 726 #define OBJ_sect233k1 OBJ_secg_ellipticCurve,26L #define SN_sect233r1 "sect233r1" #define NID_sect233r1 727 #define OBJ_sect233r1 OBJ_secg_ellipticCurve,27L #define SN_sect239k1 "sect239k1" #define NID_sect239k1 728 #define OBJ_sect239k1 OBJ_secg_ellipticCurve,3L #define SN_sect283k1 "sect283k1" #define NID_sect283k1 729 #define OBJ_sect283k1 OBJ_secg_ellipticCurve,16L #define SN_sect283r1 "sect283r1" #define NID_sect283r1 730 #define OBJ_sect283r1 OBJ_secg_ellipticCurve,17L #define SN_sect409k1 "sect409k1" #define NID_sect409k1 731 #define OBJ_sect409k1 OBJ_secg_ellipticCurve,36L #define SN_sect409r1 "sect409r1" #define NID_sect409r1 732 #define OBJ_sect409r1 OBJ_secg_ellipticCurve,37L #define SN_sect571k1 "sect571k1" #define NID_sect571k1 733 #define OBJ_sect571k1 OBJ_secg_ellipticCurve,38L #define SN_sect571r1 "sect571r1" #define NID_sect571r1 734 #define OBJ_sect571r1 OBJ_secg_ellipticCurve,39L #define OBJ_wap_wsg_idm_ecid OBJ_wap_wsg,4L #define SN_wap_wsg_idm_ecid_wtls1 "wap-wsg-idm-ecid-wtls1" #define NID_wap_wsg_idm_ecid_wtls1 735 #define OBJ_wap_wsg_idm_ecid_wtls1 OBJ_wap_wsg_idm_ecid,1L #define SN_wap_wsg_idm_ecid_wtls3 "wap-wsg-idm-ecid-wtls3" #define NID_wap_wsg_idm_ecid_wtls3 736 #define OBJ_wap_wsg_idm_ecid_wtls3 OBJ_wap_wsg_idm_ecid,3L #define SN_wap_wsg_idm_ecid_wtls4 "wap-wsg-idm-ecid-wtls4" #define NID_wap_wsg_idm_ecid_wtls4 737 #define OBJ_wap_wsg_idm_ecid_wtls4 OBJ_wap_wsg_idm_ecid,4L #define SN_wap_wsg_idm_ecid_wtls5 "wap-wsg-idm-ecid-wtls5" #define NID_wap_wsg_idm_ecid_wtls5 738 #define OBJ_wap_wsg_idm_ecid_wtls5 OBJ_wap_wsg_idm_ecid,5L #define SN_wap_wsg_idm_ecid_wtls6 "wap-wsg-idm-ecid-wtls6" #define NID_wap_wsg_idm_ecid_wtls6 739 #define OBJ_wap_wsg_idm_ecid_wtls6 OBJ_wap_wsg_idm_ecid,6L #define SN_wap_wsg_idm_ecid_wtls7 "wap-wsg-idm-ecid-wtls7" #define NID_wap_wsg_idm_ecid_wtls7 740 #define OBJ_wap_wsg_idm_ecid_wtls7 OBJ_wap_wsg_idm_ecid,7L #define SN_wap_wsg_idm_ecid_wtls8 "wap-wsg-idm-ecid-wtls8" #define NID_wap_wsg_idm_ecid_wtls8 741 #define OBJ_wap_wsg_idm_ecid_wtls8 OBJ_wap_wsg_idm_ecid,8L #define SN_wap_wsg_idm_ecid_wtls9 "wap-wsg-idm-ecid-wtls9" #define NID_wap_wsg_idm_ecid_wtls9 742 #define OBJ_wap_wsg_idm_ecid_wtls9 OBJ_wap_wsg_idm_ecid,9L #define SN_wap_wsg_idm_ecid_wtls10 "wap-wsg-idm-ecid-wtls10" #define NID_wap_wsg_idm_ecid_wtls10 743 #define OBJ_wap_wsg_idm_ecid_wtls10 OBJ_wap_wsg_idm_ecid,10L #define SN_wap_wsg_idm_ecid_wtls11 "wap-wsg-idm-ecid-wtls11" #define NID_wap_wsg_idm_ecid_wtls11 744 #define OBJ_wap_wsg_idm_ecid_wtls11 OBJ_wap_wsg_idm_ecid,11L #define SN_wap_wsg_idm_ecid_wtls12 "wap-wsg-idm-ecid-wtls12" #define NID_wap_wsg_idm_ecid_wtls12 745 #define OBJ_wap_wsg_idm_ecid_wtls12 OBJ_wap_wsg_idm_ecid,12L #define SN_cast5_cbc "CAST5-CBC" #define LN_cast5_cbc "cast5-cbc" #define NID_cast5_cbc 108 #define OBJ_cast5_cbc OBJ_ISO_US,113533L,7L,66L,10L #define SN_cast5_ecb "CAST5-ECB" #define LN_cast5_ecb "cast5-ecb" #define NID_cast5_ecb 109 #define SN_cast5_cfb64 "CAST5-CFB" #define LN_cast5_cfb64 "cast5-cfb" #define NID_cast5_cfb64 110 #define SN_cast5_ofb64 "CAST5-OFB" #define LN_cast5_ofb64 "cast5-ofb" #define NID_cast5_ofb64 111 #define LN_pbeWithMD5AndCast5_CBC "pbeWithMD5AndCast5CBC" #define NID_pbeWithMD5AndCast5_CBC 112 #define OBJ_pbeWithMD5AndCast5_CBC OBJ_ISO_US,113533L,7L,66L,12L #define SN_id_PasswordBasedMAC "id-PasswordBasedMAC" #define LN_id_PasswordBasedMAC "password based MAC" #define NID_id_PasswordBasedMAC 782 #define OBJ_id_PasswordBasedMAC OBJ_ISO_US,113533L,7L,66L,13L #define SN_id_DHBasedMac "id-DHBasedMac" #define LN_id_DHBasedMac "Diffie-Hellman based MAC" #define NID_id_DHBasedMac 783 #define OBJ_id_DHBasedMac OBJ_ISO_US,113533L,7L,66L,30L #define SN_rsadsi "rsadsi" #define LN_rsadsi "RSA Data Security, Inc." #define NID_rsadsi 1 #define OBJ_rsadsi OBJ_ISO_US,113549L #define SN_pkcs "pkcs" #define LN_pkcs "RSA Data Security, Inc. PKCS" #define NID_pkcs 2 #define OBJ_pkcs OBJ_rsadsi,1L #define SN_pkcs1 "pkcs1" #define NID_pkcs1 186 #define OBJ_pkcs1 OBJ_pkcs,1L #define LN_rsaEncryption "rsaEncryption" #define NID_rsaEncryption 6 #define OBJ_rsaEncryption OBJ_pkcs1,1L #define SN_md2WithRSAEncryption "RSA-MD2" #define LN_md2WithRSAEncryption "md2WithRSAEncryption" #define NID_md2WithRSAEncryption 7 #define OBJ_md2WithRSAEncryption OBJ_pkcs1,2L #define SN_md4WithRSAEncryption "RSA-MD4" #define LN_md4WithRSAEncryption "md4WithRSAEncryption" #define NID_md4WithRSAEncryption 396 #define OBJ_md4WithRSAEncryption OBJ_pkcs1,3L #define SN_md5WithRSAEncryption "RSA-MD5" #define LN_md5WithRSAEncryption "md5WithRSAEncryption" #define NID_md5WithRSAEncryption 8 #define OBJ_md5WithRSAEncryption OBJ_pkcs1,4L #define SN_sha1WithRSAEncryption "RSA-SHA1" #define LN_sha1WithRSAEncryption "sha1WithRSAEncryption" #define NID_sha1WithRSAEncryption 65 #define OBJ_sha1WithRSAEncryption OBJ_pkcs1,5L #define SN_rsaesOaep "RSAES-OAEP" #define LN_rsaesOaep "rsaesOaep" #define NID_rsaesOaep 919 #define OBJ_rsaesOaep OBJ_pkcs1,7L #define SN_mgf1 "MGF1" #define LN_mgf1 "mgf1" #define NID_mgf1 911 #define OBJ_mgf1 OBJ_pkcs1,8L #define SN_rsassaPss "RSASSA-PSS" #define LN_rsassaPss "rsassaPss" #define NID_rsassaPss 912 #define OBJ_rsassaPss OBJ_pkcs1,10L #define SN_sha256WithRSAEncryption "RSA-SHA256" #define LN_sha256WithRSAEncryption "sha256WithRSAEncryption" #define NID_sha256WithRSAEncryption 668 #define OBJ_sha256WithRSAEncryption OBJ_pkcs1,11L #define SN_sha384WithRSAEncryption "RSA-SHA384" #define LN_sha384WithRSAEncryption "sha384WithRSAEncryption" #define NID_sha384WithRSAEncryption 669 #define OBJ_sha384WithRSAEncryption OBJ_pkcs1,12L #define SN_sha512WithRSAEncryption "RSA-SHA512" #define LN_sha512WithRSAEncryption "sha512WithRSAEncryption" #define NID_sha512WithRSAEncryption 670 #define OBJ_sha512WithRSAEncryption OBJ_pkcs1,13L #define SN_sha224WithRSAEncryption "RSA-SHA224" #define LN_sha224WithRSAEncryption "sha224WithRSAEncryption" #define NID_sha224WithRSAEncryption 671 #define OBJ_sha224WithRSAEncryption OBJ_pkcs1,14L #define SN_pkcs3 "pkcs3" #define NID_pkcs3 27 #define OBJ_pkcs3 OBJ_pkcs,3L #define LN_dhKeyAgreement "dhKeyAgreement" #define NID_dhKeyAgreement 28 #define OBJ_dhKeyAgreement OBJ_pkcs3,1L #define SN_pkcs5 "pkcs5" #define NID_pkcs5 187 #define OBJ_pkcs5 OBJ_pkcs,5L #define SN_pbeWithMD2AndDES_CBC "PBE-MD2-DES" #define LN_pbeWithMD2AndDES_CBC "pbeWithMD2AndDES-CBC" #define NID_pbeWithMD2AndDES_CBC 9 #define OBJ_pbeWithMD2AndDES_CBC OBJ_pkcs5,1L #define SN_pbeWithMD5AndDES_CBC "PBE-MD5-DES" #define LN_pbeWithMD5AndDES_CBC "pbeWithMD5AndDES-CBC" #define NID_pbeWithMD5AndDES_CBC 10 #define OBJ_pbeWithMD5AndDES_CBC OBJ_pkcs5,3L #define SN_pbeWithMD2AndRC2_CBC "PBE-MD2-RC2-64" #define LN_pbeWithMD2AndRC2_CBC "pbeWithMD2AndRC2-CBC" #define NID_pbeWithMD2AndRC2_CBC 168 #define OBJ_pbeWithMD2AndRC2_CBC OBJ_pkcs5,4L #define SN_pbeWithMD5AndRC2_CBC "PBE-MD5-RC2-64" #define LN_pbeWithMD5AndRC2_CBC "pbeWithMD5AndRC2-CBC" #define NID_pbeWithMD5AndRC2_CBC 169 #define OBJ_pbeWithMD5AndRC2_CBC OBJ_pkcs5,6L #define SN_pbeWithSHA1AndDES_CBC "PBE-SHA1-DES" #define LN_pbeWithSHA1AndDES_CBC "pbeWithSHA1AndDES-CBC" #define NID_pbeWithSHA1AndDES_CBC 170 #define OBJ_pbeWithSHA1AndDES_CBC OBJ_pkcs5,10L #define SN_pbeWithSHA1AndRC2_CBC "PBE-SHA1-RC2-64" #define LN_pbeWithSHA1AndRC2_CBC "pbeWithSHA1AndRC2-CBC" #define NID_pbeWithSHA1AndRC2_CBC 68 #define OBJ_pbeWithSHA1AndRC2_CBC OBJ_pkcs5,11L #define LN_id_pbkdf2 "PBKDF2" #define NID_id_pbkdf2 69 #define OBJ_id_pbkdf2 OBJ_pkcs5,12L #define LN_pbes2 "PBES2" #define NID_pbes2 161 #define OBJ_pbes2 OBJ_pkcs5,13L #define LN_pbmac1 "PBMAC1" #define NID_pbmac1 162 #define OBJ_pbmac1 OBJ_pkcs5,14L #define SN_pkcs7 "pkcs7" #define NID_pkcs7 20 #define OBJ_pkcs7 OBJ_pkcs,7L #define LN_pkcs7_data "pkcs7-data" #define NID_pkcs7_data 21 #define OBJ_pkcs7_data OBJ_pkcs7,1L #define LN_pkcs7_signed "pkcs7-signedData" #define NID_pkcs7_signed 22 #define OBJ_pkcs7_signed OBJ_pkcs7,2L #define LN_pkcs7_enveloped "pkcs7-envelopedData" #define NID_pkcs7_enveloped 23 #define OBJ_pkcs7_enveloped OBJ_pkcs7,3L #define LN_pkcs7_signedAndEnveloped "pkcs7-signedAndEnvelopedData" #define NID_pkcs7_signedAndEnveloped 24 #define OBJ_pkcs7_signedAndEnveloped OBJ_pkcs7,4L #define LN_pkcs7_digest "pkcs7-digestData" #define NID_pkcs7_digest 25 #define OBJ_pkcs7_digest OBJ_pkcs7,5L #define LN_pkcs7_encrypted "pkcs7-encryptedData" #define NID_pkcs7_encrypted 26 #define OBJ_pkcs7_encrypted OBJ_pkcs7,6L #define SN_pkcs9 "pkcs9" #define NID_pkcs9 47 #define OBJ_pkcs9 OBJ_pkcs,9L #define LN_pkcs9_emailAddress "emailAddress" #define NID_pkcs9_emailAddress 48 #define OBJ_pkcs9_emailAddress OBJ_pkcs9,1L #define LN_pkcs9_unstructuredName "unstructuredName" #define NID_pkcs9_unstructuredName 49 #define OBJ_pkcs9_unstructuredName OBJ_pkcs9,2L #define LN_pkcs9_contentType "contentType" #define NID_pkcs9_contentType 50 #define OBJ_pkcs9_contentType OBJ_pkcs9,3L #define LN_pkcs9_messageDigest "messageDigest" #define NID_pkcs9_messageDigest 51 #define OBJ_pkcs9_messageDigest OBJ_pkcs9,4L #define LN_pkcs9_signingTime "signingTime" #define NID_pkcs9_signingTime 52 #define OBJ_pkcs9_signingTime OBJ_pkcs9,5L #define LN_pkcs9_countersignature "countersignature" #define NID_pkcs9_countersignature 53 #define OBJ_pkcs9_countersignature OBJ_pkcs9,6L #define LN_pkcs9_challengePassword "challengePassword" #define NID_pkcs9_challengePassword 54 #define OBJ_pkcs9_challengePassword OBJ_pkcs9,7L #define LN_pkcs9_unstructuredAddress "unstructuredAddress" #define NID_pkcs9_unstructuredAddress 55 #define OBJ_pkcs9_unstructuredAddress OBJ_pkcs9,8L #define LN_pkcs9_extCertAttributes "extendedCertificateAttributes" #define NID_pkcs9_extCertAttributes 56 #define OBJ_pkcs9_extCertAttributes OBJ_pkcs9,9L #define SN_ext_req "extReq" #define LN_ext_req "Extension Request" #define NID_ext_req 172 #define OBJ_ext_req OBJ_pkcs9,14L #define SN_SMIMECapabilities "SMIME-CAPS" #define LN_SMIMECapabilities "S/MIME Capabilities" #define NID_SMIMECapabilities 167 #define OBJ_SMIMECapabilities OBJ_pkcs9,15L #define SN_SMIME "SMIME" #define LN_SMIME "S/MIME" #define NID_SMIME 188 #define OBJ_SMIME OBJ_pkcs9,16L #define SN_id_smime_mod "id-smime-mod" #define NID_id_smime_mod 189 #define OBJ_id_smime_mod OBJ_SMIME,0L #define SN_id_smime_ct "id-smime-ct" #define NID_id_smime_ct 190 #define OBJ_id_smime_ct OBJ_SMIME,1L #define SN_id_smime_aa "id-smime-aa" #define NID_id_smime_aa 191 #define OBJ_id_smime_aa OBJ_SMIME,2L #define SN_id_smime_alg "id-smime-alg" #define NID_id_smime_alg 192 #define OBJ_id_smime_alg OBJ_SMIME,3L #define SN_id_smime_cd "id-smime-cd" #define NID_id_smime_cd 193 #define OBJ_id_smime_cd OBJ_SMIME,4L #define SN_id_smime_spq "id-smime-spq" #define NID_id_smime_spq 194 #define OBJ_id_smime_spq OBJ_SMIME,5L #define SN_id_smime_cti "id-smime-cti" #define NID_id_smime_cti 195 #define OBJ_id_smime_cti OBJ_SMIME,6L #define SN_id_smime_mod_cms "id-smime-mod-cms" #define NID_id_smime_mod_cms 196 #define OBJ_id_smime_mod_cms OBJ_id_smime_mod,1L #define SN_id_smime_mod_ess "id-smime-mod-ess" #define NID_id_smime_mod_ess 197 #define OBJ_id_smime_mod_ess OBJ_id_smime_mod,2L #define SN_id_smime_mod_oid "id-smime-mod-oid" #define NID_id_smime_mod_oid 198 #define OBJ_id_smime_mod_oid OBJ_id_smime_mod,3L #define SN_id_smime_mod_msg_v3 "id-smime-mod-msg-v3" #define NID_id_smime_mod_msg_v3 199 #define OBJ_id_smime_mod_msg_v3 OBJ_id_smime_mod,4L #define SN_id_smime_mod_ets_eSignature_88 "id-smime-mod-ets-eSignature-88" #define NID_id_smime_mod_ets_eSignature_88 200 #define OBJ_id_smime_mod_ets_eSignature_88 OBJ_id_smime_mod,5L #define SN_id_smime_mod_ets_eSignature_97 "id-smime-mod-ets-eSignature-97" #define NID_id_smime_mod_ets_eSignature_97 201 #define OBJ_id_smime_mod_ets_eSignature_97 OBJ_id_smime_mod,6L #define SN_id_smime_mod_ets_eSigPolicy_88 "id-smime-mod-ets-eSigPolicy-88" #define NID_id_smime_mod_ets_eSigPolicy_88 202 #define OBJ_id_smime_mod_ets_eSigPolicy_88 OBJ_id_smime_mod,7L #define SN_id_smime_mod_ets_eSigPolicy_97 "id-smime-mod-ets-eSigPolicy-97" #define NID_id_smime_mod_ets_eSigPolicy_97 203 #define OBJ_id_smime_mod_ets_eSigPolicy_97 OBJ_id_smime_mod,8L #define SN_id_smime_ct_receipt "id-smime-ct-receipt" #define NID_id_smime_ct_receipt 204 #define OBJ_id_smime_ct_receipt OBJ_id_smime_ct,1L #define SN_id_smime_ct_authData "id-smime-ct-authData" #define NID_id_smime_ct_authData 205 #define OBJ_id_smime_ct_authData OBJ_id_smime_ct,2L #define SN_id_smime_ct_publishCert "id-smime-ct-publishCert" #define NID_id_smime_ct_publishCert 206 #define OBJ_id_smime_ct_publishCert OBJ_id_smime_ct,3L #define SN_id_smime_ct_TSTInfo "id-smime-ct-TSTInfo" #define NID_id_smime_ct_TSTInfo 207 #define OBJ_id_smime_ct_TSTInfo OBJ_id_smime_ct,4L #define SN_id_smime_ct_TDTInfo "id-smime-ct-TDTInfo" #define NID_id_smime_ct_TDTInfo 208 #define OBJ_id_smime_ct_TDTInfo OBJ_id_smime_ct,5L #define SN_id_smime_ct_contentInfo "id-smime-ct-contentInfo" #define NID_id_smime_ct_contentInfo 209 #define OBJ_id_smime_ct_contentInfo OBJ_id_smime_ct,6L #define SN_id_smime_ct_DVCSRequestData "id-smime-ct-DVCSRequestData" #define NID_id_smime_ct_DVCSRequestData 210 #define OBJ_id_smime_ct_DVCSRequestData OBJ_id_smime_ct,7L #define SN_id_smime_ct_DVCSResponseData "id-smime-ct-DVCSResponseData" #define NID_id_smime_ct_DVCSResponseData 211 #define OBJ_id_smime_ct_DVCSResponseData OBJ_id_smime_ct,8L #define SN_id_smime_ct_compressedData "id-smime-ct-compressedData" #define NID_id_smime_ct_compressedData 786 #define OBJ_id_smime_ct_compressedData OBJ_id_smime_ct,9L #define SN_id_ct_asciiTextWithCRLF "id-ct-asciiTextWithCRLF" #define NID_id_ct_asciiTextWithCRLF 787 #define OBJ_id_ct_asciiTextWithCRLF OBJ_id_smime_ct,27L #define SN_id_smime_aa_receiptRequest "id-smime-aa-receiptRequest" #define NID_id_smime_aa_receiptRequest 212 #define OBJ_id_smime_aa_receiptRequest OBJ_id_smime_aa,1L #define SN_id_smime_aa_securityLabel "id-smime-aa-securityLabel" #define NID_id_smime_aa_securityLabel 213 #define OBJ_id_smime_aa_securityLabel OBJ_id_smime_aa,2L #define SN_id_smime_aa_mlExpandHistory "id-smime-aa-mlExpandHistory" #define NID_id_smime_aa_mlExpandHistory 214 #define OBJ_id_smime_aa_mlExpandHistory OBJ_id_smime_aa,3L #define SN_id_smime_aa_contentHint "id-smime-aa-contentHint" #define NID_id_smime_aa_contentHint 215 #define OBJ_id_smime_aa_contentHint OBJ_id_smime_aa,4L #define SN_id_smime_aa_msgSigDigest "id-smime-aa-msgSigDigest" #define NID_id_smime_aa_msgSigDigest 216 #define OBJ_id_smime_aa_msgSigDigest OBJ_id_smime_aa,5L #define SN_id_smime_aa_encapContentType "id-smime-aa-encapContentType" #define NID_id_smime_aa_encapContentType 217 #define OBJ_id_smime_aa_encapContentType OBJ_id_smime_aa,6L #define SN_id_smime_aa_contentIdentifier "id-smime-aa-contentIdentifier" #define NID_id_smime_aa_contentIdentifier 218 #define OBJ_id_smime_aa_contentIdentifier OBJ_id_smime_aa,7L #define SN_id_smime_aa_macValue "id-smime-aa-macValue" #define NID_id_smime_aa_macValue 219 #define OBJ_id_smime_aa_macValue OBJ_id_smime_aa,8L #define SN_id_smime_aa_equivalentLabels "id-smime-aa-equivalentLabels" #define NID_id_smime_aa_equivalentLabels 220 #define OBJ_id_smime_aa_equivalentLabels OBJ_id_smime_aa,9L #define SN_id_smime_aa_contentReference "id-smime-aa-contentReference" #define NID_id_smime_aa_contentReference 221 #define OBJ_id_smime_aa_contentReference OBJ_id_smime_aa,10L #define SN_id_smime_aa_encrypKeyPref "id-smime-aa-encrypKeyPref" #define NID_id_smime_aa_encrypKeyPref 222 #define OBJ_id_smime_aa_encrypKeyPref OBJ_id_smime_aa,11L #define SN_id_smime_aa_signingCertificate "id-smime-aa-signingCertificate" #define NID_id_smime_aa_signingCertificate 223 #define OBJ_id_smime_aa_signingCertificate OBJ_id_smime_aa,12L #define SN_id_smime_aa_smimeEncryptCerts "id-smime-aa-smimeEncryptCerts" #define NID_id_smime_aa_smimeEncryptCerts 224 #define OBJ_id_smime_aa_smimeEncryptCerts OBJ_id_smime_aa,13L #define SN_id_smime_aa_timeStampToken "id-smime-aa-timeStampToken" #define NID_id_smime_aa_timeStampToken 225 #define OBJ_id_smime_aa_timeStampToken OBJ_id_smime_aa,14L #define SN_id_smime_aa_ets_sigPolicyId "id-smime-aa-ets-sigPolicyId" #define NID_id_smime_aa_ets_sigPolicyId 226 #define OBJ_id_smime_aa_ets_sigPolicyId OBJ_id_smime_aa,15L #define SN_id_smime_aa_ets_commitmentType "id-smime-aa-ets-commitmentType" #define NID_id_smime_aa_ets_commitmentType 227 #define OBJ_id_smime_aa_ets_commitmentType OBJ_id_smime_aa,16L #define SN_id_smime_aa_ets_signerLocation "id-smime-aa-ets-signerLocation" #define NID_id_smime_aa_ets_signerLocation 228 #define OBJ_id_smime_aa_ets_signerLocation OBJ_id_smime_aa,17L #define SN_id_smime_aa_ets_signerAttr "id-smime-aa-ets-signerAttr" #define NID_id_smime_aa_ets_signerAttr 229 #define OBJ_id_smime_aa_ets_signerAttr OBJ_id_smime_aa,18L #define SN_id_smime_aa_ets_otherSigCert "id-smime-aa-ets-otherSigCert" #define NID_id_smime_aa_ets_otherSigCert 230 #define OBJ_id_smime_aa_ets_otherSigCert OBJ_id_smime_aa,19L #define SN_id_smime_aa_ets_contentTimestamp "id-smime-aa-ets-contentTimestamp" #define NID_id_smime_aa_ets_contentTimestamp 231 #define OBJ_id_smime_aa_ets_contentTimestamp OBJ_id_smime_aa,20L #define SN_id_smime_aa_ets_CertificateRefs "id-smime-aa-ets-CertificateRefs" #define NID_id_smime_aa_ets_CertificateRefs 232 #define OBJ_id_smime_aa_ets_CertificateRefs OBJ_id_smime_aa,21L #define SN_id_smime_aa_ets_RevocationRefs "id-smime-aa-ets-RevocationRefs" #define NID_id_smime_aa_ets_RevocationRefs 233 #define OBJ_id_smime_aa_ets_RevocationRefs OBJ_id_smime_aa,22L #define SN_id_smime_aa_ets_certValues "id-smime-aa-ets-certValues" #define NID_id_smime_aa_ets_certValues 234 #define OBJ_id_smime_aa_ets_certValues OBJ_id_smime_aa,23L #define SN_id_smime_aa_ets_revocationValues "id-smime-aa-ets-revocationValues" #define NID_id_smime_aa_ets_revocationValues 235 #define OBJ_id_smime_aa_ets_revocationValues OBJ_id_smime_aa,24L #define SN_id_smime_aa_ets_escTimeStamp "id-smime-aa-ets-escTimeStamp" #define NID_id_smime_aa_ets_escTimeStamp 236 #define OBJ_id_smime_aa_ets_escTimeStamp OBJ_id_smime_aa,25L #define SN_id_smime_aa_ets_certCRLTimestamp "id-smime-aa-ets-certCRLTimestamp" #define NID_id_smime_aa_ets_certCRLTimestamp 237 #define OBJ_id_smime_aa_ets_certCRLTimestamp OBJ_id_smime_aa,26L #define SN_id_smime_aa_ets_archiveTimeStamp "id-smime-aa-ets-archiveTimeStamp" #define NID_id_smime_aa_ets_archiveTimeStamp 238 #define OBJ_id_smime_aa_ets_archiveTimeStamp OBJ_id_smime_aa,27L #define SN_id_smime_aa_signatureType "id-smime-aa-signatureType" #define NID_id_smime_aa_signatureType 239 #define OBJ_id_smime_aa_signatureType OBJ_id_smime_aa,28L #define SN_id_smime_aa_dvcs_dvc "id-smime-aa-dvcs-dvc" #define NID_id_smime_aa_dvcs_dvc 240 #define OBJ_id_smime_aa_dvcs_dvc OBJ_id_smime_aa,29L #define SN_id_smime_alg_ESDHwith3DES "id-smime-alg-ESDHwith3DES" #define NID_id_smime_alg_ESDHwith3DES 241 #define OBJ_id_smime_alg_ESDHwith3DES OBJ_id_smime_alg,1L #define SN_id_smime_alg_ESDHwithRC2 "id-smime-alg-ESDHwithRC2" #define NID_id_smime_alg_ESDHwithRC2 242 #define OBJ_id_smime_alg_ESDHwithRC2 OBJ_id_smime_alg,2L #define SN_id_smime_alg_3DESwrap "id-smime-alg-3DESwrap" #define NID_id_smime_alg_3DESwrap 243 #define OBJ_id_smime_alg_3DESwrap OBJ_id_smime_alg,3L #define SN_id_smime_alg_RC2wrap "id-smime-alg-RC2wrap" #define NID_id_smime_alg_RC2wrap 244 #define OBJ_id_smime_alg_RC2wrap OBJ_id_smime_alg,4L #define SN_id_smime_alg_ESDH "id-smime-alg-ESDH" #define NID_id_smime_alg_ESDH 245 #define OBJ_id_smime_alg_ESDH OBJ_id_smime_alg,5L #define SN_id_smime_alg_CMS3DESwrap "id-smime-alg-CMS3DESwrap" #define NID_id_smime_alg_CMS3DESwrap 246 #define OBJ_id_smime_alg_CMS3DESwrap OBJ_id_smime_alg,6L #define SN_id_smime_alg_CMSRC2wrap "id-smime-alg-CMSRC2wrap" #define NID_id_smime_alg_CMSRC2wrap 247 #define OBJ_id_smime_alg_CMSRC2wrap OBJ_id_smime_alg,7L #define SN_id_alg_PWRI_KEK "id-alg-PWRI-KEK" #define NID_id_alg_PWRI_KEK 893 #define OBJ_id_alg_PWRI_KEK OBJ_id_smime_alg,9L #define SN_id_smime_cd_ldap "id-smime-cd-ldap" #define NID_id_smime_cd_ldap 248 #define OBJ_id_smime_cd_ldap OBJ_id_smime_cd,1L #define SN_id_smime_spq_ets_sqt_uri "id-smime-spq-ets-sqt-uri" #define NID_id_smime_spq_ets_sqt_uri 249 #define OBJ_id_smime_spq_ets_sqt_uri OBJ_id_smime_spq,1L #define SN_id_smime_spq_ets_sqt_unotice "id-smime-spq-ets-sqt-unotice" #define NID_id_smime_spq_ets_sqt_unotice 250 #define OBJ_id_smime_spq_ets_sqt_unotice OBJ_id_smime_spq,2L #define SN_id_smime_cti_ets_proofOfOrigin "id-smime-cti-ets-proofOfOrigin" #define NID_id_smime_cti_ets_proofOfOrigin 251 #define OBJ_id_smime_cti_ets_proofOfOrigin OBJ_id_smime_cti,1L #define SN_id_smime_cti_ets_proofOfReceipt "id-smime-cti-ets-proofOfReceipt" #define NID_id_smime_cti_ets_proofOfReceipt 252 #define OBJ_id_smime_cti_ets_proofOfReceipt OBJ_id_smime_cti,2L #define SN_id_smime_cti_ets_proofOfDelivery "id-smime-cti-ets-proofOfDelivery" #define NID_id_smime_cti_ets_proofOfDelivery 253 #define OBJ_id_smime_cti_ets_proofOfDelivery OBJ_id_smime_cti,3L #define SN_id_smime_cti_ets_proofOfSender "id-smime-cti-ets-proofOfSender" #define NID_id_smime_cti_ets_proofOfSender 254 #define OBJ_id_smime_cti_ets_proofOfSender OBJ_id_smime_cti,4L #define SN_id_smime_cti_ets_proofOfApproval "id-smime-cti-ets-proofOfApproval" #define NID_id_smime_cti_ets_proofOfApproval 255 #define OBJ_id_smime_cti_ets_proofOfApproval OBJ_id_smime_cti,5L #define SN_id_smime_cti_ets_proofOfCreation "id-smime-cti-ets-proofOfCreation" #define NID_id_smime_cti_ets_proofOfCreation 256 #define OBJ_id_smime_cti_ets_proofOfCreation OBJ_id_smime_cti,6L #define LN_friendlyName "friendlyName" #define NID_friendlyName 156 #define OBJ_friendlyName OBJ_pkcs9,20L #define LN_localKeyID "localKeyID" #define NID_localKeyID 157 #define OBJ_localKeyID OBJ_pkcs9,21L #define SN_ms_csp_name "CSPName" #define LN_ms_csp_name "Microsoft CSP Name" #define NID_ms_csp_name 417 #define OBJ_ms_csp_name 1L,3L,6L,1L,4L,1L,311L,17L,1L #define SN_LocalKeySet "LocalKeySet" #define LN_LocalKeySet "Microsoft Local Key set" #define NID_LocalKeySet 856 #define OBJ_LocalKeySet 1L,3L,6L,1L,4L,1L,311L,17L,2L #define OBJ_certTypes OBJ_pkcs9,22L #define LN_x509Certificate "x509Certificate" #define NID_x509Certificate 158 #define OBJ_x509Certificate OBJ_certTypes,1L #define LN_sdsiCertificate "sdsiCertificate" #define NID_sdsiCertificate 159 #define OBJ_sdsiCertificate OBJ_certTypes,2L #define OBJ_crlTypes OBJ_pkcs9,23L #define LN_x509Crl "x509Crl" #define NID_x509Crl 160 #define OBJ_x509Crl OBJ_crlTypes,1L #define OBJ_pkcs12 OBJ_pkcs,12L #define OBJ_pkcs12_pbeids OBJ_pkcs12,1L #define SN_pbe_WithSHA1And128BitRC4 "PBE-SHA1-RC4-128" #define LN_pbe_WithSHA1And128BitRC4 "pbeWithSHA1And128BitRC4" #define NID_pbe_WithSHA1And128BitRC4 144 #define OBJ_pbe_WithSHA1And128BitRC4 OBJ_pkcs12_pbeids,1L #define SN_pbe_WithSHA1And40BitRC4 "PBE-SHA1-RC4-40" #define LN_pbe_WithSHA1And40BitRC4 "pbeWithSHA1And40BitRC4" #define NID_pbe_WithSHA1And40BitRC4 145 #define OBJ_pbe_WithSHA1And40BitRC4 OBJ_pkcs12_pbeids,2L #define SN_pbe_WithSHA1And3_Key_TripleDES_CBC "PBE-SHA1-3DES" #define LN_pbe_WithSHA1And3_Key_TripleDES_CBC "pbeWithSHA1And3-KeyTripleDES-CBC" #define NID_pbe_WithSHA1And3_Key_TripleDES_CBC 146 #define OBJ_pbe_WithSHA1And3_Key_TripleDES_CBC OBJ_pkcs12_pbeids,3L #define SN_pbe_WithSHA1And2_Key_TripleDES_CBC "PBE-SHA1-2DES" #define LN_pbe_WithSHA1And2_Key_TripleDES_CBC "pbeWithSHA1And2-KeyTripleDES-CBC" #define NID_pbe_WithSHA1And2_Key_TripleDES_CBC 147 #define OBJ_pbe_WithSHA1And2_Key_TripleDES_CBC OBJ_pkcs12_pbeids,4L #define SN_pbe_WithSHA1And128BitRC2_CBC "PBE-SHA1-RC2-128" #define LN_pbe_WithSHA1And128BitRC2_CBC "pbeWithSHA1And128BitRC2-CBC" #define NID_pbe_WithSHA1And128BitRC2_CBC 148 #define OBJ_pbe_WithSHA1And128BitRC2_CBC OBJ_pkcs12_pbeids,5L #define SN_pbe_WithSHA1And40BitRC2_CBC "PBE-SHA1-RC2-40" #define LN_pbe_WithSHA1And40BitRC2_CBC "pbeWithSHA1And40BitRC2-CBC" #define NID_pbe_WithSHA1And40BitRC2_CBC 149 #define OBJ_pbe_WithSHA1And40BitRC2_CBC OBJ_pkcs12_pbeids,6L #define OBJ_pkcs12_Version1 OBJ_pkcs12,10L #define OBJ_pkcs12_BagIds OBJ_pkcs12_Version1,1L #define LN_keyBag "keyBag" #define NID_keyBag 150 #define OBJ_keyBag OBJ_pkcs12_BagIds,1L #define LN_pkcs8ShroudedKeyBag "pkcs8ShroudedKeyBag" #define NID_pkcs8ShroudedKeyBag 151 #define OBJ_pkcs8ShroudedKeyBag OBJ_pkcs12_BagIds,2L #define LN_certBag "certBag" #define NID_certBag 152 #define OBJ_certBag OBJ_pkcs12_BagIds,3L #define LN_crlBag "crlBag" #define NID_crlBag 153 #define OBJ_crlBag OBJ_pkcs12_BagIds,4L #define LN_secretBag "secretBag" #define NID_secretBag 154 #define OBJ_secretBag OBJ_pkcs12_BagIds,5L #define LN_safeContentsBag "safeContentsBag" #define NID_safeContentsBag 155 #define OBJ_safeContentsBag OBJ_pkcs12_BagIds,6L #define SN_md2 "MD2" #define LN_md2 "md2" #define NID_md2 3 #define OBJ_md2 OBJ_rsadsi,2L,2L #define SN_md4 "MD4" #define LN_md4 "md4" #define NID_md4 257 #define OBJ_md4 OBJ_rsadsi,2L,4L #define SN_md5 "MD5" #define LN_md5 "md5" #define NID_md5 4 #define OBJ_md5 OBJ_rsadsi,2L,5L #define SN_md5_sha1 "MD5-SHA1" #define LN_md5_sha1 "md5-sha1" #define NID_md5_sha1 114 #define LN_hmacWithMD5 "hmacWithMD5" #define NID_hmacWithMD5 797 #define OBJ_hmacWithMD5 OBJ_rsadsi,2L,6L #define LN_hmacWithSHA1 "hmacWithSHA1" #define NID_hmacWithSHA1 163 #define OBJ_hmacWithSHA1 OBJ_rsadsi,2L,7L #define LN_hmacWithSHA224 "hmacWithSHA224" #define NID_hmacWithSHA224 798 #define OBJ_hmacWithSHA224 OBJ_rsadsi,2L,8L #define LN_hmacWithSHA256 "hmacWithSHA256" #define NID_hmacWithSHA256 799 #define OBJ_hmacWithSHA256 OBJ_rsadsi,2L,9L #define LN_hmacWithSHA384 "hmacWithSHA384" #define NID_hmacWithSHA384 800 #define OBJ_hmacWithSHA384 OBJ_rsadsi,2L,10L #define LN_hmacWithSHA512 "hmacWithSHA512" #define NID_hmacWithSHA512 801 #define OBJ_hmacWithSHA512 OBJ_rsadsi,2L,11L #define SN_rc2_cbc "RC2-CBC" #define LN_rc2_cbc "rc2-cbc" #define NID_rc2_cbc 37 #define OBJ_rc2_cbc OBJ_rsadsi,3L,2L #define SN_rc2_ecb "RC2-ECB" #define LN_rc2_ecb "rc2-ecb" #define NID_rc2_ecb 38 #define SN_rc2_cfb64 "RC2-CFB" #define LN_rc2_cfb64 "rc2-cfb" #define NID_rc2_cfb64 39 #define SN_rc2_ofb64 "RC2-OFB" #define LN_rc2_ofb64 "rc2-ofb" #define NID_rc2_ofb64 40 #define SN_rc2_40_cbc "RC2-40-CBC" #define LN_rc2_40_cbc "rc2-40-cbc" #define NID_rc2_40_cbc 98 #define SN_rc2_64_cbc "RC2-64-CBC" #define LN_rc2_64_cbc "rc2-64-cbc" #define NID_rc2_64_cbc 166 #define SN_rc4 "RC4" #define LN_rc4 "rc4" #define NID_rc4 5 #define OBJ_rc4 OBJ_rsadsi,3L,4L #define SN_rc4_40 "RC4-40" #define LN_rc4_40 "rc4-40" #define NID_rc4_40 97 #define SN_des_ede3_cbc "DES-EDE3-CBC" #define LN_des_ede3_cbc "des-ede3-cbc" #define NID_des_ede3_cbc 44 #define OBJ_des_ede3_cbc OBJ_rsadsi,3L,7L #define SN_rc5_cbc "RC5-CBC" #define LN_rc5_cbc "rc5-cbc" #define NID_rc5_cbc 120 #define OBJ_rc5_cbc OBJ_rsadsi,3L,8L #define SN_rc5_ecb "RC5-ECB" #define LN_rc5_ecb "rc5-ecb" #define NID_rc5_ecb 121 #define SN_rc5_cfb64 "RC5-CFB" #define LN_rc5_cfb64 "rc5-cfb" #define NID_rc5_cfb64 122 #define SN_rc5_ofb64 "RC5-OFB" #define LN_rc5_ofb64 "rc5-ofb" #define NID_rc5_ofb64 123 #define SN_ms_ext_req "msExtReq" #define LN_ms_ext_req "Microsoft Extension Request" #define NID_ms_ext_req 171 #define OBJ_ms_ext_req 1L,3L,6L,1L,4L,1L,311L,2L,1L,14L #define SN_ms_code_ind "msCodeInd" #define LN_ms_code_ind "Microsoft Individual Code Signing" #define NID_ms_code_ind 134 #define OBJ_ms_code_ind 1L,3L,6L,1L,4L,1L,311L,2L,1L,21L #define SN_ms_code_com "msCodeCom" #define LN_ms_code_com "Microsoft Commercial Code Signing" #define NID_ms_code_com 135 #define OBJ_ms_code_com 1L,3L,6L,1L,4L,1L,311L,2L,1L,22L #define SN_ms_ctl_sign "msCTLSign" #define LN_ms_ctl_sign "Microsoft Trust List Signing" #define NID_ms_ctl_sign 136 #define OBJ_ms_ctl_sign 1L,3L,6L,1L,4L,1L,311L,10L,3L,1L #define SN_ms_sgc "msSGC" #define LN_ms_sgc "Microsoft Server Gated Crypto" #define NID_ms_sgc 137 #define OBJ_ms_sgc 1L,3L,6L,1L,4L,1L,311L,10L,3L,3L #define SN_ms_efs "msEFS" #define LN_ms_efs "Microsoft Encrypted File System" #define NID_ms_efs 138 #define OBJ_ms_efs 1L,3L,6L,1L,4L,1L,311L,10L,3L,4L #define SN_ms_smartcard_login "msSmartcardLogin" #define LN_ms_smartcard_login "Microsoft Smartcardlogin" #define NID_ms_smartcard_login 648 #define OBJ_ms_smartcard_login 1L,3L,6L,1L,4L,1L,311L,20L,2L,2L #define SN_ms_upn "msUPN" #define LN_ms_upn "Microsoft Universal Principal Name" #define NID_ms_upn 649 #define OBJ_ms_upn 1L,3L,6L,1L,4L,1L,311L,20L,2L,3L #define SN_idea_cbc "IDEA-CBC" #define LN_idea_cbc "idea-cbc" #define NID_idea_cbc 34 #define OBJ_idea_cbc 1L,3L,6L,1L,4L,1L,188L,7L,1L,1L,2L #define SN_idea_ecb "IDEA-ECB" #define LN_idea_ecb "idea-ecb" #define NID_idea_ecb 36 #define SN_idea_cfb64 "IDEA-CFB" #define LN_idea_cfb64 "idea-cfb" #define NID_idea_cfb64 35 #define SN_idea_ofb64 "IDEA-OFB" #define LN_idea_ofb64 "idea-ofb" #define NID_idea_ofb64 46 #define SN_bf_cbc "BF-CBC" #define LN_bf_cbc "bf-cbc" #define NID_bf_cbc 91 #define OBJ_bf_cbc 1L,3L,6L,1L,4L,1L,3029L,1L,2L #define SN_bf_ecb "BF-ECB" #define LN_bf_ecb "bf-ecb" #define NID_bf_ecb 92 #define SN_bf_cfb64 "BF-CFB" #define LN_bf_cfb64 "bf-cfb" #define NID_bf_cfb64 93 #define SN_bf_ofb64 "BF-OFB" #define LN_bf_ofb64 "bf-ofb" #define NID_bf_ofb64 94 #define SN_id_pkix "PKIX" #define NID_id_pkix 127 #define OBJ_id_pkix 1L,3L,6L,1L,5L,5L,7L #define SN_id_pkix_mod "id-pkix-mod" #define NID_id_pkix_mod 258 #define OBJ_id_pkix_mod OBJ_id_pkix,0L #define SN_id_pe "id-pe" #define NID_id_pe 175 #define OBJ_id_pe OBJ_id_pkix,1L #define SN_id_qt "id-qt" #define NID_id_qt 259 #define OBJ_id_qt OBJ_id_pkix,2L #define SN_id_kp "id-kp" #define NID_id_kp 128 #define OBJ_id_kp OBJ_id_pkix,3L #define SN_id_it "id-it" #define NID_id_it 260 #define OBJ_id_it OBJ_id_pkix,4L #define SN_id_pkip "id-pkip" #define NID_id_pkip 261 #define OBJ_id_pkip OBJ_id_pkix,5L #define SN_id_alg "id-alg" #define NID_id_alg 262 #define OBJ_id_alg OBJ_id_pkix,6L #define SN_id_cmc "id-cmc" #define NID_id_cmc 263 #define OBJ_id_cmc OBJ_id_pkix,7L #define SN_id_on "id-on" #define NID_id_on 264 #define OBJ_id_on OBJ_id_pkix,8L #define SN_id_pda "id-pda" #define NID_id_pda 265 #define OBJ_id_pda OBJ_id_pkix,9L #define SN_id_aca "id-aca" #define NID_id_aca 266 #define OBJ_id_aca OBJ_id_pkix,10L #define SN_id_qcs "id-qcs" #define NID_id_qcs 267 #define OBJ_id_qcs OBJ_id_pkix,11L #define SN_id_cct "id-cct" #define NID_id_cct 268 #define OBJ_id_cct OBJ_id_pkix,12L #define SN_id_ppl "id-ppl" #define NID_id_ppl 662 #define OBJ_id_ppl OBJ_id_pkix,21L #define SN_id_ad "id-ad" #define NID_id_ad 176 #define OBJ_id_ad OBJ_id_pkix,48L #define SN_id_pkix1_explicit_88 "id-pkix1-explicit-88" #define NID_id_pkix1_explicit_88 269 #define OBJ_id_pkix1_explicit_88 OBJ_id_pkix_mod,1L #define SN_id_pkix1_implicit_88 "id-pkix1-implicit-88" #define NID_id_pkix1_implicit_88 270 #define OBJ_id_pkix1_implicit_88 OBJ_id_pkix_mod,2L #define SN_id_pkix1_explicit_93 "id-pkix1-explicit-93" #define NID_id_pkix1_explicit_93 271 #define OBJ_id_pkix1_explicit_93 OBJ_id_pkix_mod,3L #define SN_id_pkix1_implicit_93 "id-pkix1-implicit-93" #define NID_id_pkix1_implicit_93 272 #define OBJ_id_pkix1_implicit_93 OBJ_id_pkix_mod,4L #define SN_id_mod_crmf "id-mod-crmf" #define NID_id_mod_crmf 273 #define OBJ_id_mod_crmf OBJ_id_pkix_mod,5L #define SN_id_mod_cmc "id-mod-cmc" #define NID_id_mod_cmc 274 #define OBJ_id_mod_cmc OBJ_id_pkix_mod,6L #define SN_id_mod_kea_profile_88 "id-mod-kea-profile-88" #define NID_id_mod_kea_profile_88 275 #define OBJ_id_mod_kea_profile_88 OBJ_id_pkix_mod,7L #define SN_id_mod_kea_profile_93 "id-mod-kea-profile-93" #define NID_id_mod_kea_profile_93 276 #define OBJ_id_mod_kea_profile_93 OBJ_id_pkix_mod,8L #define SN_id_mod_cmp "id-mod-cmp" #define NID_id_mod_cmp 277 #define OBJ_id_mod_cmp OBJ_id_pkix_mod,9L #define SN_id_mod_qualified_cert_88 "id-mod-qualified-cert-88" #define NID_id_mod_qualified_cert_88 278 #define OBJ_id_mod_qualified_cert_88 OBJ_id_pkix_mod,10L #define SN_id_mod_qualified_cert_93 "id-mod-qualified-cert-93" #define NID_id_mod_qualified_cert_93 279 #define OBJ_id_mod_qualified_cert_93 OBJ_id_pkix_mod,11L #define SN_id_mod_attribute_cert "id-mod-attribute-cert" #define NID_id_mod_attribute_cert 280 #define OBJ_id_mod_attribute_cert OBJ_id_pkix_mod,12L #define SN_id_mod_timestamp_protocol "id-mod-timestamp-protocol" #define NID_id_mod_timestamp_protocol 281 #define OBJ_id_mod_timestamp_protocol OBJ_id_pkix_mod,13L #define SN_id_mod_ocsp "id-mod-ocsp" #define NID_id_mod_ocsp 282 #define OBJ_id_mod_ocsp OBJ_id_pkix_mod,14L #define SN_id_mod_dvcs "id-mod-dvcs" #define NID_id_mod_dvcs 283 #define OBJ_id_mod_dvcs OBJ_id_pkix_mod,15L #define SN_id_mod_cmp2000 "id-mod-cmp2000" #define NID_id_mod_cmp2000 284 #define OBJ_id_mod_cmp2000 OBJ_id_pkix_mod,16L #define SN_info_access "authorityInfoAccess" #define LN_info_access "Authority Information Access" #define NID_info_access 177 #define OBJ_info_access OBJ_id_pe,1L #define SN_biometricInfo "biometricInfo" #define LN_biometricInfo "Biometric Info" #define NID_biometricInfo 285 #define OBJ_biometricInfo OBJ_id_pe,2L #define SN_qcStatements "qcStatements" #define NID_qcStatements 286 #define OBJ_qcStatements OBJ_id_pe,3L #define SN_ac_auditEntity "ac-auditEntity" #define NID_ac_auditEntity 287 #define OBJ_ac_auditEntity OBJ_id_pe,4L #define SN_ac_targeting "ac-targeting" #define NID_ac_targeting 288 #define OBJ_ac_targeting OBJ_id_pe,5L #define SN_aaControls "aaControls" #define NID_aaControls 289 #define OBJ_aaControls OBJ_id_pe,6L #define SN_sbgp_ipAddrBlock "sbgp-ipAddrBlock" #define NID_sbgp_ipAddrBlock 290 #define OBJ_sbgp_ipAddrBlock OBJ_id_pe,7L #define SN_sbgp_autonomousSysNum "sbgp-autonomousSysNum" #define NID_sbgp_autonomousSysNum 291 #define OBJ_sbgp_autonomousSysNum OBJ_id_pe,8L #define SN_sbgp_routerIdentifier "sbgp-routerIdentifier" #define NID_sbgp_routerIdentifier 292 #define OBJ_sbgp_routerIdentifier OBJ_id_pe,9L #define SN_ac_proxying "ac-proxying" #define NID_ac_proxying 397 #define OBJ_ac_proxying OBJ_id_pe,10L #define SN_sinfo_access "subjectInfoAccess" #define LN_sinfo_access "Subject Information Access" #define NID_sinfo_access 398 #define OBJ_sinfo_access OBJ_id_pe,11L #define SN_proxyCertInfo "proxyCertInfo" #define LN_proxyCertInfo "Proxy Certificate Information" #define NID_proxyCertInfo 663 #define OBJ_proxyCertInfo OBJ_id_pe,14L #define SN_id_qt_cps "id-qt-cps" #define LN_id_qt_cps "Policy Qualifier CPS" #define NID_id_qt_cps 164 #define OBJ_id_qt_cps OBJ_id_qt,1L #define SN_id_qt_unotice "id-qt-unotice" #define LN_id_qt_unotice "Policy Qualifier User Notice" #define NID_id_qt_unotice 165 #define OBJ_id_qt_unotice OBJ_id_qt,2L #define SN_textNotice "textNotice" #define NID_textNotice 293 #define OBJ_textNotice OBJ_id_qt,3L #define SN_server_auth "serverAuth" #define LN_server_auth "TLS Web Server Authentication" #define NID_server_auth 129 #define OBJ_server_auth OBJ_id_kp,1L #define SN_client_auth "clientAuth" #define LN_client_auth "TLS Web Client Authentication" #define NID_client_auth 130 #define OBJ_client_auth OBJ_id_kp,2L #define SN_code_sign "codeSigning" #define LN_code_sign "Code Signing" #define NID_code_sign 131 #define OBJ_code_sign OBJ_id_kp,3L #define SN_email_protect "emailProtection" #define LN_email_protect "E-mail Protection" #define NID_email_protect 132 #define OBJ_email_protect OBJ_id_kp,4L #define SN_ipsecEndSystem "ipsecEndSystem" #define LN_ipsecEndSystem "IPSec End System" #define NID_ipsecEndSystem 294 #define OBJ_ipsecEndSystem OBJ_id_kp,5L #define SN_ipsecTunnel "ipsecTunnel" #define LN_ipsecTunnel "IPSec Tunnel" #define NID_ipsecTunnel 295 #define OBJ_ipsecTunnel OBJ_id_kp,6L #define SN_ipsecUser "ipsecUser" #define LN_ipsecUser "IPSec User" #define NID_ipsecUser 296 #define OBJ_ipsecUser OBJ_id_kp,7L #define SN_time_stamp "timeStamping" #define LN_time_stamp "Time Stamping" #define NID_time_stamp 133 #define OBJ_time_stamp OBJ_id_kp,8L #define SN_OCSP_sign "OCSPSigning" #define LN_OCSP_sign "OCSP Signing" #define NID_OCSP_sign 180 #define OBJ_OCSP_sign OBJ_id_kp,9L #define SN_dvcs "DVCS" #define LN_dvcs "dvcs" #define NID_dvcs 297 #define OBJ_dvcs OBJ_id_kp,10L #define SN_id_it_caProtEncCert "id-it-caProtEncCert" #define NID_id_it_caProtEncCert 298 #define OBJ_id_it_caProtEncCert OBJ_id_it,1L #define SN_id_it_signKeyPairTypes "id-it-signKeyPairTypes" #define NID_id_it_signKeyPairTypes 299 #define OBJ_id_it_signKeyPairTypes OBJ_id_it,2L #define SN_id_it_encKeyPairTypes "id-it-encKeyPairTypes" #define NID_id_it_encKeyPairTypes 300 #define OBJ_id_it_encKeyPairTypes OBJ_id_it,3L #define SN_id_it_preferredSymmAlg "id-it-preferredSymmAlg" #define NID_id_it_preferredSymmAlg 301 #define OBJ_id_it_preferredSymmAlg OBJ_id_it,4L #define SN_id_it_caKeyUpdateInfo "id-it-caKeyUpdateInfo" #define NID_id_it_caKeyUpdateInfo 302 #define OBJ_id_it_caKeyUpdateInfo OBJ_id_it,5L #define SN_id_it_currentCRL "id-it-currentCRL" #define NID_id_it_currentCRL 303 #define OBJ_id_it_currentCRL OBJ_id_it,6L #define SN_id_it_unsupportedOIDs "id-it-unsupportedOIDs" #define NID_id_it_unsupportedOIDs 304 #define OBJ_id_it_unsupportedOIDs OBJ_id_it,7L #define SN_id_it_subscriptionRequest "id-it-subscriptionRequest" #define NID_id_it_subscriptionRequest 305 #define OBJ_id_it_subscriptionRequest OBJ_id_it,8L #define SN_id_it_subscriptionResponse "id-it-subscriptionResponse" #define NID_id_it_subscriptionResponse 306 #define OBJ_id_it_subscriptionResponse OBJ_id_it,9L #define SN_id_it_keyPairParamReq "id-it-keyPairParamReq" #define NID_id_it_keyPairParamReq 307 #define OBJ_id_it_keyPairParamReq OBJ_id_it,10L #define SN_id_it_keyPairParamRep "id-it-keyPairParamRep" #define NID_id_it_keyPairParamRep 308 #define OBJ_id_it_keyPairParamRep OBJ_id_it,11L #define SN_id_it_revPassphrase "id-it-revPassphrase" #define NID_id_it_revPassphrase 309 #define OBJ_id_it_revPassphrase OBJ_id_it,12L #define SN_id_it_implicitConfirm "id-it-implicitConfirm" #define NID_id_it_implicitConfirm 310 #define OBJ_id_it_implicitConfirm OBJ_id_it,13L #define SN_id_it_confirmWaitTime "id-it-confirmWaitTime" #define NID_id_it_confirmWaitTime 311 #define OBJ_id_it_confirmWaitTime OBJ_id_it,14L #define SN_id_it_origPKIMessage "id-it-origPKIMessage" #define NID_id_it_origPKIMessage 312 #define OBJ_id_it_origPKIMessage OBJ_id_it,15L #define SN_id_it_suppLangTags "id-it-suppLangTags" #define NID_id_it_suppLangTags 784 #define OBJ_id_it_suppLangTags OBJ_id_it,16L #define SN_id_regCtrl "id-regCtrl" #define NID_id_regCtrl 313 #define OBJ_id_regCtrl OBJ_id_pkip,1L #define SN_id_regInfo "id-regInfo" #define NID_id_regInfo 314 #define OBJ_id_regInfo OBJ_id_pkip,2L #define SN_id_regCtrl_regToken "id-regCtrl-regToken" #define NID_id_regCtrl_regToken 315 #define OBJ_id_regCtrl_regToken OBJ_id_regCtrl,1L #define SN_id_regCtrl_authenticator "id-regCtrl-authenticator" #define NID_id_regCtrl_authenticator 316 #define OBJ_id_regCtrl_authenticator OBJ_id_regCtrl,2L #define SN_id_regCtrl_pkiPublicationInfo "id-regCtrl-pkiPublicationInfo" #define NID_id_regCtrl_pkiPublicationInfo 317 #define OBJ_id_regCtrl_pkiPublicationInfo OBJ_id_regCtrl,3L #define SN_id_regCtrl_pkiArchiveOptions "id-regCtrl-pkiArchiveOptions" #define NID_id_regCtrl_pkiArchiveOptions 318 #define OBJ_id_regCtrl_pkiArchiveOptions OBJ_id_regCtrl,4L #define SN_id_regCtrl_oldCertID "id-regCtrl-oldCertID" #define NID_id_regCtrl_oldCertID 319 #define OBJ_id_regCtrl_oldCertID OBJ_id_regCtrl,5L #define SN_id_regCtrl_protocolEncrKey "id-regCtrl-protocolEncrKey" #define NID_id_regCtrl_protocolEncrKey 320 #define OBJ_id_regCtrl_protocolEncrKey OBJ_id_regCtrl,6L #define SN_id_regInfo_utf8Pairs "id-regInfo-utf8Pairs" #define NID_id_regInfo_utf8Pairs 321 #define OBJ_id_regInfo_utf8Pairs OBJ_id_regInfo,1L #define SN_id_regInfo_certReq "id-regInfo-certReq" #define NID_id_regInfo_certReq 322 #define OBJ_id_regInfo_certReq OBJ_id_regInfo,2L #define SN_id_alg_des40 "id-alg-des40" #define NID_id_alg_des40 323 #define OBJ_id_alg_des40 OBJ_id_alg,1L #define SN_id_alg_noSignature "id-alg-noSignature" #define NID_id_alg_noSignature 324 #define OBJ_id_alg_noSignature OBJ_id_alg,2L #define SN_id_alg_dh_sig_hmac_sha1 "id-alg-dh-sig-hmac-sha1" #define NID_id_alg_dh_sig_hmac_sha1 325 #define OBJ_id_alg_dh_sig_hmac_sha1 OBJ_id_alg,3L #define SN_id_alg_dh_pop "id-alg-dh-pop" #define NID_id_alg_dh_pop 326 #define OBJ_id_alg_dh_pop OBJ_id_alg,4L #define SN_id_cmc_statusInfo "id-cmc-statusInfo" #define NID_id_cmc_statusInfo 327 #define OBJ_id_cmc_statusInfo OBJ_id_cmc,1L #define SN_id_cmc_identification "id-cmc-identification" #define NID_id_cmc_identification 328 #define OBJ_id_cmc_identification OBJ_id_cmc,2L #define SN_id_cmc_identityProof "id-cmc-identityProof" #define NID_id_cmc_identityProof 329 #define OBJ_id_cmc_identityProof OBJ_id_cmc,3L #define SN_id_cmc_dataReturn "id-cmc-dataReturn" #define NID_id_cmc_dataReturn 330 #define OBJ_id_cmc_dataReturn OBJ_id_cmc,4L #define SN_id_cmc_transactionId "id-cmc-transactionId" #define NID_id_cmc_transactionId 331 #define OBJ_id_cmc_transactionId OBJ_id_cmc,5L #define SN_id_cmc_senderNonce "id-cmc-senderNonce" #define NID_id_cmc_senderNonce 332 #define OBJ_id_cmc_senderNonce OBJ_id_cmc,6L #define SN_id_cmc_recipientNonce "id-cmc-recipientNonce" #define NID_id_cmc_recipientNonce 333 #define OBJ_id_cmc_recipientNonce OBJ_id_cmc,7L #define SN_id_cmc_addExtensions "id-cmc-addExtensions" #define NID_id_cmc_addExtensions 334 #define OBJ_id_cmc_addExtensions OBJ_id_cmc,8L #define SN_id_cmc_encryptedPOP "id-cmc-encryptedPOP" #define NID_id_cmc_encryptedPOP 335 #define OBJ_id_cmc_encryptedPOP OBJ_id_cmc,9L #define SN_id_cmc_decryptedPOP "id-cmc-decryptedPOP" #define NID_id_cmc_decryptedPOP 336 #define OBJ_id_cmc_decryptedPOP OBJ_id_cmc,10L #define SN_id_cmc_lraPOPWitness "id-cmc-lraPOPWitness" #define NID_id_cmc_lraPOPWitness 337 #define OBJ_id_cmc_lraPOPWitness OBJ_id_cmc,11L #define SN_id_cmc_getCert "id-cmc-getCert" #define NID_id_cmc_getCert 338 #define OBJ_id_cmc_getCert OBJ_id_cmc,15L #define SN_id_cmc_getCRL "id-cmc-getCRL" #define NID_id_cmc_getCRL 339 #define OBJ_id_cmc_getCRL OBJ_id_cmc,16L #define SN_id_cmc_revokeRequest "id-cmc-revokeRequest" #define NID_id_cmc_revokeRequest 340 #define OBJ_id_cmc_revokeRequest OBJ_id_cmc,17L #define SN_id_cmc_regInfo "id-cmc-regInfo" #define NID_id_cmc_regInfo 341 #define OBJ_id_cmc_regInfo OBJ_id_cmc,18L #define SN_id_cmc_responseInfo "id-cmc-responseInfo" #define NID_id_cmc_responseInfo 342 #define OBJ_id_cmc_responseInfo OBJ_id_cmc,19L #define SN_id_cmc_queryPending "id-cmc-queryPending" #define NID_id_cmc_queryPending 343 #define OBJ_id_cmc_queryPending OBJ_id_cmc,21L #define SN_id_cmc_popLinkRandom "id-cmc-popLinkRandom" #define NID_id_cmc_popLinkRandom 344 #define OBJ_id_cmc_popLinkRandom OBJ_id_cmc,22L #define SN_id_cmc_popLinkWitness "id-cmc-popLinkWitness" #define NID_id_cmc_popLinkWitness 345 #define OBJ_id_cmc_popLinkWitness OBJ_id_cmc,23L #define SN_id_cmc_confirmCertAcceptance "id-cmc-confirmCertAcceptance" #define NID_id_cmc_confirmCertAcceptance 346 #define OBJ_id_cmc_confirmCertAcceptance OBJ_id_cmc,24L #define SN_id_on_personalData "id-on-personalData" #define NID_id_on_personalData 347 #define OBJ_id_on_personalData OBJ_id_on,1L #define SN_id_on_permanentIdentifier "id-on-permanentIdentifier" #define LN_id_on_permanentIdentifier "Permanent Identifier" #define NID_id_on_permanentIdentifier 858 #define OBJ_id_on_permanentIdentifier OBJ_id_on,3L #define SN_id_pda_dateOfBirth "id-pda-dateOfBirth" #define NID_id_pda_dateOfBirth 348 #define OBJ_id_pda_dateOfBirth OBJ_id_pda,1L #define SN_id_pda_placeOfBirth "id-pda-placeOfBirth" #define NID_id_pda_placeOfBirth 349 #define OBJ_id_pda_placeOfBirth OBJ_id_pda,2L #define SN_id_pda_gender "id-pda-gender" #define NID_id_pda_gender 351 #define OBJ_id_pda_gender OBJ_id_pda,3L #define SN_id_pda_countryOfCitizenship "id-pda-countryOfCitizenship" #define NID_id_pda_countryOfCitizenship 352 #define OBJ_id_pda_countryOfCitizenship OBJ_id_pda,4L #define SN_id_pda_countryOfResidence "id-pda-countryOfResidence" #define NID_id_pda_countryOfResidence 353 #define OBJ_id_pda_countryOfResidence OBJ_id_pda,5L #define SN_id_aca_authenticationInfo "id-aca-authenticationInfo" #define NID_id_aca_authenticationInfo 354 #define OBJ_id_aca_authenticationInfo OBJ_id_aca,1L #define SN_id_aca_accessIdentity "id-aca-accessIdentity" #define NID_id_aca_accessIdentity 355 #define OBJ_id_aca_accessIdentity OBJ_id_aca,2L #define SN_id_aca_chargingIdentity "id-aca-chargingIdentity" #define NID_id_aca_chargingIdentity 356 #define OBJ_id_aca_chargingIdentity OBJ_id_aca,3L #define SN_id_aca_group "id-aca-group" #define NID_id_aca_group 357 #define OBJ_id_aca_group OBJ_id_aca,4L #define SN_id_aca_role "id-aca-role" #define NID_id_aca_role 358 #define OBJ_id_aca_role OBJ_id_aca,5L #define SN_id_aca_encAttrs "id-aca-encAttrs" #define NID_id_aca_encAttrs 399 #define OBJ_id_aca_encAttrs OBJ_id_aca,6L #define SN_id_qcs_pkixQCSyntax_v1 "id-qcs-pkixQCSyntax-v1" #define NID_id_qcs_pkixQCSyntax_v1 359 #define OBJ_id_qcs_pkixQCSyntax_v1 OBJ_id_qcs,1L #define SN_id_cct_crs "id-cct-crs" #define NID_id_cct_crs 360 #define OBJ_id_cct_crs OBJ_id_cct,1L #define SN_id_cct_PKIData "id-cct-PKIData" #define NID_id_cct_PKIData 361 #define OBJ_id_cct_PKIData OBJ_id_cct,2L #define SN_id_cct_PKIResponse "id-cct-PKIResponse" #define NID_id_cct_PKIResponse 362 #define OBJ_id_cct_PKIResponse OBJ_id_cct,3L #define SN_id_ppl_anyLanguage "id-ppl-anyLanguage" #define LN_id_ppl_anyLanguage "Any language" #define NID_id_ppl_anyLanguage 664 #define OBJ_id_ppl_anyLanguage OBJ_id_ppl,0L #define SN_id_ppl_inheritAll "id-ppl-inheritAll" #define LN_id_ppl_inheritAll "Inherit all" #define NID_id_ppl_inheritAll 665 #define OBJ_id_ppl_inheritAll OBJ_id_ppl,1L #define SN_Independent "id-ppl-independent" #define LN_Independent "Independent" #define NID_Independent 667 #define OBJ_Independent OBJ_id_ppl,2L #define SN_ad_OCSP "OCSP" #define LN_ad_OCSP "OCSP" #define NID_ad_OCSP 178 #define OBJ_ad_OCSP OBJ_id_ad,1L #define SN_ad_ca_issuers "caIssuers" #define LN_ad_ca_issuers "CA Issuers" #define NID_ad_ca_issuers 179 #define OBJ_ad_ca_issuers OBJ_id_ad,2L #define SN_ad_timeStamping "ad_timestamping" #define LN_ad_timeStamping "AD Time Stamping" #define NID_ad_timeStamping 363 #define OBJ_ad_timeStamping OBJ_id_ad,3L #define SN_ad_dvcs "AD_DVCS" #define LN_ad_dvcs "ad dvcs" #define NID_ad_dvcs 364 #define OBJ_ad_dvcs OBJ_id_ad,4L #define SN_caRepository "caRepository" #define LN_caRepository "CA Repository" #define NID_caRepository 785 #define OBJ_caRepository OBJ_id_ad,5L #define OBJ_id_pkix_OCSP OBJ_ad_OCSP #define SN_id_pkix_OCSP_basic "basicOCSPResponse" #define LN_id_pkix_OCSP_basic "Basic OCSP Response" #define NID_id_pkix_OCSP_basic 365 #define OBJ_id_pkix_OCSP_basic OBJ_id_pkix_OCSP,1L #define SN_id_pkix_OCSP_Nonce "Nonce" #define LN_id_pkix_OCSP_Nonce "OCSP Nonce" #define NID_id_pkix_OCSP_Nonce 366 #define OBJ_id_pkix_OCSP_Nonce OBJ_id_pkix_OCSP,2L #define SN_id_pkix_OCSP_CrlID "CrlID" #define LN_id_pkix_OCSP_CrlID "OCSP CRL ID" #define NID_id_pkix_OCSP_CrlID 367 #define OBJ_id_pkix_OCSP_CrlID OBJ_id_pkix_OCSP,3L #define SN_id_pkix_OCSP_acceptableResponses "acceptableResponses" #define LN_id_pkix_OCSP_acceptableResponses "Acceptable OCSP Responses" #define NID_id_pkix_OCSP_acceptableResponses 368 #define OBJ_id_pkix_OCSP_acceptableResponses OBJ_id_pkix_OCSP,4L #define SN_id_pkix_OCSP_noCheck "noCheck" #define LN_id_pkix_OCSP_noCheck "OCSP No Check" #define NID_id_pkix_OCSP_noCheck 369 #define OBJ_id_pkix_OCSP_noCheck OBJ_id_pkix_OCSP,5L #define SN_id_pkix_OCSP_archiveCutoff "archiveCutoff" #define LN_id_pkix_OCSP_archiveCutoff "OCSP Archive Cutoff" #define NID_id_pkix_OCSP_archiveCutoff 370 #define OBJ_id_pkix_OCSP_archiveCutoff OBJ_id_pkix_OCSP,6L #define SN_id_pkix_OCSP_serviceLocator "serviceLocator" #define LN_id_pkix_OCSP_serviceLocator "OCSP Service Locator" #define NID_id_pkix_OCSP_serviceLocator 371 #define OBJ_id_pkix_OCSP_serviceLocator OBJ_id_pkix_OCSP,7L #define SN_id_pkix_OCSP_extendedStatus "extendedStatus" #define LN_id_pkix_OCSP_extendedStatus "Extended OCSP Status" #define NID_id_pkix_OCSP_extendedStatus 372 #define OBJ_id_pkix_OCSP_extendedStatus OBJ_id_pkix_OCSP,8L #define SN_id_pkix_OCSP_valid "valid" #define NID_id_pkix_OCSP_valid 373 #define OBJ_id_pkix_OCSP_valid OBJ_id_pkix_OCSP,9L #define SN_id_pkix_OCSP_path "path" #define NID_id_pkix_OCSP_path 374 #define OBJ_id_pkix_OCSP_path OBJ_id_pkix_OCSP,10L #define SN_id_pkix_OCSP_trustRoot "trustRoot" #define LN_id_pkix_OCSP_trustRoot "Trust Root" #define NID_id_pkix_OCSP_trustRoot 375 #define OBJ_id_pkix_OCSP_trustRoot OBJ_id_pkix_OCSP,11L #define SN_algorithm "algorithm" #define LN_algorithm "algorithm" #define NID_algorithm 376 #define OBJ_algorithm 1L,3L,14L,3L,2L #define SN_md5WithRSA "RSA-NP-MD5" #define LN_md5WithRSA "md5WithRSA" #define NID_md5WithRSA 104 #define OBJ_md5WithRSA OBJ_algorithm,3L #define SN_des_ecb "DES-ECB" #define LN_des_ecb "des-ecb" #define NID_des_ecb 29 #define OBJ_des_ecb OBJ_algorithm,6L #define SN_des_cbc "DES-CBC" #define LN_des_cbc "des-cbc" #define NID_des_cbc 31 #define OBJ_des_cbc OBJ_algorithm,7L #define SN_des_ofb64 "DES-OFB" #define LN_des_ofb64 "des-ofb" #define NID_des_ofb64 45 #define OBJ_des_ofb64 OBJ_algorithm,8L #define SN_des_cfb64 "DES-CFB" #define LN_des_cfb64 "des-cfb" #define NID_des_cfb64 30 #define OBJ_des_cfb64 OBJ_algorithm,9L #define SN_rsaSignature "rsaSignature" #define NID_rsaSignature 377 #define OBJ_rsaSignature OBJ_algorithm,11L #define SN_dsa_2 "DSA-old" #define LN_dsa_2 "dsaEncryption-old" #define NID_dsa_2 67 #define OBJ_dsa_2 OBJ_algorithm,12L #define SN_dsaWithSHA "DSA-SHA" #define LN_dsaWithSHA "dsaWithSHA" #define NID_dsaWithSHA 66 #define OBJ_dsaWithSHA OBJ_algorithm,13L #define SN_shaWithRSAEncryption "RSA-SHA" #define LN_shaWithRSAEncryption "shaWithRSAEncryption" #define NID_shaWithRSAEncryption 42 #define OBJ_shaWithRSAEncryption OBJ_algorithm,15L #define SN_des_ede_ecb "DES-EDE" #define LN_des_ede_ecb "des-ede" #define NID_des_ede_ecb 32 #define OBJ_des_ede_ecb OBJ_algorithm,17L #define SN_des_ede3_ecb "DES-EDE3" #define LN_des_ede3_ecb "des-ede3" #define NID_des_ede3_ecb 33 #define SN_des_ede_cbc "DES-EDE-CBC" #define LN_des_ede_cbc "des-ede-cbc" #define NID_des_ede_cbc 43 #define SN_des_ede_cfb64 "DES-EDE-CFB" #define LN_des_ede_cfb64 "des-ede-cfb" #define NID_des_ede_cfb64 60 #define SN_des_ede3_cfb64 "DES-EDE3-CFB" #define LN_des_ede3_cfb64 "des-ede3-cfb" #define NID_des_ede3_cfb64 61 #define SN_des_ede_ofb64 "DES-EDE-OFB" #define LN_des_ede_ofb64 "des-ede-ofb" #define NID_des_ede_ofb64 62 #define SN_des_ede3_ofb64 "DES-EDE3-OFB" #define LN_des_ede3_ofb64 "des-ede3-ofb" #define NID_des_ede3_ofb64 63 #define SN_desx_cbc "DESX-CBC" #define LN_desx_cbc "desx-cbc" #define NID_desx_cbc 80 #define SN_sha "SHA" #define LN_sha "sha" #define NID_sha 41 #define OBJ_sha OBJ_algorithm,18L #define SN_sha1 "SHA1" #define LN_sha1 "sha1" #define NID_sha1 64 #define OBJ_sha1 OBJ_algorithm,26L #define SN_dsaWithSHA1_2 "DSA-SHA1-old" #define LN_dsaWithSHA1_2 "dsaWithSHA1-old" #define NID_dsaWithSHA1_2 70 #define OBJ_dsaWithSHA1_2 OBJ_algorithm,27L #define SN_sha1WithRSA "RSA-SHA1-2" #define LN_sha1WithRSA "sha1WithRSA" #define NID_sha1WithRSA 115 #define OBJ_sha1WithRSA OBJ_algorithm,29L #define SN_ripemd160 "RIPEMD160" #define LN_ripemd160 "ripemd160" #define NID_ripemd160 117 #define OBJ_ripemd160 1L,3L,36L,3L,2L,1L #define SN_ripemd160WithRSA "RSA-RIPEMD160" #define LN_ripemd160WithRSA "ripemd160WithRSA" #define NID_ripemd160WithRSA 119 #define OBJ_ripemd160WithRSA 1L,3L,36L,3L,3L,1L,2L #define SN_sxnet "SXNetID" #define LN_sxnet "Strong Extranet ID" #define NID_sxnet 143 #define OBJ_sxnet 1L,3L,101L,1L,4L,1L #define SN_X500 "X500" #define LN_X500 "directory services (X.500)" #define NID_X500 11 #define OBJ_X500 2L,5L #define SN_X509 "X509" #define NID_X509 12 #define OBJ_X509 OBJ_X500,4L #define SN_commonName "CN" #define LN_commonName "commonName" #define NID_commonName 13 #define OBJ_commonName OBJ_X509,3L #define SN_surname "SN" #define LN_surname "surname" #define NID_surname 100 #define OBJ_surname OBJ_X509,4L #define LN_serialNumber "serialNumber" #define NID_serialNumber 105 #define OBJ_serialNumber OBJ_X509,5L #define SN_countryName "C" #define LN_countryName "countryName" #define NID_countryName 14 #define OBJ_countryName OBJ_X509,6L #define SN_localityName "L" #define LN_localityName "localityName" #define NID_localityName 15 #define OBJ_localityName OBJ_X509,7L #define SN_stateOrProvinceName "ST" #define LN_stateOrProvinceName "stateOrProvinceName" #define NID_stateOrProvinceName 16 #define OBJ_stateOrProvinceName OBJ_X509,8L #define SN_streetAddress "street" #define LN_streetAddress "streetAddress" #define NID_streetAddress 660 #define OBJ_streetAddress OBJ_X509,9L #define SN_organizationName "O" #define LN_organizationName "organizationName" #define NID_organizationName 17 #define OBJ_organizationName OBJ_X509,10L #define SN_organizationalUnitName "OU" #define LN_organizationalUnitName "organizationalUnitName" #define NID_organizationalUnitName 18 #define OBJ_organizationalUnitName OBJ_X509,11L #define SN_title "title" #define LN_title "title" #define NID_title 106 #define OBJ_title OBJ_X509,12L #define LN_description "description" #define NID_description 107 #define OBJ_description OBJ_X509,13L #define LN_searchGuide "searchGuide" #define NID_searchGuide 859 #define OBJ_searchGuide OBJ_X509,14L #define LN_businessCategory "businessCategory" #define NID_businessCategory 860 #define OBJ_businessCategory OBJ_X509,15L #define LN_postalAddress "postalAddress" #define NID_postalAddress 861 #define OBJ_postalAddress OBJ_X509,16L #define LN_postalCode "postalCode" #define NID_postalCode 661 #define OBJ_postalCode OBJ_X509,17L #define LN_postOfficeBox "postOfficeBox" #define NID_postOfficeBox 862 #define OBJ_postOfficeBox OBJ_X509,18L #define LN_physicalDeliveryOfficeName "physicalDeliveryOfficeName" #define NID_physicalDeliveryOfficeName 863 #define OBJ_physicalDeliveryOfficeName OBJ_X509,19L #define LN_telephoneNumber "telephoneNumber" #define NID_telephoneNumber 864 #define OBJ_telephoneNumber OBJ_X509,20L #define LN_telexNumber "telexNumber" #define NID_telexNumber 865 #define OBJ_telexNumber OBJ_X509,21L #define LN_teletexTerminalIdentifier "teletexTerminalIdentifier" #define NID_teletexTerminalIdentifier 866 #define OBJ_teletexTerminalIdentifier OBJ_X509,22L #define LN_facsimileTelephoneNumber "facsimileTelephoneNumber" #define NID_facsimileTelephoneNumber 867 #define OBJ_facsimileTelephoneNumber OBJ_X509,23L #define LN_x121Address "x121Address" #define NID_x121Address 868 #define OBJ_x121Address OBJ_X509,24L #define LN_internationaliSDNNumber "internationaliSDNNumber" #define NID_internationaliSDNNumber 869 #define OBJ_internationaliSDNNumber OBJ_X509,25L #define LN_registeredAddress "registeredAddress" #define NID_registeredAddress 870 #define OBJ_registeredAddress OBJ_X509,26L #define LN_destinationIndicator "destinationIndicator" #define NID_destinationIndicator 871 #define OBJ_destinationIndicator OBJ_X509,27L #define LN_preferredDeliveryMethod "preferredDeliveryMethod" #define NID_preferredDeliveryMethod 872 #define OBJ_preferredDeliveryMethod OBJ_X509,28L #define LN_presentationAddress "presentationAddress" #define NID_presentationAddress 873 #define OBJ_presentationAddress OBJ_X509,29L #define LN_supportedApplicationContext "supportedApplicationContext" #define NID_supportedApplicationContext 874 #define OBJ_supportedApplicationContext OBJ_X509,30L #define SN_member "member" #define NID_member 875 #define OBJ_member OBJ_X509,31L #define SN_owner "owner" #define NID_owner 876 #define OBJ_owner OBJ_X509,32L #define LN_roleOccupant "roleOccupant" #define NID_roleOccupant 877 #define OBJ_roleOccupant OBJ_X509,33L #define SN_seeAlso "seeAlso" #define NID_seeAlso 878 #define OBJ_seeAlso OBJ_X509,34L #define LN_userPassword "userPassword" #define NID_userPassword 879 #define OBJ_userPassword OBJ_X509,35L #define LN_userCertificate "userCertificate" #define NID_userCertificate 880 #define OBJ_userCertificate OBJ_X509,36L #define LN_cACertificate "cACertificate" #define NID_cACertificate 881 #define OBJ_cACertificate OBJ_X509,37L #define LN_authorityRevocationList "authorityRevocationList" #define NID_authorityRevocationList 882 #define OBJ_authorityRevocationList OBJ_X509,38L #define LN_certificateRevocationList "certificateRevocationList" #define NID_certificateRevocationList 883 #define OBJ_certificateRevocationList OBJ_X509,39L #define LN_crossCertificatePair "crossCertificatePair" #define NID_crossCertificatePair 884 #define OBJ_crossCertificatePair OBJ_X509,40L #define SN_name "name" #define LN_name "name" #define NID_name 173 #define OBJ_name OBJ_X509,41L #define SN_givenName "GN" #define LN_givenName "givenName" #define NID_givenName 99 #define OBJ_givenName OBJ_X509,42L #define SN_initials "initials" #define LN_initials "initials" #define NID_initials 101 #define OBJ_initials OBJ_X509,43L #define LN_generationQualifier "generationQualifier" #define NID_generationQualifier 509 #define OBJ_generationQualifier OBJ_X509,44L #define LN_x500UniqueIdentifier "x500UniqueIdentifier" #define NID_x500UniqueIdentifier 503 #define OBJ_x500UniqueIdentifier OBJ_X509,45L #define SN_dnQualifier "dnQualifier" #define LN_dnQualifier "dnQualifier" #define NID_dnQualifier 174 #define OBJ_dnQualifier OBJ_X509,46L #define LN_enhancedSearchGuide "enhancedSearchGuide" #define NID_enhancedSearchGuide 885 #define OBJ_enhancedSearchGuide OBJ_X509,47L #define LN_protocolInformation "protocolInformation" #define NID_protocolInformation 886 #define OBJ_protocolInformation OBJ_X509,48L #define LN_distinguishedName "distinguishedName" #define NID_distinguishedName 887 #define OBJ_distinguishedName OBJ_X509,49L #define LN_uniqueMember "uniqueMember" #define NID_uniqueMember 888 #define OBJ_uniqueMember OBJ_X509,50L #define LN_houseIdentifier "houseIdentifier" #define NID_houseIdentifier 889 #define OBJ_houseIdentifier OBJ_X509,51L #define LN_supportedAlgorithms "supportedAlgorithms" #define NID_supportedAlgorithms 890 #define OBJ_supportedAlgorithms OBJ_X509,52L #define LN_deltaRevocationList "deltaRevocationList" #define NID_deltaRevocationList 891 #define OBJ_deltaRevocationList OBJ_X509,53L #define SN_dmdName "dmdName" #define NID_dmdName 892 #define OBJ_dmdName OBJ_X509,54L #define LN_pseudonym "pseudonym" #define NID_pseudonym 510 #define OBJ_pseudonym OBJ_X509,65L #define SN_role "role" #define LN_role "role" #define NID_role 400 #define OBJ_role OBJ_X509,72L #define SN_X500algorithms "X500algorithms" #define LN_X500algorithms "directory services - algorithms" #define NID_X500algorithms 378 #define OBJ_X500algorithms OBJ_X500,8L #define SN_rsa "RSA" #define LN_rsa "rsa" #define NID_rsa 19 #define OBJ_rsa OBJ_X500algorithms,1L,1L #define SN_mdc2WithRSA "RSA-MDC2" #define LN_mdc2WithRSA "mdc2WithRSA" #define NID_mdc2WithRSA 96 #define OBJ_mdc2WithRSA OBJ_X500algorithms,3L,100L #define SN_mdc2 "MDC2" #define LN_mdc2 "mdc2" #define NID_mdc2 95 #define OBJ_mdc2 OBJ_X500algorithms,3L,101L #define SN_id_ce "id-ce" #define NID_id_ce 81 #define OBJ_id_ce OBJ_X500,29L #define SN_subject_directory_attributes "subjectDirectoryAttributes" #define LN_subject_directory_attributes "X509v3 Subject Directory Attributes" #define NID_subject_directory_attributes 769 #define OBJ_subject_directory_attributes OBJ_id_ce,9L #define SN_subject_key_identifier "subjectKeyIdentifier" #define LN_subject_key_identifier "X509v3 Subject Key Identifier" #define NID_subject_key_identifier 82 #define OBJ_subject_key_identifier OBJ_id_ce,14L #define SN_key_usage "keyUsage" #define LN_key_usage "X509v3 Key Usage" #define NID_key_usage 83 #define OBJ_key_usage OBJ_id_ce,15L #define SN_private_key_usage_period "privateKeyUsagePeriod" #define LN_private_key_usage_period "X509v3 Private Key Usage Period" #define NID_private_key_usage_period 84 #define OBJ_private_key_usage_period OBJ_id_ce,16L #define SN_subject_alt_name "subjectAltName" #define LN_subject_alt_name "X509v3 Subject Alternative Name" #define NID_subject_alt_name 85 #define OBJ_subject_alt_name OBJ_id_ce,17L #define SN_issuer_alt_name "issuerAltName" #define LN_issuer_alt_name "X509v3 Issuer Alternative Name" #define NID_issuer_alt_name 86 #define OBJ_issuer_alt_name OBJ_id_ce,18L #define SN_basic_constraints "basicConstraints" #define LN_basic_constraints "X509v3 Basic Constraints" #define NID_basic_constraints 87 #define OBJ_basic_constraints OBJ_id_ce,19L #define SN_crl_number "crlNumber" #define LN_crl_number "X509v3 CRL Number" #define NID_crl_number 88 #define OBJ_crl_number OBJ_id_ce,20L #define SN_crl_reason "CRLReason" #define LN_crl_reason "X509v3 CRL Reason Code" #define NID_crl_reason 141 #define OBJ_crl_reason OBJ_id_ce,21L #define SN_invalidity_date "invalidityDate" #define LN_invalidity_date "Invalidity Date" #define NID_invalidity_date 142 #define OBJ_invalidity_date OBJ_id_ce,24L #define SN_delta_crl "deltaCRL" #define LN_delta_crl "X509v3 Delta CRL Indicator" #define NID_delta_crl 140 #define OBJ_delta_crl OBJ_id_ce,27L #define SN_issuing_distribution_point "issuingDistributionPoint" #define LN_issuing_distribution_point "X509v3 Issuing Distrubution Point" #define NID_issuing_distribution_point 770 #define OBJ_issuing_distribution_point OBJ_id_ce,28L #define SN_certificate_issuer "certificateIssuer" #define LN_certificate_issuer "X509v3 Certificate Issuer" #define NID_certificate_issuer 771 #define OBJ_certificate_issuer OBJ_id_ce,29L #define SN_name_constraints "nameConstraints" #define LN_name_constraints "X509v3 Name Constraints" #define NID_name_constraints 666 #define OBJ_name_constraints OBJ_id_ce,30L #define SN_crl_distribution_points "crlDistributionPoints" #define LN_crl_distribution_points "X509v3 CRL Distribution Points" #define NID_crl_distribution_points 103 #define OBJ_crl_distribution_points OBJ_id_ce,31L #define SN_certificate_policies "certificatePolicies" #define LN_certificate_policies "X509v3 Certificate Policies" #define NID_certificate_policies 89 #define OBJ_certificate_policies OBJ_id_ce,32L #define SN_any_policy "anyPolicy" #define LN_any_policy "X509v3 Any Policy" #define NID_any_policy 746 #define OBJ_any_policy OBJ_certificate_policies,0L #define SN_policy_mappings "policyMappings" #define LN_policy_mappings "X509v3 Policy Mappings" #define NID_policy_mappings 747 #define OBJ_policy_mappings OBJ_id_ce,33L #define SN_authority_key_identifier "authorityKeyIdentifier" #define LN_authority_key_identifier "X509v3 Authority Key Identifier" #define NID_authority_key_identifier 90 #define OBJ_authority_key_identifier OBJ_id_ce,35L #define SN_policy_constraints "policyConstraints" #define LN_policy_constraints "X509v3 Policy Constraints" #define NID_policy_constraints 401 #define OBJ_policy_constraints OBJ_id_ce,36L #define SN_ext_key_usage "extendedKeyUsage" #define LN_ext_key_usage "X509v3 Extended Key Usage" #define NID_ext_key_usage 126 #define OBJ_ext_key_usage OBJ_id_ce,37L #define SN_freshest_crl "freshestCRL" #define LN_freshest_crl "X509v3 Freshest CRL" #define NID_freshest_crl 857 #define OBJ_freshest_crl OBJ_id_ce,46L #define SN_inhibit_any_policy "inhibitAnyPolicy" #define LN_inhibit_any_policy "X509v3 Inhibit Any Policy" #define NID_inhibit_any_policy 748 #define OBJ_inhibit_any_policy OBJ_id_ce,54L #define SN_target_information "targetInformation" #define LN_target_information "X509v3 AC Targeting" #define NID_target_information 402 #define OBJ_target_information OBJ_id_ce,55L #define SN_no_rev_avail "noRevAvail" #define LN_no_rev_avail "X509v3 No Revocation Available" #define NID_no_rev_avail 403 #define OBJ_no_rev_avail OBJ_id_ce,56L #define SN_anyExtendedKeyUsage "anyExtendedKeyUsage" #define LN_anyExtendedKeyUsage "Any Extended Key Usage" #define NID_anyExtendedKeyUsage 910 #define OBJ_anyExtendedKeyUsage OBJ_ext_key_usage,0L #define SN_netscape "Netscape" #define LN_netscape "Netscape Communications Corp." #define NID_netscape 57 #define OBJ_netscape 2L,16L,840L,1L,113730L #define SN_netscape_cert_extension "nsCertExt" #define LN_netscape_cert_extension "Netscape Certificate Extension" #define NID_netscape_cert_extension 58 #define OBJ_netscape_cert_extension OBJ_netscape,1L #define SN_netscape_data_type "nsDataType" #define LN_netscape_data_type "Netscape Data Type" #define NID_netscape_data_type 59 #define OBJ_netscape_data_type OBJ_netscape,2L #define SN_netscape_cert_type "nsCertType" #define LN_netscape_cert_type "Netscape Cert Type" #define NID_netscape_cert_type 71 #define OBJ_netscape_cert_type OBJ_netscape_cert_extension,1L #define SN_netscape_base_url "nsBaseUrl" #define LN_netscape_base_url "Netscape Base Url" #define NID_netscape_base_url 72 #define OBJ_netscape_base_url OBJ_netscape_cert_extension,2L #define SN_netscape_revocation_url "nsRevocationUrl" #define LN_netscape_revocation_url "Netscape Revocation Url" #define NID_netscape_revocation_url 73 #define OBJ_netscape_revocation_url OBJ_netscape_cert_extension,3L #define SN_netscape_ca_revocation_url "nsCaRevocationUrl" #define LN_netscape_ca_revocation_url "Netscape CA Revocation Url" #define NID_netscape_ca_revocation_url 74 #define OBJ_netscape_ca_revocation_url OBJ_netscape_cert_extension,4L #define SN_netscape_renewal_url "nsRenewalUrl" #define LN_netscape_renewal_url "Netscape Renewal Url" #define NID_netscape_renewal_url 75 #define OBJ_netscape_renewal_url OBJ_netscape_cert_extension,7L #define SN_netscape_ca_policy_url "nsCaPolicyUrl" #define LN_netscape_ca_policy_url "Netscape CA Policy Url" #define NID_netscape_ca_policy_url 76 #define OBJ_netscape_ca_policy_url OBJ_netscape_cert_extension,8L #define SN_netscape_ssl_server_name "nsSslServerName" #define LN_netscape_ssl_server_name "Netscape SSL Server Name" #define NID_netscape_ssl_server_name 77 #define OBJ_netscape_ssl_server_name OBJ_netscape_cert_extension,12L #define SN_netscape_comment "nsComment" #define LN_netscape_comment "Netscape Comment" #define NID_netscape_comment 78 #define OBJ_netscape_comment OBJ_netscape_cert_extension,13L #define SN_netscape_cert_sequence "nsCertSequence" #define LN_netscape_cert_sequence "Netscape Certificate Sequence" #define NID_netscape_cert_sequence 79 #define OBJ_netscape_cert_sequence OBJ_netscape_data_type,5L #define SN_ns_sgc "nsSGC" #define LN_ns_sgc "Netscape Server Gated Crypto" #define NID_ns_sgc 139 #define OBJ_ns_sgc OBJ_netscape,4L,1L #define SN_org "ORG" #define LN_org "org" #define NID_org 379 #define OBJ_org OBJ_iso,3L #define SN_dod "DOD" #define LN_dod "dod" #define NID_dod 380 #define OBJ_dod OBJ_org,6L #define SN_iana "IANA" #define LN_iana "iana" #define NID_iana 381 #define OBJ_iana OBJ_dod,1L #define OBJ_internet OBJ_iana #define SN_Directory "directory" #define LN_Directory "Directory" #define NID_Directory 382 #define OBJ_Directory OBJ_internet,1L #define SN_Management "mgmt" #define LN_Management "Management" #define NID_Management 383 #define OBJ_Management OBJ_internet,2L #define SN_Experimental "experimental" #define LN_Experimental "Experimental" #define NID_Experimental 384 #define OBJ_Experimental OBJ_internet,3L #define SN_Private "private" #define LN_Private "Private" #define NID_Private 385 #define OBJ_Private OBJ_internet,4L #define SN_Security "security" #define LN_Security "Security" #define NID_Security 386 #define OBJ_Security OBJ_internet,5L #define SN_SNMPv2 "snmpv2" #define LN_SNMPv2 "SNMPv2" #define NID_SNMPv2 387 #define OBJ_SNMPv2 OBJ_internet,6L #define LN_Mail "Mail" #define NID_Mail 388 #define OBJ_Mail OBJ_internet,7L #define SN_Enterprises "enterprises" #define LN_Enterprises "Enterprises" #define NID_Enterprises 389 #define OBJ_Enterprises OBJ_Private,1L #define SN_dcObject "dcobject" #define LN_dcObject "dcObject" #define NID_dcObject 390 #define OBJ_dcObject OBJ_Enterprises,1466L,344L #define SN_mime_mhs "mime-mhs" #define LN_mime_mhs "MIME MHS" #define NID_mime_mhs 504 #define OBJ_mime_mhs OBJ_Mail,1L #define SN_mime_mhs_headings "mime-mhs-headings" #define LN_mime_mhs_headings "mime-mhs-headings" #define NID_mime_mhs_headings 505 #define OBJ_mime_mhs_headings OBJ_mime_mhs,1L #define SN_mime_mhs_bodies "mime-mhs-bodies" #define LN_mime_mhs_bodies "mime-mhs-bodies" #define NID_mime_mhs_bodies 506 #define OBJ_mime_mhs_bodies OBJ_mime_mhs,2L #define SN_id_hex_partial_message "id-hex-partial-message" #define LN_id_hex_partial_message "id-hex-partial-message" #define NID_id_hex_partial_message 507 #define OBJ_id_hex_partial_message OBJ_mime_mhs_headings,1L #define SN_id_hex_multipart_message "id-hex-multipart-message" #define LN_id_hex_multipart_message "id-hex-multipart-message" #define NID_id_hex_multipart_message 508 #define OBJ_id_hex_multipart_message OBJ_mime_mhs_headings,2L #define SN_rle_compression "RLE" #define LN_rle_compression "run length compression" #define NID_rle_compression 124 #define OBJ_rle_compression 1L,1L,1L,1L,666L,1L #define SN_zlib_compression "ZLIB" #define LN_zlib_compression "zlib compression" #define NID_zlib_compression 125 #define OBJ_zlib_compression OBJ_id_smime_alg,8L #define OBJ_csor 2L,16L,840L,1L,101L,3L #define OBJ_nistAlgorithms OBJ_csor,4L #define OBJ_aes OBJ_nistAlgorithms,1L #define SN_aes_128_ecb "AES-128-ECB" #define LN_aes_128_ecb "aes-128-ecb" #define NID_aes_128_ecb 418 #define OBJ_aes_128_ecb OBJ_aes,1L #define SN_aes_128_cbc "AES-128-CBC" #define LN_aes_128_cbc "aes-128-cbc" #define NID_aes_128_cbc 419 #define OBJ_aes_128_cbc OBJ_aes,2L #define SN_aes_128_ofb128 "AES-128-OFB" #define LN_aes_128_ofb128 "aes-128-ofb" #define NID_aes_128_ofb128 420 #define OBJ_aes_128_ofb128 OBJ_aes,3L #define SN_aes_128_cfb128 "AES-128-CFB" #define LN_aes_128_cfb128 "aes-128-cfb" #define NID_aes_128_cfb128 421 #define OBJ_aes_128_cfb128 OBJ_aes,4L #define SN_id_aes128_wrap "id-aes128-wrap" #define NID_id_aes128_wrap 788 #define OBJ_id_aes128_wrap OBJ_aes,5L #define SN_aes_128_gcm "id-aes128-GCM" #define LN_aes_128_gcm "aes-128-gcm" #define NID_aes_128_gcm 895 #define OBJ_aes_128_gcm OBJ_aes,6L #define SN_aes_128_ccm "id-aes128-CCM" #define LN_aes_128_ccm "aes-128-ccm" #define NID_aes_128_ccm 896 #define OBJ_aes_128_ccm OBJ_aes,7L #define SN_id_aes128_wrap_pad "id-aes128-wrap-pad" #define NID_id_aes128_wrap_pad 897 #define OBJ_id_aes128_wrap_pad OBJ_aes,8L #define SN_aes_192_ecb "AES-192-ECB" #define LN_aes_192_ecb "aes-192-ecb" #define NID_aes_192_ecb 422 #define OBJ_aes_192_ecb OBJ_aes,21L #define SN_aes_192_cbc "AES-192-CBC" #define LN_aes_192_cbc "aes-192-cbc" #define NID_aes_192_cbc 423 #define OBJ_aes_192_cbc OBJ_aes,22L #define SN_aes_192_ofb128 "AES-192-OFB" #define LN_aes_192_ofb128 "aes-192-ofb" #define NID_aes_192_ofb128 424 #define OBJ_aes_192_ofb128 OBJ_aes,23L #define SN_aes_192_cfb128 "AES-192-CFB" #define LN_aes_192_cfb128 "aes-192-cfb" #define NID_aes_192_cfb128 425 #define OBJ_aes_192_cfb128 OBJ_aes,24L #define SN_id_aes192_wrap "id-aes192-wrap" #define NID_id_aes192_wrap 789 #define OBJ_id_aes192_wrap OBJ_aes,25L #define SN_aes_192_gcm "id-aes192-GCM" #define LN_aes_192_gcm "aes-192-gcm" #define NID_aes_192_gcm 898 #define OBJ_aes_192_gcm OBJ_aes,26L #define SN_aes_192_ccm "id-aes192-CCM" #define LN_aes_192_ccm "aes-192-ccm" #define NID_aes_192_ccm 899 #define OBJ_aes_192_ccm OBJ_aes,27L #define SN_id_aes192_wrap_pad "id-aes192-wrap-pad" #define NID_id_aes192_wrap_pad 900 #define OBJ_id_aes192_wrap_pad OBJ_aes,28L #define SN_aes_256_ecb "AES-256-ECB" #define LN_aes_256_ecb "aes-256-ecb" #define NID_aes_256_ecb 426 #define OBJ_aes_256_ecb OBJ_aes,41L #define SN_aes_256_cbc "AES-256-CBC" #define LN_aes_256_cbc "aes-256-cbc" #define NID_aes_256_cbc 427 #define OBJ_aes_256_cbc OBJ_aes,42L #define SN_aes_256_ofb128 "AES-256-OFB" #define LN_aes_256_ofb128 "aes-256-ofb" #define NID_aes_256_ofb128 428 #define OBJ_aes_256_ofb128 OBJ_aes,43L #define SN_aes_256_cfb128 "AES-256-CFB" #define LN_aes_256_cfb128 "aes-256-cfb" #define NID_aes_256_cfb128 429 #define OBJ_aes_256_cfb128 OBJ_aes,44L #define SN_id_aes256_wrap "id-aes256-wrap" #define NID_id_aes256_wrap 790 #define OBJ_id_aes256_wrap OBJ_aes,45L #define SN_aes_256_gcm "id-aes256-GCM" #define LN_aes_256_gcm "aes-256-gcm" #define NID_aes_256_gcm 901 #define OBJ_aes_256_gcm OBJ_aes,46L #define SN_aes_256_ccm "id-aes256-CCM" #define LN_aes_256_ccm "aes-256-ccm" #define NID_aes_256_ccm 902 #define OBJ_aes_256_ccm OBJ_aes,47L #define SN_id_aes256_wrap_pad "id-aes256-wrap-pad" #define NID_id_aes256_wrap_pad 903 #define OBJ_id_aes256_wrap_pad OBJ_aes,48L #define SN_aes_128_cfb1 "AES-128-CFB1" #define LN_aes_128_cfb1 "aes-128-cfb1" #define NID_aes_128_cfb1 650 #define SN_aes_192_cfb1 "AES-192-CFB1" #define LN_aes_192_cfb1 "aes-192-cfb1" #define NID_aes_192_cfb1 651 #define SN_aes_256_cfb1 "AES-256-CFB1" #define LN_aes_256_cfb1 "aes-256-cfb1" #define NID_aes_256_cfb1 652 #define SN_aes_128_cfb8 "AES-128-CFB8" #define LN_aes_128_cfb8 "aes-128-cfb8" #define NID_aes_128_cfb8 653 #define SN_aes_192_cfb8 "AES-192-CFB8" #define LN_aes_192_cfb8 "aes-192-cfb8" #define NID_aes_192_cfb8 654 #define SN_aes_256_cfb8 "AES-256-CFB8" #define LN_aes_256_cfb8 "aes-256-cfb8" #define NID_aes_256_cfb8 655 #define SN_aes_128_ctr "AES-128-CTR" #define LN_aes_128_ctr "aes-128-ctr" #define NID_aes_128_ctr 904 #define SN_aes_192_ctr "AES-192-CTR" #define LN_aes_192_ctr "aes-192-ctr" #define NID_aes_192_ctr 905 #define SN_aes_256_ctr "AES-256-CTR" #define LN_aes_256_ctr "aes-256-ctr" #define NID_aes_256_ctr 906 #define SN_aes_128_xts "AES-128-XTS" #define LN_aes_128_xts "aes-128-xts" #define NID_aes_128_xts 913 #define SN_aes_256_xts "AES-256-XTS" #define LN_aes_256_xts "aes-256-xts" #define NID_aes_256_xts 914 #define SN_des_cfb1 "DES-CFB1" #define LN_des_cfb1 "des-cfb1" #define NID_des_cfb1 656 #define SN_des_cfb8 "DES-CFB8" #define LN_des_cfb8 "des-cfb8" #define NID_des_cfb8 657 #define SN_des_ede3_cfb1 "DES-EDE3-CFB1" #define LN_des_ede3_cfb1 "des-ede3-cfb1" #define NID_des_ede3_cfb1 658 #define SN_des_ede3_cfb8 "DES-EDE3-CFB8" #define LN_des_ede3_cfb8 "des-ede3-cfb8" #define NID_des_ede3_cfb8 659 #define OBJ_nist_hashalgs OBJ_nistAlgorithms,2L #define SN_sha256 "SHA256" #define LN_sha256 "sha256" #define NID_sha256 672 #define OBJ_sha256 OBJ_nist_hashalgs,1L #define SN_sha384 "SHA384" #define LN_sha384 "sha384" #define NID_sha384 673 #define OBJ_sha384 OBJ_nist_hashalgs,2L #define SN_sha512 "SHA512" #define LN_sha512 "sha512" #define NID_sha512 674 #define OBJ_sha512 OBJ_nist_hashalgs,3L #define SN_sha224 "SHA224" #define LN_sha224 "sha224" #define NID_sha224 675 #define OBJ_sha224 OBJ_nist_hashalgs,4L #define OBJ_dsa_with_sha2 OBJ_nistAlgorithms,3L #define SN_dsa_with_SHA224 "dsa_with_SHA224" #define NID_dsa_with_SHA224 802 #define OBJ_dsa_with_SHA224 OBJ_dsa_with_sha2,1L #define SN_dsa_with_SHA256 "dsa_with_SHA256" #define NID_dsa_with_SHA256 803 #define OBJ_dsa_with_SHA256 OBJ_dsa_with_sha2,2L #define SN_hold_instruction_code "holdInstructionCode" #define LN_hold_instruction_code "Hold Instruction Code" #define NID_hold_instruction_code 430 #define OBJ_hold_instruction_code OBJ_id_ce,23L #define OBJ_holdInstruction OBJ_X9_57,2L #define SN_hold_instruction_none "holdInstructionNone" #define LN_hold_instruction_none "Hold Instruction None" #define NID_hold_instruction_none 431 #define OBJ_hold_instruction_none OBJ_holdInstruction,1L #define SN_hold_instruction_call_issuer "holdInstructionCallIssuer" #define LN_hold_instruction_call_issuer "Hold Instruction Call Issuer" #define NID_hold_instruction_call_issuer 432 #define OBJ_hold_instruction_call_issuer OBJ_holdInstruction,2L #define SN_hold_instruction_reject "holdInstructionReject" #define LN_hold_instruction_reject "Hold Instruction Reject" #define NID_hold_instruction_reject 433 #define OBJ_hold_instruction_reject OBJ_holdInstruction,3L #define SN_data "data" #define NID_data 434 #define OBJ_data OBJ_itu_t,9L #define SN_pss "pss" #define NID_pss 435 #define OBJ_pss OBJ_data,2342L #define SN_ucl "ucl" #define NID_ucl 436 #define OBJ_ucl OBJ_pss,19200300L #define SN_pilot "pilot" #define NID_pilot 437 #define OBJ_pilot OBJ_ucl,100L #define LN_pilotAttributeType "pilotAttributeType" #define NID_pilotAttributeType 438 #define OBJ_pilotAttributeType OBJ_pilot,1L #define LN_pilotAttributeSyntax "pilotAttributeSyntax" #define NID_pilotAttributeSyntax 439 #define OBJ_pilotAttributeSyntax OBJ_pilot,3L #define LN_pilotObjectClass "pilotObjectClass" #define NID_pilotObjectClass 440 #define OBJ_pilotObjectClass OBJ_pilot,4L #define LN_pilotGroups "pilotGroups" #define NID_pilotGroups 441 #define OBJ_pilotGroups OBJ_pilot,10L #define LN_iA5StringSyntax "iA5StringSyntax" #define NID_iA5StringSyntax 442 #define OBJ_iA5StringSyntax OBJ_pilotAttributeSyntax,4L #define LN_caseIgnoreIA5StringSyntax "caseIgnoreIA5StringSyntax" #define NID_caseIgnoreIA5StringSyntax 443 #define OBJ_caseIgnoreIA5StringSyntax OBJ_pilotAttributeSyntax,5L #define LN_pilotObject "pilotObject" #define NID_pilotObject 444 #define OBJ_pilotObject OBJ_pilotObjectClass,3L #define LN_pilotPerson "pilotPerson" #define NID_pilotPerson 445 #define OBJ_pilotPerson OBJ_pilotObjectClass,4L #define SN_account "account" #define NID_account 446 #define OBJ_account OBJ_pilotObjectClass,5L #define SN_document "document" #define NID_document 447 #define OBJ_document OBJ_pilotObjectClass,6L #define SN_room "room" #define NID_room 448 #define OBJ_room OBJ_pilotObjectClass,7L #define LN_documentSeries "documentSeries" #define NID_documentSeries 449 #define OBJ_documentSeries OBJ_pilotObjectClass,9L #define SN_Domain "domain" #define LN_Domain "Domain" #define NID_Domain 392 #define OBJ_Domain OBJ_pilotObjectClass,13L #define LN_rFC822localPart "rFC822localPart" #define NID_rFC822localPart 450 #define OBJ_rFC822localPart OBJ_pilotObjectClass,14L #define LN_dNSDomain "dNSDomain" #define NID_dNSDomain 451 #define OBJ_dNSDomain OBJ_pilotObjectClass,15L #define LN_domainRelatedObject "domainRelatedObject" #define NID_domainRelatedObject 452 #define OBJ_domainRelatedObject OBJ_pilotObjectClass,17L #define LN_friendlyCountry "friendlyCountry" #define NID_friendlyCountry 453 #define OBJ_friendlyCountry OBJ_pilotObjectClass,18L #define LN_simpleSecurityObject "simpleSecurityObject" #define NID_simpleSecurityObject 454 #define OBJ_simpleSecurityObject OBJ_pilotObjectClass,19L #define LN_pilotOrganization "pilotOrganization" #define NID_pilotOrganization 455 #define OBJ_pilotOrganization OBJ_pilotObjectClass,20L #define LN_pilotDSA "pilotDSA" #define NID_pilotDSA 456 #define OBJ_pilotDSA OBJ_pilotObjectClass,21L #define LN_qualityLabelledData "qualityLabelledData" #define NID_qualityLabelledData 457 #define OBJ_qualityLabelledData OBJ_pilotObjectClass,22L #define SN_userId "UID" #define LN_userId "userId" #define NID_userId 458 #define OBJ_userId OBJ_pilotAttributeType,1L #define LN_textEncodedORAddress "textEncodedORAddress" #define NID_textEncodedORAddress 459 #define OBJ_textEncodedORAddress OBJ_pilotAttributeType,2L #define SN_rfc822Mailbox "mail" #define LN_rfc822Mailbox "rfc822Mailbox" #define NID_rfc822Mailbox 460 #define OBJ_rfc822Mailbox OBJ_pilotAttributeType,3L #define SN_info "info" #define NID_info 461 #define OBJ_info OBJ_pilotAttributeType,4L #define LN_favouriteDrink "favouriteDrink" #define NID_favouriteDrink 462 #define OBJ_favouriteDrink OBJ_pilotAttributeType,5L #define LN_roomNumber "roomNumber" #define NID_roomNumber 463 #define OBJ_roomNumber OBJ_pilotAttributeType,6L #define SN_photo "photo" #define NID_photo 464 #define OBJ_photo OBJ_pilotAttributeType,7L #define LN_userClass "userClass" #define NID_userClass 465 #define OBJ_userClass OBJ_pilotAttributeType,8L #define SN_host "host" #define NID_host 466 #define OBJ_host OBJ_pilotAttributeType,9L #define SN_manager "manager" #define NID_manager 467 #define OBJ_manager OBJ_pilotAttributeType,10L #define LN_documentIdentifier "documentIdentifier" #define NID_documentIdentifier 468 #define OBJ_documentIdentifier OBJ_pilotAttributeType,11L #define LN_documentTitle "documentTitle" #define NID_documentTitle 469 #define OBJ_documentTitle OBJ_pilotAttributeType,12L #define LN_documentVersion "documentVersion" #define NID_documentVersion 470 #define OBJ_documentVersion OBJ_pilotAttributeType,13L #define LN_documentAuthor "documentAuthor" #define NID_documentAuthor 471 #define OBJ_documentAuthor OBJ_pilotAttributeType,14L #define LN_documentLocation "documentLocation" #define NID_documentLocation 472 #define OBJ_documentLocation OBJ_pilotAttributeType,15L #define LN_homeTelephoneNumber "homeTelephoneNumber" #define NID_homeTelephoneNumber 473 #define OBJ_homeTelephoneNumber OBJ_pilotAttributeType,20L #define SN_secretary "secretary" #define NID_secretary 474 #define OBJ_secretary OBJ_pilotAttributeType,21L #define LN_otherMailbox "otherMailbox" #define NID_otherMailbox 475 #define OBJ_otherMailbox OBJ_pilotAttributeType,22L #define LN_lastModifiedTime "lastModifiedTime" #define NID_lastModifiedTime 476 #define OBJ_lastModifiedTime OBJ_pilotAttributeType,23L #define LN_lastModifiedBy "lastModifiedBy" #define NID_lastModifiedBy 477 #define OBJ_lastModifiedBy OBJ_pilotAttributeType,24L #define SN_domainComponent "DC" #define LN_domainComponent "domainComponent" #define NID_domainComponent 391 #define OBJ_domainComponent OBJ_pilotAttributeType,25L #define LN_aRecord "aRecord" #define NID_aRecord 478 #define OBJ_aRecord OBJ_pilotAttributeType,26L #define LN_pilotAttributeType27 "pilotAttributeType27" #define NID_pilotAttributeType27 479 #define OBJ_pilotAttributeType27 OBJ_pilotAttributeType,27L #define LN_mXRecord "mXRecord" #define NID_mXRecord 480 #define OBJ_mXRecord OBJ_pilotAttributeType,28L #define LN_nSRecord "nSRecord" #define NID_nSRecord 481 #define OBJ_nSRecord OBJ_pilotAttributeType,29L #define LN_sOARecord "sOARecord" #define NID_sOARecord 482 #define OBJ_sOARecord OBJ_pilotAttributeType,30L #define LN_cNAMERecord "cNAMERecord" #define NID_cNAMERecord 483 #define OBJ_cNAMERecord OBJ_pilotAttributeType,31L #define LN_associatedDomain "associatedDomain" #define NID_associatedDomain 484 #define OBJ_associatedDomain OBJ_pilotAttributeType,37L #define LN_associatedName "associatedName" #define NID_associatedName 485 #define OBJ_associatedName OBJ_pilotAttributeType,38L #define LN_homePostalAddress "homePostalAddress" #define NID_homePostalAddress 486 #define OBJ_homePostalAddress OBJ_pilotAttributeType,39L #define LN_personalTitle "personalTitle" #define NID_personalTitle 487 #define OBJ_personalTitle OBJ_pilotAttributeType,40L #define LN_mobileTelephoneNumber "mobileTelephoneNumber" #define NID_mobileTelephoneNumber 488 #define OBJ_mobileTelephoneNumber OBJ_pilotAttributeType,41L #define LN_pagerTelephoneNumber "pagerTelephoneNumber" #define NID_pagerTelephoneNumber 489 #define OBJ_pagerTelephoneNumber OBJ_pilotAttributeType,42L #define LN_friendlyCountryName "friendlyCountryName" #define NID_friendlyCountryName 490 #define OBJ_friendlyCountryName OBJ_pilotAttributeType,43L #define LN_organizationalStatus "organizationalStatus" #define NID_organizationalStatus 491 #define OBJ_organizationalStatus OBJ_pilotAttributeType,45L #define LN_janetMailbox "janetMailbox" #define NID_janetMailbox 492 #define OBJ_janetMailbox OBJ_pilotAttributeType,46L #define LN_mailPreferenceOption "mailPreferenceOption" #define NID_mailPreferenceOption 493 #define OBJ_mailPreferenceOption OBJ_pilotAttributeType,47L #define LN_buildingName "buildingName" #define NID_buildingName 494 #define OBJ_buildingName OBJ_pilotAttributeType,48L #define LN_dSAQuality "dSAQuality" #define NID_dSAQuality 495 #define OBJ_dSAQuality OBJ_pilotAttributeType,49L #define LN_singleLevelQuality "singleLevelQuality" #define NID_singleLevelQuality 496 #define OBJ_singleLevelQuality OBJ_pilotAttributeType,50L #define LN_subtreeMinimumQuality "subtreeMinimumQuality" #define NID_subtreeMinimumQuality 497 #define OBJ_subtreeMinimumQuality OBJ_pilotAttributeType,51L #define LN_subtreeMaximumQuality "subtreeMaximumQuality" #define NID_subtreeMaximumQuality 498 #define OBJ_subtreeMaximumQuality OBJ_pilotAttributeType,52L #define LN_personalSignature "personalSignature" #define NID_personalSignature 499 #define OBJ_personalSignature OBJ_pilotAttributeType,53L #define LN_dITRedirect "dITRedirect" #define NID_dITRedirect 500 #define OBJ_dITRedirect OBJ_pilotAttributeType,54L #define SN_audio "audio" #define NID_audio 501 #define OBJ_audio OBJ_pilotAttributeType,55L #define LN_documentPublisher "documentPublisher" #define NID_documentPublisher 502 #define OBJ_documentPublisher OBJ_pilotAttributeType,56L #define SN_id_set "id-set" #define LN_id_set "Secure Electronic Transactions" #define NID_id_set 512 #define OBJ_id_set OBJ_international_organizations,42L #define SN_set_ctype "set-ctype" #define LN_set_ctype "content types" #define NID_set_ctype 513 #define OBJ_set_ctype OBJ_id_set,0L #define SN_set_msgExt "set-msgExt" #define LN_set_msgExt "message extensions" #define NID_set_msgExt 514 #define OBJ_set_msgExt OBJ_id_set,1L #define SN_set_attr "set-attr" #define NID_set_attr 515 #define OBJ_set_attr OBJ_id_set,3L #define SN_set_policy "set-policy" #define NID_set_policy 516 #define OBJ_set_policy OBJ_id_set,5L #define SN_set_certExt "set-certExt" #define LN_set_certExt "certificate extensions" #define NID_set_certExt 517 #define OBJ_set_certExt OBJ_id_set,7L #define SN_set_brand "set-brand" #define NID_set_brand 518 #define OBJ_set_brand OBJ_id_set,8L #define SN_setct_PANData "setct-PANData" #define NID_setct_PANData 519 #define OBJ_setct_PANData OBJ_set_ctype,0L #define SN_setct_PANToken "setct-PANToken" #define NID_setct_PANToken 520 #define OBJ_setct_PANToken OBJ_set_ctype,1L #define SN_setct_PANOnly "setct-PANOnly" #define NID_setct_PANOnly 521 #define OBJ_setct_PANOnly OBJ_set_ctype,2L #define SN_setct_OIData "setct-OIData" #define NID_setct_OIData 522 #define OBJ_setct_OIData OBJ_set_ctype,3L #define SN_setct_PI "setct-PI" #define NID_setct_PI 523 #define OBJ_setct_PI OBJ_set_ctype,4L #define SN_setct_PIData "setct-PIData" #define NID_setct_PIData 524 #define OBJ_setct_PIData OBJ_set_ctype,5L #define SN_setct_PIDataUnsigned "setct-PIDataUnsigned" #define NID_setct_PIDataUnsigned 525 #define OBJ_setct_PIDataUnsigned OBJ_set_ctype,6L #define SN_setct_HODInput "setct-HODInput" #define NID_setct_HODInput 526 #define OBJ_setct_HODInput OBJ_set_ctype,7L #define SN_setct_AuthResBaggage "setct-AuthResBaggage" #define NID_setct_AuthResBaggage 527 #define OBJ_setct_AuthResBaggage OBJ_set_ctype,8L #define SN_setct_AuthRevReqBaggage "setct-AuthRevReqBaggage" #define NID_setct_AuthRevReqBaggage 528 #define OBJ_setct_AuthRevReqBaggage OBJ_set_ctype,9L #define SN_setct_AuthRevResBaggage "setct-AuthRevResBaggage" #define NID_setct_AuthRevResBaggage 529 #define OBJ_setct_AuthRevResBaggage OBJ_set_ctype,10L #define SN_setct_CapTokenSeq "setct-CapTokenSeq" #define NID_setct_CapTokenSeq 530 #define OBJ_setct_CapTokenSeq OBJ_set_ctype,11L #define SN_setct_PInitResData "setct-PInitResData" #define NID_setct_PInitResData 531 #define OBJ_setct_PInitResData OBJ_set_ctype,12L #define SN_setct_PI_TBS "setct-PI-TBS" #define NID_setct_PI_TBS 532 #define OBJ_setct_PI_TBS OBJ_set_ctype,13L #define SN_setct_PResData "setct-PResData" #define NID_setct_PResData 533 #define OBJ_setct_PResData OBJ_set_ctype,14L #define SN_setct_AuthReqTBS "setct-AuthReqTBS" #define NID_setct_AuthReqTBS 534 #define OBJ_setct_AuthReqTBS OBJ_set_ctype,16L #define SN_setct_AuthResTBS "setct-AuthResTBS" #define NID_setct_AuthResTBS 535 #define OBJ_setct_AuthResTBS OBJ_set_ctype,17L #define SN_setct_AuthResTBSX "setct-AuthResTBSX" #define NID_setct_AuthResTBSX 536 #define OBJ_setct_AuthResTBSX OBJ_set_ctype,18L #define SN_setct_AuthTokenTBS "setct-AuthTokenTBS" #define NID_setct_AuthTokenTBS 537 #define OBJ_setct_AuthTokenTBS OBJ_set_ctype,19L #define SN_setct_CapTokenData "setct-CapTokenData" #define NID_setct_CapTokenData 538 #define OBJ_setct_CapTokenData OBJ_set_ctype,20L #define SN_setct_CapTokenTBS "setct-CapTokenTBS" #define NID_setct_CapTokenTBS 539 #define OBJ_setct_CapTokenTBS OBJ_set_ctype,21L #define SN_setct_AcqCardCodeMsg "setct-AcqCardCodeMsg" #define NID_setct_AcqCardCodeMsg 540 #define OBJ_setct_AcqCardCodeMsg OBJ_set_ctype,22L #define SN_setct_AuthRevReqTBS "setct-AuthRevReqTBS" #define NID_setct_AuthRevReqTBS 541 #define OBJ_setct_AuthRevReqTBS OBJ_set_ctype,23L #define SN_setct_AuthRevResData "setct-AuthRevResData" #define NID_setct_AuthRevResData 542 #define OBJ_setct_AuthRevResData OBJ_set_ctype,24L #define SN_setct_AuthRevResTBS "setct-AuthRevResTBS" #define NID_setct_AuthRevResTBS 543 #define OBJ_setct_AuthRevResTBS OBJ_set_ctype,25L #define SN_setct_CapReqTBS "setct-CapReqTBS" #define NID_setct_CapReqTBS 544 #define OBJ_setct_CapReqTBS OBJ_set_ctype,26L #define SN_setct_CapReqTBSX "setct-CapReqTBSX" #define NID_setct_CapReqTBSX 545 #define OBJ_setct_CapReqTBSX OBJ_set_ctype,27L #define SN_setct_CapResData "setct-CapResData" #define NID_setct_CapResData 546 #define OBJ_setct_CapResData OBJ_set_ctype,28L #define SN_setct_CapRevReqTBS "setct-CapRevReqTBS" #define NID_setct_CapRevReqTBS 547 #define OBJ_setct_CapRevReqTBS OBJ_set_ctype,29L #define SN_setct_CapRevReqTBSX "setct-CapRevReqTBSX" #define NID_setct_CapRevReqTBSX 548 #define OBJ_setct_CapRevReqTBSX OBJ_set_ctype,30L #define SN_setct_CapRevResData "setct-CapRevResData" #define NID_setct_CapRevResData 549 #define OBJ_setct_CapRevResData OBJ_set_ctype,31L #define SN_setct_CredReqTBS "setct-CredReqTBS" #define NID_setct_CredReqTBS 550 #define OBJ_setct_CredReqTBS OBJ_set_ctype,32L #define SN_setct_CredReqTBSX "setct-CredReqTBSX" #define NID_setct_CredReqTBSX 551 #define OBJ_setct_CredReqTBSX OBJ_set_ctype,33L #define SN_setct_CredResData "setct-CredResData" #define NID_setct_CredResData 552 #define OBJ_setct_CredResData OBJ_set_ctype,34L #define SN_setct_CredRevReqTBS "setct-CredRevReqTBS" #define NID_setct_CredRevReqTBS 553 #define OBJ_setct_CredRevReqTBS OBJ_set_ctype,35L #define SN_setct_CredRevReqTBSX "setct-CredRevReqTBSX" #define NID_setct_CredRevReqTBSX 554 #define OBJ_setct_CredRevReqTBSX OBJ_set_ctype,36L #define SN_setct_CredRevResData "setct-CredRevResData" #define NID_setct_CredRevResData 555 #define OBJ_setct_CredRevResData OBJ_set_ctype,37L #define SN_setct_PCertReqData "setct-PCertReqData" #define NID_setct_PCertReqData 556 #define OBJ_setct_PCertReqData OBJ_set_ctype,38L #define SN_setct_PCertResTBS "setct-PCertResTBS" #define NID_setct_PCertResTBS 557 #define OBJ_setct_PCertResTBS OBJ_set_ctype,39L #define SN_setct_BatchAdminReqData "setct-BatchAdminReqData" #define NID_setct_BatchAdminReqData 558 #define OBJ_setct_BatchAdminReqData OBJ_set_ctype,40L #define SN_setct_BatchAdminResData "setct-BatchAdminResData" #define NID_setct_BatchAdminResData 559 #define OBJ_setct_BatchAdminResData OBJ_set_ctype,41L #define SN_setct_CardCInitResTBS "setct-CardCInitResTBS" #define NID_setct_CardCInitResTBS 560 #define OBJ_setct_CardCInitResTBS OBJ_set_ctype,42L #define SN_setct_MeAqCInitResTBS "setct-MeAqCInitResTBS" #define NID_setct_MeAqCInitResTBS 561 #define OBJ_setct_MeAqCInitResTBS OBJ_set_ctype,43L #define SN_setct_RegFormResTBS "setct-RegFormResTBS" #define NID_setct_RegFormResTBS 562 #define OBJ_setct_RegFormResTBS OBJ_set_ctype,44L #define SN_setct_CertReqData "setct-CertReqData" #define NID_setct_CertReqData 563 #define OBJ_setct_CertReqData OBJ_set_ctype,45L #define SN_setct_CertReqTBS "setct-CertReqTBS" #define NID_setct_CertReqTBS 564 #define OBJ_setct_CertReqTBS OBJ_set_ctype,46L #define SN_setct_CertResData "setct-CertResData" #define NID_setct_CertResData 565 #define OBJ_setct_CertResData OBJ_set_ctype,47L #define SN_setct_CertInqReqTBS "setct-CertInqReqTBS" #define NID_setct_CertInqReqTBS 566 #define OBJ_setct_CertInqReqTBS OBJ_set_ctype,48L #define SN_setct_ErrorTBS "setct-ErrorTBS" #define NID_setct_ErrorTBS 567 #define OBJ_setct_ErrorTBS OBJ_set_ctype,49L #define SN_setct_PIDualSignedTBE "setct-PIDualSignedTBE" #define NID_setct_PIDualSignedTBE 568 #define OBJ_setct_PIDualSignedTBE OBJ_set_ctype,50L #define SN_setct_PIUnsignedTBE "setct-PIUnsignedTBE" #define NID_setct_PIUnsignedTBE 569 #define OBJ_setct_PIUnsignedTBE OBJ_set_ctype,51L #define SN_setct_AuthReqTBE "setct-AuthReqTBE" #define NID_setct_AuthReqTBE 570 #define OBJ_setct_AuthReqTBE OBJ_set_ctype,52L #define SN_setct_AuthResTBE "setct-AuthResTBE" #define NID_setct_AuthResTBE 571 #define OBJ_setct_AuthResTBE OBJ_set_ctype,53L #define SN_setct_AuthResTBEX "setct-AuthResTBEX" #define NID_setct_AuthResTBEX 572 #define OBJ_setct_AuthResTBEX OBJ_set_ctype,54L #define SN_setct_AuthTokenTBE "setct-AuthTokenTBE" #define NID_setct_AuthTokenTBE 573 #define OBJ_setct_AuthTokenTBE OBJ_set_ctype,55L #define SN_setct_CapTokenTBE "setct-CapTokenTBE" #define NID_setct_CapTokenTBE 574 #define OBJ_setct_CapTokenTBE OBJ_set_ctype,56L #define SN_setct_CapTokenTBEX "setct-CapTokenTBEX" #define NID_setct_CapTokenTBEX 575 #define OBJ_setct_CapTokenTBEX OBJ_set_ctype,57L #define SN_setct_AcqCardCodeMsgTBE "setct-AcqCardCodeMsgTBE" #define NID_setct_AcqCardCodeMsgTBE 576 #define OBJ_setct_AcqCardCodeMsgTBE OBJ_set_ctype,58L #define SN_setct_AuthRevReqTBE "setct-AuthRevReqTBE" #define NID_setct_AuthRevReqTBE 577 #define OBJ_setct_AuthRevReqTBE OBJ_set_ctype,59L #define SN_setct_AuthRevResTBE "setct-AuthRevResTBE" #define NID_setct_AuthRevResTBE 578 #define OBJ_setct_AuthRevResTBE OBJ_set_ctype,60L #define SN_setct_AuthRevResTBEB "setct-AuthRevResTBEB" #define NID_setct_AuthRevResTBEB 579 #define OBJ_setct_AuthRevResTBEB OBJ_set_ctype,61L #define SN_setct_CapReqTBE "setct-CapReqTBE" #define NID_setct_CapReqTBE 580 #define OBJ_setct_CapReqTBE OBJ_set_ctype,62L #define SN_setct_CapReqTBEX "setct-CapReqTBEX" #define NID_setct_CapReqTBEX 581 #define OBJ_setct_CapReqTBEX OBJ_set_ctype,63L #define SN_setct_CapResTBE "setct-CapResTBE" #define NID_setct_CapResTBE 582 #define OBJ_setct_CapResTBE OBJ_set_ctype,64L #define SN_setct_CapRevReqTBE "setct-CapRevReqTBE" #define NID_setct_CapRevReqTBE 583 #define OBJ_setct_CapRevReqTBE OBJ_set_ctype,65L #define SN_setct_CapRevReqTBEX "setct-CapRevReqTBEX" #define NID_setct_CapRevReqTBEX 584 #define OBJ_setct_CapRevReqTBEX OBJ_set_ctype,66L #define SN_setct_CapRevResTBE "setct-CapRevResTBE" #define NID_setct_CapRevResTBE 585 #define OBJ_setct_CapRevResTBE OBJ_set_ctype,67L #define SN_setct_CredReqTBE "setct-CredReqTBE" #define NID_setct_CredReqTBE 586 #define OBJ_setct_CredReqTBE OBJ_set_ctype,68L #define SN_setct_CredReqTBEX "setct-CredReqTBEX" #define NID_setct_CredReqTBEX 587 #define OBJ_setct_CredReqTBEX OBJ_set_ctype,69L #define SN_setct_CredResTBE "setct-CredResTBE" #define NID_setct_CredResTBE 588 #define OBJ_setct_CredResTBE OBJ_set_ctype,70L #define SN_setct_CredRevReqTBE "setct-CredRevReqTBE" #define NID_setct_CredRevReqTBE 589 #define OBJ_setct_CredRevReqTBE OBJ_set_ctype,71L #define SN_setct_CredRevReqTBEX "setct-CredRevReqTBEX" #define NID_setct_CredRevReqTBEX 590 #define OBJ_setct_CredRevReqTBEX OBJ_set_ctype,72L #define SN_setct_CredRevResTBE "setct-CredRevResTBE" #define NID_setct_CredRevResTBE 591 #define OBJ_setct_CredRevResTBE OBJ_set_ctype,73L #define SN_setct_BatchAdminReqTBE "setct-BatchAdminReqTBE" #define NID_setct_BatchAdminReqTBE 592 #define OBJ_setct_BatchAdminReqTBE OBJ_set_ctype,74L #define SN_setct_BatchAdminResTBE "setct-BatchAdminResTBE" #define NID_setct_BatchAdminResTBE 593 #define OBJ_setct_BatchAdminResTBE OBJ_set_ctype,75L #define SN_setct_RegFormReqTBE "setct-RegFormReqTBE" #define NID_setct_RegFormReqTBE 594 #define OBJ_setct_RegFormReqTBE OBJ_set_ctype,76L #define SN_setct_CertReqTBE "setct-CertReqTBE" #define NID_setct_CertReqTBE 595 #define OBJ_setct_CertReqTBE OBJ_set_ctype,77L #define SN_setct_CertReqTBEX "setct-CertReqTBEX" #define NID_setct_CertReqTBEX 596 #define OBJ_setct_CertReqTBEX OBJ_set_ctype,78L #define SN_setct_CertResTBE "setct-CertResTBE" #define NID_setct_CertResTBE 597 #define OBJ_setct_CertResTBE OBJ_set_ctype,79L #define SN_setct_CRLNotificationTBS "setct-CRLNotificationTBS" #define NID_setct_CRLNotificationTBS 598 #define OBJ_setct_CRLNotificationTBS OBJ_set_ctype,80L #define SN_setct_CRLNotificationResTBS "setct-CRLNotificationResTBS" #define NID_setct_CRLNotificationResTBS 599 #define OBJ_setct_CRLNotificationResTBS OBJ_set_ctype,81L #define SN_setct_BCIDistributionTBS "setct-BCIDistributionTBS" #define NID_setct_BCIDistributionTBS 600 #define OBJ_setct_BCIDistributionTBS OBJ_set_ctype,82L #define SN_setext_genCrypt "setext-genCrypt" #define LN_setext_genCrypt "generic cryptogram" #define NID_setext_genCrypt 601 #define OBJ_setext_genCrypt OBJ_set_msgExt,1L #define SN_setext_miAuth "setext-miAuth" #define LN_setext_miAuth "merchant initiated auth" #define NID_setext_miAuth 602 #define OBJ_setext_miAuth OBJ_set_msgExt,3L #define SN_setext_pinSecure "setext-pinSecure" #define NID_setext_pinSecure 603 #define OBJ_setext_pinSecure OBJ_set_msgExt,4L #define SN_setext_pinAny "setext-pinAny" #define NID_setext_pinAny 604 #define OBJ_setext_pinAny OBJ_set_msgExt,5L #define SN_setext_track2 "setext-track2" #define NID_setext_track2 605 #define OBJ_setext_track2 OBJ_set_msgExt,7L #define SN_setext_cv "setext-cv" #define LN_setext_cv "additional verification" #define NID_setext_cv 606 #define OBJ_setext_cv OBJ_set_msgExt,8L #define SN_set_policy_root "set-policy-root" #define NID_set_policy_root 607 #define OBJ_set_policy_root OBJ_set_policy,0L #define SN_setCext_hashedRoot "setCext-hashedRoot" #define NID_setCext_hashedRoot 608 #define OBJ_setCext_hashedRoot OBJ_set_certExt,0L #define SN_setCext_certType "setCext-certType" #define NID_setCext_certType 609 #define OBJ_setCext_certType OBJ_set_certExt,1L #define SN_setCext_merchData "setCext-merchData" #define NID_setCext_merchData 610 #define OBJ_setCext_merchData OBJ_set_certExt,2L #define SN_setCext_cCertRequired "setCext-cCertRequired" #define NID_setCext_cCertRequired 611 #define OBJ_setCext_cCertRequired OBJ_set_certExt,3L #define SN_setCext_tunneling "setCext-tunneling" #define NID_setCext_tunneling 612 #define OBJ_setCext_tunneling OBJ_set_certExt,4L #define SN_setCext_setExt "setCext-setExt" #define NID_setCext_setExt 613 #define OBJ_setCext_setExt OBJ_set_certExt,5L #define SN_setCext_setQualf "setCext-setQualf" #define NID_setCext_setQualf 614 #define OBJ_setCext_setQualf OBJ_set_certExt,6L #define SN_setCext_PGWYcapabilities "setCext-PGWYcapabilities" #define NID_setCext_PGWYcapabilities 615 #define OBJ_setCext_PGWYcapabilities OBJ_set_certExt,7L #define SN_setCext_TokenIdentifier "setCext-TokenIdentifier" #define NID_setCext_TokenIdentifier 616 #define OBJ_setCext_TokenIdentifier OBJ_set_certExt,8L #define SN_setCext_Track2Data "setCext-Track2Data" #define NID_setCext_Track2Data 617 #define OBJ_setCext_Track2Data OBJ_set_certExt,9L #define SN_setCext_TokenType "setCext-TokenType" #define NID_setCext_TokenType 618 #define OBJ_setCext_TokenType OBJ_set_certExt,10L #define SN_setCext_IssuerCapabilities "setCext-IssuerCapabilities" #define NID_setCext_IssuerCapabilities 619 #define OBJ_setCext_IssuerCapabilities OBJ_set_certExt,11L #define SN_setAttr_Cert "setAttr-Cert" #define NID_setAttr_Cert 620 #define OBJ_setAttr_Cert OBJ_set_attr,0L #define SN_setAttr_PGWYcap "setAttr-PGWYcap" #define LN_setAttr_PGWYcap "payment gateway capabilities" #define NID_setAttr_PGWYcap 621 #define OBJ_setAttr_PGWYcap OBJ_set_attr,1L #define SN_setAttr_TokenType "setAttr-TokenType" #define NID_setAttr_TokenType 622 #define OBJ_setAttr_TokenType OBJ_set_attr,2L #define SN_setAttr_IssCap "setAttr-IssCap" #define LN_setAttr_IssCap "issuer capabilities" #define NID_setAttr_IssCap 623 #define OBJ_setAttr_IssCap OBJ_set_attr,3L #define SN_set_rootKeyThumb "set-rootKeyThumb" #define NID_set_rootKeyThumb 624 #define OBJ_set_rootKeyThumb OBJ_setAttr_Cert,0L #define SN_set_addPolicy "set-addPolicy" #define NID_set_addPolicy 625 #define OBJ_set_addPolicy OBJ_setAttr_Cert,1L #define SN_setAttr_Token_EMV "setAttr-Token-EMV" #define NID_setAttr_Token_EMV 626 #define OBJ_setAttr_Token_EMV OBJ_setAttr_TokenType,1L #define SN_setAttr_Token_B0Prime "setAttr-Token-B0Prime" #define NID_setAttr_Token_B0Prime 627 #define OBJ_setAttr_Token_B0Prime OBJ_setAttr_TokenType,2L #define SN_setAttr_IssCap_CVM "setAttr-IssCap-CVM" #define NID_setAttr_IssCap_CVM 628 #define OBJ_setAttr_IssCap_CVM OBJ_setAttr_IssCap,3L #define SN_setAttr_IssCap_T2 "setAttr-IssCap-T2" #define NID_setAttr_IssCap_T2 629 #define OBJ_setAttr_IssCap_T2 OBJ_setAttr_IssCap,4L #define SN_setAttr_IssCap_Sig "setAttr-IssCap-Sig" #define NID_setAttr_IssCap_Sig 630 #define OBJ_setAttr_IssCap_Sig OBJ_setAttr_IssCap,5L #define SN_setAttr_GenCryptgrm "setAttr-GenCryptgrm" #define LN_setAttr_GenCryptgrm "generate cryptogram" #define NID_setAttr_GenCryptgrm 631 #define OBJ_setAttr_GenCryptgrm OBJ_setAttr_IssCap_CVM,1L #define SN_setAttr_T2Enc "setAttr-T2Enc" #define LN_setAttr_T2Enc "encrypted track 2" #define NID_setAttr_T2Enc 632 #define OBJ_setAttr_T2Enc OBJ_setAttr_IssCap_T2,1L #define SN_setAttr_T2cleartxt "setAttr-T2cleartxt" #define LN_setAttr_T2cleartxt "cleartext track 2" #define NID_setAttr_T2cleartxt 633 #define OBJ_setAttr_T2cleartxt OBJ_setAttr_IssCap_T2,2L #define SN_setAttr_TokICCsig "setAttr-TokICCsig" #define LN_setAttr_TokICCsig "ICC or token signature" #define NID_setAttr_TokICCsig 634 #define OBJ_setAttr_TokICCsig OBJ_setAttr_IssCap_Sig,1L #define SN_setAttr_SecDevSig "setAttr-SecDevSig" #define LN_setAttr_SecDevSig "secure device signature" #define NID_setAttr_SecDevSig 635 #define OBJ_setAttr_SecDevSig OBJ_setAttr_IssCap_Sig,2L #define SN_set_brand_IATA_ATA "set-brand-IATA-ATA" #define NID_set_brand_IATA_ATA 636 #define OBJ_set_brand_IATA_ATA OBJ_set_brand,1L #define SN_set_brand_Diners "set-brand-Diners" #define NID_set_brand_Diners 637 #define OBJ_set_brand_Diners OBJ_set_brand,30L #define SN_set_brand_AmericanExpress "set-brand-AmericanExpress" #define NID_set_brand_AmericanExpress 638 #define OBJ_set_brand_AmericanExpress OBJ_set_brand,34L #define SN_set_brand_JCB "set-brand-JCB" #define NID_set_brand_JCB 639 #define OBJ_set_brand_JCB OBJ_set_brand,35L #define SN_set_brand_Visa "set-brand-Visa" #define NID_set_brand_Visa 640 #define OBJ_set_brand_Visa OBJ_set_brand,4L #define SN_set_brand_MasterCard "set-brand-MasterCard" #define NID_set_brand_MasterCard 641 #define OBJ_set_brand_MasterCard OBJ_set_brand,5L #define SN_set_brand_Novus "set-brand-Novus" #define NID_set_brand_Novus 642 #define OBJ_set_brand_Novus OBJ_set_brand,6011L #define SN_des_cdmf "DES-CDMF" #define LN_des_cdmf "des-cdmf" #define NID_des_cdmf 643 #define OBJ_des_cdmf OBJ_rsadsi,3L,10L #define SN_rsaOAEPEncryptionSET "rsaOAEPEncryptionSET" #define NID_rsaOAEPEncryptionSET 644 #define OBJ_rsaOAEPEncryptionSET OBJ_rsadsi,1L,1L,6L #define SN_ipsec3 "Oakley-EC2N-3" #define LN_ipsec3 "ipsec3" #define NID_ipsec3 749 #define SN_ipsec4 "Oakley-EC2N-4" #define LN_ipsec4 "ipsec4" #define NID_ipsec4 750 #define SN_whirlpool "whirlpool" #define NID_whirlpool 804 #define OBJ_whirlpool OBJ_iso,0L,10118L,3L,0L,55L #define SN_cryptopro "cryptopro" #define NID_cryptopro 805 #define OBJ_cryptopro OBJ_member_body,643L,2L,2L #define SN_cryptocom "cryptocom" #define NID_cryptocom 806 #define OBJ_cryptocom OBJ_member_body,643L,2L,9L #define SN_id_GostR3411_94_with_GostR3410_2001 "id-GostR3411-94-with-GostR3410-2001" #define LN_id_GostR3411_94_with_GostR3410_2001 "GOST R 34.11-94 with GOST R 34.10-2001" #define NID_id_GostR3411_94_with_GostR3410_2001 807 #define OBJ_id_GostR3411_94_with_GostR3410_2001 OBJ_cryptopro,3L #define SN_id_GostR3411_94_with_GostR3410_94 "id-GostR3411-94-with-GostR3410-94" #define LN_id_GostR3411_94_with_GostR3410_94 "GOST R 34.11-94 with GOST R 34.10-94" #define NID_id_GostR3411_94_with_GostR3410_94 808 #define OBJ_id_GostR3411_94_with_GostR3410_94 OBJ_cryptopro,4L #define SN_id_GostR3411_94 "md_gost94" #define LN_id_GostR3411_94 "GOST R 34.11-94" #define NID_id_GostR3411_94 809 #define OBJ_id_GostR3411_94 OBJ_cryptopro,9L #define SN_id_HMACGostR3411_94 "id-HMACGostR3411-94" #define LN_id_HMACGostR3411_94 "HMAC GOST 34.11-94" #define NID_id_HMACGostR3411_94 810 #define OBJ_id_HMACGostR3411_94 OBJ_cryptopro,10L #define SN_id_GostR3410_2001 "gost2001" #define LN_id_GostR3410_2001 "GOST R 34.10-2001" #define NID_id_GostR3410_2001 811 #define OBJ_id_GostR3410_2001 OBJ_cryptopro,19L #define SN_id_GostR3410_94 "gost94" #define LN_id_GostR3410_94 "GOST R 34.10-94" #define NID_id_GostR3410_94 812 #define OBJ_id_GostR3410_94 OBJ_cryptopro,20L #define SN_id_Gost28147_89 "gost89" #define LN_id_Gost28147_89 "GOST 28147-89" #define NID_id_Gost28147_89 813 #define OBJ_id_Gost28147_89 OBJ_cryptopro,21L #define SN_gost89_cnt "gost89-cnt" #define NID_gost89_cnt 814 #define SN_id_Gost28147_89_MAC "gost-mac" #define LN_id_Gost28147_89_MAC "GOST 28147-89 MAC" #define NID_id_Gost28147_89_MAC 815 #define OBJ_id_Gost28147_89_MAC OBJ_cryptopro,22L #define SN_id_GostR3411_94_prf "prf-gostr3411-94" #define LN_id_GostR3411_94_prf "GOST R 34.11-94 PRF" #define NID_id_GostR3411_94_prf 816 #define OBJ_id_GostR3411_94_prf OBJ_cryptopro,23L #define SN_id_GostR3410_2001DH "id-GostR3410-2001DH" #define LN_id_GostR3410_2001DH "GOST R 34.10-2001 DH" #define NID_id_GostR3410_2001DH 817 #define OBJ_id_GostR3410_2001DH OBJ_cryptopro,98L #define SN_id_GostR3410_94DH "id-GostR3410-94DH" #define LN_id_GostR3410_94DH "GOST R 34.10-94 DH" #define NID_id_GostR3410_94DH 818 #define OBJ_id_GostR3410_94DH OBJ_cryptopro,99L #define SN_id_Gost28147_89_CryptoPro_KeyMeshing "id-Gost28147-89-CryptoPro-KeyMeshing" #define NID_id_Gost28147_89_CryptoPro_KeyMeshing 819 #define OBJ_id_Gost28147_89_CryptoPro_KeyMeshing OBJ_cryptopro,14L,1L #define SN_id_Gost28147_89_None_KeyMeshing "id-Gost28147-89-None-KeyMeshing" #define NID_id_Gost28147_89_None_KeyMeshing 820 #define OBJ_id_Gost28147_89_None_KeyMeshing OBJ_cryptopro,14L,0L #define SN_id_GostR3411_94_TestParamSet "id-GostR3411-94-TestParamSet" #define NID_id_GostR3411_94_TestParamSet 821 #define OBJ_id_GostR3411_94_TestParamSet OBJ_cryptopro,30L,0L #define SN_id_GostR3411_94_CryptoProParamSet "id-GostR3411-94-CryptoProParamSet" #define NID_id_GostR3411_94_CryptoProParamSet 822 #define OBJ_id_GostR3411_94_CryptoProParamSet OBJ_cryptopro,30L,1L #define SN_id_Gost28147_89_TestParamSet "id-Gost28147-89-TestParamSet" #define NID_id_Gost28147_89_TestParamSet 823 #define OBJ_id_Gost28147_89_TestParamSet OBJ_cryptopro,31L,0L #define SN_id_Gost28147_89_CryptoPro_A_ParamSet "id-Gost28147-89-CryptoPro-A-ParamSet" #define NID_id_Gost28147_89_CryptoPro_A_ParamSet 824 #define OBJ_id_Gost28147_89_CryptoPro_A_ParamSet OBJ_cryptopro,31L,1L #define SN_id_Gost28147_89_CryptoPro_B_ParamSet "id-Gost28147-89-CryptoPro-B-ParamSet" #define NID_id_Gost28147_89_CryptoPro_B_ParamSet 825 #define OBJ_id_Gost28147_89_CryptoPro_B_ParamSet OBJ_cryptopro,31L,2L #define SN_id_Gost28147_89_CryptoPro_C_ParamSet "id-Gost28147-89-CryptoPro-C-ParamSet" #define NID_id_Gost28147_89_CryptoPro_C_ParamSet 826 #define OBJ_id_Gost28147_89_CryptoPro_C_ParamSet OBJ_cryptopro,31L,3L #define SN_id_Gost28147_89_CryptoPro_D_ParamSet "id-Gost28147-89-CryptoPro-D-ParamSet" #define NID_id_Gost28147_89_CryptoPro_D_ParamSet 827 #define OBJ_id_Gost28147_89_CryptoPro_D_ParamSet OBJ_cryptopro,31L,4L #define SN_id_Gost28147_89_CryptoPro_Oscar_1_1_ParamSet "id-Gost28147-89-CryptoPro-Oscar-1-1-ParamSet" #define NID_id_Gost28147_89_CryptoPro_Oscar_1_1_ParamSet 828 #define OBJ_id_Gost28147_89_CryptoPro_Oscar_1_1_ParamSet OBJ_cryptopro,31L,5L #define SN_id_Gost28147_89_CryptoPro_Oscar_1_0_ParamSet "id-Gost28147-89-CryptoPro-Oscar-1-0-ParamSet" #define NID_id_Gost28147_89_CryptoPro_Oscar_1_0_ParamSet 829 #define OBJ_id_Gost28147_89_CryptoPro_Oscar_1_0_ParamSet OBJ_cryptopro,31L,6L #define SN_id_Gost28147_89_CryptoPro_RIC_1_ParamSet "id-Gost28147-89-CryptoPro-RIC-1-ParamSet" #define NID_id_Gost28147_89_CryptoPro_RIC_1_ParamSet 830 #define OBJ_id_Gost28147_89_CryptoPro_RIC_1_ParamSet OBJ_cryptopro,31L,7L #define SN_id_GostR3410_94_TestParamSet "id-GostR3410-94-TestParamSet" #define NID_id_GostR3410_94_TestParamSet 831 #define OBJ_id_GostR3410_94_TestParamSet OBJ_cryptopro,32L,0L #define SN_id_GostR3410_94_CryptoPro_A_ParamSet "id-GostR3410-94-CryptoPro-A-ParamSet" #define NID_id_GostR3410_94_CryptoPro_A_ParamSet 832 #define OBJ_id_GostR3410_94_CryptoPro_A_ParamSet OBJ_cryptopro,32L,2L #define SN_id_GostR3410_94_CryptoPro_B_ParamSet "id-GostR3410-94-CryptoPro-B-ParamSet" #define NID_id_GostR3410_94_CryptoPro_B_ParamSet 833 #define OBJ_id_GostR3410_94_CryptoPro_B_ParamSet OBJ_cryptopro,32L,3L #define SN_id_GostR3410_94_CryptoPro_C_ParamSet "id-GostR3410-94-CryptoPro-C-ParamSet" #define NID_id_GostR3410_94_CryptoPro_C_ParamSet 834 #define OBJ_id_GostR3410_94_CryptoPro_C_ParamSet OBJ_cryptopro,32L,4L #define SN_id_GostR3410_94_CryptoPro_D_ParamSet "id-GostR3410-94-CryptoPro-D-ParamSet" #define NID_id_GostR3410_94_CryptoPro_D_ParamSet 835 #define OBJ_id_GostR3410_94_CryptoPro_D_ParamSet OBJ_cryptopro,32L,5L #define SN_id_GostR3410_94_CryptoPro_XchA_ParamSet "id-GostR3410-94-CryptoPro-XchA-ParamSet" #define NID_id_GostR3410_94_CryptoPro_XchA_ParamSet 836 #define OBJ_id_GostR3410_94_CryptoPro_XchA_ParamSet OBJ_cryptopro,33L,1L #define SN_id_GostR3410_94_CryptoPro_XchB_ParamSet "id-GostR3410-94-CryptoPro-XchB-ParamSet" #define NID_id_GostR3410_94_CryptoPro_XchB_ParamSet 837 #define OBJ_id_GostR3410_94_CryptoPro_XchB_ParamSet OBJ_cryptopro,33L,2L #define SN_id_GostR3410_94_CryptoPro_XchC_ParamSet "id-GostR3410-94-CryptoPro-XchC-ParamSet" #define NID_id_GostR3410_94_CryptoPro_XchC_ParamSet 838 #define OBJ_id_GostR3410_94_CryptoPro_XchC_ParamSet OBJ_cryptopro,33L,3L #define SN_id_GostR3410_2001_TestParamSet "id-GostR3410-2001-TestParamSet" #define NID_id_GostR3410_2001_TestParamSet 839 #define OBJ_id_GostR3410_2001_TestParamSet OBJ_cryptopro,35L,0L #define SN_id_GostR3410_2001_CryptoPro_A_ParamSet "id-GostR3410-2001-CryptoPro-A-ParamSet" #define NID_id_GostR3410_2001_CryptoPro_A_ParamSet 840 #define OBJ_id_GostR3410_2001_CryptoPro_A_ParamSet OBJ_cryptopro,35L,1L #define SN_id_GostR3410_2001_CryptoPro_B_ParamSet "id-GostR3410-2001-CryptoPro-B-ParamSet" #define NID_id_GostR3410_2001_CryptoPro_B_ParamSet 841 #define OBJ_id_GostR3410_2001_CryptoPro_B_ParamSet OBJ_cryptopro,35L,2L #define SN_id_GostR3410_2001_CryptoPro_C_ParamSet "id-GostR3410-2001-CryptoPro-C-ParamSet" #define NID_id_GostR3410_2001_CryptoPro_C_ParamSet 842 #define OBJ_id_GostR3410_2001_CryptoPro_C_ParamSet OBJ_cryptopro,35L,3L #define SN_id_GostR3410_2001_CryptoPro_XchA_ParamSet "id-GostR3410-2001-CryptoPro-XchA-ParamSet" #define NID_id_GostR3410_2001_CryptoPro_XchA_ParamSet 843 #define OBJ_id_GostR3410_2001_CryptoPro_XchA_ParamSet OBJ_cryptopro,36L,0L #define SN_id_GostR3410_2001_CryptoPro_XchB_ParamSet "id-GostR3410-2001-CryptoPro-XchB-ParamSet" #define NID_id_GostR3410_2001_CryptoPro_XchB_ParamSet 844 #define OBJ_id_GostR3410_2001_CryptoPro_XchB_ParamSet OBJ_cryptopro,36L,1L #define SN_id_GostR3410_94_a "id-GostR3410-94-a" #define NID_id_GostR3410_94_a 845 #define OBJ_id_GostR3410_94_a OBJ_id_GostR3410_94,1L #define SN_id_GostR3410_94_aBis "id-GostR3410-94-aBis" #define NID_id_GostR3410_94_aBis 846 #define OBJ_id_GostR3410_94_aBis OBJ_id_GostR3410_94,2L #define SN_id_GostR3410_94_b "id-GostR3410-94-b" #define NID_id_GostR3410_94_b 847 #define OBJ_id_GostR3410_94_b OBJ_id_GostR3410_94,3L #define SN_id_GostR3410_94_bBis "id-GostR3410-94-bBis" #define NID_id_GostR3410_94_bBis 848 #define OBJ_id_GostR3410_94_bBis OBJ_id_GostR3410_94,4L #define SN_id_Gost28147_89_cc "id-Gost28147-89-cc" #define LN_id_Gost28147_89_cc "GOST 28147-89 Cryptocom ParamSet" #define NID_id_Gost28147_89_cc 849 #define OBJ_id_Gost28147_89_cc OBJ_cryptocom,1L,6L,1L #define SN_id_GostR3410_94_cc "gost94cc" #define LN_id_GostR3410_94_cc "GOST 34.10-94 Cryptocom" #define NID_id_GostR3410_94_cc 850 #define OBJ_id_GostR3410_94_cc OBJ_cryptocom,1L,5L,3L #define SN_id_GostR3410_2001_cc "gost2001cc" #define LN_id_GostR3410_2001_cc "GOST 34.10-2001 Cryptocom" #define NID_id_GostR3410_2001_cc 851 #define OBJ_id_GostR3410_2001_cc OBJ_cryptocom,1L,5L,4L #define SN_id_GostR3411_94_with_GostR3410_94_cc "id-GostR3411-94-with-GostR3410-94-cc" #define LN_id_GostR3411_94_with_GostR3410_94_cc "GOST R 34.11-94 with GOST R 34.10-94 Cryptocom" #define NID_id_GostR3411_94_with_GostR3410_94_cc 852 #define OBJ_id_GostR3411_94_with_GostR3410_94_cc OBJ_cryptocom,1L,3L,3L #define SN_id_GostR3411_94_with_GostR3410_2001_cc "id-GostR3411-94-with-GostR3410-2001-cc" #define LN_id_GostR3411_94_with_GostR3410_2001_cc "GOST R 34.11-94 with GOST R 34.10-2001 Cryptocom" #define NID_id_GostR3411_94_with_GostR3410_2001_cc 853 #define OBJ_id_GostR3411_94_with_GostR3410_2001_cc OBJ_cryptocom,1L,3L,4L #define SN_id_GostR3410_2001_ParamSet_cc "id-GostR3410-2001-ParamSet-cc" #define LN_id_GostR3410_2001_ParamSet_cc "GOST R 3410-2001 Parameter Set Cryptocom" #define NID_id_GostR3410_2001_ParamSet_cc 854 #define OBJ_id_GostR3410_2001_ParamSet_cc OBJ_cryptocom,1L,8L,1L #define SN_camellia_128_cbc "CAMELLIA-128-CBC" #define LN_camellia_128_cbc "camellia-128-cbc" #define NID_camellia_128_cbc 751 #define OBJ_camellia_128_cbc 1L,2L,392L,200011L,61L,1L,1L,1L,2L #define SN_camellia_192_cbc "CAMELLIA-192-CBC" #define LN_camellia_192_cbc "camellia-192-cbc" #define NID_camellia_192_cbc 752 #define OBJ_camellia_192_cbc 1L,2L,392L,200011L,61L,1L,1L,1L,3L #define SN_camellia_256_cbc "CAMELLIA-256-CBC" #define LN_camellia_256_cbc "camellia-256-cbc" #define NID_camellia_256_cbc 753 #define OBJ_camellia_256_cbc 1L,2L,392L,200011L,61L,1L,1L,1L,4L #define SN_id_camellia128_wrap "id-camellia128-wrap" #define NID_id_camellia128_wrap 907 #define OBJ_id_camellia128_wrap 1L,2L,392L,200011L,61L,1L,1L,3L,2L #define SN_id_camellia192_wrap "id-camellia192-wrap" #define NID_id_camellia192_wrap 908 #define OBJ_id_camellia192_wrap 1L,2L,392L,200011L,61L,1L,1L,3L,3L #define SN_id_camellia256_wrap "id-camellia256-wrap" #define NID_id_camellia256_wrap 909 #define OBJ_id_camellia256_wrap 1L,2L,392L,200011L,61L,1L,1L,3L,4L #define OBJ_ntt_ds 0L,3L,4401L,5L #define OBJ_camellia OBJ_ntt_ds,3L,1L,9L #define SN_camellia_128_ecb "CAMELLIA-128-ECB" #define LN_camellia_128_ecb "camellia-128-ecb" #define NID_camellia_128_ecb 754 #define OBJ_camellia_128_ecb OBJ_camellia,1L #define SN_camellia_128_ofb128 "CAMELLIA-128-OFB" #define LN_camellia_128_ofb128 "camellia-128-ofb" #define NID_camellia_128_ofb128 766 #define OBJ_camellia_128_ofb128 OBJ_camellia,3L #define SN_camellia_128_cfb128 "CAMELLIA-128-CFB" #define LN_camellia_128_cfb128 "camellia-128-cfb" #define NID_camellia_128_cfb128 757 #define OBJ_camellia_128_cfb128 OBJ_camellia,4L #define SN_camellia_192_ecb "CAMELLIA-192-ECB" #define LN_camellia_192_ecb "camellia-192-ecb" #define NID_camellia_192_ecb 755 #define OBJ_camellia_192_ecb OBJ_camellia,21L #define SN_camellia_192_ofb128 "CAMELLIA-192-OFB" #define LN_camellia_192_ofb128 "camellia-192-ofb" #define NID_camellia_192_ofb128 767 #define OBJ_camellia_192_ofb128 OBJ_camellia,23L #define SN_camellia_192_cfb128 "CAMELLIA-192-CFB" #define LN_camellia_192_cfb128 "camellia-192-cfb" #define NID_camellia_192_cfb128 758 #define OBJ_camellia_192_cfb128 OBJ_camellia,24L #define SN_camellia_256_ecb "CAMELLIA-256-ECB" #define LN_camellia_256_ecb "camellia-256-ecb" #define NID_camellia_256_ecb 756 #define OBJ_camellia_256_ecb OBJ_camellia,41L #define SN_camellia_256_ofb128 "CAMELLIA-256-OFB" #define LN_camellia_256_ofb128 "camellia-256-ofb" #define NID_camellia_256_ofb128 768 #define OBJ_camellia_256_ofb128 OBJ_camellia,43L #define SN_camellia_256_cfb128 "CAMELLIA-256-CFB" #define LN_camellia_256_cfb128 "camellia-256-cfb" #define NID_camellia_256_cfb128 759 #define OBJ_camellia_256_cfb128 OBJ_camellia,44L #define SN_camellia_128_cfb1 "CAMELLIA-128-CFB1" #define LN_camellia_128_cfb1 "camellia-128-cfb1" #define NID_camellia_128_cfb1 760 #define SN_camellia_192_cfb1 "CAMELLIA-192-CFB1" #define LN_camellia_192_cfb1 "camellia-192-cfb1" #define NID_camellia_192_cfb1 761 #define SN_camellia_256_cfb1 "CAMELLIA-256-CFB1" #define LN_camellia_256_cfb1 "camellia-256-cfb1" #define NID_camellia_256_cfb1 762 #define SN_camellia_128_cfb8 "CAMELLIA-128-CFB8" #define LN_camellia_128_cfb8 "camellia-128-cfb8" #define NID_camellia_128_cfb8 763 #define SN_camellia_192_cfb8 "CAMELLIA-192-CFB8" #define LN_camellia_192_cfb8 "camellia-192-cfb8" #define NID_camellia_192_cfb8 764 #define SN_camellia_256_cfb8 "CAMELLIA-256-CFB8" #define LN_camellia_256_cfb8 "camellia-256-cfb8" #define NID_camellia_256_cfb8 765 #define SN_kisa "KISA" #define LN_kisa "kisa" #define NID_kisa 773 #define OBJ_kisa OBJ_member_body,410L,200004L #define SN_seed_ecb "SEED-ECB" #define LN_seed_ecb "seed-ecb" #define NID_seed_ecb 776 #define OBJ_seed_ecb OBJ_kisa,1L,3L #define SN_seed_cbc "SEED-CBC" #define LN_seed_cbc "seed-cbc" #define NID_seed_cbc 777 #define OBJ_seed_cbc OBJ_kisa,1L,4L #define SN_seed_cfb128 "SEED-CFB" #define LN_seed_cfb128 "seed-cfb" #define NID_seed_cfb128 779 #define OBJ_seed_cfb128 OBJ_kisa,1L,5L #define SN_seed_ofb128 "SEED-OFB" #define LN_seed_ofb128 "seed-ofb" #define NID_seed_ofb128 778 #define OBJ_seed_ofb128 OBJ_kisa,1L,6L #define SN_hmac "HMAC" #define LN_hmac "hmac" #define NID_hmac 855 #define SN_cmac "CMAC" #define LN_cmac "cmac" #define NID_cmac 894 #define SN_rc4_hmac_md5 "RC4-HMAC-MD5" #define LN_rc4_hmac_md5 "rc4-hmac-md5" #define NID_rc4_hmac_md5 915 #define SN_aes_128_cbc_hmac_sha1 "AES-128-CBC-HMAC-SHA1" #define LN_aes_128_cbc_hmac_sha1 "aes-128-cbc-hmac-sha1" #define NID_aes_128_cbc_hmac_sha1 916 #define SN_aes_192_cbc_hmac_sha1 "AES-192-CBC-HMAC-SHA1" #define LN_aes_192_cbc_hmac_sha1 "aes-192-cbc-hmac-sha1" #define NID_aes_192_cbc_hmac_sha1 917 #define SN_aes_256_cbc_hmac_sha1 "AES-256-CBC-HMAC-SHA1" #define LN_aes_256_cbc_hmac_sha1 "aes-256-cbc-hmac-sha1" #define NID_aes_256_cbc_hmac_sha1 918 # 66 "/usr/include/openssl/objects.h" 2 3 4 # 960 "/usr/include/openssl/objects.h" 3 4 # 1 "/usr/include/openssl/asn1.h" 1 3 4 # 60 "/usr/include/openssl/asn1.h" 3 4 #define HEADER_ASN1_H # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 #define _TIME_H 1 #define __need_size_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 161 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_ptrdiff_t # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 343 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL #define offsetof(TYPE,MEMBER) __builtin_offsetof (TYPE, MEMBER) # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 41 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #define _BITS_TIME_H 1 #define CLOCKS_PER_SEC 1000000l # 61 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #define CLOCK_REALTIME 0 #define CLOCK_MONOTONIC 1 #define CLOCK_PROCESS_CPUTIME_ID 2 #define CLOCK_THREAD_CPUTIME_ID 3 #define CLOCK_MONOTONIC_RAW 4 #define CLOCK_REALTIME_COARSE 5 #define CLOCK_MONOTONIC_COARSE 6 #define CLOCK_BOOTTIME 7 #define CLOCK_REALTIME_ALARM 8 #define CLOCK_BOOTTIME_ALARM 9 #define TIMER_ABSTIME 1 # 99 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #undef __need_timeval # 43 "/usr/include/time.h" 2 3 4 # 67 "/usr/include/time.h" 3 4 #undef __need_clock_t # 83 "/usr/include/time.h" 3 4 #undef __need_time_t # 95 "/usr/include/time.h" 3 4 #undef __clockid_time_t # 107 "/usr/include/time.h" 3 4 #undef __need_timer_t # 127 "/usr/include/time.h" 3 4 #undef __need_timespec struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 215 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 22 "/usr/include/xlocale.h" 3 4 #define _XLOCALE_H 1 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); #define __isleap(year) ((year) % 4 == 0 && ((year) % 100 != 0 || (year) % 400 == 0)) # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 417 "/usr/include/time.h" 3 4 # 63 "/usr/include/openssl/asn1.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 64 "/usr/include/openssl/asn1.h" 2 3 4 # 74 "/usr/include/openssl/asn1.h" 3 4 # 1 "/usr/include/openssl/bn.h" 1 3 4 # 126 "/usr/include/openssl/bn.h" 3 4 #define HEADER_BN_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 152 "/usr/include/openssl/opensslconf.h" 3 4 #define CONFIG_HEADER_BN_H #undef BN_LLONG #define SIXTY_FOUR_BIT_LONG #undef SIXTY_FOUR_BIT #undef THIRTY_TWO_BIT # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 129 "/usr/include/openssl/bn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 30 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 #define _GCC_LIMITS_H_ # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 1 3 4 #define _GCC_NEXT_LIMITS_H # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 1 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 25 "/usr/include/limits.h" 3 4 #define _LIBC_LIMITS_H_ 1 #define MB_LEN_MAX 16 # 133 "/usr/include/limits.h" 3 4 #define LLONG_MIN (-LLONG_MAX-1) #define LLONG_MAX __LONG_LONG_MAX__ #define ULLONG_MAX (LLONG_MAX * 2ULL + 1) # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 #define _BITS_POSIX1_LIM_H 1 #define _POSIX_AIO_LISTIO_MAX 2 #define _POSIX_AIO_MAX 1 #define _POSIX_ARG_MAX 4096 #define _POSIX_CHILD_MAX 25 #define _POSIX_DELAYTIMER_MAX 32 #define _POSIX_HOST_NAME_MAX 255 #define _POSIX_LINK_MAX 8 #define _POSIX_LOGIN_NAME_MAX 9 #define _POSIX_MAX_CANON 255 #define _POSIX_MAX_INPUT 255 #define _POSIX_MQ_OPEN_MAX 8 #define _POSIX_MQ_PRIO_MAX 32 #define _POSIX_NAME_MAX 14 #define _POSIX_NGROUPS_MAX 8 #define _POSIX_OPEN_MAX 20 # 97 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 #define _POSIX_PATH_MAX 256 #define _POSIX_PIPE_BUF 512 #define _POSIX_RE_DUP_MAX 255 #define _POSIX_RTSIG_MAX 8 #define _POSIX_SEM_NSEMS_MAX 256 #define _POSIX_SEM_VALUE_MAX 32767 #define _POSIX_SIGQUEUE_MAX 32 #define _POSIX_SSIZE_MAX 32767 #define _POSIX_STREAM_MAX 8 #define _POSIX_SYMLINK_MAX 255 #define _POSIX_SYMLOOP_MAX 8 #define _POSIX_TIMER_MAX 32 #define _POSIX_TTY_NAME_MAX 9 #define _POSIX_TZNAME_MAX 6 # 153 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 #define _POSIX_CLOCKRES_MIN 20000000 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 #define __undef_NR_OPEN #define __undef_LINK_MAX #define __undef_OPEN_MAX #define __undef_ARG_MAX # 1 "/usr/include/linux/limits.h" 1 3 4 #define _LINUX_LIMITS_H #define NR_OPEN 1024 #define NGROUPS_MAX 65536 #define ARG_MAX 131072 #define LINK_MAX 127 #define MAX_CANON 255 #define MAX_INPUT 255 #define NAME_MAX 255 #define PATH_MAX 4096 #define PIPE_BUF 4096 #define XATTR_NAME_MAX 255 #define XATTR_SIZE_MAX 65536 #define XATTR_LIST_MAX 65536 #define RTSIG_MAX 32 # 40 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 #undef NR_OPEN #undef __undef_NR_OPEN #undef LINK_MAX #undef __undef_LINK_MAX #undef OPEN_MAX #undef __undef_OPEN_MAX #undef ARG_MAX #undef __undef_ARG_MAX #define _POSIX_THREAD_KEYS_MAX 128 #define PTHREAD_KEYS_MAX 1024 #define _POSIX_THREAD_DESTRUCTOR_ITERATIONS 4 #define PTHREAD_DESTRUCTOR_ITERATIONS _POSIX_THREAD_DESTRUCTOR_ITERATIONS #define _POSIX_THREAD_THREADS_MAX 64 #undef PTHREAD_THREADS_MAX #define AIO_PRIO_DELTA_MAX 20 #define PTHREAD_STACK_MIN 16384 #define DELAYTIMER_MAX 2147483647 #define TTY_NAME_MAX 32 #define LOGIN_NAME_MAX 256 #define HOST_NAME_MAX 64 #define MQ_PRIO_MAX 32768 #define SEM_VALUE_MAX (2147483647) # 158 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 #define SSIZE_MAX LONG_MAX # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 3 4 #define _BITS_POSIX2_LIM_H 1 #define _POSIX2_BC_BASE_MAX 99 #define _POSIX2_BC_DIM_MAX 2048 #define _POSIX2_BC_SCALE_MAX 99 #define _POSIX2_BC_STRING_MAX 1000 #define _POSIX2_COLL_WEIGHTS_MAX 2 #define _POSIX2_EXPR_NEST_MAX 32 #define _POSIX2_LINE_MAX 2048 #define _POSIX2_RE_DUP_MAX 255 #define _POSIX2_CHARCLASS_NAME_MAX 14 #define BC_BASE_MAX _POSIX2_BC_BASE_MAX #define BC_DIM_MAX _POSIX2_BC_DIM_MAX #define BC_SCALE_MAX _POSIX2_BC_SCALE_MAX #define BC_STRING_MAX _POSIX2_BC_STRING_MAX #define COLL_WEIGHTS_MAX 255 #define EXPR_NEST_MAX _POSIX2_EXPR_NEST_MAX #define LINE_MAX _POSIX2_LINE_MAX #define CHARCLASS_NAME_MAX 2048 #define RE_DUP_MAX (0x7fff) # 150 "/usr/include/limits.h" 2 3 4 # 170 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/syslimits.h" 2 3 4 #undef _GCC_NEXT_LIMITS_H # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 2 3 4 # 61 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 #define _LIMITS_H___ #undef CHAR_BIT #define CHAR_BIT __CHAR_BIT__ #undef SCHAR_MIN #define SCHAR_MIN (-SCHAR_MAX - 1) #undef SCHAR_MAX #define SCHAR_MAX __SCHAR_MAX__ #undef UCHAR_MAX #define UCHAR_MAX (SCHAR_MAX * 2 + 1) # 97 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include-fixed/limits.h" 3 4 #undef CHAR_MIN #define CHAR_MIN SCHAR_MIN #undef CHAR_MAX #define CHAR_MAX SCHAR_MAX #undef SHRT_MIN #define SHRT_MIN (-SHRT_MAX - 1) #undef SHRT_MAX #define SHRT_MAX __SHRT_MAX__ #undef USHRT_MAX #define USHRT_MAX (SHRT_MAX * 2 + 1) #undef INT_MIN #define INT_MIN (-INT_MAX - 1) #undef INT_MAX #define INT_MAX __INT_MAX__ #undef UINT_MAX #define UINT_MAX (INT_MAX * 2U + 1U) #undef LONG_MIN #define LONG_MIN (-LONG_MAX - 1L) #undef LONG_MAX #define LONG_MAX __LONG_MAX__ #undef ULONG_MAX #define ULONG_MAX (LONG_MAX * 2UL + 1UL) # 135 "/usr/include/openssl/bn.h" 2 3 4 # 153 "/usr/include/openssl/bn.h" 3 4 #define BN_MUL_COMBA #define BN_SQR_COMBA #define BN_RECURSION # 172 "/usr/include/openssl/bn.h" 3 4 #define BN_DIV2W #define BN_ULLONG unsigned long long #define BN_ULONG unsigned long #define BN_LONG long #define BN_BITS 128 #define BN_BYTES 8 #define BN_BITS2 64 #define BN_BITS4 32 #define BN_MASK (0xffffffffffffffffffffffffffffffffLL) #define BN_MASK2 (0xffffffffffffffffL) #define BN_MASK2l (0xffffffffL) #define BN_MASK2h (0xffffffff00000000L) #define BN_MASK2h1 (0xffffffff80000000L) #define BN_TBIT (0x8000000000000000L) #define BN_DEC_CONV (10000000000000000000UL) #define BN_DEC_FMT1 "%lu" #define BN_DEC_FMT2 "%019lu" #define BN_DEC_NUM 19 #define BN_HEX_FMT1 "%lX" #define BN_HEX_FMT2 "%016lX" # 272 "/usr/include/openssl/bn.h" 3 4 #define PTR_SIZE_INT size_t #define BN_DEFAULT_BITS 1280 #define BN_FLG_MALLOCED 0x01 #define BN_FLG_STATIC_DATA 0x02 #define BN_FLG_CONSTTIME 0x04 #define BN_FLG_EXP_CONSTTIME BN_FLG_CONSTTIME #define BN_FLG_FREE 0x8000 #define BN_set_flags(b,n) ((b)->flags|=(n)) #define BN_get_flags(b,n) ((b)->flags&(n)) #define BN_with_flags(dest,b,n) ((dest)->d=(b)->d, (dest)->top=(b)->top, (dest)->dmax=(b)->dmax, (dest)->neg=(b)->neg, (dest)->flags=(((dest)->flags & BN_FLG_MALLOCED) | ((b)->flags & ~BN_FLG_MALLOCED) | BN_FLG_STATIC_DATA | (n))) # 319 "/usr/include/openssl/bn.h" 3 4 struct bignum_st { unsigned long *d; int top; int dmax; int neg; int flags; }; struct bn_mont_ctx_st { int ri; BIGNUM RR; BIGNUM N; BIGNUM Ni; unsigned long n0[2]; int flags; }; struct bn_recp_ctx_st { BIGNUM N; BIGNUM Nr; int num_bits; int shift; int flags; }; struct bn_gencb_st { unsigned int ver; void *arg; union { void (*cb_1)(int, int, void *); int (*cb_2)(int, int, BN_GENCB *); } cb; }; int BN_GENCB_call(BN_GENCB *cb, int a, int b); #define BN_GENCB_set_old(gencb,callback,cb_arg) { BN_GENCB *tmp_gencb = (gencb); tmp_gencb->ver = 1; tmp_gencb->arg = (cb_arg); tmp_gencb->cb.cb_1 = (callback); } #define BN_GENCB_set(gencb,callback,cb_arg) { BN_GENCB *tmp_gencb = (gencb); tmp_gencb->ver = 2; tmp_gencb->arg = (cb_arg); tmp_gencb->cb.cb_2 = (callback); } #define BN_prime_checks 0 #define BN_prime_checks_for_size(b) ((b) >= 1300 ? 2 : (b) >= 850 ? 3 : (b) >= 650 ? 4 : (b) >= 550 ? 5 : (b) >= 450 ? 6 : (b) >= 400 ? 7 : (b) >= 350 ? 8 : (b) >= 300 ? 9 : (b) >= 250 ? 12 : (b) >= 200 ? 15 : (b) >= 150 ? 18 : 27) # 403 "/usr/include/openssl/bn.h" 3 4 #define BN_num_bytes(a) ((BN_num_bits(a)+7)/8) #define BN_abs_is_word(a,w) ((((a)->top == 1) && ((a)->d[0] == (BN_ULONG)(w))) || (((w) == 0) && ((a)->top == 0))) #define BN_is_zero(a) ((a)->top == 0) #define BN_is_one(a) (BN_abs_is_word((a),1) && !(a)->neg) #define BN_is_word(a,w) (BN_abs_is_word((a),(w)) && (!(w) || !(a)->neg)) #define BN_is_odd(a) (((a)->top > 0) && ((a)->d[0] & 1)) #define BN_one(a) (BN_set_word((a),1)) #define BN_zero_ex(a) do { BIGNUM *_tmp_bn = (a); _tmp_bn->top = 0; _tmp_bn->neg = 0; } while(0) # 423 "/usr/include/openssl/bn.h" 3 4 #define BN_zero(a) (BN_set_word((a),0)) const BIGNUM *BN_value_one(void); char * BN_options(void); BN_CTX *BN_CTX_new(void); void BN_CTX_init(BN_CTX *c); void BN_CTX_free(BN_CTX *c); void BN_CTX_start(BN_CTX *ctx); BIGNUM *BN_CTX_get(BN_CTX *ctx); void BN_CTX_end(BN_CTX *ctx); int BN_rand(BIGNUM *rnd, int bits, int top,int bottom); int BN_pseudo_rand(BIGNUM *rnd, int bits, int top,int bottom); int BN_rand_range(BIGNUM *rnd, const BIGNUM *range); int BN_pseudo_rand_range(BIGNUM *rnd, const BIGNUM *range); int BN_num_bits(const BIGNUM *a); int BN_num_bits_word(unsigned long); BIGNUM *BN_new(void); void BN_init(BIGNUM *); void BN_clear_free(BIGNUM *a); BIGNUM *BN_copy(BIGNUM *a, const BIGNUM *b); void BN_swap(BIGNUM *a, BIGNUM *b); BIGNUM *BN_bin2bn(const unsigned char *s,int len,BIGNUM *ret); int BN_bn2bin(const BIGNUM *a, unsigned char *to); BIGNUM *BN_mpi2bn(const unsigned char *s,int len,BIGNUM *ret); int BN_bn2mpi(const BIGNUM *a, unsigned char *to); int BN_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_usub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_uadd(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); int BN_sqr(BIGNUM *r, const BIGNUM *a,BN_CTX *ctx); void BN_set_negative(BIGNUM *b, int n); #define BN_is_negative(a) ((a)->neg != 0) int BN_div(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx); #define BN_mod(rem,m,d,ctx) BN_div(NULL,(rem),(m),(d),(ctx)) int BN_nnmod(BIGNUM *r, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx); int BN_mod_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_add_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m); int BN_mod_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_sub_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m); int BN_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift1(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift1_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *m); int BN_mod_lshift(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift_quick(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m); unsigned long BN_mod_word(const BIGNUM *a, unsigned long w); unsigned long BN_div_word(BIGNUM *a, unsigned long w); int BN_mul_word(BIGNUM *a, unsigned long w); int BN_add_word(BIGNUM *a, unsigned long w); int BN_sub_word(BIGNUM *a, unsigned long w); int BN_set_word(BIGNUM *a, unsigned long w); unsigned long BN_get_word(const BIGNUM *a); int BN_cmp(const BIGNUM *a, const BIGNUM *b); void BN_free(BIGNUM *a); int BN_is_bit_set(const BIGNUM *a, int n); int BN_lshift(BIGNUM *r, const BIGNUM *a, int n); int BN_lshift1(BIGNUM *r, const BIGNUM *a); int BN_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p,BN_CTX *ctx); int BN_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx); int BN_mod_exp_mont(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int BN_mod_exp_mont_consttime(BIGNUM *rr, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont); int BN_mod_exp_mont_word(BIGNUM *r, unsigned long a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int BN_mod_exp2_mont(BIGNUM *r, const BIGNUM *a1, const BIGNUM *p1, const BIGNUM *a2, const BIGNUM *p2,const BIGNUM *m, BN_CTX *ctx,BN_MONT_CTX *m_ctx); int BN_mod_exp_simple(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx); int BN_mask_bits(BIGNUM *a,int n); int BN_print_fp(FILE *fp, const BIGNUM *a); int BN_print(BIO *fp, const BIGNUM *a); int BN_reciprocal(BIGNUM *r, const BIGNUM *m, int len, BN_CTX *ctx); int BN_rshift(BIGNUM *r, const BIGNUM *a, int n); int BN_rshift1(BIGNUM *r, const BIGNUM *a); void BN_clear(BIGNUM *a); BIGNUM *BN_dup(const BIGNUM *a); int BN_ucmp(const BIGNUM *a, const BIGNUM *b); int BN_set_bit(BIGNUM *a, int n); int BN_clear_bit(BIGNUM *a, int n); char * BN_bn2hex(const BIGNUM *a); char * BN_bn2dec(const BIGNUM *a); int BN_hex2bn(BIGNUM **a, const char *str); int BN_dec2bn(BIGNUM **a, const char *str); int BN_asc2bn(BIGNUM **a, const char *str); int BN_gcd(BIGNUM *r,const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx); int BN_kronecker(const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx); BIGNUM *BN_mod_inverse(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx); BIGNUM *BN_mod_sqrt(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx); void BN_consttime_swap(unsigned long swap, BIGNUM *a, BIGNUM *b, int nwords); BIGNUM *BN_generate_prime(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, void (*callback)(int,int,void *),void *cb_arg); int BN_is_prime(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *), BN_CTX *ctx,void *cb_arg); int BN_is_prime_fasttest(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *),BN_CTX *ctx,void *cb_arg, int do_trial_division); int BN_generate_prime_ex(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, BN_GENCB *cb); int BN_is_prime_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, BN_GENCB *cb); int BN_is_prime_fasttest_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, int do_trial_division, BN_GENCB *cb); int BN_X931_generate_Xpq(BIGNUM *Xp, BIGNUM *Xq, int nbits, BN_CTX *ctx); int BN_X931_derive_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, const BIGNUM *Xp, const BIGNUM *Xp1, const BIGNUM *Xp2, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb); int BN_X931_generate_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, BIGNUM *Xp1, BIGNUM *Xp2, const BIGNUM *Xp, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb); BN_MONT_CTX *BN_MONT_CTX_new(void ); void BN_MONT_CTX_init(BN_MONT_CTX *ctx); int BN_mod_mul_montgomery(BIGNUM *r,const BIGNUM *a,const BIGNUM *b, BN_MONT_CTX *mont, BN_CTX *ctx); #define BN_to_montgomery(r,a,mont,ctx) BN_mod_mul_montgomery( (r),(a),&((mont)->RR),(mont),(ctx)) int BN_from_montgomery(BIGNUM *r,const BIGNUM *a, BN_MONT_CTX *mont, BN_CTX *ctx); void BN_MONT_CTX_free(BN_MONT_CTX *mont); int BN_MONT_CTX_set(BN_MONT_CTX *mont,const BIGNUM *mod,BN_CTX *ctx); BN_MONT_CTX *BN_MONT_CTX_copy(BN_MONT_CTX *to,BN_MONT_CTX *from); BN_MONT_CTX *BN_MONT_CTX_set_locked(BN_MONT_CTX **pmont, int lock, const BIGNUM *mod, BN_CTX *ctx); #define BN_BLINDING_NO_UPDATE 0x00000001 #define BN_BLINDING_NO_RECREATE 0x00000002 BN_BLINDING *BN_BLINDING_new(const BIGNUM *A, const BIGNUM *Ai, BIGNUM *mod); void BN_BLINDING_free(BN_BLINDING *b); int BN_BLINDING_update(BN_BLINDING *b,BN_CTX *ctx); int BN_BLINDING_convert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx); int BN_BLINDING_invert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx); int BN_BLINDING_convert_ex(BIGNUM *n, BIGNUM *r, BN_BLINDING *b, BN_CTX *); int BN_BLINDING_invert_ex(BIGNUM *n, const BIGNUM *r, BN_BLINDING *b, BN_CTX *); unsigned long BN_BLINDING_get_thread_id(const BN_BLINDING *); void BN_BLINDING_set_thread_id(BN_BLINDING *, unsigned long); CRYPTO_THREADID *BN_BLINDING_thread_id(BN_BLINDING *); unsigned long BN_BLINDING_get_flags(const BN_BLINDING *); void BN_BLINDING_set_flags(BN_BLINDING *, unsigned long); BN_BLINDING *BN_BLINDING_create_param(BN_BLINDING *b, const BIGNUM *e, BIGNUM *m, BN_CTX *ctx, int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx), BN_MONT_CTX *m_ctx); void BN_set_params(int mul,int high,int low,int mont); int BN_get_params(int which); void BN_RECP_CTX_init(BN_RECP_CTX *recp); BN_RECP_CTX *BN_RECP_CTX_new(void); void BN_RECP_CTX_free(BN_RECP_CTX *recp); int BN_RECP_CTX_set(BN_RECP_CTX *recp,const BIGNUM *rdiv,BN_CTX *ctx); int BN_mod_mul_reciprocal(BIGNUM *r, const BIGNUM *x, const BIGNUM *y, BN_RECP_CTX *recp,BN_CTX *ctx); int BN_mod_exp_recp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx); int BN_div_recp(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, BN_RECP_CTX *recp, BN_CTX *ctx); # 640 "/usr/include/openssl/bn.h" 3 4 int BN_GF2m_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); #define BN_GF2m_sub(r,a,b) BN_GF2m_add(r, a, b) int BN_GF2m_mod(BIGNUM *r, const BIGNUM *a, const BIGNUM *p); int BN_GF2m_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_inv(BIGNUM *r, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_div(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_sqrt(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_solve_quad(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); #define BN_GF2m_cmp(a,b) BN_ucmp((a), (b)) int BN_GF2m_mod_arr(BIGNUM *r, const BIGNUM *a, const int p[]); int BN_GF2m_mod_mul_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_sqr_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_mod_inv_arr(BIGNUM *r, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_div_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_exp_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_sqrt_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_mod_solve_quad_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_poly2arr(const BIGNUM *a, int p[], int max); int BN_GF2m_arr2poly(const int p[], BIGNUM *a); int BN_nist_mod_192(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_224(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_256(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_384(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_521(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); const BIGNUM *BN_get0_nist_prime_192(void); const BIGNUM *BN_get0_nist_prime_224(void); const BIGNUM *BN_get0_nist_prime_256(void); const BIGNUM *BN_get0_nist_prime_384(void); const BIGNUM *BN_get0_nist_prime_521(void); #define bn_expand(a,bits) ( bits > (INT_MAX - BN_BITS2 + 1) ? NULL : (((bits+BN_BITS2-1)/BN_BITS2) <= (a)->dmax) ? (a) : bn_expand2((a),(bits+BN_BITS2-1)/BN_BITS2) ) # 711 "/usr/include/openssl/bn.h" 3 4 #define bn_wexpand(a,words) (((words) <= (a)->dmax)?(a):bn_expand2((a),(words))) BIGNUM *bn_expand2(BIGNUM *a, int words); BIGNUM *bn_dup_expand(const BIGNUM *a, int words); # 798 "/usr/include/openssl/bn.h" 3 4 #define bn_pollute(a) #define bn_check_top(a) #define bn_fix_top(a) bn_correct_top(a) #define bn_check_size(bn,bits) #define bn_wcheck_size(bn,words) #define bn_correct_top(a) { BN_ULONG *ftl; int tmp_top = (a)->top; if (tmp_top > 0) { for (ftl= &((a)->d[tmp_top-1]); tmp_top > 0; tmp_top--) if (*(ftl--)) break; (a)->top = tmp_top; } bn_pollute(a); } # 819 "/usr/include/openssl/bn.h" 3 4 unsigned long bn_mul_add_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w); unsigned long bn_mul_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w); void bn_sqr_words(unsigned long *rp, const unsigned long *ap, int num); unsigned long bn_div_words(unsigned long h, unsigned long l, unsigned long d); unsigned long bn_add_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num); unsigned long bn_sub_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num); BIGNUM *get_rfc2409_prime_768(BIGNUM *bn); BIGNUM *get_rfc2409_prime_1024(BIGNUM *bn); BIGNUM *get_rfc3526_prime_1536(BIGNUM *bn); BIGNUM *get_rfc3526_prime_2048(BIGNUM *bn); BIGNUM *get_rfc3526_prime_3072(BIGNUM *bn); BIGNUM *get_rfc3526_prime_4096(BIGNUM *bn); BIGNUM *get_rfc3526_prime_6144(BIGNUM *bn); BIGNUM *get_rfc3526_prime_8192(BIGNUM *bn); int BN_bntest_rand(BIGNUM *rnd, int bits, int top,int bottom); void ERR_load_BN_strings(void); #define BN_F_BNRAND 127 #define BN_F_BN_BLINDING_CONVERT_EX 100 #define BN_F_BN_BLINDING_CREATE_PARAM 128 #define BN_F_BN_BLINDING_INVERT_EX 101 #define BN_F_BN_BLINDING_NEW 102 #define BN_F_BN_BLINDING_UPDATE 103 #define BN_F_BN_BN2DEC 104 #define BN_F_BN_BN2HEX 105 #define BN_F_BN_CTX_GET 116 #define BN_F_BN_CTX_NEW 106 #define BN_F_BN_CTX_START 129 #define BN_F_BN_DIV 107 #define BN_F_BN_DIV_NO_BRANCH 138 #define BN_F_BN_DIV_RECP 130 #define BN_F_BN_EXP 123 #define BN_F_BN_EXPAND2 108 #define BN_F_BN_EXPAND_INTERNAL 120 #define BN_F_BN_GF2M_MOD 131 #define BN_F_BN_GF2M_MOD_EXP 132 #define BN_F_BN_GF2M_MOD_MUL 133 #define BN_F_BN_GF2M_MOD_SOLVE_QUAD 134 #define BN_F_BN_GF2M_MOD_SOLVE_QUAD_ARR 135 #define BN_F_BN_GF2M_MOD_SQR 136 #define BN_F_BN_GF2M_MOD_SQRT 137 #define BN_F_BN_MOD_EXP2_MONT 118 #define BN_F_BN_MOD_EXP_MONT 109 #define BN_F_BN_MOD_EXP_MONT_CONSTTIME 124 #define BN_F_BN_MOD_EXP_MONT_WORD 117 #define BN_F_BN_MOD_EXP_RECP 125 #define BN_F_BN_MOD_EXP_SIMPLE 126 #define BN_F_BN_MOD_INVERSE 110 #define BN_F_BN_MOD_INVERSE_NO_BRANCH 139 #define BN_F_BN_MOD_LSHIFT_QUICK 119 #define BN_F_BN_MOD_MUL_RECIPROCAL 111 #define BN_F_BN_MOD_SQRT 121 #define BN_F_BN_MPI2BN 112 #define BN_F_BN_NEW 113 #define BN_F_BN_RAND 114 #define BN_F_BN_RAND_RANGE 122 #define BN_F_BN_USUB 115 #define BN_R_ARG2_LT_ARG3 100 #define BN_R_BAD_RECIPROCAL 101 #define BN_R_BIGNUM_TOO_LONG 114 #define BN_R_CALLED_WITH_EVEN_MODULUS 102 #define BN_R_DIV_BY_ZERO 103 #define BN_R_ENCODING_ERROR 104 #define BN_R_EXPAND_ON_STATIC_BIGNUM_DATA 105 #define BN_R_INPUT_NOT_REDUCED 110 #define BN_R_INVALID_LENGTH 106 #define BN_R_INVALID_RANGE 115 #define BN_R_NOT_A_SQUARE 111 #define BN_R_NOT_INITIALIZED 107 #define BN_R_NO_INVERSE 108 #define BN_R_NO_SOLUTION 116 #define BN_R_P_IS_NOT_PRIME 112 #define BN_R_TOO_MANY_ITERATIONS 113 #define BN_R_TOO_MANY_TEMPORARY_VARIABLES 109 # 75 "/usr/include/openssl/asn1.h" 2 3 4 # 86 "/usr/include/openssl/asn1.h" 3 4 #define V_ASN1_UNIVERSAL 0x00 #define V_ASN1_APPLICATION 0x40 #define V_ASN1_CONTEXT_SPECIFIC 0x80 #define V_ASN1_PRIVATE 0xc0 #define V_ASN1_CONSTRUCTED 0x20 #define V_ASN1_PRIMITIVE_TAG 0x1f #define V_ASN1_PRIMATIVE_TAG 0x1f #define V_ASN1_APP_CHOOSE -2 #define V_ASN1_OTHER -3 #define V_ASN1_ANY -4 #define V_ASN1_UNDEF -1 #define V_ASN1_EOC 0 #define V_ASN1_BOOLEAN 1 #define V_ASN1_INTEGER 2 #define V_ASN1_BIT_STRING 3 #define V_ASN1_OCTET_STRING 4 #define V_ASN1_NULL 5 #define V_ASN1_OBJECT 6 #define V_ASN1_OBJECT_DESCRIPTOR 7 #define V_ASN1_EXTERNAL 8 #define V_ASN1_REAL 9 #define V_ASN1_ENUMERATED 10 #define V_ASN1_UTF8STRING 12 #define V_ASN1_SEQUENCE 16 #define V_ASN1_SET 17 #define V_ASN1_NUMERICSTRING 18 #define V_ASN1_PRINTABLESTRING 19 #define V_ASN1_T61STRING 20 #define V_ASN1_TELETEXSTRING 20 #define V_ASN1_VIDEOTEXSTRING 21 #define V_ASN1_IA5STRING 22 #define V_ASN1_UTCTIME 23 #define V_ASN1_GENERALIZEDTIME 24 #define V_ASN1_GRAPHICSTRING 25 #define V_ASN1_ISO64STRING 26 #define V_ASN1_VISIBLESTRING 26 #define V_ASN1_GENERALSTRING 27 #define V_ASN1_UNIVERSALSTRING 28 #define V_ASN1_BMPSTRING 30 #define V_ASN1_NEG 0x100 #define V_ASN1_NEG_INTEGER (2 | V_ASN1_NEG) #define V_ASN1_NEG_ENUMERATED (10 | V_ASN1_NEG) #define B_ASN1_NUMERICSTRING 0x0001 #define B_ASN1_PRINTABLESTRING 0x0002 #define B_ASN1_T61STRING 0x0004 #define B_ASN1_TELETEXSTRING 0x0004 #define B_ASN1_VIDEOTEXSTRING 0x0008 #define B_ASN1_IA5STRING 0x0010 #define B_ASN1_GRAPHICSTRING 0x0020 #define B_ASN1_ISO64STRING 0x0040 #define B_ASN1_VISIBLESTRING 0x0040 #define B_ASN1_GENERALSTRING 0x0080 #define B_ASN1_UNIVERSALSTRING 0x0100 #define B_ASN1_OCTET_STRING 0x0200 #define B_ASN1_BIT_STRING 0x0400 #define B_ASN1_BMPSTRING 0x0800 #define B_ASN1_UNKNOWN 0x1000 #define B_ASN1_UTF8STRING 0x2000 #define B_ASN1_UTCTIME 0x4000 #define B_ASN1_GENERALIZEDTIME 0x8000 #define B_ASN1_SEQUENCE 0x10000 #define MBSTRING_FLAG 0x1000 #define MBSTRING_UTF8 (MBSTRING_FLAG) #define MBSTRING_ASC (MBSTRING_FLAG|1) #define MBSTRING_BMP (MBSTRING_FLAG|2) #define MBSTRING_UNIV (MBSTRING_FLAG|4) #define SMIME_OLDMIME 0x400 #define SMIME_CRLFEOL 0x800 #define SMIME_STREAM 0x1000 struct X509_algor_st; struct stack_st_X509_ALGOR { _STACK stack; }; #define DECLARE_ASN1_SET_OF(type) #define IMPLEMENT_ASN1_SET_OF(type) typedef struct asn1_ctx_st { unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; unsigned char *max; unsigned char *q; unsigned char **pp; int line; } ASN1_CTX; typedef struct asn1_const_ctx_st { const unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; const unsigned char *max; const unsigned char *q; const unsigned char **pp; int line; } ASN1_const_CTX; #define ASN1_OBJECT_FLAG_DYNAMIC 0x01 #define ASN1_OBJECT_FLAG_CRITICAL 0x02 #define ASN1_OBJECT_FLAG_DYNAMIC_STRINGS 0x04 #define ASN1_OBJECT_FLAG_DYNAMIC_DATA 0x08 typedef struct asn1_object_st { const char *sn,*ln; int nid; int length; const unsigned char *data; int flags; } ASN1_OBJECT; #define ASN1_STRING_FLAG_BITS_LEFT 0x08 #define ASN1_STRING_FLAG_NDEF 0x010 #define ASN1_STRING_FLAG_CONT 0x020 #define ASN1_STRING_FLAG_MSTRING 0x040 struct asn1_string_st { int length; int type; unsigned char *data; long flags; }; typedef struct ASN1_ENCODING_st { unsigned char *enc; long len; int modified; } ASN1_ENCODING; #define ASN1_LONG_UNDEF 0x7fffffffL #define STABLE_FLAGS_MALLOC 0x01 #define STABLE_NO_MASK 0x02 #define DIRSTRING_TYPE (B_ASN1_PRINTABLESTRING|B_ASN1_T61STRING|B_ASN1_BMPSTRING|B_ASN1_UTF8STRING) #define PKCS9STRING_TYPE (DIRSTRING_TYPE|B_ASN1_IA5STRING) typedef struct asn1_string_table_st { int nid; long minsize; long maxsize; unsigned long mask; unsigned long flags; } ASN1_STRING_TABLE; struct stack_st_ASN1_STRING_TABLE { _STACK stack; }; #define ub_name 32768 #define ub_common_name 64 #define ub_locality_name 128 #define ub_state_name 128 #define ub_organization_name 64 #define ub_organization_unit_name 64 #define ub_title 64 #define ub_email_address 128 typedef struct ASN1_TEMPLATE_st ASN1_TEMPLATE; typedef struct ASN1_TLC_st ASN1_TLC; typedef struct ASN1_VALUE_st ASN1_VALUE; #define DECLARE_ASN1_FUNCTIONS(type) DECLARE_ASN1_FUNCTIONS_name(type, type) #define DECLARE_ASN1_ALLOC_FUNCTIONS(type) DECLARE_ASN1_ALLOC_FUNCTIONS_name(type, type) #define DECLARE_ASN1_FUNCTIONS_name(type,name) DECLARE_ASN1_ALLOC_FUNCTIONS_name(type, name) DECLARE_ASN1_ENCODE_FUNCTIONS(type, name, name) #define DECLARE_ASN1_FUNCTIONS_fname(type,itname,name) DECLARE_ASN1_ALLOC_FUNCTIONS_name(type, name) DECLARE_ASN1_ENCODE_FUNCTIONS(type, itname, name) #define DECLARE_ASN1_ENCODE_FUNCTIONS(type,itname,name) type *d2i_ ##name(type **a, const unsigned char **in, long len); int i2d_ ##name(type *a, unsigned char **out); DECLARE_ASN1_ITEM(itname) #define DECLARE_ASN1_ENCODE_FUNCTIONS_const(type,name) type *d2i_ ##name(type **a, const unsigned char **in, long len); int i2d_ ##name(const type *a, unsigned char **out); DECLARE_ASN1_ITEM(name) #define DECLARE_ASN1_NDEF_FUNCTION(name) int i2d_ ##name ##_NDEF(name *a, unsigned char **out); #define DECLARE_ASN1_FUNCTIONS_const(name) DECLARE_ASN1_ALLOC_FUNCTIONS(name) DECLARE_ASN1_ENCODE_FUNCTIONS_const(name, name) #define DECLARE_ASN1_ALLOC_FUNCTIONS_name(type,name) type *name ##_new(void); void name ##_free(type *a); #define DECLARE_ASN1_PRINT_FUNCTION(stname) DECLARE_ASN1_PRINT_FUNCTION_fname(stname, stname) #define DECLARE_ASN1_PRINT_FUNCTION_fname(stname,fname) int fname ##_print_ctx(BIO *out, stname *x, int indent, const ASN1_PCTX *pctx); #define D2I_OF(type) type *(*)(type **,const unsigned char **,long) #define I2D_OF(type) int (*)(type *,unsigned char **) #define I2D_OF_const(type) int (*)(const type *,unsigned char **) #define CHECKED_D2I_OF(type,d2i) ((d2i_of_void*) (1 ? d2i : ((D2I_OF(type))0))) #define CHECKED_I2D_OF(type,i2d) ((i2d_of_void*) (1 ? i2d : ((I2D_OF(type))0))) #define CHECKED_NEW_OF(type,xnew) ((void *(*)(void)) (1 ? xnew : ((type *(*)(void))0))) #define CHECKED_PTR_OF(type,p) ((void*) (1 ? p : (type*)0)) #define CHECKED_PPTR_OF(type,p) ((void**) (1 ? p : (type**)0)) #define TYPEDEF_D2I_OF(type) typedef type *d2i_of_ ##type(type **,const unsigned char **,long) #define TYPEDEF_I2D_OF(type) typedef int i2d_of_ ##type(type *,unsigned char **) #define TYPEDEF_D2I2D_OF(type) TYPEDEF_D2I_OF(type); TYPEDEF_I2D_OF(type) typedef void *d2i_of_void(void **,const unsigned char **,long); typedef int i2d_of_void(void *,unsigned char **); # 409 "/usr/include/openssl/asn1.h" 3 4 typedef const ASN1_ITEM ASN1_ITEM_EXP; #define ASN1_ITEM_ptr(iptr) (iptr) #define ASN1_ITEM_ref(iptr) (&(iptr ##_it)) #define ASN1_ITEM_rptr(ref) (&(ref ##_it)) #define DECLARE_ASN1_ITEM(name) OPENSSL_EXTERN const ASN1_ITEM name ##_it; # 451 "/usr/include/openssl/asn1.h" 3 4 #define ASN1_STRFLGS_ESC_2253 1 #define ASN1_STRFLGS_ESC_CTRL 2 #define ASN1_STRFLGS_ESC_MSB 4 #define ASN1_STRFLGS_ESC_QUOTE 8 #define CHARTYPE_PRINTABLESTRING 0x10 #define CHARTYPE_FIRST_ESC_2253 0x20 #define CHARTYPE_LAST_ESC_2253 0x40 # 481 "/usr/include/openssl/asn1.h" 3 4 #define ASN1_STRFLGS_UTF8_CONVERT 0x10 #define ASN1_STRFLGS_IGNORE_TYPE 0x20 #define ASN1_STRFLGS_SHOW_TYPE 0x40 # 501 "/usr/include/openssl/asn1.h" 3 4 #define ASN1_STRFLGS_DUMP_ALL 0x80 #define ASN1_STRFLGS_DUMP_UNKNOWN 0x100 #define ASN1_STRFLGS_DUMP_DER 0x200 #define ASN1_STRFLGS_RFC2253 (ASN1_STRFLGS_ESC_2253 | ASN1_STRFLGS_ESC_CTRL | ASN1_STRFLGS_ESC_MSB | ASN1_STRFLGS_UTF8_CONVERT | ASN1_STRFLGS_DUMP_UNKNOWN | ASN1_STRFLGS_DUMP_DER) struct stack_st_ASN1_INTEGER { _STACK stack; }; struct stack_st_ASN1_GENERALSTRING { _STACK stack; }; typedef struct asn1_type_st { int type; union { char *ptr; ASN1_BOOLEAN boolean; ASN1_STRING * asn1_string; ASN1_OBJECT * object; ASN1_INTEGER * integer; ASN1_ENUMERATED * enumerated; ASN1_BIT_STRING * bit_string; ASN1_OCTET_STRING * octet_string; ASN1_PRINTABLESTRING * printablestring; ASN1_T61STRING * t61string; ASN1_IA5STRING * ia5string; ASN1_GENERALSTRING * generalstring; ASN1_BMPSTRING * bmpstring; ASN1_UNIVERSALSTRING * universalstring; ASN1_UTCTIME * utctime; ASN1_GENERALIZEDTIME * generalizedtime; ASN1_VISIBLESTRING * visiblestring; ASN1_UTF8STRING * utf8string; ASN1_STRING * set; ASN1_STRING * sequence; ASN1_VALUE * asn1_value; } value; } ASN1_TYPE; struct stack_st_ASN1_TYPE { _STACK stack; }; typedef struct stack_st_ASN1_TYPE ASN1_SEQUENCE_ANY; ASN1_SEQUENCE_ANY *d2i_ASN1_SEQUENCE_ANY(ASN1_SEQUENCE_ANY **a, const unsigned char **in, long len); int i2d_ASN1_SEQUENCE_ANY(const ASN1_SEQUENCE_ANY *a, unsigned char **out); extern const ASN1_ITEM ASN1_SEQUENCE_ANY_it; ASN1_SEQUENCE_ANY *d2i_ASN1_SET_ANY(ASN1_SEQUENCE_ANY **a, const unsigned char **in, long len); int i2d_ASN1_SET_ANY(const ASN1_SEQUENCE_ANY *a, unsigned char **out); extern const ASN1_ITEM ASN1_SET_ANY_it; typedef struct NETSCAPE_X509_st { ASN1_OCTET_STRING *header; X509 *cert; } NETSCAPE_X509; typedef struct BIT_STRING_BITNAME_st { int bitnum; const char *lname; const char *sname; } BIT_STRING_BITNAME; #define M_ASN1_STRING_length(x) ((x)->length) #define M_ASN1_STRING_length_set(x,n) ((x)->length = (n)) #define M_ASN1_STRING_type(x) ((x)->type) #define M_ASN1_STRING_data(x) ((x)->data) #define M_ASN1_BIT_STRING_new() (ASN1_BIT_STRING *) ASN1_STRING_type_new(V_ASN1_BIT_STRING) #define M_ASN1_BIT_STRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_ASN1_BIT_STRING_dup(a) (ASN1_BIT_STRING *) ASN1_STRING_dup((const ASN1_STRING *)a) #define M_ASN1_BIT_STRING_cmp(a,b) ASN1_STRING_cmp( (const ASN1_STRING *)a,(const ASN1_STRING *)b) #define M_ASN1_BIT_STRING_set(a,b,c) ASN1_STRING_set((ASN1_STRING *)a,b,c) #define M_ASN1_INTEGER_new() (ASN1_INTEGER *) ASN1_STRING_type_new(V_ASN1_INTEGER) #define M_ASN1_INTEGER_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_ASN1_INTEGER_dup(a) (ASN1_INTEGER *) ASN1_STRING_dup((const ASN1_STRING *)a) #define M_ASN1_INTEGER_cmp(a,b) ASN1_STRING_cmp( (const ASN1_STRING *)a,(const ASN1_STRING *)b) #define M_ASN1_ENUMERATED_new() (ASN1_ENUMERATED *) ASN1_STRING_type_new(V_ASN1_ENUMERATED) #define M_ASN1_ENUMERATED_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_ASN1_ENUMERATED_dup(a) (ASN1_ENUMERATED *) ASN1_STRING_dup((const ASN1_STRING *)a) #define M_ASN1_ENUMERATED_cmp(a,b) ASN1_STRING_cmp( (const ASN1_STRING *)a,(const ASN1_STRING *)b) #define M_ASN1_OCTET_STRING_new() (ASN1_OCTET_STRING *) ASN1_STRING_type_new(V_ASN1_OCTET_STRING) #define M_ASN1_OCTET_STRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_ASN1_OCTET_STRING_dup(a) (ASN1_OCTET_STRING *) ASN1_STRING_dup((const ASN1_STRING *)a) #define M_ASN1_OCTET_STRING_cmp(a,b) ASN1_STRING_cmp( (const ASN1_STRING *)a,(const ASN1_STRING *)b) #define M_ASN1_OCTET_STRING_set(a,b,c) ASN1_STRING_set((ASN1_STRING *)a,b,c) #define M_ASN1_OCTET_STRING_print(a,b) ASN1_STRING_print(a,(ASN1_STRING *)b) #define M_i2d_ASN1_OCTET_STRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_OCTET_STRING, V_ASN1_UNIVERSAL) #define B_ASN1_TIME B_ASN1_UTCTIME | B_ASN1_GENERALIZEDTIME #define B_ASN1_PRINTABLE B_ASN1_NUMERICSTRING| B_ASN1_PRINTABLESTRING| B_ASN1_T61STRING| B_ASN1_IA5STRING| B_ASN1_BIT_STRING| B_ASN1_UNIVERSALSTRING| B_ASN1_BMPSTRING| B_ASN1_UTF8STRING| B_ASN1_SEQUENCE| B_ASN1_UNKNOWN # 640 "/usr/include/openssl/asn1.h" 3 4 #define B_ASN1_DIRECTORYSTRING B_ASN1_PRINTABLESTRING| B_ASN1_TELETEXSTRING| B_ASN1_BMPSTRING| B_ASN1_UNIVERSALSTRING| B_ASN1_UTF8STRING #define B_ASN1_DISPLAYTEXT B_ASN1_IA5STRING| B_ASN1_VISIBLESTRING| B_ASN1_BMPSTRING| B_ASN1_UTF8STRING #define M_ASN1_PRINTABLE_new() ASN1_STRING_type_new(V_ASN1_T61STRING) #define M_ASN1_PRINTABLE_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_ASN1_PRINTABLE(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a, pp,a->type,V_ASN1_UNIVERSAL) #define M_d2i_ASN1_PRINTABLE(a,pp,l) d2i_ASN1_type_bytes((ASN1_STRING **)a,pp,l, B_ASN1_PRINTABLE) #define M_DIRECTORYSTRING_new() ASN1_STRING_type_new(V_ASN1_PRINTABLESTRING) #define M_DIRECTORYSTRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_DIRECTORYSTRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a, pp,a->type,V_ASN1_UNIVERSAL) #define M_d2i_DIRECTORYSTRING(a,pp,l) d2i_ASN1_type_bytes((ASN1_STRING **)a,pp,l, B_ASN1_DIRECTORYSTRING) #define M_DISPLAYTEXT_new() ASN1_STRING_type_new(V_ASN1_VISIBLESTRING) #define M_DISPLAYTEXT_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_DISPLAYTEXT(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a, pp,a->type,V_ASN1_UNIVERSAL) #define M_d2i_DISPLAYTEXT(a,pp,l) d2i_ASN1_type_bytes((ASN1_STRING **)a,pp,l, B_ASN1_DISPLAYTEXT) #define M_ASN1_PRINTABLESTRING_new() (ASN1_PRINTABLESTRING *) ASN1_STRING_type_new(V_ASN1_PRINTABLESTRING) #define M_ASN1_PRINTABLESTRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_ASN1_PRINTABLESTRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_PRINTABLESTRING, V_ASN1_UNIVERSAL) #define M_d2i_ASN1_PRINTABLESTRING(a,pp,l) (ASN1_PRINTABLESTRING *)d2i_ASN1_type_bytes ((ASN1_STRING **)a,pp,l,B_ASN1_PRINTABLESTRING) #define M_ASN1_T61STRING_new() (ASN1_T61STRING *) ASN1_STRING_type_new(V_ASN1_T61STRING) #define M_ASN1_T61STRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_ASN1_T61STRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_T61STRING, V_ASN1_UNIVERSAL) #define M_d2i_ASN1_T61STRING(a,pp,l) (ASN1_T61STRING *)d2i_ASN1_type_bytes ((ASN1_STRING **)a,pp,l,B_ASN1_T61STRING) #define M_ASN1_IA5STRING_new() (ASN1_IA5STRING *) ASN1_STRING_type_new(V_ASN1_IA5STRING) #define M_ASN1_IA5STRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_ASN1_IA5STRING_dup(a) (ASN1_IA5STRING *)ASN1_STRING_dup((const ASN1_STRING *)a) #define M_i2d_ASN1_IA5STRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_IA5STRING, V_ASN1_UNIVERSAL) #define M_d2i_ASN1_IA5STRING(a,pp,l) (ASN1_IA5STRING *)d2i_ASN1_type_bytes((ASN1_STRING **)a,pp,l, B_ASN1_IA5STRING) #define M_ASN1_UTCTIME_new() (ASN1_UTCTIME *) ASN1_STRING_type_new(V_ASN1_UTCTIME) #define M_ASN1_UTCTIME_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_ASN1_UTCTIME_dup(a) (ASN1_UTCTIME *) ASN1_STRING_dup((const ASN1_STRING *)a) #define M_ASN1_GENERALIZEDTIME_new() (ASN1_GENERALIZEDTIME *) ASN1_STRING_type_new(V_ASN1_GENERALIZEDTIME) #define M_ASN1_GENERALIZEDTIME_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_ASN1_GENERALIZEDTIME_dup(a) (ASN1_GENERALIZEDTIME *)ASN1_STRING_dup( (const ASN1_STRING *)a) #define M_ASN1_TIME_new() (ASN1_TIME *) ASN1_STRING_type_new(V_ASN1_UTCTIME) #define M_ASN1_TIME_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_ASN1_TIME_dup(a) (ASN1_TIME *) ASN1_STRING_dup((const ASN1_STRING *)a) #define M_ASN1_GENERALSTRING_new() (ASN1_GENERALSTRING *) ASN1_STRING_type_new(V_ASN1_GENERALSTRING) #define M_ASN1_GENERALSTRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_ASN1_GENERALSTRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_GENERALSTRING, V_ASN1_UNIVERSAL) #define M_d2i_ASN1_GENERALSTRING(a,pp,l) (ASN1_GENERALSTRING *)d2i_ASN1_type_bytes ((ASN1_STRING **)a,pp,l,B_ASN1_GENERALSTRING) #define M_ASN1_UNIVERSALSTRING_new() (ASN1_UNIVERSALSTRING *) ASN1_STRING_type_new(V_ASN1_UNIVERSALSTRING) #define M_ASN1_UNIVERSALSTRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_ASN1_UNIVERSALSTRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_UNIVERSALSTRING, V_ASN1_UNIVERSAL) #define M_d2i_ASN1_UNIVERSALSTRING(a,pp,l) (ASN1_UNIVERSALSTRING *)d2i_ASN1_type_bytes ((ASN1_STRING **)a,pp,l,B_ASN1_UNIVERSALSTRING) #define M_ASN1_BMPSTRING_new() (ASN1_BMPSTRING *) ASN1_STRING_type_new(V_ASN1_BMPSTRING) #define M_ASN1_BMPSTRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_ASN1_BMPSTRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_BMPSTRING, V_ASN1_UNIVERSAL) #define M_d2i_ASN1_BMPSTRING(a,pp,l) (ASN1_BMPSTRING *)d2i_ASN1_type_bytes ((ASN1_STRING **)a,pp,l,B_ASN1_BMPSTRING) #define M_ASN1_VISIBLESTRING_new() (ASN1_VISIBLESTRING *) ASN1_STRING_type_new(V_ASN1_VISIBLESTRING) #define M_ASN1_VISIBLESTRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_ASN1_VISIBLESTRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_VISIBLESTRING, V_ASN1_UNIVERSAL) #define M_d2i_ASN1_VISIBLESTRING(a,pp,l) (ASN1_VISIBLESTRING *)d2i_ASN1_type_bytes ((ASN1_STRING **)a,pp,l,B_ASN1_VISIBLESTRING) #define M_ASN1_UTF8STRING_new() (ASN1_UTF8STRING *) ASN1_STRING_type_new(V_ASN1_UTF8STRING) #define M_ASN1_UTF8STRING_free(a) ASN1_STRING_free((ASN1_STRING *)a) #define M_i2d_ASN1_UTF8STRING(a,pp) i2d_ASN1_bytes((ASN1_STRING *)a,pp,V_ASN1_UTF8STRING, V_ASN1_UNIVERSAL) #define M_d2i_ASN1_UTF8STRING(a,pp,l) (ASN1_UTF8STRING *)d2i_ASN1_type_bytes ((ASN1_STRING **)a,pp,l,B_ASN1_UTF8STRING) #define IS_SEQUENCE 0 #define IS_SET 1 ASN1_TYPE *ASN1_TYPE_new(void); void ASN1_TYPE_free(ASN1_TYPE *a); ASN1_TYPE *d2i_ASN1_TYPE(ASN1_TYPE **a, const unsigned char **in, long len); int i2d_ASN1_TYPE(ASN1_TYPE *a, unsigned char **out); extern const ASN1_ITEM ASN1_ANY_it; int ASN1_TYPE_get(ASN1_TYPE *a); void ASN1_TYPE_set(ASN1_TYPE *a, int type, void *value); int ASN1_TYPE_set1(ASN1_TYPE *a, int type, const void *value); int ASN1_TYPE_cmp(const ASN1_TYPE *a, const ASN1_TYPE *b); ASN1_OBJECT * ASN1_OBJECT_new(void ); void ASN1_OBJECT_free(ASN1_OBJECT *a); int i2d_ASN1_OBJECT(ASN1_OBJECT *a,unsigned char **pp); ASN1_OBJECT * c2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length); ASN1_OBJECT * d2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length); extern const ASN1_ITEM ASN1_OBJECT_it; struct stack_st_ASN1_OBJECT { _STACK stack; }; ASN1_STRING * ASN1_STRING_new(void); void ASN1_STRING_free(ASN1_STRING *a); int ASN1_STRING_copy(ASN1_STRING *dst, const ASN1_STRING *str); ASN1_STRING * ASN1_STRING_dup(const ASN1_STRING *a); ASN1_STRING * ASN1_STRING_type_new(int type ); int ASN1_STRING_cmp(const ASN1_STRING *a, const ASN1_STRING *b); int ASN1_STRING_set(ASN1_STRING *str, const void *data, int len); void ASN1_STRING_set0(ASN1_STRING *str, void *data, int len); int ASN1_STRING_length(const ASN1_STRING *x); void ASN1_STRING_length_set(ASN1_STRING *x, int n); int ASN1_STRING_type(ASN1_STRING *x); unsigned char * ASN1_STRING_data(ASN1_STRING *x); ASN1_BIT_STRING *ASN1_BIT_STRING_new(void); void ASN1_BIT_STRING_free(ASN1_BIT_STRING *a); ASN1_BIT_STRING *d2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a, const unsigned char **in, long len); int i2d_ASN1_BIT_STRING(ASN1_BIT_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_BIT_STRING_it; int i2c_ASN1_BIT_STRING(ASN1_BIT_STRING *a,unsigned char **pp); ASN1_BIT_STRING *c2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a,const unsigned char **pp, long length); int ASN1_BIT_STRING_set(ASN1_BIT_STRING *a, unsigned char *d, int length ); int ASN1_BIT_STRING_set_bit(ASN1_BIT_STRING *a, int n, int value); int ASN1_BIT_STRING_get_bit(ASN1_BIT_STRING *a, int n); int ASN1_BIT_STRING_check(ASN1_BIT_STRING *a, unsigned char *flags, int flags_len); int ASN1_BIT_STRING_name_print(BIO *out, ASN1_BIT_STRING *bs, BIT_STRING_BITNAME *tbl, int indent); int ASN1_BIT_STRING_num_asc(char *name, BIT_STRING_BITNAME *tbl); int ASN1_BIT_STRING_set_asc(ASN1_BIT_STRING *bs, char *name, int value, BIT_STRING_BITNAME *tbl); int i2d_ASN1_BOOLEAN(int a,unsigned char **pp); int d2i_ASN1_BOOLEAN(int *a,const unsigned char **pp,long length); ASN1_INTEGER *ASN1_INTEGER_new(void); void ASN1_INTEGER_free(ASN1_INTEGER *a); ASN1_INTEGER *d2i_ASN1_INTEGER(ASN1_INTEGER **a, const unsigned char **in, long len); int i2d_ASN1_INTEGER(ASN1_INTEGER *a, unsigned char **out); extern const ASN1_ITEM ASN1_INTEGER_it; int i2c_ASN1_INTEGER(ASN1_INTEGER *a,unsigned char **pp); ASN1_INTEGER *c2i_ASN1_INTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length); ASN1_INTEGER *d2i_ASN1_UINTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length); ASN1_INTEGER * ASN1_INTEGER_dup(const ASN1_INTEGER *x); int ASN1_INTEGER_cmp(const ASN1_INTEGER *x, const ASN1_INTEGER *y); ASN1_ENUMERATED *ASN1_ENUMERATED_new(void); void ASN1_ENUMERATED_free(ASN1_ENUMERATED *a); ASN1_ENUMERATED *d2i_ASN1_ENUMERATED(ASN1_ENUMERATED **a, const unsigned char **in, long len); int i2d_ASN1_ENUMERATED(ASN1_ENUMERATED *a, unsigned char **out); extern const ASN1_ITEM ASN1_ENUMERATED_it; int ASN1_UTCTIME_check(ASN1_UTCTIME *a); ASN1_UTCTIME *ASN1_UTCTIME_set(ASN1_UTCTIME *s,time_t t); ASN1_UTCTIME *ASN1_UTCTIME_adj(ASN1_UTCTIME *s, time_t t, int offset_day, long offset_sec); int ASN1_UTCTIME_set_string(ASN1_UTCTIME *s, const char *str); int ASN1_UTCTIME_cmp_time_t(const ASN1_UTCTIME *s, time_t t); int ASN1_GENERALIZEDTIME_check(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_set(ASN1_GENERALIZEDTIME *s,time_t t); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_adj(ASN1_GENERALIZEDTIME *s, time_t t, int offset_day, long offset_sec); int ASN1_GENERALIZEDTIME_set_string(ASN1_GENERALIZEDTIME *s, const char *str); ASN1_OCTET_STRING *ASN1_OCTET_STRING_new(void); void ASN1_OCTET_STRING_free(ASN1_OCTET_STRING *a); ASN1_OCTET_STRING *d2i_ASN1_OCTET_STRING(ASN1_OCTET_STRING **a, const unsigned char **in, long len); int i2d_ASN1_OCTET_STRING(ASN1_OCTET_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_OCTET_STRING_it; ASN1_OCTET_STRING * ASN1_OCTET_STRING_dup(const ASN1_OCTET_STRING *a); int ASN1_OCTET_STRING_cmp(const ASN1_OCTET_STRING *a, const ASN1_OCTET_STRING *b); int ASN1_OCTET_STRING_set(ASN1_OCTET_STRING *str, const unsigned char *data, int len); ASN1_VISIBLESTRING *ASN1_VISIBLESTRING_new(void); void ASN1_VISIBLESTRING_free(ASN1_VISIBLESTRING *a); ASN1_VISIBLESTRING *d2i_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING **a, const unsigned char **in, long len); int i2d_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_VISIBLESTRING_it; ASN1_UNIVERSALSTRING *ASN1_UNIVERSALSTRING_new(void); void ASN1_UNIVERSALSTRING_free(ASN1_UNIVERSALSTRING *a); ASN1_UNIVERSALSTRING *d2i_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING **a, const unsigned char **in, long len); int i2d_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_UNIVERSALSTRING_it; ASN1_UTF8STRING *ASN1_UTF8STRING_new(void); void ASN1_UTF8STRING_free(ASN1_UTF8STRING *a); ASN1_UTF8STRING *d2i_ASN1_UTF8STRING(ASN1_UTF8STRING **a, const unsigned char **in, long len); int i2d_ASN1_UTF8STRING(ASN1_UTF8STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_UTF8STRING_it; ASN1_NULL *ASN1_NULL_new(void); void ASN1_NULL_free(ASN1_NULL *a); ASN1_NULL *d2i_ASN1_NULL(ASN1_NULL **a, const unsigned char **in, long len); int i2d_ASN1_NULL(ASN1_NULL *a, unsigned char **out); extern const ASN1_ITEM ASN1_NULL_it; ASN1_BMPSTRING *ASN1_BMPSTRING_new(void); void ASN1_BMPSTRING_free(ASN1_BMPSTRING *a); ASN1_BMPSTRING *d2i_ASN1_BMPSTRING(ASN1_BMPSTRING **a, const unsigned char **in, long len); int i2d_ASN1_BMPSTRING(ASN1_BMPSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_BMPSTRING_it; int UTF8_getc(const unsigned char *str, int len, unsigned long *val); int UTF8_putc(unsigned char *str, int len, unsigned long value); ASN1_STRING *ASN1_PRINTABLE_new(void); void ASN1_PRINTABLE_free(ASN1_STRING *a); ASN1_STRING *d2i_ASN1_PRINTABLE(ASN1_STRING **a, const unsigned char **in, long len); int i2d_ASN1_PRINTABLE(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_PRINTABLE_it; ASN1_STRING *DIRECTORYSTRING_new(void); void DIRECTORYSTRING_free(ASN1_STRING *a); ASN1_STRING *d2i_DIRECTORYSTRING(ASN1_STRING **a, const unsigned char **in, long len); int i2d_DIRECTORYSTRING(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM DIRECTORYSTRING_it; ASN1_STRING *DISPLAYTEXT_new(void); void DISPLAYTEXT_free(ASN1_STRING *a); ASN1_STRING *d2i_DISPLAYTEXT(ASN1_STRING **a, const unsigned char **in, long len); int i2d_DISPLAYTEXT(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM DISPLAYTEXT_it; ASN1_PRINTABLESTRING *ASN1_PRINTABLESTRING_new(void); void ASN1_PRINTABLESTRING_free(ASN1_PRINTABLESTRING *a); ASN1_PRINTABLESTRING *d2i_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING **a, const unsigned char **in, long len); int i2d_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_PRINTABLESTRING_it; ASN1_T61STRING *ASN1_T61STRING_new(void); void ASN1_T61STRING_free(ASN1_T61STRING *a); ASN1_T61STRING *d2i_ASN1_T61STRING(ASN1_T61STRING **a, const unsigned char **in, long len); int i2d_ASN1_T61STRING(ASN1_T61STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_T61STRING_it; ASN1_IA5STRING *ASN1_IA5STRING_new(void); void ASN1_IA5STRING_free(ASN1_IA5STRING *a); ASN1_IA5STRING *d2i_ASN1_IA5STRING(ASN1_IA5STRING **a, const unsigned char **in, long len); int i2d_ASN1_IA5STRING(ASN1_IA5STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_IA5STRING_it; ASN1_GENERALSTRING *ASN1_GENERALSTRING_new(void); void ASN1_GENERALSTRING_free(ASN1_GENERALSTRING *a); ASN1_GENERALSTRING *d2i_ASN1_GENERALSTRING(ASN1_GENERALSTRING **a, const unsigned char **in, long len); int i2d_ASN1_GENERALSTRING(ASN1_GENERALSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_GENERALSTRING_it; ASN1_UTCTIME *ASN1_UTCTIME_new(void); void ASN1_UTCTIME_free(ASN1_UTCTIME *a); ASN1_UTCTIME *d2i_ASN1_UTCTIME(ASN1_UTCTIME **a, const unsigned char **in, long len); int i2d_ASN1_UTCTIME(ASN1_UTCTIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_UTCTIME_it; ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_new(void); void ASN1_GENERALIZEDTIME_free(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *d2i_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME **a, const unsigned char **in, long len); int i2d_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_GENERALIZEDTIME_it; ASN1_TIME *ASN1_TIME_new(void); void ASN1_TIME_free(ASN1_TIME *a); ASN1_TIME *d2i_ASN1_TIME(ASN1_TIME **a, const unsigned char **in, long len); int i2d_ASN1_TIME(ASN1_TIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_TIME_it; extern const ASN1_ITEM ASN1_OCTET_STRING_NDEF_it; ASN1_TIME *ASN1_TIME_set(ASN1_TIME *s,time_t t); ASN1_TIME *ASN1_TIME_adj(ASN1_TIME *s,time_t t, int offset_day, long offset_sec); int ASN1_TIME_check(ASN1_TIME *t); ASN1_GENERALIZEDTIME *ASN1_TIME_to_generalizedtime(ASN1_TIME *t, ASN1_GENERALIZEDTIME **out); int ASN1_TIME_set_string(ASN1_TIME *s, const char *str); int i2d_ASN1_SET(struct stack_st_OPENSSL_BLOCK *a, unsigned char **pp, i2d_of_void *i2d, int ex_tag, int ex_class, int is_set); struct stack_st_OPENSSL_BLOCK *d2i_ASN1_SET(struct stack_st_OPENSSL_BLOCK **a, const unsigned char **pp, long length, d2i_of_void *d2i, void (*free_func)(OPENSSL_BLOCK), int ex_tag, int ex_class); int i2a_ASN1_INTEGER(BIO *bp, ASN1_INTEGER *a); int a2i_ASN1_INTEGER(BIO *bp,ASN1_INTEGER *bs,char *buf,int size); int i2a_ASN1_ENUMERATED(BIO *bp, ASN1_ENUMERATED *a); int a2i_ASN1_ENUMERATED(BIO *bp,ASN1_ENUMERATED *bs,char *buf,int size); int i2a_ASN1_OBJECT(BIO *bp,ASN1_OBJECT *a); int a2i_ASN1_STRING(BIO *bp,ASN1_STRING *bs,char *buf,int size); int i2a_ASN1_STRING(BIO *bp, ASN1_STRING *a, int type); int i2t_ASN1_OBJECT(char *buf,int buf_len,ASN1_OBJECT *a); int a2d_ASN1_OBJECT(unsigned char *out,int olen, const char *buf, int num); ASN1_OBJECT *ASN1_OBJECT_create(int nid, unsigned char *data,int len, const char *sn, const char *ln); int ASN1_INTEGER_set(ASN1_INTEGER *a, long v); long ASN1_INTEGER_get(const ASN1_INTEGER *a); ASN1_INTEGER *BN_to_ASN1_INTEGER(const BIGNUM *bn, ASN1_INTEGER *ai); BIGNUM *ASN1_INTEGER_to_BN(const ASN1_INTEGER *ai,BIGNUM *bn); int ASN1_ENUMERATED_set(ASN1_ENUMERATED *a, long v); long ASN1_ENUMERATED_get(ASN1_ENUMERATED *a); ASN1_ENUMERATED *BN_to_ASN1_ENUMERATED(BIGNUM *bn, ASN1_ENUMERATED *ai); BIGNUM *ASN1_ENUMERATED_to_BN(ASN1_ENUMERATED *ai,BIGNUM *bn); int ASN1_PRINTABLE_type(const unsigned char *s, int max); int i2d_ASN1_bytes(ASN1_STRING *a, unsigned char **pp, int tag, int xclass); ASN1_STRING *d2i_ASN1_bytes(ASN1_STRING **a, const unsigned char **pp, long length, int Ptag, int Pclass); unsigned long ASN1_tag2bit(int tag); ASN1_STRING *d2i_ASN1_type_bytes(ASN1_STRING **a,const unsigned char **pp, long length,int type); int asn1_Finish(ASN1_CTX *c); int asn1_const_Finish(ASN1_const_CTX *c); int ASN1_get_object(const unsigned char **pp, long *plength, int *ptag, int *pclass, long omax); int ASN1_check_infinite_end(unsigned char **p,long len); int ASN1_const_check_infinite_end(const unsigned char **p,long len); void ASN1_put_object(unsigned char **pp, int constructed, int length, int tag, int xclass); int ASN1_put_eoc(unsigned char **pp); int ASN1_object_size(int constructed, int length, int tag); void *ASN1_dup(i2d_of_void *i2d, d2i_of_void *d2i, void *x); #define ASN1_dup_of(type,i2d,d2i,x) ((type*)ASN1_dup(CHECKED_I2D_OF(type, i2d), CHECKED_D2I_OF(type, d2i), CHECKED_PTR_OF(type, x))) #define ASN1_dup_of_const(type,i2d,d2i,x) ((type*)ASN1_dup(CHECKED_I2D_OF(const type, i2d), CHECKED_D2I_OF(type, d2i), CHECKED_PTR_OF(const type, x))) void *ASN1_item_dup(const ASN1_ITEM *it, void *x); #define M_ASN1_new_of(type) (type *)ASN1_item_new(ASN1_ITEM_rptr(type)) #define M_ASN1_free_of(x,type) ASN1_item_free(CHECKED_PTR_OF(type, x), ASN1_ITEM_rptr(type)) void *ASN1_d2i_fp(void *(*xnew)(void), d2i_of_void *d2i, FILE *in, void **x); #define ASN1_d2i_fp_of(type,xnew,d2i,in,x) ((type*)ASN1_d2i_fp(CHECKED_NEW_OF(type, xnew), CHECKED_D2I_OF(type, d2i), in, CHECKED_PPTR_OF(type, x))) void *ASN1_item_d2i_fp(const ASN1_ITEM *it, FILE *in, void *x); int ASN1_i2d_fp(i2d_of_void *i2d,FILE *out,void *x); #define ASN1_i2d_fp_of(type,i2d,out,x) (ASN1_i2d_fp(CHECKED_I2D_OF(type, i2d), out, CHECKED_PTR_OF(type, x))) #define ASN1_i2d_fp_of_const(type,i2d,out,x) (ASN1_i2d_fp(CHECKED_I2D_OF(const type, i2d), out, CHECKED_PTR_OF(const type, x))) int ASN1_item_i2d_fp(const ASN1_ITEM *it, FILE *out, void *x); int ASN1_STRING_print_ex_fp(FILE *fp, ASN1_STRING *str, unsigned long flags); int ASN1_STRING_to_UTF8(unsigned char **out, ASN1_STRING *in); void *ASN1_d2i_bio(void *(*xnew)(void), d2i_of_void *d2i, BIO *in, void **x); #define ASN1_d2i_bio_of(type,xnew,d2i,in,x) ((type*)ASN1_d2i_bio( CHECKED_NEW_OF(type, xnew), CHECKED_D2I_OF(type, d2i), in, CHECKED_PPTR_OF(type, x))) void *ASN1_item_d2i_bio(const ASN1_ITEM *it, BIO *in, void *x); int ASN1_i2d_bio(i2d_of_void *i2d,BIO *out, unsigned char *x); #define ASN1_i2d_bio_of(type,i2d,out,x) (ASN1_i2d_bio(CHECKED_I2D_OF(type, i2d), out, CHECKED_PTR_OF(type, x))) #define ASN1_i2d_bio_of_const(type,i2d,out,x) (ASN1_i2d_bio(CHECKED_I2D_OF(const type, i2d), out, CHECKED_PTR_OF(const type, x))) int ASN1_item_i2d_bio(const ASN1_ITEM *it, BIO *out, void *x); int ASN1_UTCTIME_print(BIO *fp, const ASN1_UTCTIME *a); int ASN1_GENERALIZEDTIME_print(BIO *fp, const ASN1_GENERALIZEDTIME *a); int ASN1_TIME_print(BIO *fp, const ASN1_TIME *a); int ASN1_STRING_print(BIO *bp, const ASN1_STRING *v); int ASN1_STRING_print_ex(BIO *out, ASN1_STRING *str, unsigned long flags); int ASN1_bn_print(BIO *bp, const char *number, const BIGNUM *num, unsigned char *buf, int off); int ASN1_parse(BIO *bp,const unsigned char *pp,long len,int indent); int ASN1_parse_dump(BIO *bp,const unsigned char *pp,long len,int indent,int dump); const char *ASN1_tag2str(int tag); NETSCAPE_X509 *NETSCAPE_X509_new(void); void NETSCAPE_X509_free(NETSCAPE_X509 *a); NETSCAPE_X509 *d2i_NETSCAPE_X509(NETSCAPE_X509 **a, const unsigned char **in, long len); int i2d_NETSCAPE_X509(NETSCAPE_X509 *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_X509_it; int ASN1_UNIVERSALSTRING_to_string(ASN1_UNIVERSALSTRING *s); int ASN1_TYPE_set_octetstring(ASN1_TYPE *a, unsigned char *data, int len); int ASN1_TYPE_get_octetstring(ASN1_TYPE *a, unsigned char *data, int max_len); int ASN1_TYPE_set_int_octetstring(ASN1_TYPE *a, long num, unsigned char *data, int len); int ASN1_TYPE_get_int_octetstring(ASN1_TYPE *a,long *num, unsigned char *data, int max_len); struct stack_st_OPENSSL_BLOCK *ASN1_seq_unpack(const unsigned char *buf, int len, d2i_of_void *d2i, void (*free_func)(OPENSSL_BLOCK)); unsigned char *ASN1_seq_pack(struct stack_st_OPENSSL_BLOCK *safes, i2d_of_void *i2d, unsigned char **buf, int *len ); void *ASN1_unpack_string(ASN1_STRING *oct, d2i_of_void *d2i); void *ASN1_item_unpack(ASN1_STRING *oct, const ASN1_ITEM *it); ASN1_STRING *ASN1_pack_string(void *obj, i2d_of_void *i2d, ASN1_OCTET_STRING **oct); #define ASN1_pack_string_of(type,obj,i2d,oct) (ASN1_pack_string(CHECKED_PTR_OF(type, obj), CHECKED_I2D_OF(type, i2d), oct)) ASN1_STRING *ASN1_item_pack(void *obj, const ASN1_ITEM *it, ASN1_OCTET_STRING **oct); void ASN1_STRING_set_default_mask(unsigned long mask); int ASN1_STRING_set_default_mask_asc(const char *p); unsigned long ASN1_STRING_get_default_mask(void); int ASN1_mbstring_copy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask); int ASN1_mbstring_ncopy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask, long minsize, long maxsize); ASN1_STRING *ASN1_STRING_set_by_NID(ASN1_STRING **out, const unsigned char *in, int inlen, int inform, int nid); ASN1_STRING_TABLE *ASN1_STRING_TABLE_get(int nid); int ASN1_STRING_TABLE_add(int, long, long, unsigned long, unsigned long); void ASN1_STRING_TABLE_cleanup(void); ASN1_VALUE *ASN1_item_new(const ASN1_ITEM *it); void ASN1_item_free(ASN1_VALUE *val, const ASN1_ITEM *it); ASN1_VALUE * ASN1_item_d2i(ASN1_VALUE **val, const unsigned char **in, long len, const ASN1_ITEM *it); int ASN1_item_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it); int ASN1_item_ndef_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it); void ASN1_add_oid_module(void); ASN1_TYPE *ASN1_generate_nconf(char *str, CONF *nconf); ASN1_TYPE *ASN1_generate_v3(char *str, X509V3_CTX *cnf); #define ASN1_PCTX_FLAGS_SHOW_ABSENT 0x001 #define ASN1_PCTX_FLAGS_SHOW_SEQUENCE 0x002 #define ASN1_PCTX_FLAGS_SHOW_SSOF 0x004 #define ASN1_PCTX_FLAGS_SHOW_TYPE 0x008 #define ASN1_PCTX_FLAGS_NO_ANY_TYPE 0x010 #define ASN1_PCTX_FLAGS_NO_MSTRING_TYPE 0x020 #define ASN1_PCTX_FLAGS_NO_FIELD_NAME 0x040 #define ASN1_PCTX_FLAGS_SHOW_FIELD_STRUCT_NAME 0x080 #define ASN1_PCTX_FLAGS_NO_STRUCT_NAME 0x100 int ASN1_item_print(BIO *out, ASN1_VALUE *ifld, int indent, const ASN1_ITEM *it, const ASN1_PCTX *pctx); ASN1_PCTX *ASN1_PCTX_new(void); void ASN1_PCTX_free(ASN1_PCTX *p); unsigned long ASN1_PCTX_get_flags(ASN1_PCTX *p); void ASN1_PCTX_set_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_nm_flags(ASN1_PCTX *p); void ASN1_PCTX_set_nm_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_cert_flags(ASN1_PCTX *p); void ASN1_PCTX_set_cert_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_oid_flags(ASN1_PCTX *p); void ASN1_PCTX_set_oid_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_str_flags(ASN1_PCTX *p); void ASN1_PCTX_set_str_flags(ASN1_PCTX *p, unsigned long flags); BIO_METHOD *BIO_f_asn1(void); BIO *BIO_new_NDEF(BIO *out, ASN1_VALUE *val, const ASN1_ITEM *it); int i2d_ASN1_bio_stream(BIO *out, ASN1_VALUE *val, BIO *in, int flags, const ASN1_ITEM *it); int PEM_write_bio_ASN1_stream(BIO *out, ASN1_VALUE *val, BIO *in, int flags, const char *hdr, const ASN1_ITEM *it); int SMIME_write_ASN1(BIO *bio, ASN1_VALUE *val, BIO *data, int flags, int ctype_nid, int econt_nid, struct stack_st_X509_ALGOR *mdalgs, const ASN1_ITEM *it); ASN1_VALUE *SMIME_read_ASN1(BIO *bio, BIO **bcont, const ASN1_ITEM *it); int SMIME_crlf_copy(BIO *in, BIO *out, int flags); int SMIME_text(BIO *in, BIO *out); void ERR_load_ASN1_strings(void); #define ASN1_F_A2D_ASN1_OBJECT 100 #define ASN1_F_A2I_ASN1_ENUMERATED 101 #define ASN1_F_A2I_ASN1_INTEGER 102 #define ASN1_F_A2I_ASN1_STRING 103 #define ASN1_F_APPEND_EXP 176 #define ASN1_F_ASN1_BIT_STRING_SET_BIT 183 #define ASN1_F_ASN1_CB 177 #define ASN1_F_ASN1_CHECK_TLEN 104 #define ASN1_F_ASN1_COLLATE_PRIMITIVE 105 #define ASN1_F_ASN1_COLLECT 106 #define ASN1_F_ASN1_D2I_EX_PRIMITIVE 108 #define ASN1_F_ASN1_D2I_FP 109 #define ASN1_F_ASN1_D2I_READ_BIO 107 #define ASN1_F_ASN1_DIGEST 184 #define ASN1_F_ASN1_DO_ADB 110 #define ASN1_F_ASN1_DUP 111 #define ASN1_F_ASN1_ENUMERATED_SET 112 #define ASN1_F_ASN1_ENUMERATED_TO_BN 113 #define ASN1_F_ASN1_EX_C2I 204 #define ASN1_F_ASN1_FIND_END 190 #define ASN1_F_ASN1_GENERALIZEDTIME_ADJ 216 #define ASN1_F_ASN1_GENERALIZEDTIME_SET 185 #define ASN1_F_ASN1_GENERATE_V3 178 #define ASN1_F_ASN1_GET_OBJECT 114 #define ASN1_F_ASN1_HEADER_NEW 115 #define ASN1_F_ASN1_I2D_BIO 116 #define ASN1_F_ASN1_I2D_FP 117 #define ASN1_F_ASN1_INTEGER_SET 118 #define ASN1_F_ASN1_INTEGER_TO_BN 119 #define ASN1_F_ASN1_ITEM_D2I_FP 206 #define ASN1_F_ASN1_ITEM_DUP 191 #define ASN1_F_ASN1_ITEM_EX_COMBINE_NEW 121 #define ASN1_F_ASN1_ITEM_EX_D2I 120 #define ASN1_F_ASN1_ITEM_I2D_BIO 192 #define ASN1_F_ASN1_ITEM_I2D_FP 193 #define ASN1_F_ASN1_ITEM_PACK 198 #define ASN1_F_ASN1_ITEM_SIGN 195 #define ASN1_F_ASN1_ITEM_SIGN_CTX 220 #define ASN1_F_ASN1_ITEM_UNPACK 199 #define ASN1_F_ASN1_ITEM_VERIFY 197 #define ASN1_F_ASN1_MBSTRING_NCOPY 122 #define ASN1_F_ASN1_OBJECT_NEW 123 #define ASN1_F_ASN1_OUTPUT_DATA 214 #define ASN1_F_ASN1_PACK_STRING 124 #define ASN1_F_ASN1_PCTX_NEW 205 #define ASN1_F_ASN1_PKCS5_PBE_SET 125 #define ASN1_F_ASN1_SEQ_PACK 126 #define ASN1_F_ASN1_SEQ_UNPACK 127 #define ASN1_F_ASN1_SIGN 128 #define ASN1_F_ASN1_STR2TYPE 179 #define ASN1_F_ASN1_STRING_SET 186 #define ASN1_F_ASN1_STRING_TABLE_ADD 129 #define ASN1_F_ASN1_STRING_TYPE_NEW 130 #define ASN1_F_ASN1_TEMPLATE_EX_D2I 132 #define ASN1_F_ASN1_TEMPLATE_NEW 133 #define ASN1_F_ASN1_TEMPLATE_NOEXP_D2I 131 #define ASN1_F_ASN1_TIME_ADJ 217 #define ASN1_F_ASN1_TIME_SET 175 #define ASN1_F_ASN1_TYPE_GET_INT_OCTETSTRING 134 #define ASN1_F_ASN1_TYPE_GET_OCTETSTRING 135 #define ASN1_F_ASN1_UNPACK_STRING 136 #define ASN1_F_ASN1_UTCTIME_ADJ 218 #define ASN1_F_ASN1_UTCTIME_SET 187 #define ASN1_F_ASN1_VERIFY 137 #define ASN1_F_B64_READ_ASN1 209 #define ASN1_F_B64_WRITE_ASN1 210 #define ASN1_F_BIO_NEW_NDEF 208 #define ASN1_F_BITSTR_CB 180 #define ASN1_F_BN_TO_ASN1_ENUMERATED 138 #define ASN1_F_BN_TO_ASN1_INTEGER 139 #define ASN1_F_C2I_ASN1_BIT_STRING 189 #define ASN1_F_C2I_ASN1_INTEGER 194 #define ASN1_F_C2I_ASN1_OBJECT 196 #define ASN1_F_COLLECT_DATA 140 #define ASN1_F_D2I_ASN1_BIT_STRING 141 #define ASN1_F_D2I_ASN1_BOOLEAN 142 #define ASN1_F_D2I_ASN1_BYTES 143 #define ASN1_F_D2I_ASN1_GENERALIZEDTIME 144 #define ASN1_F_D2I_ASN1_HEADER 145 #define ASN1_F_D2I_ASN1_INTEGER 146 #define ASN1_F_D2I_ASN1_OBJECT 147 #define ASN1_F_D2I_ASN1_SET 148 #define ASN1_F_D2I_ASN1_TYPE_BYTES 149 #define ASN1_F_D2I_ASN1_UINTEGER 150 #define ASN1_F_D2I_ASN1_UTCTIME 151 #define ASN1_F_D2I_AUTOPRIVATEKEY 207 #define ASN1_F_D2I_NETSCAPE_RSA 152 #define ASN1_F_D2I_NETSCAPE_RSA_2 153 #define ASN1_F_D2I_PRIVATEKEY 154 #define ASN1_F_D2I_PUBLICKEY 155 #define ASN1_F_D2I_RSA_NET 200 #define ASN1_F_D2I_RSA_NET_2 201 #define ASN1_F_D2I_X509 156 #define ASN1_F_D2I_X509_CINF 157 #define ASN1_F_D2I_X509_PKEY 159 #define ASN1_F_I2D_ASN1_BIO_STREAM 211 #define ASN1_F_I2D_ASN1_SET 188 #define ASN1_F_I2D_ASN1_TIME 160 #define ASN1_F_I2D_DSA_PUBKEY 161 #define ASN1_F_I2D_EC_PUBKEY 181 #define ASN1_F_I2D_PRIVATEKEY 163 #define ASN1_F_I2D_PUBLICKEY 164 #define ASN1_F_I2D_RSA_NET 162 #define ASN1_F_I2D_RSA_PUBKEY 165 #define ASN1_F_LONG_C2I 166 #define ASN1_F_OID_MODULE_INIT 174 #define ASN1_F_PARSE_TAGGING 182 #define ASN1_F_PKCS5_PBE2_SET_IV 167 #define ASN1_F_PKCS5_PBE_SET 202 #define ASN1_F_PKCS5_PBE_SET0_ALGOR 215 #define ASN1_F_PKCS5_PBKDF2_SET 219 #define ASN1_F_SMIME_READ_ASN1 212 #define ASN1_F_SMIME_TEXT 213 #define ASN1_F_X509_CINF_NEW 168 #define ASN1_F_X509_CRL_ADD0_REVOKED 169 #define ASN1_F_X509_INFO_NEW 170 #define ASN1_F_X509_NAME_ENCODE 203 #define ASN1_F_X509_NAME_EX_D2I 158 #define ASN1_F_X509_NAME_EX_NEW 171 #define ASN1_F_X509_NEW 172 #define ASN1_F_X509_PKEY_NEW 173 #define ASN1_R_ADDING_OBJECT 171 #define ASN1_R_ASN1_PARSE_ERROR 203 #define ASN1_R_ASN1_SIG_PARSE_ERROR 204 #define ASN1_R_AUX_ERROR 100 #define ASN1_R_BAD_CLASS 101 #define ASN1_R_BAD_OBJECT_HEADER 102 #define ASN1_R_BAD_PASSWORD_READ 103 #define ASN1_R_BAD_TAG 104 #define ASN1_R_BMPSTRING_IS_WRONG_LENGTH 214 #define ASN1_R_BN_LIB 105 #define ASN1_R_BOOLEAN_IS_WRONG_LENGTH 106 #define ASN1_R_BUFFER_TOO_SMALL 107 #define ASN1_R_CIPHER_HAS_NO_OBJECT_IDENTIFIER 108 #define ASN1_R_CONTEXT_NOT_INITIALISED 217 #define ASN1_R_DATA_IS_WRONG 109 #define ASN1_R_DECODE_ERROR 110 #define ASN1_R_DECODING_ERROR 111 #define ASN1_R_DEPTH_EXCEEDED 174 #define ASN1_R_DIGEST_AND_KEY_TYPE_NOT_SUPPORTED 198 #define ASN1_R_ENCODE_ERROR 112 #define ASN1_R_ERROR_GETTING_TIME 173 #define ASN1_R_ERROR_LOADING_SECTION 172 #define ASN1_R_ERROR_PARSING_SET_ELEMENT 113 #define ASN1_R_ERROR_SETTING_CIPHER_PARAMS 114 #define ASN1_R_EXPECTING_AN_INTEGER 115 #define ASN1_R_EXPECTING_AN_OBJECT 116 #define ASN1_R_EXPECTING_A_BOOLEAN 117 #define ASN1_R_EXPECTING_A_TIME 118 #define ASN1_R_EXPLICIT_LENGTH_MISMATCH 119 #define ASN1_R_EXPLICIT_TAG_NOT_CONSTRUCTED 120 #define ASN1_R_FIELD_MISSING 121 #define ASN1_R_FIRST_NUM_TOO_LARGE 122 #define ASN1_R_HEADER_TOO_LONG 123 #define ASN1_R_ILLEGAL_BITSTRING_FORMAT 175 #define ASN1_R_ILLEGAL_BOOLEAN 176 #define ASN1_R_ILLEGAL_CHARACTERS 124 #define ASN1_R_ILLEGAL_FORMAT 177 #define ASN1_R_ILLEGAL_HEX 178 #define ASN1_R_ILLEGAL_IMPLICIT_TAG 179 #define ASN1_R_ILLEGAL_INTEGER 180 #define ASN1_R_ILLEGAL_NESTED_TAGGING 181 #define ASN1_R_ILLEGAL_NULL 125 #define ASN1_R_ILLEGAL_NULL_VALUE 182 #define ASN1_R_ILLEGAL_OBJECT 183 #define ASN1_R_ILLEGAL_OPTIONAL_ANY 126 #define ASN1_R_ILLEGAL_OPTIONS_ON_ITEM_TEMPLATE 170 #define ASN1_R_ILLEGAL_TAGGED_ANY 127 #define ASN1_R_ILLEGAL_TIME_VALUE 184 #define ASN1_R_INTEGER_NOT_ASCII_FORMAT 185 #define ASN1_R_INTEGER_TOO_LARGE_FOR_LONG 128 #define ASN1_R_INVALID_BIT_STRING_BITS_LEFT 220 #define ASN1_R_INVALID_BMPSTRING_LENGTH 129 #define ASN1_R_INVALID_DIGIT 130 #define ASN1_R_INVALID_MIME_TYPE 205 #define ASN1_R_INVALID_MODIFIER 186 #define ASN1_R_INVALID_NUMBER 187 #define ASN1_R_INVALID_OBJECT_ENCODING 216 #define ASN1_R_INVALID_SEPARATOR 131 #define ASN1_R_INVALID_TIME_FORMAT 132 #define ASN1_R_INVALID_UNIVERSALSTRING_LENGTH 133 #define ASN1_R_INVALID_UTF8STRING 134 #define ASN1_R_IV_TOO_LARGE 135 #define ASN1_R_LENGTH_ERROR 136 #define ASN1_R_LIST_ERROR 188 #define ASN1_R_MIME_NO_CONTENT_TYPE 206 #define ASN1_R_MIME_PARSE_ERROR 207 #define ASN1_R_MIME_SIG_PARSE_ERROR 208 #define ASN1_R_MISSING_EOC 137 #define ASN1_R_MISSING_SECOND_NUMBER 138 #define ASN1_R_MISSING_VALUE 189 #define ASN1_R_MSTRING_NOT_UNIVERSAL 139 #define ASN1_R_MSTRING_WRONG_TAG 140 #define ASN1_R_NESTED_ASN1_STRING 197 #define ASN1_R_NON_HEX_CHARACTERS 141 #define ASN1_R_NOT_ASCII_FORMAT 190 #define ASN1_R_NOT_ENOUGH_DATA 142 #define ASN1_R_NO_CONTENT_TYPE 209 #define ASN1_R_NO_DEFAULT_DIGEST 201 #define ASN1_R_NO_MATCHING_CHOICE_TYPE 143 #define ASN1_R_NO_MULTIPART_BODY_FAILURE 210 #define ASN1_R_NO_MULTIPART_BOUNDARY 211 #define ASN1_R_NO_SIG_CONTENT_TYPE 212 #define ASN1_R_NULL_IS_WRONG_LENGTH 144 #define ASN1_R_OBJECT_NOT_ASCII_FORMAT 191 #define ASN1_R_ODD_NUMBER_OF_CHARS 145 #define ASN1_R_PRIVATE_KEY_HEADER_MISSING 146 #define ASN1_R_SECOND_NUMBER_TOO_LARGE 147 #define ASN1_R_SEQUENCE_LENGTH_MISMATCH 148 #define ASN1_R_SEQUENCE_NOT_CONSTRUCTED 149 #define ASN1_R_SEQUENCE_OR_SET_NEEDS_CONFIG 192 #define ASN1_R_SHORT_LINE 150 #define ASN1_R_SIG_INVALID_MIME_TYPE 213 #define ASN1_R_STREAMING_NOT_SUPPORTED 202 #define ASN1_R_STRING_TOO_LONG 151 #define ASN1_R_STRING_TOO_SHORT 152 #define ASN1_R_TAG_VALUE_TOO_HIGH 153 #define ASN1_R_THE_ASN1_OBJECT_IDENTIFIER_IS_NOT_KNOWN_FOR_THIS_MD 154 #define ASN1_R_TIME_NOT_ASCII_FORMAT 193 #define ASN1_R_TOO_LONG 155 #define ASN1_R_TYPE_NOT_CONSTRUCTED 156 #define ASN1_R_UNABLE_TO_DECODE_RSA_KEY 157 #define ASN1_R_UNABLE_TO_DECODE_RSA_PRIVATE_KEY 158 #define ASN1_R_UNEXPECTED_EOC 159 #define ASN1_R_UNIVERSALSTRING_IS_WRONG_LENGTH 215 #define ASN1_R_UNKNOWN_FORMAT 160 #define ASN1_R_UNKNOWN_MESSAGE_DIGEST_ALGORITHM 161 #define ASN1_R_UNKNOWN_OBJECT_TYPE 162 #define ASN1_R_UNKNOWN_PUBLIC_KEY_TYPE 163 #define ASN1_R_UNKNOWN_SIGNATURE_ALGORITHM 199 #define ASN1_R_UNKNOWN_TAG 194 #define ASN1_R_UNKOWN_FORMAT 195 #define ASN1_R_UNSUPPORTED_ANY_DEFINED_BY_TYPE 164 #define ASN1_R_UNSUPPORTED_CIPHER 165 #define ASN1_R_UNSUPPORTED_ENCRYPTION_ALGORITHM 166 #define ASN1_R_UNSUPPORTED_PUBLIC_KEY_TYPE 167 #define ASN1_R_UNSUPPORTED_TYPE 196 #define ASN1_R_WRONG_PUBLIC_KEY_TYPE 200 #define ASN1_R_WRONG_TAG 168 #define ASN1_R_WRONG_TYPE 169 # 961 "/usr/include/openssl/objects.h" 2 3 4 #define OBJ_NAME_TYPE_UNDEF 0x00 #define OBJ_NAME_TYPE_MD_METH 0x01 #define OBJ_NAME_TYPE_CIPHER_METH 0x02 #define OBJ_NAME_TYPE_PKEY_METH 0x03 #define OBJ_NAME_TYPE_COMP_METH 0x04 #define OBJ_NAME_TYPE_NUM 0x05 #define OBJ_NAME_ALIAS 0x8000 #define OBJ_BSEARCH_VALUE_ON_NOMATCH 0x01 #define OBJ_BSEARCH_FIRST_VALUE_ON_MATCH 0x02 typedef struct obj_name_st { int type; int alias; const char *name; const char *data; } OBJ_NAME; #define OBJ_create_and_add_object(a,b,c) OBJ_create(a,b,c) int OBJ_NAME_init(void); int OBJ_NAME_new_index(unsigned long (*hash_func)(const char *), int (*cmp_func)(const char *, const char *), void (*free_func)(const char *, int, const char *)); const char *OBJ_NAME_get(const char *name,int type); int OBJ_NAME_add(const char *name,int type,const char *data); int OBJ_NAME_remove(const char *name,int type); void OBJ_NAME_cleanup(int type); void OBJ_NAME_do_all(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg); void OBJ_NAME_do_all_sorted(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg); ASN1_OBJECT * OBJ_dup(const ASN1_OBJECT *o); ASN1_OBJECT * OBJ_nid2obj(int n); const char * OBJ_nid2ln(int n); const char * OBJ_nid2sn(int n); int OBJ_obj2nid(const ASN1_OBJECT *o); ASN1_OBJECT * OBJ_txt2obj(const char *s, int no_name); int OBJ_obj2txt(char *buf, int buf_len, const ASN1_OBJECT *a, int no_name); int OBJ_txt2nid(const char *s); int OBJ_ln2nid(const char *s); int OBJ_sn2nid(const char *s); int OBJ_cmp(const ASN1_OBJECT *a,const ASN1_OBJECT *b); const void * OBJ_bsearch_(const void *key,const void *base,int num,int size, int (*cmp)(const void *, const void *)); const void * OBJ_bsearch_ex_(const void *key,const void *base,int num, int size, int (*cmp)(const void *, const void *), int flags); #define _DECLARE_OBJ_BSEARCH_CMP_FN(scope,type1,type2,nm) static int nm ##_cmp_BSEARCH_CMP_FN(const void *, const void *); static int nm ##_cmp(type1 const *, type2 const *); scope type2 * OBJ_bsearch_ ##nm(type1 *key, type2 const *base, int num) #define DECLARE_OBJ_BSEARCH_CMP_FN(type1,type2,cmp) _DECLARE_OBJ_BSEARCH_CMP_FN(static, type1, type2, cmp) #define DECLARE_OBJ_BSEARCH_GLOBAL_CMP_FN(type1,type2,nm) type2 * OBJ_bsearch_ ##nm(type1 *key, type2 const *base, int num) # 1058 "/usr/include/openssl/objects.h" 3 4 #define IMPLEMENT_OBJ_BSEARCH_CMP_FN(type1,type2,nm) static int nm ##_cmp_BSEARCH_CMP_FN(const void *a_, const void *b_) { type1 const *a = a_; type2 const *b = b_; return nm ##_cmp(a,b); } static type2 *OBJ_bsearch_ ##nm(type1 *key, type2 const *base, int num) { return (type2 *)OBJ_bsearch_(key, base, num, sizeof(type2), nm ##_cmp_BSEARCH_CMP_FN); } extern void dummy_prototype(void) # 1072 "/usr/include/openssl/objects.h" 3 4 #define IMPLEMENT_OBJ_BSEARCH_GLOBAL_CMP_FN(type1,type2,nm) static int nm ##_cmp_BSEARCH_CMP_FN(const void *a_, const void *b_) { type1 const *a = a_; type2 const *b = b_; return nm ##_cmp(a,b); } type2 *OBJ_bsearch_ ##nm(type1 *key, type2 const *base, int num) { return (type2 *)OBJ_bsearch_(key, base, num, sizeof(type2), nm ##_cmp_BSEARCH_CMP_FN); } extern void dummy_prototype(void) # 1086 "/usr/include/openssl/objects.h" 3 4 #define OBJ_bsearch(type1,key,type2,base,num,cmp) ((type2 *)OBJ_bsearch_(CHECKED_PTR_OF(type1,key),CHECKED_PTR_OF(type2,base), num,sizeof(type2), ((void)CHECKED_PTR_OF(type1,cmp ##_type_1), (void)CHECKED_PTR_OF(type2,cmp ##_type_2), cmp ##_BSEARCH_CMP_FN))) #define OBJ_bsearch_ex(type1,key,type2,base,num,cmp,flags) ((type2 *)OBJ_bsearch_ex_(CHECKED_PTR_OF(type1,key),CHECKED_PTR_OF(type2,base), num,sizeof(type2), ((void)CHECKED_PTR_OF(type1,cmp ##_type_1), (void)type_2=CHECKED_PTR_OF(type2,cmp ##_type_2), cmp ##_BSEARCH_CMP_FN)),flags) int OBJ_new_nid(int num); int OBJ_add_object(const ASN1_OBJECT *obj); int OBJ_create(const char *oid,const char *sn,const char *ln); void OBJ_cleanup(void ); int OBJ_create_objects(BIO *in); int OBJ_find_sigid_algs(int signid, int *pdig_nid, int *ppkey_nid); int OBJ_find_sigid_by_algs(int *psignid, int dig_nid, int pkey_nid); int OBJ_add_sigid(int signid, int dig_id, int pkey_id); void OBJ_sigid_free(void); extern int obj_cleanup_defer; void check_defer(int nid); void ERR_load_OBJ_strings(void); #define OBJ_F_OBJ_ADD_OBJECT 105 #define OBJ_F_OBJ_CREATE 100 #define OBJ_F_OBJ_DUP 101 #define OBJ_F_OBJ_NAME_NEW_INDEX 106 #define OBJ_F_OBJ_NID2LN 102 #define OBJ_F_OBJ_NID2OBJ 103 #define OBJ_F_OBJ_NID2SN 104 #define OBJ_R_MALLOC_FAILURE 100 #define OBJ_R_UNKNOWN_NID 101 # 95 "/usr/include/openssl/evp.h" 2 3 4 #define EVP_PK_RSA 0x0001 #define EVP_PK_DSA 0x0002 #define EVP_PK_DH 0x0004 #define EVP_PK_EC 0x0008 #define EVP_PKT_SIGN 0x0010 #define EVP_PKT_ENC 0x0020 #define EVP_PKT_EXCH 0x0040 #define EVP_PKS_RSA 0x0100 #define EVP_PKS_DSA 0x0200 #define EVP_PKS_EC 0x0400 #define EVP_PKT_EXP 0x1000 #define EVP_PKEY_NONE NID_undef #define EVP_PKEY_RSA NID_rsaEncryption #define EVP_PKEY_RSA2 NID_rsa #define EVP_PKEY_DSA NID_dsa #define EVP_PKEY_DSA1 NID_dsa_2 #define EVP_PKEY_DSA2 NID_dsaWithSHA #define EVP_PKEY_DSA3 NID_dsaWithSHA1 #define EVP_PKEY_DSA4 NID_dsaWithSHA1_2 #define EVP_PKEY_DH NID_dhKeyAgreement #define EVP_PKEY_EC NID_X9_62_id_ecPublicKey #define EVP_PKEY_HMAC NID_hmac #define EVP_PKEY_CMAC NID_cmac # 128 "/usr/include/openssl/evp.h" 3 4 struct evp_pkey_st { int type; int save_type; int references; const EVP_PKEY_ASN1_METHOD *ameth; ENGINE *engine; union { char *ptr; struct rsa_st *rsa; struct dsa_st *dsa; struct dh_st *dh; struct ec_key_st *ec; } pkey; int save_parameters; struct stack_st_X509_ATTRIBUTE *attributes; } ; #define EVP_PKEY_MO_SIGN 0x0001 #define EVP_PKEY_MO_VERIFY 0x0002 #define EVP_PKEY_MO_ENCRYPT 0x0004 #define EVP_PKEY_MO_DECRYPT 0x0008 struct env_md_st { int type; int pkey_type; int md_size; unsigned long flags; int (*init)(EVP_MD_CTX *ctx); int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count); int (*final)(EVP_MD_CTX *ctx,unsigned char *md); int (*copy)(EVP_MD_CTX *to,const EVP_MD_CTX *from); int (*cleanup)(EVP_MD_CTX *ctx); int (*sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, void *key); int (*verify)(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, void *key); int required_pkey_type[5]; int block_size; int ctx_size; int (*md_ctrl)(EVP_MD_CTX *ctx, int cmd, int p1, void *p2); } ; typedef int evp_sign_method(int type,const unsigned char *m, unsigned int m_length,unsigned char *sigret, unsigned int *siglen, void *key); typedef int evp_verify_method(int type,const unsigned char *m, unsigned int m_length,const unsigned char *sigbuf, unsigned int siglen, void *key); #define EVP_MD_FLAG_ONESHOT 0x0001 #define EVP_MD_FLAG_PKEY_DIGEST 0x0002 #define EVP_MD_FLAG_PKEY_METHOD_SIGNATURE 0x0004 #define EVP_MD_FLAG_DIGALGID_MASK 0x0018 #define EVP_MD_FLAG_DIGALGID_NULL 0x0000 #define EVP_MD_FLAG_DIGALGID_ABSENT 0x0008 #define EVP_MD_FLAG_DIGALGID_CUSTOM 0x0018 #define EVP_MD_FLAG_FIPS 0x0400 #define EVP_MD_CTRL_DIGALGID 0x1 #define EVP_MD_CTRL_MICALG 0x2 #define EVP_MD_CTRL_ALG_CTRL 0x1000 #define EVP_PKEY_NULL_method NULL,NULL,{0,0,0,0} #define EVP_PKEY_DSA_method (evp_sign_method *)DSA_sign, (evp_verify_method *)DSA_verify, {EVP_PKEY_DSA,EVP_PKEY_DSA2,EVP_PKEY_DSA3, EVP_PKEY_DSA4,0} # 243 "/usr/include/openssl/evp.h" 3 4 #define EVP_PKEY_ECDSA_method (evp_sign_method *)ECDSA_sign, (evp_verify_method *)ECDSA_verify, {EVP_PKEY_EC,0,0,0} #define EVP_PKEY_RSA_method (evp_sign_method *)RSA_sign, (evp_verify_method *)RSA_verify, {EVP_PKEY_RSA,EVP_PKEY_RSA2,0,0} #define EVP_PKEY_RSA_ASN1_OCTET_STRING_method (evp_sign_method *)RSA_sign_ASN1_OCTET_STRING, (evp_verify_method *)RSA_verify_ASN1_OCTET_STRING, {EVP_PKEY_RSA,EVP_PKEY_RSA2,0,0} # 265 "/usr/include/openssl/evp.h" 3 4 struct env_md_ctx_st { const EVP_MD *digest; ENGINE *engine; unsigned long flags; void *md_data; EVP_PKEY_CTX *pctx; int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count); } ; #define EVP_MD_CTX_FLAG_ONESHOT 0x0001 #define EVP_MD_CTX_FLAG_CLEANED 0x0002 #define EVP_MD_CTX_FLAG_REUSE 0x0004 #define EVP_MD_CTX_FLAG_NON_FIPS_ALLOW 0x0008 #define EVP_MD_CTX_FLAG_PAD_MASK 0xF0 #define EVP_MD_CTX_FLAG_PAD_PKCS1 0x00 #define EVP_MD_CTX_FLAG_PAD_X931 0x10 #define EVP_MD_CTX_FLAG_PAD_PSS 0x20 #define EVP_MD_CTX_FLAG_NO_INIT 0x0100 struct evp_cipher_st { int nid; int block_size; int key_len; int iv_len; unsigned long flags; int (*init)(EVP_CIPHER_CTX *ctx, const unsigned char *key, const unsigned char *iv, int enc); int (*do_cipher)(EVP_CIPHER_CTX *ctx, unsigned char *out, const unsigned char *in, size_t inl); int (*cleanup)(EVP_CIPHER_CTX *); int ctx_size; int (*set_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *); int (*get_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *); int (*ctrl)(EVP_CIPHER_CTX *, int type, int arg, void *ptr); void *app_data; } ; #define EVP_CIPH_STREAM_CIPHER 0x0 #define EVP_CIPH_ECB_MODE 0x1 #define EVP_CIPH_CBC_MODE 0x2 #define EVP_CIPH_CFB_MODE 0x3 #define EVP_CIPH_OFB_MODE 0x4 #define EVP_CIPH_CTR_MODE 0x5 #define EVP_CIPH_GCM_MODE 0x6 #define EVP_CIPH_CCM_MODE 0x7 #define EVP_CIPH_XTS_MODE 0x10001 #define EVP_CIPH_MODE 0xF0007 #define EVP_CIPH_VARIABLE_LENGTH 0x8 #define EVP_CIPH_CUSTOM_IV 0x10 #define EVP_CIPH_ALWAYS_CALL_INIT 0x20 #define EVP_CIPH_CTRL_INIT 0x40 #define EVP_CIPH_CUSTOM_KEY_LENGTH 0x80 #define EVP_CIPH_NO_PADDING 0x100 #define EVP_CIPH_RAND_KEY 0x200 #define EVP_CIPH_CUSTOM_COPY 0x400 #define EVP_CIPH_FLAG_DEFAULT_ASN1 0x1000 #define EVP_CIPH_FLAG_LENGTH_BITS 0x2000 #define EVP_CIPH_FLAG_FIPS 0x4000 #define EVP_CIPH_FLAG_NON_FIPS_ALLOW 0x8000 #define EVP_CIPH_FLAG_CUSTOM_CIPHER 0x100000 #define EVP_CIPH_FLAG_AEAD_CIPHER 0x200000 #define EVP_CTRL_INIT 0x0 #define EVP_CTRL_SET_KEY_LENGTH 0x1 #define EVP_CTRL_GET_RC2_KEY_BITS 0x2 #define EVP_CTRL_SET_RC2_KEY_BITS 0x3 #define EVP_CTRL_GET_RC5_ROUNDS 0x4 #define EVP_CTRL_SET_RC5_ROUNDS 0x5 #define EVP_CTRL_RAND_KEY 0x6 #define EVP_CTRL_PBE_PRF_NID 0x7 #define EVP_CTRL_COPY 0x8 #define EVP_CTRL_GCM_SET_IVLEN 0x9 #define EVP_CTRL_GCM_GET_TAG 0x10 #define EVP_CTRL_GCM_SET_TAG 0x11 #define EVP_CTRL_GCM_SET_IV_FIXED 0x12 #define EVP_CTRL_GCM_IV_GEN 0x13 #define EVP_CTRL_CCM_SET_IVLEN EVP_CTRL_GCM_SET_IVLEN #define EVP_CTRL_CCM_GET_TAG EVP_CTRL_GCM_GET_TAG #define EVP_CTRL_CCM_SET_TAG EVP_CTRL_GCM_SET_TAG #define EVP_CTRL_CCM_SET_L 0x14 #define EVP_CTRL_CCM_SET_MSGLEN 0x15 #define EVP_CTRL_AEAD_TLS1_AAD 0x16 #define EVP_CTRL_AEAD_SET_MAC_KEY 0x17 #define EVP_CTRL_GCM_SET_IV_INV 0x18 #define EVP_GCM_TLS_FIXED_IV_LEN 4 #define EVP_GCM_TLS_EXPLICIT_IV_LEN 8 #define EVP_GCM_TLS_TAG_LEN 16 typedef struct evp_cipher_info_st { const EVP_CIPHER *cipher; unsigned char iv[16]; } EVP_CIPHER_INFO; struct evp_cipher_ctx_st { const EVP_CIPHER *cipher; ENGINE *engine; int encrypt; int buf_len; unsigned char oiv[16]; unsigned char iv[16]; unsigned char buf[32]; int num; void *app_data; int key_len; unsigned long flags; void *cipher_data; int final_used; int block_mask; unsigned char final[32]; } ; typedef struct evp_Encode_Ctx_st { int num; int length; unsigned char enc_data[80]; int line_num; int expect_nl; } EVP_ENCODE_CTX; typedef int (EVP_PBE_KEYGEN)(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); #define EVP_PKEY_assign_RSA(pkey,rsa) EVP_PKEY_assign((pkey),EVP_PKEY_RSA, (char *)(rsa)) #define EVP_PKEY_assign_DSA(pkey,dsa) EVP_PKEY_assign((pkey),EVP_PKEY_DSA, (char *)(dsa)) #define EVP_PKEY_assign_DH(pkey,dh) EVP_PKEY_assign((pkey),EVP_PKEY_DH, (char *)(dh)) #define EVP_PKEY_assign_EC_KEY(pkey,eckey) EVP_PKEY_assign((pkey),EVP_PKEY_EC, (char *)(eckey)) #define EVP_get_digestbynid(a) EVP_get_digestbyname(OBJ_nid2sn(a)) #define EVP_get_digestbyobj(a) EVP_get_digestbynid(OBJ_obj2nid(a)) #define EVP_get_cipherbynid(a) EVP_get_cipherbyname(OBJ_nid2sn(a)) #define EVP_get_cipherbyobj(a) EVP_get_cipherbynid(OBJ_obj2nid(a)) int EVP_MD_type(const EVP_MD *md); #define EVP_MD_nid(e) EVP_MD_type(e) #define EVP_MD_name(e) OBJ_nid2sn(EVP_MD_nid(e)) int EVP_MD_pkey_type(const EVP_MD *md); int EVP_MD_size(const EVP_MD *md); int EVP_MD_block_size(const EVP_MD *md); unsigned long EVP_MD_flags(const EVP_MD *md); const EVP_MD *EVP_MD_CTX_md(const EVP_MD_CTX *ctx); #define EVP_MD_CTX_size(e) EVP_MD_size(EVP_MD_CTX_md(e)) #define EVP_MD_CTX_block_size(e) EVP_MD_block_size(EVP_MD_CTX_md(e)) #define EVP_MD_CTX_type(e) EVP_MD_type(EVP_MD_CTX_md(e)) int EVP_CIPHER_nid(const EVP_CIPHER *cipher); #define EVP_CIPHER_name(e) OBJ_nid2sn(EVP_CIPHER_nid(e)) int EVP_CIPHER_block_size(const EVP_CIPHER *cipher); int EVP_CIPHER_key_length(const EVP_CIPHER *cipher); int EVP_CIPHER_iv_length(const EVP_CIPHER *cipher); unsigned long EVP_CIPHER_flags(const EVP_CIPHER *cipher); #define EVP_CIPHER_mode(e) (EVP_CIPHER_flags(e) & EVP_CIPH_MODE) const EVP_CIPHER * EVP_CIPHER_CTX_cipher(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_nid(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_block_size(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_key_length(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_iv_length(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_copy(EVP_CIPHER_CTX *out, const EVP_CIPHER_CTX *in); void * EVP_CIPHER_CTX_get_app_data(const EVP_CIPHER_CTX *ctx); void EVP_CIPHER_CTX_set_app_data(EVP_CIPHER_CTX *ctx, void *data); #define EVP_CIPHER_CTX_type(c) EVP_CIPHER_type(EVP_CIPHER_CTX_cipher(c)) unsigned long EVP_CIPHER_CTX_flags(const EVP_CIPHER_CTX *ctx); #define EVP_CIPHER_CTX_mode(e) (EVP_CIPHER_CTX_flags(e) & EVP_CIPH_MODE) #define EVP_ENCODE_LENGTH(l) (((l+2)/3*4)+(l/48+1)*2+80) #define EVP_DECODE_LENGTH(l) ((l+3)/4*3+80) #define EVP_SignInit_ex(a,b,c) EVP_DigestInit_ex(a,b,c) #define EVP_SignInit(a,b) EVP_DigestInit(a,b) #define EVP_SignUpdate(a,b,c) EVP_DigestUpdate(a,b,c) #define EVP_VerifyInit_ex(a,b,c) EVP_DigestInit_ex(a,b,c) #define EVP_VerifyInit(a,b) EVP_DigestInit(a,b) #define EVP_VerifyUpdate(a,b,c) EVP_DigestUpdate(a,b,c) #define EVP_OpenUpdate(a,b,c,d,e) EVP_DecryptUpdate(a,b,c,d,e) #define EVP_SealUpdate(a,b,c,d,e) EVP_EncryptUpdate(a,b,c,d,e) #define EVP_DigestSignUpdate(a,b,c) EVP_DigestUpdate(a,b,c) #define EVP_DigestVerifyUpdate(a,b,c) EVP_DigestUpdate(a,b,c) #define BIO_set_md(b,md) BIO_ctrl(b,BIO_C_SET_MD,0,(char *)md) #define BIO_get_md(b,mdp) BIO_ctrl(b,BIO_C_GET_MD,0,(char *)mdp) #define BIO_get_md_ctx(b,mdcp) BIO_ctrl(b,BIO_C_GET_MD_CTX,0,(char *)mdcp) #define BIO_set_md_ctx(b,mdcp) BIO_ctrl(b,BIO_C_SET_MD_CTX,0,(char *)mdcp) #define BIO_get_cipher_status(b) BIO_ctrl(b,BIO_C_GET_CIPHER_STATUS,0,NULL) #define BIO_get_cipher_ctx(b,c_pp) BIO_ctrl(b,BIO_C_GET_CIPHER_CTX,0,(char *)c_pp) int EVP_Cipher(EVP_CIPHER_CTX *c, unsigned char *out, const unsigned char *in, unsigned int inl); #define EVP_add_cipher_alias(n,alias) OBJ_NAME_add((alias),OBJ_NAME_TYPE_CIPHER_METH|OBJ_NAME_ALIAS,(n)) #define EVP_add_digest_alias(n,alias) OBJ_NAME_add((alias),OBJ_NAME_TYPE_MD_METH|OBJ_NAME_ALIAS,(n)) #define EVP_delete_cipher_alias(alias) OBJ_NAME_remove(alias,OBJ_NAME_TYPE_CIPHER_METH|OBJ_NAME_ALIAS); #define EVP_delete_digest_alias(alias) OBJ_NAME_remove(alias,OBJ_NAME_TYPE_MD_METH|OBJ_NAME_ALIAS); void EVP_MD_CTX_init(EVP_MD_CTX *ctx); int EVP_MD_CTX_cleanup(EVP_MD_CTX *ctx); EVP_MD_CTX *EVP_MD_CTX_create(void); void EVP_MD_CTX_destroy(EVP_MD_CTX *ctx); int EVP_MD_CTX_copy_ex(EVP_MD_CTX *out,const EVP_MD_CTX *in); void EVP_MD_CTX_set_flags(EVP_MD_CTX *ctx, int flags); void EVP_MD_CTX_clear_flags(EVP_MD_CTX *ctx, int flags); int EVP_MD_CTX_test_flags(const EVP_MD_CTX *ctx,int flags); int EVP_DigestInit_ex(EVP_MD_CTX *ctx, const EVP_MD *type, ENGINE *impl); int EVP_DigestUpdate(EVP_MD_CTX *ctx,const void *d, size_t cnt); int EVP_DigestFinal_ex(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s); int EVP_Digest(const void *data, size_t count, unsigned char *md, unsigned int *size, const EVP_MD *type, ENGINE *impl); int EVP_MD_CTX_copy(EVP_MD_CTX *out,const EVP_MD_CTX *in); int EVP_DigestInit(EVP_MD_CTX *ctx, const EVP_MD *type); int EVP_DigestFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s); int EVP_read_pw_string(char *buf,int length,const char *prompt,int verify); int EVP_read_pw_string_min(char *buf,int minlen,int maxlen,const char *prompt,int verify); void EVP_set_pw_prompt(const char *prompt); char * EVP_get_pw_prompt(void); int EVP_BytesToKey(const EVP_CIPHER *type,const EVP_MD *md, const unsigned char *salt, const unsigned char *data, int datal, int count, unsigned char *key,unsigned char *iv); void EVP_CIPHER_CTX_set_flags(EVP_CIPHER_CTX *ctx, int flags); void EVP_CIPHER_CTX_clear_flags(EVP_CIPHER_CTX *ctx, int flags); int EVP_CIPHER_CTX_test_flags(const EVP_CIPHER_CTX *ctx,int flags); int EVP_EncryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv); int EVP_EncryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv); int EVP_EncryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_EncryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_EncryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_DecryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv); int EVP_DecryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv); int EVP_DecryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_DecryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_DecryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_CipherInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key,const unsigned char *iv, int enc); int EVP_CipherInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key,const unsigned char *iv, int enc); int EVP_CipherUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_CipherFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_CipherFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_SignFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s, EVP_PKEY *pkey); int EVP_VerifyFinal(EVP_MD_CTX *ctx,const unsigned char *sigbuf, unsigned int siglen,EVP_PKEY *pkey); int EVP_DigestSignInit(EVP_MD_CTX *ctx, EVP_PKEY_CTX **pctx, const EVP_MD *type, ENGINE *e, EVP_PKEY *pkey); int EVP_DigestSignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, size_t *siglen); int EVP_DigestVerifyInit(EVP_MD_CTX *ctx, EVP_PKEY_CTX **pctx, const EVP_MD *type, ENGINE *e, EVP_PKEY *pkey); int EVP_DigestVerifyFinal(EVP_MD_CTX *ctx, unsigned char *sig, size_t siglen); int EVP_OpenInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *type, const unsigned char *ek, int ekl, const unsigned char *iv, EVP_PKEY *priv); int EVP_OpenFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_SealInit(EVP_CIPHER_CTX *ctx, const EVP_CIPHER *type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk); int EVP_SealFinal(EVP_CIPHER_CTX *ctx,unsigned char *out,int *outl); void EVP_EncodeInit(EVP_ENCODE_CTX *ctx); void EVP_EncodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in,int inl); void EVP_EncodeFinal(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl); int EVP_EncodeBlock(unsigned char *t, const unsigned char *f, int n); void EVP_DecodeInit(EVP_ENCODE_CTX *ctx); int EVP_DecodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in, int inl); int EVP_DecodeFinal(EVP_ENCODE_CTX *ctx, unsigned char *out, int *outl); int EVP_DecodeBlock(unsigned char *t, const unsigned char *f, int n); void EVP_CIPHER_CTX_init(EVP_CIPHER_CTX *a); int EVP_CIPHER_CTX_cleanup(EVP_CIPHER_CTX *a); EVP_CIPHER_CTX *EVP_CIPHER_CTX_new(void); void EVP_CIPHER_CTX_free(EVP_CIPHER_CTX *a); int EVP_CIPHER_CTX_set_key_length(EVP_CIPHER_CTX *x, int keylen); int EVP_CIPHER_CTX_set_padding(EVP_CIPHER_CTX *c, int pad); int EVP_CIPHER_CTX_ctrl(EVP_CIPHER_CTX *ctx, int type, int arg, void *ptr); int EVP_CIPHER_CTX_rand_key(EVP_CIPHER_CTX *ctx, unsigned char *key); BIO_METHOD *BIO_f_md(void); BIO_METHOD *BIO_f_base64(void); BIO_METHOD *BIO_f_cipher(void); BIO_METHOD *BIO_f_reliable(void); void BIO_set_cipher(BIO *b,const EVP_CIPHER *c,const unsigned char *k, const unsigned char *i, int enc); const EVP_MD *EVP_md_null(void); const EVP_MD *EVP_md4(void); const EVP_MD *EVP_md5(void); const EVP_MD *EVP_sha(void); const EVP_MD *EVP_sha1(void); const EVP_MD *EVP_dss(void); const EVP_MD *EVP_dss1(void); const EVP_MD *EVP_ecdsa(void); const EVP_MD *EVP_sha224(void); const EVP_MD *EVP_sha256(void); const EVP_MD *EVP_sha384(void); const EVP_MD *EVP_sha512(void); const EVP_MD *EVP_ripemd160(void); const EVP_MD *EVP_whirlpool(void); const EVP_CIPHER *EVP_enc_null(void); const EVP_CIPHER *EVP_des_ecb(void); const EVP_CIPHER *EVP_des_ede(void); const EVP_CIPHER *EVP_des_ede3(void); const EVP_CIPHER *EVP_des_ede_ecb(void); const EVP_CIPHER *EVP_des_ede3_ecb(void); const EVP_CIPHER *EVP_des_cfb64(void); #define EVP_des_cfb EVP_des_cfb64 const EVP_CIPHER *EVP_des_cfb1(void); const EVP_CIPHER *EVP_des_cfb8(void); const EVP_CIPHER *EVP_des_ede_cfb64(void); #define EVP_des_ede_cfb EVP_des_ede_cfb64 const EVP_CIPHER *EVP_des_ede3_cfb64(void); #define EVP_des_ede3_cfb EVP_des_ede3_cfb64 const EVP_CIPHER *EVP_des_ede3_cfb1(void); const EVP_CIPHER *EVP_des_ede3_cfb8(void); const EVP_CIPHER *EVP_des_ofb(void); const EVP_CIPHER *EVP_des_ede_ofb(void); const EVP_CIPHER *EVP_des_ede3_ofb(void); const EVP_CIPHER *EVP_des_cbc(void); const EVP_CIPHER *EVP_des_ede_cbc(void); const EVP_CIPHER *EVP_des_ede3_cbc(void); const EVP_CIPHER *EVP_desx_cbc(void); # 740 "/usr/include/openssl/evp.h" 3 4 const EVP_CIPHER *EVP_rc4(void); const EVP_CIPHER *EVP_rc4_40(void); const EVP_CIPHER *EVP_rc4_hmac_md5(void); # 754 "/usr/include/openssl/evp.h" 3 4 const EVP_CIPHER *EVP_rc2_ecb(void); const EVP_CIPHER *EVP_rc2_cbc(void); const EVP_CIPHER *EVP_rc2_40_cbc(void); const EVP_CIPHER *EVP_rc2_64_cbc(void); const EVP_CIPHER *EVP_rc2_cfb64(void); #define EVP_rc2_cfb EVP_rc2_cfb64 const EVP_CIPHER *EVP_rc2_ofb(void); const EVP_CIPHER *EVP_bf_ecb(void); const EVP_CIPHER *EVP_bf_cbc(void); const EVP_CIPHER *EVP_bf_cfb64(void); #define EVP_bf_cfb EVP_bf_cfb64 const EVP_CIPHER *EVP_bf_ofb(void); const EVP_CIPHER *EVP_cast5_ecb(void); const EVP_CIPHER *EVP_cast5_cbc(void); const EVP_CIPHER *EVP_cast5_cfb64(void); #define EVP_cast5_cfb EVP_cast5_cfb64 const EVP_CIPHER *EVP_cast5_ofb(void); # 784 "/usr/include/openssl/evp.h" 3 4 const EVP_CIPHER *EVP_aes_128_ecb(void); const EVP_CIPHER *EVP_aes_128_cbc(void); const EVP_CIPHER *EVP_aes_128_cfb1(void); const EVP_CIPHER *EVP_aes_128_cfb8(void); const EVP_CIPHER *EVP_aes_128_cfb128(void); #define EVP_aes_128_cfb EVP_aes_128_cfb128 const EVP_CIPHER *EVP_aes_128_ofb(void); const EVP_CIPHER *EVP_aes_128_ctr(void); const EVP_CIPHER *EVP_aes_128_gcm(void); const EVP_CIPHER *EVP_aes_128_ccm(void); const EVP_CIPHER *EVP_aes_128_xts(void); const EVP_CIPHER *EVP_aes_192_ecb(void); const EVP_CIPHER *EVP_aes_192_cbc(void); const EVP_CIPHER *EVP_aes_192_cfb1(void); const EVP_CIPHER *EVP_aes_192_cfb8(void); const EVP_CIPHER *EVP_aes_192_cfb128(void); #define EVP_aes_192_cfb EVP_aes_192_cfb128 const EVP_CIPHER *EVP_aes_192_ofb(void); const EVP_CIPHER *EVP_aes_192_ctr(void); const EVP_CIPHER *EVP_aes_192_gcm(void); const EVP_CIPHER *EVP_aes_192_ccm(void); const EVP_CIPHER *EVP_aes_256_ecb(void); const EVP_CIPHER *EVP_aes_256_cbc(void); const EVP_CIPHER *EVP_aes_256_cfb1(void); const EVP_CIPHER *EVP_aes_256_cfb8(void); const EVP_CIPHER *EVP_aes_256_cfb128(void); #define EVP_aes_256_cfb EVP_aes_256_cfb128 const EVP_CIPHER *EVP_aes_256_ofb(void); const EVP_CIPHER *EVP_aes_256_ctr(void); const EVP_CIPHER *EVP_aes_256_gcm(void); const EVP_CIPHER *EVP_aes_256_ccm(void); const EVP_CIPHER *EVP_aes_256_xts(void); const EVP_CIPHER *EVP_aes_128_cbc_hmac_sha1(void); const EVP_CIPHER *EVP_aes_256_cbc_hmac_sha1(void); const EVP_CIPHER *EVP_camellia_128_ecb(void); const EVP_CIPHER *EVP_camellia_128_cbc(void); const EVP_CIPHER *EVP_camellia_128_cfb1(void); const EVP_CIPHER *EVP_camellia_128_cfb8(void); const EVP_CIPHER *EVP_camellia_128_cfb128(void); #define EVP_camellia_128_cfb EVP_camellia_128_cfb128 const EVP_CIPHER *EVP_camellia_128_ofb(void); const EVP_CIPHER *EVP_camellia_192_ecb(void); const EVP_CIPHER *EVP_camellia_192_cbc(void); const EVP_CIPHER *EVP_camellia_192_cfb1(void); const EVP_CIPHER *EVP_camellia_192_cfb8(void); const EVP_CIPHER *EVP_camellia_192_cfb128(void); #define EVP_camellia_192_cfb EVP_camellia_192_cfb128 const EVP_CIPHER *EVP_camellia_192_ofb(void); const EVP_CIPHER *EVP_camellia_256_ecb(void); const EVP_CIPHER *EVP_camellia_256_cbc(void); const EVP_CIPHER *EVP_camellia_256_cfb1(void); const EVP_CIPHER *EVP_camellia_256_cfb8(void); const EVP_CIPHER *EVP_camellia_256_cfb128(void); #define EVP_camellia_256_cfb EVP_camellia_256_cfb128 const EVP_CIPHER *EVP_camellia_256_ofb(void); const EVP_CIPHER *EVP_seed_ecb(void); const EVP_CIPHER *EVP_seed_cbc(void); const EVP_CIPHER *EVP_seed_cfb128(void); #define EVP_seed_cfb EVP_seed_cfb128 const EVP_CIPHER *EVP_seed_ofb(void); void OPENSSL_add_all_algorithms_noconf(void); void OPENSSL_add_all_algorithms_conf(void); #define OpenSSL_add_all_algorithms() OPENSSL_add_all_algorithms_noconf() void OpenSSL_add_all_ciphers(void); void OpenSSL_add_all_digests(void); #define SSLeay_add_all_algorithms() OpenSSL_add_all_algorithms() #define SSLeay_add_all_ciphers() OpenSSL_add_all_ciphers() #define SSLeay_add_all_digests() OpenSSL_add_all_digests() int EVP_add_cipher(const EVP_CIPHER *cipher); int EVP_add_digest(const EVP_MD *digest); const EVP_CIPHER *EVP_get_cipherbyname(const char *name); const EVP_MD *EVP_get_digestbyname(const char *name); void EVP_cleanup(void); void EVP_CIPHER_do_all(void (*fn)(const EVP_CIPHER *ciph, const char *from, const char *to, void *x), void *arg); void EVP_CIPHER_do_all_sorted(void (*fn)(const EVP_CIPHER *ciph, const char *from, const char *to, void *x), void *arg); void EVP_MD_do_all(void (*fn)(const EVP_MD *ciph, const char *from, const char *to, void *x), void *arg); void EVP_MD_do_all_sorted(void (*fn)(const EVP_MD *ciph, const char *from, const char *to, void *x), void *arg); int EVP_PKEY_decrypt_old(unsigned char *dec_key, const unsigned char *enc_key,int enc_key_len, EVP_PKEY *private_key); int EVP_PKEY_encrypt_old(unsigned char *enc_key, const unsigned char *key,int key_len, EVP_PKEY *pub_key); int EVP_PKEY_type(int type); int EVP_PKEY_id(const EVP_PKEY *pkey); int EVP_PKEY_base_id(const EVP_PKEY *pkey); int EVP_PKEY_bits(EVP_PKEY *pkey); int EVP_PKEY_size(EVP_PKEY *pkey); int EVP_PKEY_set_type(EVP_PKEY *pkey,int type); int EVP_PKEY_set_type_str(EVP_PKEY *pkey, const char *str, int len); int EVP_PKEY_assign(EVP_PKEY *pkey,int type,void *key); void * EVP_PKEY_get0(EVP_PKEY *pkey); struct rsa_st; int EVP_PKEY_set1_RSA(EVP_PKEY *pkey,struct rsa_st *key); struct rsa_st *EVP_PKEY_get1_RSA(EVP_PKEY *pkey); struct dsa_st; int EVP_PKEY_set1_DSA(EVP_PKEY *pkey,struct dsa_st *key); struct dsa_st *EVP_PKEY_get1_DSA(EVP_PKEY *pkey); struct dh_st; int EVP_PKEY_set1_DH(EVP_PKEY *pkey,struct dh_st *key); struct dh_st *EVP_PKEY_get1_DH(EVP_PKEY *pkey); struct ec_key_st; int EVP_PKEY_set1_EC_KEY(EVP_PKEY *pkey,struct ec_key_st *key); struct ec_key_st *EVP_PKEY_get1_EC_KEY(EVP_PKEY *pkey); EVP_PKEY * EVP_PKEY_new(void); void EVP_PKEY_free(EVP_PKEY *pkey); EVP_PKEY * d2i_PublicKey(int type,EVP_PKEY **a, const unsigned char **pp, long length); int i2d_PublicKey(EVP_PKEY *a, unsigned char **pp); EVP_PKEY * d2i_PrivateKey(int type,EVP_PKEY **a, const unsigned char **pp, long length); EVP_PKEY * d2i_AutoPrivateKey(EVP_PKEY **a, const unsigned char **pp, long length); int i2d_PrivateKey(EVP_PKEY *a, unsigned char **pp); int EVP_PKEY_copy_parameters(EVP_PKEY *to, const EVP_PKEY *from); int EVP_PKEY_missing_parameters(const EVP_PKEY *pkey); int EVP_PKEY_save_parameters(EVP_PKEY *pkey,int mode); int EVP_PKEY_cmp_parameters(const EVP_PKEY *a, const EVP_PKEY *b); int EVP_PKEY_cmp(const EVP_PKEY *a, const EVP_PKEY *b); int EVP_PKEY_print_public(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_print_private(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_print_params(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_get_default_digest_nid(EVP_PKEY *pkey, int *pnid); int EVP_CIPHER_type(const EVP_CIPHER *ctx); int EVP_CIPHER_param_to_asn1(EVP_CIPHER_CTX *c, ASN1_TYPE *type); int EVP_CIPHER_asn1_to_param(EVP_CIPHER_CTX *c, ASN1_TYPE *type); int EVP_CIPHER_set_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type); int EVP_CIPHER_get_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type); int PKCS5_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); int PKCS5_PBKDF2_HMAC_SHA1(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, int keylen, unsigned char *out); int PKCS5_PBKDF2_HMAC(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, const EVP_MD *digest, int keylen, unsigned char *out); int PKCS5_v2_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); void PKCS5_PBE_add(void); int EVP_PBE_CipherInit (ASN1_OBJECT *pbe_obj, const char *pass, int passlen, ASN1_TYPE *param, EVP_CIPHER_CTX *ctx, int en_de); #define EVP_PBE_TYPE_OUTER 0x0 #define EVP_PBE_TYPE_PRF 0x1 int EVP_PBE_alg_add_type(int pbe_type, int pbe_nid, int cipher_nid, int md_nid, EVP_PBE_KEYGEN *keygen); int EVP_PBE_alg_add(int nid, const EVP_CIPHER *cipher, const EVP_MD *md, EVP_PBE_KEYGEN *keygen); int EVP_PBE_find(int type, int pbe_nid, int *pcnid, int *pmnid, EVP_PBE_KEYGEN **pkeygen); void EVP_PBE_cleanup(void); #define ASN1_PKEY_ALIAS 0x1 #define ASN1_PKEY_DYNAMIC 0x2 #define ASN1_PKEY_SIGPARAM_NULL 0x4 #define ASN1_PKEY_CTRL_PKCS7_SIGN 0x1 #define ASN1_PKEY_CTRL_PKCS7_ENCRYPT 0x2 #define ASN1_PKEY_CTRL_DEFAULT_MD_NID 0x3 #define ASN1_PKEY_CTRL_CMS_SIGN 0x5 #define ASN1_PKEY_CTRL_CMS_ENVELOPE 0x7 int EVP_PKEY_asn1_get_count(void); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_get0(int idx); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_find(ENGINE **pe, int type); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_find_str(ENGINE **pe, const char *str, int len); int EVP_PKEY_asn1_add0(const EVP_PKEY_ASN1_METHOD *ameth); int EVP_PKEY_asn1_add_alias(int to, int from); int EVP_PKEY_asn1_get0_info(int *ppkey_id, int *pkey_base_id, int *ppkey_flags, const char **pinfo, const char **ppem_str, const EVP_PKEY_ASN1_METHOD *ameth); const EVP_PKEY_ASN1_METHOD* EVP_PKEY_get0_asn1(EVP_PKEY *pkey); EVP_PKEY_ASN1_METHOD* EVP_PKEY_asn1_new(int id, int flags, const char *pem_str, const char *info); void EVP_PKEY_asn1_copy(EVP_PKEY_ASN1_METHOD *dst, const EVP_PKEY_ASN1_METHOD *src); void EVP_PKEY_asn1_free(EVP_PKEY_ASN1_METHOD *ameth); void EVP_PKEY_asn1_set_public(EVP_PKEY_ASN1_METHOD *ameth, int (*pub_decode)(EVP_PKEY *pk, X509_PUBKEY *pub), int (*pub_encode)(X509_PUBKEY *pub, const EVP_PKEY *pk), int (*pub_cmp)(const EVP_PKEY *a, const EVP_PKEY *b), int (*pub_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx), int (*pkey_size)(const EVP_PKEY *pk), int (*pkey_bits)(const EVP_PKEY *pk)); void EVP_PKEY_asn1_set_private(EVP_PKEY_ASN1_METHOD *ameth, int (*priv_decode)(EVP_PKEY *pk, PKCS8_PRIV_KEY_INFO *p8inf), int (*priv_encode)(PKCS8_PRIV_KEY_INFO *p8, const EVP_PKEY *pk), int (*priv_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx)); void EVP_PKEY_asn1_set_param(EVP_PKEY_ASN1_METHOD *ameth, int (*param_decode)(EVP_PKEY *pkey, const unsigned char **pder, int derlen), int (*param_encode)(const EVP_PKEY *pkey, unsigned char **pder), int (*param_missing)(const EVP_PKEY *pk), int (*param_copy)(EVP_PKEY *to, const EVP_PKEY *from), int (*param_cmp)(const EVP_PKEY *a, const EVP_PKEY *b), int (*param_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx)); void EVP_PKEY_asn1_set_free(EVP_PKEY_ASN1_METHOD *ameth, void (*pkey_free)(EVP_PKEY *pkey)); void EVP_PKEY_asn1_set_ctrl(EVP_PKEY_ASN1_METHOD *ameth, int (*pkey_ctrl)(EVP_PKEY *pkey, int op, long arg1, void *arg2)); #define EVP_PKEY_OP_UNDEFINED 0 #define EVP_PKEY_OP_PARAMGEN (1<<1) #define EVP_PKEY_OP_KEYGEN (1<<2) #define EVP_PKEY_OP_SIGN (1<<3) #define EVP_PKEY_OP_VERIFY (1<<4) #define EVP_PKEY_OP_VERIFYRECOVER (1<<5) #define EVP_PKEY_OP_SIGNCTX (1<<6) #define EVP_PKEY_OP_VERIFYCTX (1<<7) #define EVP_PKEY_OP_ENCRYPT (1<<8) #define EVP_PKEY_OP_DECRYPT (1<<9) #define EVP_PKEY_OP_DERIVE (1<<10) #define EVP_PKEY_OP_TYPE_SIG (EVP_PKEY_OP_SIGN | EVP_PKEY_OP_VERIFY | EVP_PKEY_OP_VERIFYRECOVER | EVP_PKEY_OP_SIGNCTX | EVP_PKEY_OP_VERIFYCTX) #define EVP_PKEY_OP_TYPE_CRYPT (EVP_PKEY_OP_ENCRYPT | EVP_PKEY_OP_DECRYPT) #define EVP_PKEY_OP_TYPE_NOGEN (EVP_PKEY_OP_SIG | EVP_PKEY_OP_CRYPT | EVP_PKEY_OP_DERIVE) #define EVP_PKEY_OP_TYPE_GEN (EVP_PKEY_OP_PARAMGEN | EVP_PKEY_OP_KEYGEN) #define EVP_PKEY_CTX_set_signature_md(ctx,md) EVP_PKEY_CTX_ctrl(ctx, -1, EVP_PKEY_OP_TYPE_SIG, EVP_PKEY_CTRL_MD, 0, (void *)md) #define EVP_PKEY_CTRL_MD 1 #define EVP_PKEY_CTRL_PEER_KEY 2 #define EVP_PKEY_CTRL_PKCS7_ENCRYPT 3 #define EVP_PKEY_CTRL_PKCS7_DECRYPT 4 #define EVP_PKEY_CTRL_PKCS7_SIGN 5 #define EVP_PKEY_CTRL_SET_MAC_KEY 6 #define EVP_PKEY_CTRL_DIGESTINIT 7 #define EVP_PKEY_CTRL_SET_IV 8 #define EVP_PKEY_CTRL_CMS_ENCRYPT 9 #define EVP_PKEY_CTRL_CMS_DECRYPT 10 #define EVP_PKEY_CTRL_CMS_SIGN 11 #define EVP_PKEY_CTRL_CIPHER 12 #define EVP_PKEY_ALG_CTRL 0x1000 #define EVP_PKEY_FLAG_AUTOARGLEN 2 #define EVP_PKEY_FLAG_SIGCTX_CUSTOM 4 const EVP_PKEY_METHOD *EVP_PKEY_meth_find(int type); EVP_PKEY_METHOD* EVP_PKEY_meth_new(int id, int flags); void EVP_PKEY_meth_get0_info(int *ppkey_id, int *pflags, const EVP_PKEY_METHOD *meth); void EVP_PKEY_meth_copy(EVP_PKEY_METHOD *dst, const EVP_PKEY_METHOD *src); void EVP_PKEY_meth_free(EVP_PKEY_METHOD *pmeth); int EVP_PKEY_meth_add0(const EVP_PKEY_METHOD *pmeth); EVP_PKEY_CTX *EVP_PKEY_CTX_new(EVP_PKEY *pkey, ENGINE *e); EVP_PKEY_CTX *EVP_PKEY_CTX_new_id(int id, ENGINE *e); EVP_PKEY_CTX *EVP_PKEY_CTX_dup(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_free(EVP_PKEY_CTX *ctx); int EVP_PKEY_CTX_ctrl(EVP_PKEY_CTX *ctx, int keytype, int optype, int cmd, int p1, void *p2); int EVP_PKEY_CTX_ctrl_str(EVP_PKEY_CTX *ctx, const char *type, const char *value); int EVP_PKEY_CTX_get_operation(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_set0_keygen_info(EVP_PKEY_CTX *ctx, int *dat, int datlen); EVP_PKEY *EVP_PKEY_new_mac_key(int type, ENGINE *e, const unsigned char *key, int keylen); void EVP_PKEY_CTX_set_data(EVP_PKEY_CTX *ctx, void *data); void *EVP_PKEY_CTX_get_data(EVP_PKEY_CTX *ctx); EVP_PKEY *EVP_PKEY_CTX_get0_pkey(EVP_PKEY_CTX *ctx); EVP_PKEY *EVP_PKEY_CTX_get0_peerkey(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_set_app_data(EVP_PKEY_CTX *ctx, void *data); void *EVP_PKEY_CTX_get_app_data(EVP_PKEY_CTX *ctx); int EVP_PKEY_sign_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_sign(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen); int EVP_PKEY_verify_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_verify(EVP_PKEY_CTX *ctx, const unsigned char *sig, size_t siglen, const unsigned char *tbs, size_t tbslen); int EVP_PKEY_verify_recover_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_verify_recover(EVP_PKEY_CTX *ctx, unsigned char *rout, size_t *routlen, const unsigned char *sig, size_t siglen); int EVP_PKEY_encrypt_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_encrypt(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen); int EVP_PKEY_decrypt_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_decrypt(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen); int EVP_PKEY_derive_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_derive_set_peer(EVP_PKEY_CTX *ctx, EVP_PKEY *peer); int EVP_PKEY_derive(EVP_PKEY_CTX *ctx, unsigned char *key, size_t *keylen); typedef int EVP_PKEY_gen_cb(EVP_PKEY_CTX *ctx); int EVP_PKEY_paramgen_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_paramgen(EVP_PKEY_CTX *ctx, EVP_PKEY **ppkey); int EVP_PKEY_keygen_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_keygen(EVP_PKEY_CTX *ctx, EVP_PKEY **ppkey); void EVP_PKEY_CTX_set_cb(EVP_PKEY_CTX *ctx, EVP_PKEY_gen_cb *cb); EVP_PKEY_gen_cb *EVP_PKEY_CTX_get_cb(EVP_PKEY_CTX *ctx); int EVP_PKEY_CTX_get_keygen_info(EVP_PKEY_CTX *ctx, int idx); void EVP_PKEY_meth_set_init(EVP_PKEY_METHOD *pmeth, int (*init)(EVP_PKEY_CTX *ctx)); void EVP_PKEY_meth_set_copy(EVP_PKEY_METHOD *pmeth, int (*copy)(EVP_PKEY_CTX *dst, EVP_PKEY_CTX *src)); void EVP_PKEY_meth_set_cleanup(EVP_PKEY_METHOD *pmeth, void (*cleanup)(EVP_PKEY_CTX *ctx)); void EVP_PKEY_meth_set_paramgen(EVP_PKEY_METHOD *pmeth, int (*paramgen_init)(EVP_PKEY_CTX *ctx), int (*paramgen)(EVP_PKEY_CTX *ctx, EVP_PKEY *pkey)); void EVP_PKEY_meth_set_keygen(EVP_PKEY_METHOD *pmeth, int (*keygen_init)(EVP_PKEY_CTX *ctx), int (*keygen)(EVP_PKEY_CTX *ctx, EVP_PKEY *pkey)); void EVP_PKEY_meth_set_sign(EVP_PKEY_METHOD *pmeth, int (*sign_init)(EVP_PKEY_CTX *ctx), int (*sign)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_verify(EVP_PKEY_METHOD *pmeth, int (*verify_init)(EVP_PKEY_CTX *ctx), int (*verify)(EVP_PKEY_CTX *ctx, const unsigned char *sig, size_t siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_verify_recover(EVP_PKEY_METHOD *pmeth, int (*verify_recover_init)(EVP_PKEY_CTX *ctx), int (*verify_recover)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_signctx(EVP_PKEY_METHOD *pmeth, int (*signctx_init)(EVP_PKEY_CTX *ctx, EVP_MD_CTX *mctx), int (*signctx)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, EVP_MD_CTX *mctx)); void EVP_PKEY_meth_set_verifyctx(EVP_PKEY_METHOD *pmeth, int (*verifyctx_init)(EVP_PKEY_CTX *ctx, EVP_MD_CTX *mctx), int (*verifyctx)(EVP_PKEY_CTX *ctx, const unsigned char *sig,int siglen, EVP_MD_CTX *mctx)); void EVP_PKEY_meth_set_encrypt(EVP_PKEY_METHOD *pmeth, int (*encrypt_init)(EVP_PKEY_CTX *ctx), int (*encryptfn)(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen)); void EVP_PKEY_meth_set_decrypt(EVP_PKEY_METHOD *pmeth, int (*decrypt_init)(EVP_PKEY_CTX *ctx), int (*decrypt)(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen)); void EVP_PKEY_meth_set_derive(EVP_PKEY_METHOD *pmeth, int (*derive_init)(EVP_PKEY_CTX *ctx), int (*derive)(EVP_PKEY_CTX *ctx, unsigned char *key, size_t *keylen)); void EVP_PKEY_meth_set_ctrl(EVP_PKEY_METHOD *pmeth, int (*ctrl)(EVP_PKEY_CTX *ctx, int type, int p1, void *p2), int (*ctrl_str)(EVP_PKEY_CTX *ctx, const char *type, const char *value)); void ERR_load_EVP_strings(void); #define EVP_F_AESNI_INIT_KEY 165 #define EVP_F_AESNI_XTS_CIPHER 176 #define EVP_F_AES_INIT_KEY 133 #define EVP_F_AES_XTS 172 #define EVP_F_AES_XTS_CIPHER 175 #define EVP_F_CAMELLIA_INIT_KEY 159 #define EVP_F_CMAC_INIT 173 #define EVP_F_D2I_PKEY 100 #define EVP_F_DO_SIGVER_INIT 161 #define EVP_F_DSAPKEY2PKCS8 134 #define EVP_F_DSA_PKEY2PKCS8 135 #define EVP_F_ECDSA_PKEY2PKCS8 129 #define EVP_F_ECKEY_PKEY2PKCS8 132 #define EVP_F_EVP_CIPHERINIT_EX 123 #define EVP_F_EVP_CIPHER_CTX_COPY 163 #define EVP_F_EVP_CIPHER_CTX_CTRL 124 #define EVP_F_EVP_CIPHER_CTX_SET_KEY_LENGTH 122 #define EVP_F_EVP_DECRYPTFINAL_EX 101 #define EVP_F_EVP_DIGESTINIT_EX 128 #define EVP_F_EVP_ENCRYPTFINAL_EX 127 #define EVP_F_EVP_MD_CTX_COPY_EX 110 #define EVP_F_EVP_MD_SIZE 162 #define EVP_F_EVP_OPENINIT 102 #define EVP_F_EVP_PBE_ALG_ADD 115 #define EVP_F_EVP_PBE_ALG_ADD_TYPE 160 #define EVP_F_EVP_PBE_CIPHERINIT 116 #define EVP_F_EVP_PKCS82PKEY 111 #define EVP_F_EVP_PKCS82PKEY_BROKEN 136 #define EVP_F_EVP_PKEY2PKCS8_BROKEN 113 #define EVP_F_EVP_PKEY_COPY_PARAMETERS 103 #define EVP_F_EVP_PKEY_CTX_CTRL 137 #define EVP_F_EVP_PKEY_CTX_CTRL_STR 150 #define EVP_F_EVP_PKEY_CTX_DUP 156 #define EVP_F_EVP_PKEY_DECRYPT 104 #define EVP_F_EVP_PKEY_DECRYPT_INIT 138 #define EVP_F_EVP_PKEY_DECRYPT_OLD 151 #define EVP_F_EVP_PKEY_DERIVE 153 #define EVP_F_EVP_PKEY_DERIVE_INIT 154 #define EVP_F_EVP_PKEY_DERIVE_SET_PEER 155 #define EVP_F_EVP_PKEY_ENCRYPT 105 #define EVP_F_EVP_PKEY_ENCRYPT_INIT 139 #define EVP_F_EVP_PKEY_ENCRYPT_OLD 152 #define EVP_F_EVP_PKEY_GET1_DH 119 #define EVP_F_EVP_PKEY_GET1_DSA 120 #define EVP_F_EVP_PKEY_GET1_ECDSA 130 #define EVP_F_EVP_PKEY_GET1_EC_KEY 131 #define EVP_F_EVP_PKEY_GET1_RSA 121 #define EVP_F_EVP_PKEY_KEYGEN 146 #define EVP_F_EVP_PKEY_KEYGEN_INIT 147 #define EVP_F_EVP_PKEY_NEW 106 #define EVP_F_EVP_PKEY_PARAMGEN 148 #define EVP_F_EVP_PKEY_PARAMGEN_INIT 149 #define EVP_F_EVP_PKEY_SIGN 140 #define EVP_F_EVP_PKEY_SIGN_INIT 141 #define EVP_F_EVP_PKEY_VERIFY 142 #define EVP_F_EVP_PKEY_VERIFY_INIT 143 #define EVP_F_EVP_PKEY_VERIFY_RECOVER 144 #define EVP_F_EVP_PKEY_VERIFY_RECOVER_INIT 145 #define EVP_F_EVP_RIJNDAEL 126 #define EVP_F_EVP_SIGNFINAL 107 #define EVP_F_EVP_VERIFYFINAL 108 #define EVP_F_FIPS_CIPHERINIT 166 #define EVP_F_FIPS_CIPHER_CTX_COPY 170 #define EVP_F_FIPS_CIPHER_CTX_CTRL 167 #define EVP_F_FIPS_CIPHER_CTX_SET_KEY_LENGTH 171 #define EVP_F_FIPS_DIGESTINIT 168 #define EVP_F_FIPS_MD_CTX_COPY 169 #define EVP_F_HMAC_INIT_EX 174 #define EVP_F_INT_CTX_NEW 157 #define EVP_F_PKCS5_PBE_KEYIVGEN 117 #define EVP_F_PKCS5_V2_PBE_KEYIVGEN 118 #define EVP_F_PKCS5_V2_PBKDF2_KEYIVGEN 164 #define EVP_F_PKCS8_SET_BROKEN 112 #define EVP_F_PKEY_SET_TYPE 158 #define EVP_F_RC2_MAGIC_TO_METH 109 #define EVP_F_RC5_CTRL 125 #define EVP_R_AES_IV_SETUP_FAILED 162 #define EVP_R_AES_KEY_SETUP_FAILED 143 #define EVP_R_ASN1_LIB 140 #define EVP_R_BAD_BLOCK_LENGTH 136 #define EVP_R_BAD_DECRYPT 100 #define EVP_R_BAD_KEY_LENGTH 137 #define EVP_R_BN_DECODE_ERROR 112 #define EVP_R_BN_PUBKEY_ERROR 113 #define EVP_R_BUFFER_TOO_SMALL 155 #define EVP_R_CAMELLIA_KEY_SETUP_FAILED 157 #define EVP_R_CIPHER_PARAMETER_ERROR 122 #define EVP_R_COMMAND_NOT_SUPPORTED 147 #define EVP_R_CTRL_NOT_IMPLEMENTED 132 #define EVP_R_CTRL_OPERATION_NOT_IMPLEMENTED 133 #define EVP_R_DATA_NOT_MULTIPLE_OF_BLOCK_LENGTH 138 #define EVP_R_DECODE_ERROR 114 #define EVP_R_DIFFERENT_KEY_TYPES 101 #define EVP_R_DIFFERENT_PARAMETERS 153 #define EVP_R_DISABLED_FOR_FIPS 163 #define EVP_R_ENCODE_ERROR 115 #define EVP_R_EVP_PBE_CIPHERINIT_ERROR 119 #define EVP_R_EXPECTING_AN_RSA_KEY 127 #define EVP_R_EXPECTING_A_DH_KEY 128 #define EVP_R_EXPECTING_A_DSA_KEY 129 #define EVP_R_EXPECTING_A_ECDSA_KEY 141 #define EVP_R_EXPECTING_A_EC_KEY 142 #define EVP_R_INITIALIZATION_ERROR 134 #define EVP_R_INPUT_NOT_INITIALIZED 111 #define EVP_R_INVALID_DIGEST 152 #define EVP_R_INVALID_KEY_LENGTH 130 #define EVP_R_INVALID_OPERATION 148 #define EVP_R_IV_TOO_LARGE 102 #define EVP_R_KEYGEN_FAILURE 120 #define EVP_R_MESSAGE_DIGEST_IS_NULL 159 #define EVP_R_METHOD_NOT_SUPPORTED 144 #define EVP_R_MISSING_PARAMETERS 103 #define EVP_R_NO_CIPHER_SET 131 #define EVP_R_NO_DEFAULT_DIGEST 158 #define EVP_R_NO_DIGEST_SET 139 #define EVP_R_NO_DSA_PARAMETERS 116 #define EVP_R_NO_KEY_SET 154 #define EVP_R_NO_OPERATION_SET 149 #define EVP_R_NO_SIGN_FUNCTION_CONFIGURED 104 #define EVP_R_NO_VERIFY_FUNCTION_CONFIGURED 105 #define EVP_R_OPERATION_NOT_SUPPORTED_FOR_THIS_KEYTYPE 150 #define EVP_R_OPERATON_NOT_INITIALIZED 151 #define EVP_R_PKCS8_UNKNOWN_BROKEN_TYPE 117 #define EVP_R_PRIVATE_KEY_DECODE_ERROR 145 #define EVP_R_PRIVATE_KEY_ENCODE_ERROR 146 #define EVP_R_PUBLIC_KEY_NOT_RSA 106 #define EVP_R_TOO_LARGE 164 #define EVP_R_UNKNOWN_CIPHER 160 #define EVP_R_UNKNOWN_DIGEST 161 #define EVP_R_UNKNOWN_PBE_ALGORITHM 121 #define EVP_R_UNSUPORTED_NUMBER_OF_ROUNDS 135 #define EVP_R_UNSUPPORTED_ALGORITHM 156 #define EVP_R_UNSUPPORTED_CIPHER 107 #define EVP_R_UNSUPPORTED_KEYLENGTH 123 #define EVP_R_UNSUPPORTED_KEY_DERIVATION_FUNCTION 124 #define EVP_R_UNSUPPORTED_KEY_SIZE 108 #define EVP_R_UNSUPPORTED_PRF 125 #define EVP_R_UNSUPPORTED_PRIVATE_KEY_ALGORITHM 118 #define EVP_R_UNSUPPORTED_SALT_TYPE 126 #define EVP_R_WRONG_FINAL_BLOCK_LENGTH 109 #define EVP_R_WRONG_PUBLIC_KEY_TYPE 110 # 74 "/usr/include/openssl/x509.h" 2 3 4 # 83 "/usr/include/openssl/x509.h" 3 4 # 1 "/usr/include/openssl/ec.h" 1 3 4 # 77 "/usr/include/openssl/ec.h" 3 4 #define HEADER_EC_H # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 80 "/usr/include/openssl/ec.h" 2 3 4 # 101 "/usr/include/openssl/ec.h" 3 4 #define OPENSSL_ECC_MAX_FIELD_BITS 661 typedef enum { POINT_CONVERSION_COMPRESSED = 2, POINT_CONVERSION_UNCOMPRESSED = 4, POINT_CONVERSION_HYBRID = 6 } point_conversion_form_t; typedef struct ec_method_st EC_METHOD; typedef struct ec_group_st # 129 "/usr/include/openssl/ec.h" 3 4 EC_GROUP; typedef struct ec_point_st EC_POINT; # 142 "/usr/include/openssl/ec.h" 3 4 const EC_METHOD *EC_GFp_simple_method(void); const EC_METHOD *EC_GFp_mont_method(void); const EC_METHOD *EC_GFp_nist_method(void); const EC_METHOD *EC_GFp_nistp224_method(void); const EC_METHOD *EC_GFp_nistp256_method(void); const EC_METHOD *EC_GFp_nistp521_method(void); # 179 "/usr/include/openssl/ec.h" 3 4 const EC_METHOD *EC_GF2m_simple_method(void); # 192 "/usr/include/openssl/ec.h" 3 4 EC_GROUP *EC_GROUP_new(const EC_METHOD *meth); void EC_GROUP_free(EC_GROUP *group); void EC_GROUP_clear_free(EC_GROUP *group); int EC_GROUP_copy(EC_GROUP *dst, const EC_GROUP *src); EC_GROUP *EC_GROUP_dup(const EC_GROUP *src); const EC_METHOD *EC_GROUP_method_of(const EC_GROUP *group); int EC_METHOD_get_field_type(const EC_METHOD *meth); # 238 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_set_generator(EC_GROUP *group, const EC_POINT *generator, const BIGNUM *order, const BIGNUM *cofactor); const EC_POINT *EC_GROUP_get0_generator(const EC_GROUP *group); int EC_GROUP_get_order(const EC_GROUP *group, BIGNUM *order, BN_CTX *ctx); int EC_GROUP_get_cofactor(const EC_GROUP *group, BIGNUM *cofactor, BN_CTX *ctx); void EC_GROUP_set_curve_name(EC_GROUP *group, int nid); int EC_GROUP_get_curve_name(const EC_GROUP *group); void EC_GROUP_set_asn1_flag(EC_GROUP *group, int flag); int EC_GROUP_get_asn1_flag(const EC_GROUP *group); void EC_GROUP_set_point_conversion_form(EC_GROUP *, point_conversion_form_t); point_conversion_form_t EC_GROUP_get_point_conversion_form(const EC_GROUP *); unsigned char *EC_GROUP_get0_seed(const EC_GROUP *); size_t EC_GROUP_get_seed_len(const EC_GROUP *); size_t EC_GROUP_set_seed(EC_GROUP *, const unsigned char *, size_t len); # 292 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_set_curve_GFp(EC_GROUP *group, const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); # 302 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_get_curve_GFp(const EC_GROUP *group, BIGNUM *p, BIGNUM *a, BIGNUM *b, BN_CTX *ctx); # 313 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_set_curve_GF2m(EC_GROUP *group, const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); # 323 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_get_curve_GF2m(const EC_GROUP *group, BIGNUM *p, BIGNUM *a, BIGNUM *b, BN_CTX *ctx); int EC_GROUP_get_degree(const EC_GROUP *group); int EC_GROUP_check(const EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_check_discriminant(const EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_cmp(const EC_GROUP *a, const EC_GROUP *b, BN_CTX *ctx); # 364 "/usr/include/openssl/ec.h" 3 4 EC_GROUP *EC_GROUP_new_curve_GFp(const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); # 374 "/usr/include/openssl/ec.h" 3 4 EC_GROUP *EC_GROUP_new_curve_GF2m(const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); EC_GROUP *EC_GROUP_new_by_curve_name(int nid); typedef struct { int nid; const char *comment; } EC_builtin_curve; size_t EC_get_builtin_curves(EC_builtin_curve *r, size_t nitems); # 408 "/usr/include/openssl/ec.h" 3 4 EC_POINT *EC_POINT_new(const EC_GROUP *group); void EC_POINT_free(EC_POINT *point); void EC_POINT_clear_free(EC_POINT *point); int EC_POINT_copy(EC_POINT *dst, const EC_POINT *src); EC_POINT *EC_POINT_dup(const EC_POINT *src, const EC_GROUP *group); const EC_METHOD *EC_POINT_method_of(const EC_POINT *point); int EC_POINT_set_to_infinity(const EC_GROUP *group, EC_POINT *point); # 457 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_set_Jprojective_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, const BIGNUM *y, const BIGNUM *z, BN_CTX *ctx); # 469 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_get_Jprojective_coordinates_GFp(const EC_GROUP *group, const EC_POINT *p, BIGNUM *x, BIGNUM *y, BIGNUM *z, BN_CTX *ctx); # 480 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_set_affine_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, const BIGNUM *y, BN_CTX *ctx); # 491 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_get_affine_coordinates_GFp(const EC_GROUP *group, const EC_POINT *p, BIGNUM *x, BIGNUM *y, BN_CTX *ctx); # 502 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_set_compressed_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, int y_bit, BN_CTX *ctx); # 513 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_set_affine_coordinates_GF2m(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, const BIGNUM *y, BN_CTX *ctx); # 524 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_get_affine_coordinates_GF2m(const EC_GROUP *group, const EC_POINT *p, BIGNUM *x, BIGNUM *y, BN_CTX *ctx); # 535 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_set_compressed_coordinates_GF2m(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, int y_bit, BN_CTX *ctx); # 548 "/usr/include/openssl/ec.h" 3 4 size_t EC_POINT_point2oct(const EC_GROUP *group, const EC_POINT *p, point_conversion_form_t form, unsigned char *buf, size_t len, BN_CTX *ctx); # 560 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_oct2point(const EC_GROUP *group, EC_POINT *p, const unsigned char *buf, size_t len, BN_CTX *ctx); BIGNUM *EC_POINT_point2bn(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, BIGNUM *, BN_CTX *); EC_POINT *EC_POINT_bn2point(const EC_GROUP *, const BIGNUM *, EC_POINT *, BN_CTX *); char *EC_POINT_point2hex(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, BN_CTX *); EC_POINT *EC_POINT_hex2point(const EC_GROUP *, const char *, EC_POINT *, BN_CTX *); # 586 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_add(const EC_GROUP *group, EC_POINT *r, const EC_POINT *a, const EC_POINT *b, BN_CTX *ctx); # 595 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_dbl(const EC_GROUP *group, EC_POINT *r, const EC_POINT *a, BN_CTX *ctx); int EC_POINT_invert(const EC_GROUP *group, EC_POINT *a, BN_CTX *ctx); int EC_POINT_is_at_infinity(const EC_GROUP *group, const EC_POINT *p); int EC_POINT_is_on_curve(const EC_GROUP *group, const EC_POINT *point, BN_CTX *ctx); # 627 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_cmp(const EC_GROUP *group, const EC_POINT *a, const EC_POINT *b, BN_CTX *ctx); int EC_POINT_make_affine(const EC_GROUP *, EC_POINT *, BN_CTX *); int EC_POINTs_make_affine(const EC_GROUP *, size_t num, EC_POINT *[], BN_CTX *); # 642 "/usr/include/openssl/ec.h" 3 4 int EC_POINTs_mul(const EC_GROUP *group, EC_POINT *r, const BIGNUM *n, size_t num, const EC_POINT *p[], const BIGNUM *m[], BN_CTX *ctx); # 653 "/usr/include/openssl/ec.h" 3 4 int EC_POINT_mul(const EC_GROUP *group, EC_POINT *r, const BIGNUM *n, const EC_POINT *q, const BIGNUM *m, BN_CTX *ctx); int EC_GROUP_precompute_mult(EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_have_precompute_mult(const EC_GROUP *group); # 675 "/usr/include/openssl/ec.h" 3 4 int EC_GROUP_get_basis_type(const EC_GROUP *); int EC_GROUP_get_trinomial_basis(const EC_GROUP *, unsigned int *k); int EC_GROUP_get_pentanomial_basis(const EC_GROUP *, unsigned int *k1, unsigned int *k2, unsigned int *k3); #define OPENSSL_EC_NAMED_CURVE 0x001 typedef struct ecpk_parameters_st ECPKPARAMETERS; EC_GROUP *d2i_ECPKParameters(EC_GROUP **, const unsigned char **in, long len); int i2d_ECPKParameters(const EC_GROUP *, unsigned char **out); #define d2i_ECPKParameters_bio(bp,x) ASN1_d2i_bio_of(EC_GROUP,NULL,d2i_ECPKParameters,bp,x) #define i2d_ECPKParameters_bio(bp,x) ASN1_i2d_bio_of_const(EC_GROUP,i2d_ECPKParameters,bp,x) #define d2i_ECPKParameters_fp(fp,x) (EC_GROUP *)ASN1_d2i_fp(NULL, (char *(*)())d2i_ECPKParameters,(fp),(unsigned char **)(x)) #define i2d_ECPKParameters_fp(fp,x) ASN1_i2d_fp(i2d_ECPKParameters,(fp), (unsigned char *)(x)) int ECPKParameters_print(BIO *bp, const EC_GROUP *x, int off); int ECPKParameters_print_fp(FILE *fp, const EC_GROUP *x, int off); typedef struct ec_key_st EC_KEY; #define EC_PKEY_NO_PARAMETERS 0x001 #define EC_PKEY_NO_PUBKEY 0x002 #define EC_FLAG_NON_FIPS_ALLOW 0x1 #define EC_FLAG_FIPS_CHECKED 0x2 EC_KEY *EC_KEY_new(void); int EC_KEY_get_flags(const EC_KEY *key); void EC_KEY_set_flags(EC_KEY *key, int flags); void EC_KEY_clear_flags(EC_KEY *key, int flags); EC_KEY *EC_KEY_new_by_curve_name(int nid); void EC_KEY_free(EC_KEY *key); EC_KEY *EC_KEY_copy(EC_KEY *dst, const EC_KEY *src); EC_KEY *EC_KEY_dup(const EC_KEY *src); int EC_KEY_up_ref(EC_KEY *key); const EC_GROUP *EC_KEY_get0_group(const EC_KEY *key); int EC_KEY_set_group(EC_KEY *key, const EC_GROUP *group); const BIGNUM *EC_KEY_get0_private_key(const EC_KEY *key); int EC_KEY_set_private_key(EC_KEY *key, const BIGNUM *prv); const EC_POINT *EC_KEY_get0_public_key(const EC_KEY *key); int EC_KEY_set_public_key(EC_KEY *key, const EC_POINT *pub); unsigned EC_KEY_get_enc_flags(const EC_KEY *key); void EC_KEY_set_enc_flags(EC_KEY *, unsigned int); point_conversion_form_t EC_KEY_get_conv_form(const EC_KEY *); void EC_KEY_set_conv_form(EC_KEY *, point_conversion_form_t); void *EC_KEY_get_key_method_data(EC_KEY *, void *(*dup_func)(void *), void (*free_func)(void *), void (*clear_free_func)(void *)); void EC_KEY_insert_key_method_data(EC_KEY *, void *data, void *(*dup_func)(void *), void (*free_func)(void *), void (*clear_free_func)(void *)); void EC_KEY_set_asn1_flag(EC_KEY *, int); int EC_KEY_precompute_mult(EC_KEY *key, BN_CTX *ctx); int EC_KEY_generate_key(EC_KEY *key); int EC_KEY_check_key(const EC_KEY *key); # 841 "/usr/include/openssl/ec.h" 3 4 int EC_KEY_set_public_key_affine_coordinates(EC_KEY *key, BIGNUM *x, BIGNUM *y); # 854 "/usr/include/openssl/ec.h" 3 4 EC_KEY *d2i_ECPrivateKey(EC_KEY **key, const unsigned char **in, long len); int i2d_ECPrivateKey(EC_KEY *key, unsigned char **out); # 876 "/usr/include/openssl/ec.h" 3 4 EC_KEY *d2i_ECParameters(EC_KEY **key, const unsigned char **in, long len); int i2d_ECParameters(EC_KEY *key, unsigned char **out); # 899 "/usr/include/openssl/ec.h" 3 4 EC_KEY *o2i_ECPublicKey(EC_KEY **key, const unsigned char **in, long len); int i2o_ECPublicKey(EC_KEY *key, unsigned char **out); int ECParameters_print(BIO *bp, const EC_KEY *key); int EC_KEY_print(BIO *bp, const EC_KEY *key, int off); # 932 "/usr/include/openssl/ec.h" 3 4 int ECParameters_print_fp(FILE *fp, const EC_KEY *key); int EC_KEY_print_fp(FILE *fp, const EC_KEY *key, int off); #define ECParameters_dup(x) ASN1_dup_of(EC_KEY,i2d_ECParameters,d2i_ECParameters,x) # 954 "/usr/include/openssl/ec.h" 3 4 #define EVP_PKEY_CTX_set_ec_paramgen_curve_nid(ctx,nid) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_EC, EVP_PKEY_OP_PARAMGEN, EVP_PKEY_CTRL_EC_PARAMGEN_CURVE_NID, nid, NULL) #define EVP_PKEY_CTRL_EC_PARAMGEN_CURVE_NID (EVP_PKEY_ALG_CTRL + 1) void ERR_load_EC_strings(void); #define EC_F_BN_TO_FELEM 224 #define EC_F_COMPUTE_WNAF 143 #define EC_F_D2I_ECPARAMETERS 144 #define EC_F_D2I_ECPKPARAMETERS 145 #define EC_F_D2I_ECPRIVATEKEY 146 #define EC_F_DO_EC_KEY_PRINT 221 #define EC_F_ECKEY_PARAM2TYPE 223 #define EC_F_ECKEY_PARAM_DECODE 212 #define EC_F_ECKEY_PRIV_DECODE 213 #define EC_F_ECKEY_PRIV_ENCODE 214 #define EC_F_ECKEY_PUB_DECODE 215 #define EC_F_ECKEY_PUB_ENCODE 216 #define EC_F_ECKEY_TYPE2PARAM 220 #define EC_F_ECPARAMETERS_PRINT 147 #define EC_F_ECPARAMETERS_PRINT_FP 148 #define EC_F_ECPKPARAMETERS_PRINT 149 #define EC_F_ECPKPARAMETERS_PRINT_FP 150 #define EC_F_ECP_NIST_MOD_192 203 #define EC_F_ECP_NIST_MOD_224 204 #define EC_F_ECP_NIST_MOD_256 205 #define EC_F_ECP_NIST_MOD_521 206 #define EC_F_EC_ASN1_GROUP2CURVE 153 #define EC_F_EC_ASN1_GROUP2FIELDID 154 #define EC_F_EC_ASN1_GROUP2PARAMETERS 155 #define EC_F_EC_ASN1_GROUP2PKPARAMETERS 156 #define EC_F_EC_ASN1_PARAMETERS2GROUP 157 #define EC_F_EC_ASN1_PKPARAMETERS2GROUP 158 #define EC_F_EC_EX_DATA_SET_DATA 211 #define EC_F_EC_GF2M_MONTGOMERY_POINT_MULTIPLY 208 #define EC_F_EC_GF2M_SIMPLE_GROUP_CHECK_DISCRIMINANT 159 #define EC_F_EC_GF2M_SIMPLE_GROUP_SET_CURVE 195 #define EC_F_EC_GF2M_SIMPLE_OCT2POINT 160 #define EC_F_EC_GF2M_SIMPLE_POINT2OCT 161 #define EC_F_EC_GF2M_SIMPLE_POINT_GET_AFFINE_COORDINATES 162 #define EC_F_EC_GF2M_SIMPLE_POINT_SET_AFFINE_COORDINATES 163 #define EC_F_EC_GF2M_SIMPLE_SET_COMPRESSED_COORDINATES 164 #define EC_F_EC_GFP_MONT_FIELD_DECODE 133 #define EC_F_EC_GFP_MONT_FIELD_ENCODE 134 #define EC_F_EC_GFP_MONT_FIELD_MUL 131 #define EC_F_EC_GFP_MONT_FIELD_SET_TO_ONE 209 #define EC_F_EC_GFP_MONT_FIELD_SQR 132 #define EC_F_EC_GFP_MONT_GROUP_SET_CURVE 189 #define EC_F_EC_GFP_MONT_GROUP_SET_CURVE_GFP 135 #define EC_F_EC_GFP_NISTP224_GROUP_SET_CURVE 225 #define EC_F_EC_GFP_NISTP224_POINTS_MUL 228 #define EC_F_EC_GFP_NISTP224_POINT_GET_AFFINE_COORDINATES 226 #define EC_F_EC_GFP_NISTP256_GROUP_SET_CURVE 230 #define EC_F_EC_GFP_NISTP256_POINTS_MUL 231 #define EC_F_EC_GFP_NISTP256_POINT_GET_AFFINE_COORDINATES 232 #define EC_F_EC_GFP_NISTP521_GROUP_SET_CURVE 233 #define EC_F_EC_GFP_NISTP521_POINTS_MUL 234 #define EC_F_EC_GFP_NISTP521_POINT_GET_AFFINE_COORDINATES 235 #define EC_F_EC_GFP_NIST_FIELD_MUL 200 #define EC_F_EC_GFP_NIST_FIELD_SQR 201 #define EC_F_EC_GFP_NIST_GROUP_SET_CURVE 202 #define EC_F_EC_GFP_SIMPLE_GROUP_CHECK_DISCRIMINANT 165 #define EC_F_EC_GFP_SIMPLE_GROUP_SET_CURVE 166 #define EC_F_EC_GFP_SIMPLE_GROUP_SET_CURVE_GFP 100 #define EC_F_EC_GFP_SIMPLE_GROUP_SET_GENERATOR 101 #define EC_F_EC_GFP_SIMPLE_MAKE_AFFINE 102 #define EC_F_EC_GFP_SIMPLE_OCT2POINT 103 #define EC_F_EC_GFP_SIMPLE_POINT2OCT 104 #define EC_F_EC_GFP_SIMPLE_POINTS_MAKE_AFFINE 137 #define EC_F_EC_GFP_SIMPLE_POINT_GET_AFFINE_COORDINATES 167 #define EC_F_EC_GFP_SIMPLE_POINT_GET_AFFINE_COORDINATES_GFP 105 #define EC_F_EC_GFP_SIMPLE_POINT_SET_AFFINE_COORDINATES 168 #define EC_F_EC_GFP_SIMPLE_POINT_SET_AFFINE_COORDINATES_GFP 128 #define EC_F_EC_GFP_SIMPLE_SET_COMPRESSED_COORDINATES 169 #define EC_F_EC_GFP_SIMPLE_SET_COMPRESSED_COORDINATES_GFP 129 #define EC_F_EC_GROUP_CHECK 170 #define EC_F_EC_GROUP_CHECK_DISCRIMINANT 171 #define EC_F_EC_GROUP_COPY 106 #define EC_F_EC_GROUP_GET0_GENERATOR 139 #define EC_F_EC_GROUP_GET_COFACTOR 140 #define EC_F_EC_GROUP_GET_CURVE_GF2M 172 #define EC_F_EC_GROUP_GET_CURVE_GFP 130 #define EC_F_EC_GROUP_GET_DEGREE 173 #define EC_F_EC_GROUP_GET_ORDER 141 #define EC_F_EC_GROUP_GET_PENTANOMIAL_BASIS 193 #define EC_F_EC_GROUP_GET_TRINOMIAL_BASIS 194 #define EC_F_EC_GROUP_NEW 108 #define EC_F_EC_GROUP_NEW_BY_CURVE_NAME 174 #define EC_F_EC_GROUP_NEW_FROM_DATA 175 #define EC_F_EC_GROUP_PRECOMPUTE_MULT 142 #define EC_F_EC_GROUP_SET_CURVE_GF2M 176 #define EC_F_EC_GROUP_SET_CURVE_GFP 109 #define EC_F_EC_GROUP_SET_EXTRA_DATA 110 #define EC_F_EC_GROUP_SET_GENERATOR 111 #define EC_F_EC_KEY_CHECK_KEY 177 #define EC_F_EC_KEY_COPY 178 #define EC_F_EC_KEY_GENERATE_KEY 179 #define EC_F_EC_KEY_NEW 182 #define EC_F_EC_KEY_PRINT 180 #define EC_F_EC_KEY_PRINT_FP 181 #define EC_F_EC_KEY_SET_PUBLIC_KEY_AFFINE_COORDINATES 229 #define EC_F_EC_POINTS_MAKE_AFFINE 136 #define EC_F_EC_POINT_ADD 112 #define EC_F_EC_POINT_CMP 113 #define EC_F_EC_POINT_COPY 114 #define EC_F_EC_POINT_DBL 115 #define EC_F_EC_POINT_GET_AFFINE_COORDINATES_GF2M 183 #define EC_F_EC_POINT_GET_AFFINE_COORDINATES_GFP 116 #define EC_F_EC_POINT_GET_JPROJECTIVE_COORDINATES_GFP 117 #define EC_F_EC_POINT_INVERT 210 #define EC_F_EC_POINT_IS_AT_INFINITY 118 #define EC_F_EC_POINT_IS_ON_CURVE 119 #define EC_F_EC_POINT_MAKE_AFFINE 120 #define EC_F_EC_POINT_MUL 184 #define EC_F_EC_POINT_NEW 121 #define EC_F_EC_POINT_OCT2POINT 122 #define EC_F_EC_POINT_POINT2OCT 123 #define EC_F_EC_POINT_SET_AFFINE_COORDINATES_GF2M 185 #define EC_F_EC_POINT_SET_AFFINE_COORDINATES_GFP 124 #define EC_F_EC_POINT_SET_COMPRESSED_COORDINATES_GF2M 186 #define EC_F_EC_POINT_SET_COMPRESSED_COORDINATES_GFP 125 #define EC_F_EC_POINT_SET_JPROJECTIVE_COORDINATES_GFP 126 #define EC_F_EC_POINT_SET_TO_INFINITY 127 #define EC_F_EC_PRE_COMP_DUP 207 #define EC_F_EC_PRE_COMP_NEW 196 #define EC_F_EC_WNAF_MUL 187 #define EC_F_EC_WNAF_PRECOMPUTE_MULT 188 #define EC_F_I2D_ECPARAMETERS 190 #define EC_F_I2D_ECPKPARAMETERS 191 #define EC_F_I2D_ECPRIVATEKEY 192 #define EC_F_I2O_ECPUBLICKEY 151 #define EC_F_NISTP224_PRE_COMP_NEW 227 #define EC_F_NISTP256_PRE_COMP_NEW 236 #define EC_F_NISTP521_PRE_COMP_NEW 237 #define EC_F_O2I_ECPUBLICKEY 152 #define EC_F_OLD_EC_PRIV_DECODE 222 #define EC_F_PKEY_EC_CTRL 197 #define EC_F_PKEY_EC_CTRL_STR 198 #define EC_F_PKEY_EC_DERIVE 217 #define EC_F_PKEY_EC_KEYGEN 199 #define EC_F_PKEY_EC_PARAMGEN 219 #define EC_F_PKEY_EC_SIGN 218 #define EC_R_ASN1_ERROR 115 #define EC_R_ASN1_UNKNOWN_FIELD 116 #define EC_R_BIGNUM_OUT_OF_RANGE 144 #define EC_R_BUFFER_TOO_SMALL 100 #define EC_R_COORDINATES_OUT_OF_RANGE 146 #define EC_R_D2I_ECPKPARAMETERS_FAILURE 117 #define EC_R_DECODE_ERROR 142 #define EC_R_DISCRIMINANT_IS_ZERO 118 #define EC_R_EC_GROUP_NEW_BY_NAME_FAILURE 119 #define EC_R_FIELD_TOO_LARGE 143 #define EC_R_GF2M_NOT_SUPPORTED 147 #define EC_R_GROUP2PKPARAMETERS_FAILURE 120 #define EC_R_I2D_ECPKPARAMETERS_FAILURE 121 #define EC_R_INCOMPATIBLE_OBJECTS 101 #define EC_R_INVALID_ARGUMENT 112 #define EC_R_INVALID_COMPRESSED_POINT 110 #define EC_R_INVALID_COMPRESSION_BIT 109 #define EC_R_INVALID_CURVE 141 #define EC_R_INVALID_DIGEST_TYPE 138 #define EC_R_INVALID_ENCODING 102 #define EC_R_INVALID_FIELD 103 #define EC_R_INVALID_FORM 104 #define EC_R_INVALID_GROUP_ORDER 122 #define EC_R_INVALID_PENTANOMIAL_BASIS 132 #define EC_R_INVALID_PRIVATE_KEY 123 #define EC_R_INVALID_TRINOMIAL_BASIS 137 #define EC_R_KEYS_NOT_SET 140 #define EC_R_MISSING_PARAMETERS 124 #define EC_R_MISSING_PRIVATE_KEY 125 #define EC_R_NOT_A_NIST_PRIME 135 #define EC_R_NOT_A_SUPPORTED_NIST_PRIME 136 #define EC_R_NOT_IMPLEMENTED 126 #define EC_R_NOT_INITIALIZED 111 #define EC_R_NO_FIELD_MOD 133 #define EC_R_NO_PARAMETERS_SET 139 #define EC_R_PASSED_NULL_PARAMETER 134 #define EC_R_PKPARAMETERS2GROUP_FAILURE 127 #define EC_R_POINT_AT_INFINITY 106 #define EC_R_POINT_IS_NOT_ON_CURVE 107 #define EC_R_SLOT_FULL 108 #define EC_R_UNDEFINED_GENERATOR 113 #define EC_R_UNDEFINED_ORDER 128 #define EC_R_UNKNOWN_GROUP 129 #define EC_R_UNKNOWN_ORDER 114 #define EC_R_UNSUPPORTED_FIELD 131 #define EC_R_WRONG_CURVE_PARAMETERS 145 #define EC_R_WRONG_ORDER 130 # 84 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/ecdsa.h" 1 3 4 # 60 "/usr/include/openssl/ecdsa.h" 3 4 #define HEADER_ECDSA_H # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 63 "/usr/include/openssl/ecdsa.h" 2 3 4 # 78 "/usr/include/openssl/ecdsa.h" 3 4 typedef struct ECDSA_SIG_st { BIGNUM *r; BIGNUM *s; } ECDSA_SIG; ECDSA_SIG *ECDSA_SIG_new(void); void ECDSA_SIG_free(ECDSA_SIG *sig); int i2d_ECDSA_SIG(const ECDSA_SIG *sig, unsigned char **pp); # 109 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *d2i_ECDSA_SIG(ECDSA_SIG **sig, const unsigned char **pp, long len); # 118 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *ECDSA_do_sign(const unsigned char *dgst,int dgst_len,EC_KEY *eckey); # 130 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *ECDSA_do_sign_ex(const unsigned char *dgst, int dgstlen, const BIGNUM *kinv, const BIGNUM *rp, EC_KEY *eckey); # 142 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_do_verify(const unsigned char *dgst, int dgst_len, const ECDSA_SIG *sig, EC_KEY* eckey); const ECDSA_METHOD *ECDSA_OpenSSL(void); void ECDSA_set_default_method(const ECDSA_METHOD *meth); const ECDSA_METHOD *ECDSA_get_default_method(void); int ECDSA_set_method(EC_KEY *eckey, const ECDSA_METHOD *meth); int ECDSA_size(const EC_KEY *eckey); # 177 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign_setup(EC_KEY *eckey, BN_CTX *ctx, BIGNUM **kinv, BIGNUM **rp); # 190 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign(int type, const unsigned char *dgst, int dgstlen, unsigned char *sig, unsigned int *siglen, EC_KEY *eckey); # 207 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign_ex(int type, const unsigned char *dgst, int dgstlen, unsigned char *sig, unsigned int *siglen, const BIGNUM *kinv, const BIGNUM *rp, EC_KEY *eckey); # 222 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_verify(int type, const unsigned char *dgst, int dgstlen, const unsigned char *sig, int siglen, EC_KEY *eckey); int ECDSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int ECDSA_set_ex_data(EC_KEY *d, int idx, void *arg); void *ECDSA_get_ex_data(EC_KEY *d, int idx); void ERR_load_ECDSA_strings(void); #define ECDSA_F_ECDSA_CHECK 104 #define ECDSA_F_ECDSA_DATA_NEW_METHOD 100 #define ECDSA_F_ECDSA_DO_SIGN 101 #define ECDSA_F_ECDSA_DO_VERIFY 102 #define ECDSA_F_ECDSA_SIGN_SETUP 103 #define ECDSA_R_BAD_SIGNATURE 100 #define ECDSA_R_DATA_TOO_LARGE_FOR_KEY_SIZE 101 #define ECDSA_R_ERR_EC_LIB 102 #define ECDSA_R_MISSING_PARAMETERS 103 #define ECDSA_R_NEED_NEW_SETUP_VALUES 106 #define ECDSA_R_NON_FIPS_METHOD 107 #define ECDSA_R_RANDOM_NUMBER_GENERATION_FAILED 104 #define ECDSA_R_SIGNATURE_MALLOC_FAILED 105 # 88 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/ecdh.h" 1 3 4 # 70 "/usr/include/openssl/ecdh.h" 3 4 #define HEADER_ECDH_H # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 73 "/usr/include/openssl/ecdh.h" 2 3 4 # 88 "/usr/include/openssl/ecdh.h" 3 4 const ECDH_METHOD *ECDH_OpenSSL(void); void ECDH_set_default_method(const ECDH_METHOD *); const ECDH_METHOD *ECDH_get_default_method(void); int ECDH_set_method(EC_KEY *, const ECDH_METHOD *); int ECDH_compute_key(void *out, size_t outlen, const EC_POINT *pub_key, EC_KEY *ecdh, void *(*KDF)(const void *in, size_t inlen, void *out, size_t *outlen)); int ECDH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int ECDH_set_ex_data(EC_KEY *d, int idx, void *arg); void *ECDH_get_ex_data(EC_KEY *d, int idx); void ERR_load_ECDH_strings(void); #define ECDH_F_ECDH_CHECK 102 #define ECDH_F_ECDH_COMPUTE_KEY 100 #define ECDH_F_ECDH_DATA_NEW_METHOD 101 #define ECDH_R_KDF_FAILED 102 #define ECDH_R_NON_FIPS_METHOD 103 #define ECDH_R_NO_PRIVATE_VALUE 100 #define ECDH_R_POINT_ARITHMETIC_FAILURE 101 # 92 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/rsa.h" 1 3 4 # 60 "/usr/include/openssl/rsa.h" 3 4 #define HEADER_RSA_H # 85 "/usr/include/openssl/rsa.h" 3 4 struct rsa_meth_st { const char *name; int (*rsa_pub_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_pub_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_priv_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_priv_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_mod_exp)(BIGNUM *r0,const BIGNUM *I,RSA *rsa,BN_CTX *ctx); int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(RSA *rsa); int (*finish)(RSA *rsa); int flags; char *app_data; int (*rsa_sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, const RSA *rsa); int (*rsa_verify)(int dtype, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, const RSA *rsa); int (*rsa_keygen)(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb); }; struct rsa_st { int pad; long version; const RSA_METHOD *meth; ENGINE *engine; BIGNUM *n; BIGNUM *e; BIGNUM *d; BIGNUM *p; BIGNUM *q; BIGNUM *dmp1; BIGNUM *dmq1; BIGNUM *iqmp; CRYPTO_EX_DATA ex_data; int references; int flags; BN_MONT_CTX *_method_mod_n; BN_MONT_CTX *_method_mod_p; BN_MONT_CTX *_method_mod_q; char *bignum_data; BN_BLINDING *blinding; BN_BLINDING *mt_blinding; }; #define OPENSSL_RSA_MAX_MODULUS_BITS 16384 #define OPENSSL_RSA_SMALL_MODULUS_BITS 3072 #define OPENSSL_RSA_MAX_PUBEXP_BITS 64 #define RSA_3 0x3L #define RSA_F4 0x10001L #define RSA_METHOD_FLAG_NO_CHECK 0x0001 #define RSA_FLAG_CACHE_PUBLIC 0x0002 #define RSA_FLAG_CACHE_PRIVATE 0x0004 #define RSA_FLAG_BLINDING 0x0008 #define RSA_FLAG_THREAD_SAFE 0x0010 #define RSA_FLAG_EXT_PKEY 0x0020 #define RSA_FLAG_SIGN_VER 0x0040 #define RSA_FLAG_NO_BLINDING 0x0080 #define RSA_FLAG_NO_CONSTTIME 0x0100 # 210 "/usr/include/openssl/rsa.h" 3 4 #define RSA_FLAG_NO_EXP_CONSTTIME RSA_FLAG_NO_CONSTTIME # 221 "/usr/include/openssl/rsa.h" 3 4 #define EVP_PKEY_CTX_set_rsa_padding(ctx,pad) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_RSA, -1, EVP_PKEY_CTRL_RSA_PADDING, pad, NULL) #define EVP_PKEY_CTX_get_rsa_padding(ctx,ppad) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_RSA, -1, EVP_PKEY_CTRL_GET_RSA_PADDING, 0, ppad) #define EVP_PKEY_CTX_set_rsa_pss_saltlen(ctx,len) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_RSA, (EVP_PKEY_OP_SIGN|EVP_PKEY_OP_VERIFY), EVP_PKEY_CTRL_RSA_PSS_SALTLEN, len, NULL) #define EVP_PKEY_CTX_get_rsa_pss_saltlen(ctx,plen) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_RSA, (EVP_PKEY_OP_SIGN|EVP_PKEY_OP_VERIFY), EVP_PKEY_CTRL_GET_RSA_PSS_SALTLEN, 0, plen) #define EVP_PKEY_CTX_set_rsa_keygen_bits(ctx,bits) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_RSA, EVP_PKEY_OP_KEYGEN, EVP_PKEY_CTRL_RSA_KEYGEN_BITS, bits, NULL) #define EVP_PKEY_CTX_set_rsa_keygen_pubexp(ctx,pubexp) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_RSA, EVP_PKEY_OP_KEYGEN, EVP_PKEY_CTRL_RSA_KEYGEN_PUBEXP, 0, pubexp) #define EVP_PKEY_CTX_set_rsa_mgf1_md(ctx,md) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_RSA, EVP_PKEY_OP_TYPE_SIG, EVP_PKEY_CTRL_RSA_MGF1_MD, 0, (void *)md) #define EVP_PKEY_CTX_get_rsa_mgf1_md(ctx,pmd) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_RSA, EVP_PKEY_OP_TYPE_SIG, EVP_PKEY_CTRL_GET_RSA_MGF1_MD, 0, (void *)pmd) #define EVP_PKEY_CTRL_RSA_PADDING (EVP_PKEY_ALG_CTRL + 1) #define EVP_PKEY_CTRL_RSA_PSS_SALTLEN (EVP_PKEY_ALG_CTRL + 2) #define EVP_PKEY_CTRL_RSA_KEYGEN_BITS (EVP_PKEY_ALG_CTRL + 3) #define EVP_PKEY_CTRL_RSA_KEYGEN_PUBEXP (EVP_PKEY_ALG_CTRL + 4) #define EVP_PKEY_CTRL_RSA_MGF1_MD (EVP_PKEY_ALG_CTRL + 5) #define EVP_PKEY_CTRL_GET_RSA_PADDING (EVP_PKEY_ALG_CTRL + 6) #define EVP_PKEY_CTRL_GET_RSA_PSS_SALTLEN (EVP_PKEY_ALG_CTRL + 7) #define EVP_PKEY_CTRL_GET_RSA_MGF1_MD (EVP_PKEY_ALG_CTRL + 8) #define RSA_PKCS1_PADDING 1 #define RSA_SSLV23_PADDING 2 #define RSA_NO_PADDING 3 #define RSA_PKCS1_OAEP_PADDING 4 #define RSA_X931_PADDING 5 #define RSA_PKCS1_PSS_PADDING 6 #define RSA_PKCS1_PADDING_SIZE 11 #define RSA_set_app_data(s,arg) RSA_set_ex_data(s,0,arg) #define RSA_get_app_data(s) RSA_get_ex_data(s,0) RSA * RSA_new(void); RSA * RSA_new_method(ENGINE *engine); int RSA_size(const RSA *); RSA * RSA_generate_key(int bits, unsigned long e,void (*callback)(int,int,void *),void *cb_arg); int RSA_generate_key_ex(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb); int RSA_check_key(const RSA *); int RSA_public_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_private_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_public_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_private_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); void RSA_free (RSA *r); int RSA_up_ref(RSA *r); int RSA_flags(const RSA *r); void RSA_set_default_method(const RSA_METHOD *meth); const RSA_METHOD *RSA_get_default_method(void); const RSA_METHOD *RSA_get_method(const RSA *rsa); int RSA_set_method(RSA *rsa, const RSA_METHOD *meth); int RSA_memory_lock(RSA *r); const RSA_METHOD *RSA_PKCS1_SSLeay(void); const RSA_METHOD *RSA_null_method(void); RSA *d2i_RSAPublicKey(RSA **a, const unsigned char **in, long len); int i2d_RSAPublicKey(const RSA *a, unsigned char **out); extern const ASN1_ITEM RSAPublicKey_it; RSA *d2i_RSAPrivateKey(RSA **a, const unsigned char **in, long len); int i2d_RSAPrivateKey(const RSA *a, unsigned char **out); extern const ASN1_ITEM RSAPrivateKey_it; typedef struct rsa_pss_params_st { X509_ALGOR *hashAlgorithm; X509_ALGOR *maskGenAlgorithm; ASN1_INTEGER *saltLength; ASN1_INTEGER *trailerField; } RSA_PSS_PARAMS; RSA_PSS_PARAMS *RSA_PSS_PARAMS_new(void); void RSA_PSS_PARAMS_free(RSA_PSS_PARAMS *a); RSA_PSS_PARAMS *d2i_RSA_PSS_PARAMS(RSA_PSS_PARAMS **a, const unsigned char **in, long len); int i2d_RSA_PSS_PARAMS(RSA_PSS_PARAMS *a, unsigned char **out); extern const ASN1_ITEM RSA_PSS_PARAMS_it; int RSA_print_fp(FILE *fp, const RSA *r,int offset); int RSA_print(BIO *bp, const RSA *r,int offset); int i2d_RSA_NET(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey); RSA *d2i_RSA_NET(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey); int i2d_Netscape_RSA(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify)); RSA *d2i_Netscape_RSA(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify)); int RSA_sign(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa); int RSA_verify(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, RSA *rsa); int RSA_sign_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa); int RSA_verify_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigbuf, unsigned int siglen, RSA *rsa); int RSA_blinding_on(RSA *rsa, BN_CTX *ctx); void RSA_blinding_off(RSA *rsa); BN_BLINDING *RSA_setup_blinding(RSA *rsa, BN_CTX *ctx); int RSA_padding_add_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int PKCS1_MGF1(unsigned char *mask, long len, const unsigned char *seed, long seedlen, const EVP_MD *dgst); int RSA_padding_add_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl, const unsigned char *p,int pl); int RSA_padding_check_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len, const unsigned char *p,int pl); int RSA_padding_add_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_none(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_none(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_X931(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_X931(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_X931_hash_id(int nid); int RSA_verify_PKCS1_PSS(RSA *rsa, const unsigned char *mHash, const EVP_MD *Hash, const unsigned char *EM, int sLen); int RSA_padding_add_PKCS1_PSS(RSA *rsa, unsigned char *EM, const unsigned char *mHash, const EVP_MD *Hash, int sLen); int RSA_verify_PKCS1_PSS_mgf1(RSA *rsa, const unsigned char *mHash, const EVP_MD *Hash, const EVP_MD *mgf1Hash, const unsigned char *EM, int sLen); int RSA_padding_add_PKCS1_PSS_mgf1(RSA *rsa, unsigned char *EM, const unsigned char *mHash, const EVP_MD *Hash, const EVP_MD *mgf1Hash, int sLen); int RSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int RSA_set_ex_data(RSA *r,int idx,void *arg); void *RSA_get_ex_data(const RSA *r, int idx); RSA *RSAPublicKey_dup(RSA *rsa); RSA *RSAPrivateKey_dup(RSA *rsa); #define RSA_FLAG_FIPS_METHOD 0x0400 #define RSA_FLAG_NON_FIPS_ALLOW 0x0400 #define RSA_FLAG_CHECKED 0x0800 void ERR_load_RSA_strings(void); #define RSA_F_CHECK_PADDING_MD 140 #define RSA_F_DO_RSA_PRINT 146 #define RSA_F_INT_RSA_VERIFY 145 #define RSA_F_MEMORY_LOCK 100 #define RSA_F_OLD_RSA_PRIV_DECODE 147 #define RSA_F_PKEY_RSA_CTRL 143 #define RSA_F_PKEY_RSA_CTRL_STR 144 #define RSA_F_PKEY_RSA_SIGN 142 #define RSA_F_PKEY_RSA_VERIFY 154 #define RSA_F_PKEY_RSA_VERIFYRECOVER 141 #define RSA_F_RSA_BUILTIN_KEYGEN 129 #define RSA_F_RSA_CHECK_KEY 123 #define RSA_F_RSA_EAY_PRIVATE_DECRYPT 101 #define RSA_F_RSA_EAY_PRIVATE_ENCRYPT 102 #define RSA_F_RSA_EAY_PUBLIC_DECRYPT 103 #define RSA_F_RSA_EAY_PUBLIC_ENCRYPT 104 #define RSA_F_RSA_GENERATE_KEY 105 #define RSA_F_RSA_GENERATE_KEY_EX 155 #define RSA_F_RSA_ITEM_VERIFY 156 #define RSA_F_RSA_MEMORY_LOCK 130 #define RSA_F_RSA_NEW_METHOD 106 #define RSA_F_RSA_NULL 124 #define RSA_F_RSA_NULL_MOD_EXP 131 #define RSA_F_RSA_NULL_PRIVATE_DECRYPT 132 #define RSA_F_RSA_NULL_PRIVATE_ENCRYPT 133 #define RSA_F_RSA_NULL_PUBLIC_DECRYPT 134 #define RSA_F_RSA_NULL_PUBLIC_ENCRYPT 135 #define RSA_F_RSA_PADDING_ADD_NONE 107 #define RSA_F_RSA_PADDING_ADD_PKCS1_OAEP 121 #define RSA_F_RSA_PADDING_ADD_PKCS1_PSS 125 #define RSA_F_RSA_PADDING_ADD_PKCS1_PSS_MGF1 148 #define RSA_F_RSA_PADDING_ADD_PKCS1_TYPE_1 108 #define RSA_F_RSA_PADDING_ADD_PKCS1_TYPE_2 109 #define RSA_F_RSA_PADDING_ADD_SSLV23 110 #define RSA_F_RSA_PADDING_ADD_X931 127 #define RSA_F_RSA_PADDING_CHECK_NONE 111 #define RSA_F_RSA_PADDING_CHECK_PKCS1_OAEP 122 #define RSA_F_RSA_PADDING_CHECK_PKCS1_TYPE_1 112 #define RSA_F_RSA_PADDING_CHECK_PKCS1_TYPE_2 113 #define RSA_F_RSA_PADDING_CHECK_SSLV23 114 #define RSA_F_RSA_PADDING_CHECK_X931 128 #define RSA_F_RSA_PRINT 115 #define RSA_F_RSA_PRINT_FP 116 #define RSA_F_RSA_PRIVATE_DECRYPT 150 #define RSA_F_RSA_PRIVATE_ENCRYPT 151 #define RSA_F_RSA_PRIV_DECODE 137 #define RSA_F_RSA_PRIV_ENCODE 138 #define RSA_F_RSA_PUBLIC_DECRYPT 152 #define RSA_F_RSA_PUBLIC_ENCRYPT 153 #define RSA_F_RSA_PUB_DECODE 139 #define RSA_F_RSA_SETUP_BLINDING 136 #define RSA_F_RSA_SIGN 117 #define RSA_F_RSA_SIGN_ASN1_OCTET_STRING 118 #define RSA_F_RSA_VERIFY 119 #define RSA_F_RSA_VERIFY_ASN1_OCTET_STRING 120 #define RSA_F_RSA_VERIFY_PKCS1_PSS 126 #define RSA_F_RSA_VERIFY_PKCS1_PSS_MGF1 149 #define RSA_R_ALGORITHM_MISMATCH 100 #define RSA_R_BAD_E_VALUE 101 #define RSA_R_BAD_FIXED_HEADER_DECRYPT 102 #define RSA_R_BAD_PAD_BYTE_COUNT 103 #define RSA_R_BAD_SIGNATURE 104 #define RSA_R_BLOCK_TYPE_IS_NOT_01 106 #define RSA_R_BLOCK_TYPE_IS_NOT_02 107 #define RSA_R_DATA_GREATER_THAN_MOD_LEN 108 #define RSA_R_DATA_TOO_LARGE 109 #define RSA_R_DATA_TOO_LARGE_FOR_KEY_SIZE 110 #define RSA_R_DATA_TOO_LARGE_FOR_MODULUS 132 #define RSA_R_DATA_TOO_SMALL 111 #define RSA_R_DATA_TOO_SMALL_FOR_KEY_SIZE 122 #define RSA_R_DIGEST_TOO_BIG_FOR_RSA_KEY 112 #define RSA_R_DMP1_NOT_CONGRUENT_TO_D 124 #define RSA_R_DMQ1_NOT_CONGRUENT_TO_D 125 #define RSA_R_D_E_NOT_CONGRUENT_TO_1 123 #define RSA_R_FIRST_OCTET_INVALID 133 #define RSA_R_ILLEGAL_OR_UNSUPPORTED_PADDING_MODE 144 #define RSA_R_INVALID_DIGEST_LENGTH 143 #define RSA_R_INVALID_HEADER 137 #define RSA_R_INVALID_KEYBITS 145 #define RSA_R_INVALID_MESSAGE_LENGTH 131 #define RSA_R_INVALID_MGF1_MD 156 #define RSA_R_INVALID_PADDING 138 #define RSA_R_INVALID_PADDING_MODE 141 #define RSA_R_INVALID_PSS_PARAMETERS 149 #define RSA_R_INVALID_PSS_SALTLEN 146 #define RSA_R_INVALID_SALT_LENGTH 150 #define RSA_R_INVALID_TRAILER 139 #define RSA_R_INVALID_X931_DIGEST 142 #define RSA_R_IQMP_NOT_INVERSE_OF_Q 126 #define RSA_R_KEY_SIZE_TOO_SMALL 120 #define RSA_R_LAST_OCTET_INVALID 134 #define RSA_R_MODULUS_TOO_LARGE 105 #define RSA_R_NON_FIPS_RSA_METHOD 157 #define RSA_R_NO_PUBLIC_EXPONENT 140 #define RSA_R_NULL_BEFORE_BLOCK_MISSING 113 #define RSA_R_N_DOES_NOT_EQUAL_P_Q 127 #define RSA_R_OAEP_DECODING_ERROR 121 #define RSA_R_OPERATION_NOT_ALLOWED_IN_FIPS_MODE 158 #define RSA_R_OPERATION_NOT_SUPPORTED_FOR_THIS_KEYTYPE 148 #define RSA_R_PADDING_CHECK_FAILED 114 #define RSA_R_P_NOT_PRIME 128 #define RSA_R_Q_NOT_PRIME 129 #define RSA_R_RSA_OPERATIONS_NOT_SUPPORTED 130 #define RSA_R_SLEN_CHECK_FAILED 136 #define RSA_R_SLEN_RECOVERY_FAILED 135 #define RSA_R_SSLV3_ROLLBACK_ATTACK 115 #define RSA_R_THE_ASN1_OBJECT_IDENTIFIER_IS_NOT_KNOWN_FOR_THIS_MD 116 #define RSA_R_UNKNOWN_ALGORITHM_TYPE 117 #define RSA_R_UNKNOWN_MASK_DIGEST 151 #define RSA_R_UNKNOWN_PADDING_TYPE 118 #define RSA_R_UNKNOWN_PSS_DIGEST 152 #define RSA_R_UNSUPPORTED_MASK_ALGORITHM 153 #define RSA_R_UNSUPPORTED_MASK_PARAMETER 154 #define RSA_R_UNSUPPORTED_SIGNATURE_TYPE 155 #define RSA_R_VALUE_MISSING 147 #define RSA_R_WRONG_SIGNATURE_LENGTH 119 # 97 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/dsa.h" 1 3 4 # 66 "/usr/include/openssl/dsa.h" 3 4 #define HEADER_DSA_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 69 "/usr/include/openssl/dsa.h" 2 3 4 # 83 "/usr/include/openssl/dsa.h" 3 4 # 1 "/usr/include/openssl/dh.h" 1 3 4 # 60 "/usr/include/openssl/dh.h" 3 4 #define HEADER_DH_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/dh.h" 2 3 4 # 77 "/usr/include/openssl/dh.h" 3 4 #define OPENSSL_DH_MAX_MODULUS_BITS 10000 #define DH_FLAG_CACHE_MONT_P 0x01 #define DH_FLAG_NO_EXP_CONSTTIME 0x02 # 95 "/usr/include/openssl/dh.h" 3 4 #define DH_FLAG_FIPS_METHOD 0x0400 #define DH_FLAG_NON_FIPS_ALLOW 0x0400 # 112 "/usr/include/openssl/dh.h" 3 4 struct dh_method { const char *name; int (*generate_key)(DH *dh); int (*compute_key)(unsigned char *key,const BIGNUM *pub_key,DH *dh); int (*bn_mod_exp)(const DH *dh, BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(DH *dh); int (*finish)(DH *dh); int flags; char *app_data; int (*generate_params)(DH *dh, int prime_len, int generator, BN_GENCB *cb); }; struct dh_st { int pad; int version; BIGNUM *p; BIGNUM *g; long length; BIGNUM *pub_key; BIGNUM *priv_key; int flags; BN_MONT_CTX *method_mont_p; BIGNUM *q; BIGNUM *j; unsigned char *seed; int seedlen; BIGNUM *counter; int references; CRYPTO_EX_DATA ex_data; const DH_METHOD *meth; ENGINE *engine; }; #define DH_GENERATOR_2 2 #define DH_GENERATOR_5 5 #define DH_CHECK_P_NOT_PRIME 0x01 #define DH_CHECK_P_NOT_SAFE_PRIME 0x02 #define DH_UNABLE_TO_CHECK_GENERATOR 0x04 #define DH_NOT_SUITABLE_GENERATOR 0x08 #define DH_CHECK_PUBKEY_TOO_SMALL 0x01 #define DH_CHECK_PUBKEY_TOO_LARGE 0x02 #define DH_CHECK_P_NOT_STRONG_PRIME DH_CHECK_P_NOT_SAFE_PRIME #define d2i_DHparams_fp(fp,x) (DH *)ASN1_d2i_fp((char *(*)())DH_new, (char *(*)())d2i_DHparams,(fp),(unsigned char **)(x)) #define i2d_DHparams_fp(fp,x) ASN1_i2d_fp(i2d_DHparams,(fp), (unsigned char *)(x)) #define d2i_DHparams_bio(bp,x) ASN1_d2i_bio_of(DH,DH_new,d2i_DHparams,bp,x) #define i2d_DHparams_bio(bp,x) ASN1_i2d_bio_of_const(DH,i2d_DHparams,bp,x) DH *DHparams_dup(DH *); const DH_METHOD *DH_OpenSSL(void); void DH_set_default_method(const DH_METHOD *meth); const DH_METHOD *DH_get_default_method(void); int DH_set_method(DH *dh, const DH_METHOD *meth); DH *DH_new_method(ENGINE *engine); DH * DH_new(void); void DH_free(DH *dh); int DH_up_ref(DH *dh); int DH_size(const DH *dh); int DH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int DH_set_ex_data(DH *d, int idx, void *arg); void *DH_get_ex_data(DH *d, int idx); DH * DH_generate_parameters(int prime_len,int generator, void (*callback)(int,int,void *),void *cb_arg); int DH_generate_parameters_ex(DH *dh, int prime_len,int generator, BN_GENCB *cb); int DH_check(const DH *dh,int *codes); int DH_check_pub_key(const DH *dh,const BIGNUM *pub_key, int *codes); int DH_generate_key(DH *dh); int DH_compute_key(unsigned char *key,const BIGNUM *pub_key,DH *dh); DH * d2i_DHparams(DH **a,const unsigned char **pp, long length); int i2d_DHparams(const DH *a,unsigned char **pp); int DHparams_print_fp(FILE *fp, const DH *x); int DHparams_print(BIO *bp, const DH *x); #define EVP_PKEY_CTX_set_dh_paramgen_prime_len(ctx,len) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_DH, EVP_PKEY_OP_PARAMGEN, EVP_PKEY_CTRL_DH_PARAMGEN_PRIME_LEN, len, NULL) #define EVP_PKEY_CTX_set_dh_paramgen_generator(ctx,gen) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_DH, EVP_PKEY_OP_PARAMGEN, EVP_PKEY_CTRL_DH_PARAMGEN_GENERATOR, gen, NULL) #define EVP_PKEY_CTRL_DH_PARAMGEN_PRIME_LEN (EVP_PKEY_ALG_CTRL + 1) #define EVP_PKEY_CTRL_DH_PARAMGEN_GENERATOR (EVP_PKEY_ALG_CTRL + 2) void ERR_load_DH_strings(void); #define DH_F_COMPUTE_KEY 102 #define DH_F_DHPARAMS_PRINT_FP 101 #define DH_F_DH_BUILTIN_GENPARAMS 106 #define DH_F_DH_COMPUTE_KEY 114 #define DH_F_DH_GENERATE_KEY 115 #define DH_F_DH_GENERATE_PARAMETERS_EX 116 #define DH_F_DH_NEW_METHOD 105 #define DH_F_DH_PARAM_DECODE 107 #define DH_F_DH_PRIV_DECODE 110 #define DH_F_DH_PRIV_ENCODE 111 #define DH_F_DH_PUB_DECODE 108 #define DH_F_DH_PUB_ENCODE 109 #define DH_F_DO_DH_PRINT 100 #define DH_F_GENERATE_KEY 103 #define DH_F_GENERATE_PARAMETERS 104 #define DH_F_PKEY_DH_DERIVE 112 #define DH_F_PKEY_DH_KEYGEN 113 #define DH_R_BAD_GENERATOR 101 #define DH_R_BN_DECODE_ERROR 109 #define DH_R_BN_ERROR 106 #define DH_R_DECODE_ERROR 104 #define DH_R_INVALID_PUBKEY 102 #define DH_R_KEYS_NOT_SET 108 #define DH_R_KEY_SIZE_TOO_SMALL 110 #define DH_R_MODULUS_TOO_LARGE 103 #define DH_R_NON_FIPS_METHOD 111 #define DH_R_NO_PARAMETERS_SET 107 #define DH_R_NO_PRIVATE_VALUE 100 #define DH_R_PARAMETER_ENCODING_ERROR 105 # 84 "/usr/include/openssl/dsa.h" 2 3 4 #define OPENSSL_DSA_MAX_MODULUS_BITS 10000 #define DSA_FLAG_CACHE_MONT_P 0x01 #define DSA_FLAG_NO_EXP_CONSTTIME 0x02 # 106 "/usr/include/openssl/dsa.h" 3 4 #define DSA_FLAG_FIPS_METHOD 0x0400 #define DSA_FLAG_NON_FIPS_ALLOW 0x0400 # 123 "/usr/include/openssl/dsa.h" 3 4 typedef struct DSA_SIG_st { BIGNUM *r; BIGNUM *s; } DSA_SIG; struct dsa_method { const char *name; DSA_SIG * (*dsa_do_sign)(const unsigned char *dgst, int dlen, DSA *dsa); int (*dsa_sign_setup)(DSA *dsa, BN_CTX *ctx_in, BIGNUM **kinvp, BIGNUM **rp); int (*dsa_do_verify)(const unsigned char *dgst, int dgst_len, DSA_SIG *sig, DSA *dsa); int (*dsa_mod_exp)(DSA *dsa, BIGNUM *rr, BIGNUM *a1, BIGNUM *p1, BIGNUM *a2, BIGNUM *p2, BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont); int (*bn_mod_exp)(DSA *dsa, BIGNUM *r, BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(DSA *dsa); int (*finish)(DSA *dsa); int flags; char *app_data; int (*dsa_paramgen)(DSA *dsa, int bits, const unsigned char *seed, int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int (*dsa_keygen)(DSA *dsa); }; struct dsa_st { int pad; long version; int write_params; BIGNUM *p; BIGNUM *q; BIGNUM *g; BIGNUM *pub_key; BIGNUM *priv_key; BIGNUM *kinv; BIGNUM *r; int flags; BN_MONT_CTX *method_mont_p; int references; CRYPTO_EX_DATA ex_data; const DSA_METHOD *meth; ENGINE *engine; }; #define d2i_DSAparams_fp(fp,x) (DSA *)ASN1_d2i_fp((char *(*)())DSA_new, (char *(*)())d2i_DSAparams,(fp),(unsigned char **)(x)) #define i2d_DSAparams_fp(fp,x) ASN1_i2d_fp(i2d_DSAparams,(fp), (unsigned char *)(x)) #define d2i_DSAparams_bio(bp,x) ASN1_d2i_bio_of(DSA,DSA_new,d2i_DSAparams,bp,x) #define i2d_DSAparams_bio(bp,x) ASN1_i2d_bio_of_const(DSA,i2d_DSAparams,bp,x) DSA *DSAparams_dup(DSA *x); DSA_SIG * DSA_SIG_new(void); void DSA_SIG_free(DSA_SIG *a); int i2d_DSA_SIG(const DSA_SIG *a, unsigned char **pp); DSA_SIG * d2i_DSA_SIG(DSA_SIG **v, const unsigned char **pp, long length); DSA_SIG * DSA_do_sign(const unsigned char *dgst,int dlen,DSA *dsa); int DSA_do_verify(const unsigned char *dgst,int dgst_len, DSA_SIG *sig,DSA *dsa); const DSA_METHOD *DSA_OpenSSL(void); void DSA_set_default_method(const DSA_METHOD *); const DSA_METHOD *DSA_get_default_method(void); int DSA_set_method(DSA *dsa, const DSA_METHOD *); DSA * DSA_new(void); DSA * DSA_new_method(ENGINE *engine); void DSA_free (DSA *r); int DSA_up_ref(DSA *r); int DSA_size(const DSA *); int DSA_sign_setup( DSA *dsa,BN_CTX *ctx_in,BIGNUM **kinvp,BIGNUM **rp); int DSA_sign(int type,const unsigned char *dgst,int dlen, unsigned char *sig, unsigned int *siglen, DSA *dsa); int DSA_verify(int type,const unsigned char *dgst,int dgst_len, const unsigned char *sigbuf, int siglen, DSA *dsa); int DSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int DSA_set_ex_data(DSA *d, int idx, void *arg); void *DSA_get_ex_data(DSA *d, int idx); DSA * d2i_DSAPublicKey(DSA **a, const unsigned char **pp, long length); DSA * d2i_DSAPrivateKey(DSA **a, const unsigned char **pp, long length); DSA * d2i_DSAparams(DSA **a, const unsigned char **pp, long length); DSA * DSA_generate_parameters(int bits, unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret,void (*callback)(int, int, void *),void *cb_arg); int DSA_generate_parameters_ex(DSA *dsa, int bits, const unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int DSA_generate_key(DSA *a); int i2d_DSAPublicKey(const DSA *a, unsigned char **pp); int i2d_DSAPrivateKey(const DSA *a, unsigned char **pp); int i2d_DSAparams(const DSA *a,unsigned char **pp); int DSAparams_print(BIO *bp, const DSA *x); int DSA_print(BIO *bp, const DSA *x, int off); int DSAparams_print_fp(FILE *fp, const DSA *x); int DSA_print_fp(FILE *bp, const DSA *x, int off); #define DSS_prime_checks 50 #define DSA_is_prime(n,callback,cb_arg) BN_is_prime(n, DSS_prime_checks, callback, NULL, cb_arg) DH *DSA_dup_DH(const DSA *r); #define EVP_PKEY_CTX_set_dsa_paramgen_bits(ctx,nbits) EVP_PKEY_CTX_ctrl(ctx, EVP_PKEY_DSA, EVP_PKEY_OP_PARAMGEN, EVP_PKEY_CTRL_DSA_PARAMGEN_BITS, nbits, NULL) #define EVP_PKEY_CTRL_DSA_PARAMGEN_BITS (EVP_PKEY_ALG_CTRL + 1) #define EVP_PKEY_CTRL_DSA_PARAMGEN_Q_BITS (EVP_PKEY_ALG_CTRL + 2) #define EVP_PKEY_CTRL_DSA_PARAMGEN_MD (EVP_PKEY_ALG_CTRL + 3) void ERR_load_DSA_strings(void); #define DSA_F_D2I_DSA_SIG 110 #define DSA_F_DO_DSA_PRINT 104 #define DSA_F_DSAPARAMS_PRINT 100 #define DSA_F_DSAPARAMS_PRINT_FP 101 #define DSA_F_DSA_DO_SIGN 112 #define DSA_F_DSA_DO_VERIFY 113 #define DSA_F_DSA_GENERATE_KEY 124 #define DSA_F_DSA_GENERATE_PARAMETERS_EX 123 #define DSA_F_DSA_NEW_METHOD 103 #define DSA_F_DSA_PARAM_DECODE 119 #define DSA_F_DSA_PRINT_FP 105 #define DSA_F_DSA_PRIV_DECODE 115 #define DSA_F_DSA_PRIV_ENCODE 116 #define DSA_F_DSA_PUB_DECODE 117 #define DSA_F_DSA_PUB_ENCODE 118 #define DSA_F_DSA_SIGN 106 #define DSA_F_DSA_SIGN_SETUP 107 #define DSA_F_DSA_SIG_NEW 109 #define DSA_F_DSA_SIG_PRINT 125 #define DSA_F_DSA_VERIFY 108 #define DSA_F_I2D_DSA_SIG 111 #define DSA_F_OLD_DSA_PRIV_DECODE 122 #define DSA_F_PKEY_DSA_CTRL 120 #define DSA_F_PKEY_DSA_KEYGEN 121 #define DSA_F_SIG_CB 114 #define DSA_R_BAD_Q_VALUE 102 #define DSA_R_BN_DECODE_ERROR 108 #define DSA_R_BN_ERROR 109 #define DSA_R_DATA_TOO_LARGE_FOR_KEY_SIZE 100 #define DSA_R_DECODE_ERROR 104 #define DSA_R_INVALID_DIGEST_TYPE 106 #define DSA_R_MISSING_PARAMETERS 101 #define DSA_R_MODULUS_TOO_LARGE 103 #define DSA_R_NEED_NEW_SETUP_VALUES 110 #define DSA_R_NON_FIPS_DSA_METHOD 111 #define DSA_R_NO_PARAMETERS_SET 107 #define DSA_R_PARAMETER_ENCODING_ERROR 105 # 100 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/sha.h" 1 3 4 # 60 "/usr/include/openssl/sha.h" 3 4 #define HEADER_SHA_H # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 63 "/usr/include/openssl/sha.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 64 "/usr/include/openssl/sha.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 65 "/usr/include/openssl/sha.h" 2 3 4 # 91 "/usr/include/openssl/sha.h" 3 4 #define SHA_LONG unsigned int #define SHA_LBLOCK 16 #define SHA_CBLOCK (SHA_LBLOCK*4) #define SHA_LAST_BLOCK (SHA_CBLOCK-8) #define SHA_DIGEST_LENGTH 20 typedef struct SHAstate_st { unsigned int h0,h1,h2,h3,h4; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num; } SHA_CTX; int SHA_Init(SHA_CTX *c); int SHA_Update(SHA_CTX *c, const void *data, size_t len); int SHA_Final(unsigned char *md, SHA_CTX *c); unsigned char *SHA(const unsigned char *d, size_t n, unsigned char *md); void SHA_Transform(SHA_CTX *c, const unsigned char *data); int SHA1_Init(SHA_CTX *c); int SHA1_Update(SHA_CTX *c, const void *data, size_t len); int SHA1_Final(unsigned char *md, SHA_CTX *c); unsigned char *SHA1(const unsigned char *d, size_t n, unsigned char *md); void SHA1_Transform(SHA_CTX *c, const unsigned char *data); #define SHA256_CBLOCK (SHA_LBLOCK*4) #define SHA224_DIGEST_LENGTH 28 #define SHA256_DIGEST_LENGTH 32 typedef struct SHA256state_st { unsigned int h[8]; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num,md_len; } SHA256_CTX; int SHA224_Init(SHA256_CTX *c); int SHA224_Update(SHA256_CTX *c, const void *data, size_t len); int SHA224_Final(unsigned char *md, SHA256_CTX *c); unsigned char *SHA224(const unsigned char *d, size_t n,unsigned char *md); int SHA256_Init(SHA256_CTX *c); int SHA256_Update(SHA256_CTX *c, const void *data, size_t len); int SHA256_Final(unsigned char *md, SHA256_CTX *c); unsigned char *SHA256(const unsigned char *d, size_t n,unsigned char *md); void SHA256_Transform(SHA256_CTX *c, const unsigned char *data); #define SHA384_DIGEST_LENGTH 48 #define SHA512_DIGEST_LENGTH 64 #define SHA512_CBLOCK (SHA_LBLOCK*8) # 179 "/usr/include/openssl/sha.h" 3 4 #define SHA_LONG64 unsigned long long #define U64(C) C ##ULL typedef struct SHA512state_st { unsigned long long h[8]; unsigned long long Nl,Nh; union { unsigned long long d[16]; unsigned char p[(16*8)]; } u; unsigned int num,md_len; } SHA512_CTX; int SHA384_Init(SHA512_CTX *c); int SHA384_Update(SHA512_CTX *c, const void *data, size_t len); int SHA384_Final(unsigned char *md, SHA512_CTX *c); unsigned char *SHA384(const unsigned char *d, size_t n,unsigned char *md); int SHA512_Init(SHA512_CTX *c); int SHA512_Update(SHA512_CTX *c, const void *data, size_t len); int SHA512_Final(unsigned char *md, SHA512_CTX *c); unsigned char *SHA512(const unsigned char *d, size_t n,unsigned char *md); void SHA512_Transform(SHA512_CTX *c, const unsigned char *data); # 108 "/usr/include/openssl/x509.h" 2 3 4 # 122 "/usr/include/openssl/x509.h" 3 4 #define X509_FILETYPE_PEM 1 #define X509_FILETYPE_ASN1 2 #define X509_FILETYPE_DEFAULT 3 #define X509v3_KU_DIGITAL_SIGNATURE 0x0080 #define X509v3_KU_NON_REPUDIATION 0x0040 #define X509v3_KU_KEY_ENCIPHERMENT 0x0020 #define X509v3_KU_DATA_ENCIPHERMENT 0x0010 #define X509v3_KU_KEY_AGREEMENT 0x0008 #define X509v3_KU_KEY_CERT_SIGN 0x0004 #define X509v3_KU_CRL_SIGN 0x0002 #define X509v3_KU_ENCIPHER_ONLY 0x0001 #define X509v3_KU_DECIPHER_ONLY 0x8000 #define X509v3_KU_UNDEF 0xffff typedef struct X509_objects_st { int nid; int (*a2i)(void); int (*i2a)(void); } X509_OBJECTS; struct X509_algor_st { ASN1_OBJECT *algorithm; ASN1_TYPE *parameter; } ; typedef struct stack_st_X509_ALGOR X509_ALGORS; typedef struct X509_val_st { ASN1_TIME *notBefore; ASN1_TIME *notAfter; } X509_VAL; struct X509_pubkey_st { X509_ALGOR *algor; ASN1_BIT_STRING *public_key; EVP_PKEY *pkey; }; typedef struct X509_sig_st { X509_ALGOR *algor; ASN1_OCTET_STRING *digest; } X509_SIG; typedef struct X509_name_entry_st { ASN1_OBJECT *object; ASN1_STRING *value; int set; int size; } X509_NAME_ENTRY; struct stack_st_X509_NAME_ENTRY { _STACK stack; }; struct X509_name_st { struct stack_st_X509_NAME_ENTRY *entries; int modified; BUF_MEM *bytes; unsigned char *canon_enc; int canon_enclen; } ; struct stack_st_X509_NAME { _STACK stack; }; #define X509_EX_V_NETSCAPE_HACK 0x8000 #define X509_EX_V_INIT 0x0001 typedef struct X509_extension_st { ASN1_OBJECT *object; ASN1_BOOLEAN critical; ASN1_OCTET_STRING *value; } X509_EXTENSION; typedef struct stack_st_X509_EXTENSION X509_EXTENSIONS; struct stack_st_X509_EXTENSION { _STACK stack; }; typedef struct x509_attributes_st { ASN1_OBJECT *object; int single; union { char *ptr; struct stack_st_ASN1_TYPE *set; ASN1_TYPE *single; } value; } X509_ATTRIBUTE; struct stack_st_X509_ATTRIBUTE { _STACK stack; }; typedef struct X509_req_info_st { ASN1_ENCODING enc; ASN1_INTEGER *version; X509_NAME *subject; X509_PUBKEY *pubkey; struct stack_st_X509_ATTRIBUTE *attributes; } X509_REQ_INFO; typedef struct X509_req_st { X509_REQ_INFO *req_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; } X509_REQ; typedef struct x509_cinf_st { ASN1_INTEGER *version; ASN1_INTEGER *serialNumber; X509_ALGOR *signature; X509_NAME *issuer; X509_VAL *validity; X509_NAME *subject; X509_PUBKEY *key; ASN1_BIT_STRING *issuerUID; ASN1_BIT_STRING *subjectUID; struct stack_st_X509_EXTENSION *extensions; ASN1_ENCODING enc; } X509_CINF; typedef struct x509_cert_aux_st { struct stack_st_ASN1_OBJECT *trust; struct stack_st_ASN1_OBJECT *reject; ASN1_UTF8STRING *alias; ASN1_OCTET_STRING *keyid; struct stack_st_X509_ALGOR *other; } X509_CERT_AUX; struct x509_st { X509_CINF *cert_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int valid; int references; char *name; CRYPTO_EX_DATA ex_data; long ex_pathlen; long ex_pcpathlen; unsigned long ex_flags; unsigned long ex_kusage; unsigned long ex_xkusage; unsigned long ex_nscert; ASN1_OCTET_STRING *skid; AUTHORITY_KEYID *akid; X509_POLICY_CACHE *policy_cache; struct stack_st_DIST_POINT *crldp; struct stack_st_GENERAL_NAME *altname; NAME_CONSTRAINTS *nc; unsigned char sha1_hash[20]; X509_CERT_AUX *aux; } ; struct stack_st_X509 { _STACK stack; }; typedef struct x509_trust_st { int trust; int flags; int (*check_trust)(struct x509_trust_st *, X509 *, int); char *name; int arg1; void *arg2; } X509_TRUST; struct stack_st_X509_TRUST { _STACK stack; }; typedef struct x509_cert_pair_st { X509 *forward; X509 *reverse; } X509_CERT_PAIR; #define X509_TRUST_DEFAULT -1 #define X509_TRUST_COMPAT 1 #define X509_TRUST_SSL_CLIENT 2 #define X509_TRUST_SSL_SERVER 3 #define X509_TRUST_EMAIL 4 #define X509_TRUST_OBJECT_SIGN 5 #define X509_TRUST_OCSP_SIGN 6 #define X509_TRUST_OCSP_REQUEST 7 #define X509_TRUST_TSA 8 #define X509_TRUST_MIN 1 #define X509_TRUST_MAX 8 #define X509_TRUST_DYNAMIC 1 #define X509_TRUST_DYNAMIC_NAME 2 #define X509_TRUST_TRUSTED 1 #define X509_TRUST_REJECTED 2 #define X509_TRUST_UNTRUSTED 3 #define X509_FLAG_COMPAT 0 #define X509_FLAG_NO_HEADER 1L #define X509_FLAG_NO_VERSION (1L << 1) #define X509_FLAG_NO_SERIAL (1L << 2) #define X509_FLAG_NO_SIGNAME (1L << 3) #define X509_FLAG_NO_ISSUER (1L << 4) #define X509_FLAG_NO_VALIDITY (1L << 5) #define X509_FLAG_NO_SUBJECT (1L << 6) #define X509_FLAG_NO_PUBKEY (1L << 7) #define X509_FLAG_NO_EXTENSIONS (1L << 8) #define X509_FLAG_NO_SIGDUMP (1L << 9) #define X509_FLAG_NO_AUX (1L << 10) #define X509_FLAG_NO_ATTRIBUTES (1L << 11) #define XN_FLAG_SEP_MASK (0xf << 16) #define XN_FLAG_COMPAT 0 #define XN_FLAG_SEP_COMMA_PLUS (1 << 16) #define XN_FLAG_SEP_CPLUS_SPC (2 << 16) #define XN_FLAG_SEP_SPLUS_SPC (3 << 16) #define XN_FLAG_SEP_MULTILINE (4 << 16) #define XN_FLAG_DN_REV (1 << 20) #define XN_FLAG_FN_MASK (0x3 << 21) #define XN_FLAG_FN_SN 0 #define XN_FLAG_FN_LN (1 << 21) #define XN_FLAG_FN_OID (2 << 21) #define XN_FLAG_FN_NONE (3 << 21) #define XN_FLAG_SPC_EQ (1 << 23) #define XN_FLAG_DUMP_UNKNOWN_FIELDS (1 << 24) #define XN_FLAG_FN_ALIGN (1 << 25) #define XN_FLAG_RFC2253 (ASN1_STRFLGS_RFC2253 | XN_FLAG_SEP_COMMA_PLUS | XN_FLAG_DN_REV | XN_FLAG_FN_SN | XN_FLAG_DUMP_UNKNOWN_FIELDS) #define XN_FLAG_ONELINE (ASN1_STRFLGS_RFC2253 | ASN1_STRFLGS_ESC_QUOTE | XN_FLAG_SEP_CPLUS_SPC | XN_FLAG_SPC_EQ | XN_FLAG_FN_SN) #define XN_FLAG_MULTILINE (ASN1_STRFLGS_ESC_CTRL | ASN1_STRFLGS_ESC_MSB | XN_FLAG_SEP_MULTILINE | XN_FLAG_SPC_EQ | XN_FLAG_FN_LN | XN_FLAG_FN_ALIGN) struct x509_revoked_st { ASN1_INTEGER *serialNumber; ASN1_TIME *revocationDate; struct stack_st_X509_EXTENSION *extensions; struct stack_st_GENERAL_NAME *issuer; int reason; int sequence; }; struct stack_st_X509_REVOKED { _STACK stack; }; typedef struct X509_crl_info_st { ASN1_INTEGER *version; X509_ALGOR *sig_alg; X509_NAME *issuer; ASN1_TIME *lastUpdate; ASN1_TIME *nextUpdate; struct stack_st_X509_REVOKED *revoked; struct stack_st_X509_EXTENSION *extensions; ASN1_ENCODING enc; } X509_CRL_INFO; struct X509_crl_st { X509_CRL_INFO *crl; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; int flags; AUTHORITY_KEYID *akid; ISSUING_DIST_POINT *idp; int idp_flags; int idp_reasons; ASN1_INTEGER *crl_number; ASN1_INTEGER *base_crl_number; unsigned char sha1_hash[20]; struct stack_st_GENERAL_NAMES *issuers; const X509_CRL_METHOD *meth; void *meth_data; } ; struct stack_st_X509_CRL { _STACK stack; }; typedef struct private_key_st { int version; X509_ALGOR *enc_algor; ASN1_OCTET_STRING *enc_pkey; EVP_PKEY *dec_pkey; int key_length; char *key_data; int key_free; EVP_CIPHER_INFO cipher; int references; } X509_PKEY; typedef struct X509_info_st { X509 *x509; X509_CRL *crl; X509_PKEY *x_pkey; EVP_CIPHER_INFO enc_cipher; int enc_len; char *enc_data; int references; } X509_INFO; struct stack_st_X509_INFO { _STACK stack; }; typedef struct Netscape_spkac_st { X509_PUBKEY *pubkey; ASN1_IA5STRING *challenge; } NETSCAPE_SPKAC; typedef struct Netscape_spki_st { NETSCAPE_SPKAC *spkac; X509_ALGOR *sig_algor; ASN1_BIT_STRING *signature; } NETSCAPE_SPKI; typedef struct Netscape_certificate_sequence { ASN1_OBJECT *type; struct stack_st_X509 *certs; } NETSCAPE_CERT_SEQUENCE; # 560 "/usr/include/openssl/x509.h" 3 4 typedef struct PBEPARAM_st { ASN1_OCTET_STRING *salt; ASN1_INTEGER *iter; } PBEPARAM; typedef struct PBE2PARAM_st { X509_ALGOR *keyfunc; X509_ALGOR *encryption; } PBE2PARAM; typedef struct PBKDF2PARAM_st { ASN1_TYPE *salt; ASN1_INTEGER *iter; ASN1_INTEGER *keylength; X509_ALGOR *prf; } PBKDF2PARAM; struct pkcs8_priv_key_info_st { int broken; #define PKCS8_OK 0 #define PKCS8_NO_OCTET 1 #define PKCS8_EMBEDDED_PARAM 2 #define PKCS8_NS_DB 3 #define PKCS8_NEG_PRIVKEY 4 ASN1_INTEGER *version; X509_ALGOR *pkeyalg; ASN1_TYPE *pkey; struct stack_st_X509_ATTRIBUTE *attributes; }; # 1 "/usr/include/openssl/x509_vfy.h" 1 3 4 # 66 "/usr/include/openssl/x509_vfy.h" 3 4 #define HEADER_X509_VFY_H # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 69 "/usr/include/openssl/x509_vfy.h" 2 3 4 # 1 "/usr/include/openssl/lhash.h" 1 3 4 # 64 "/usr/include/openssl/lhash.h" 3 4 #define HEADER_LHASH_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 67 "/usr/include/openssl/lhash.h" 2 3 4 # 79 "/usr/include/openssl/lhash.h" 3 4 typedef struct lhash_node_st { void *data; struct lhash_node_st *next; unsigned long hash; } LHASH_NODE; typedef int (*LHASH_COMP_FN_TYPE)(const void *, const void *); typedef unsigned long (*LHASH_HASH_FN_TYPE)(const void *); typedef void (*LHASH_DOALL_FN_TYPE)(void *); typedef void (*LHASH_DOALL_ARG_FN_TYPE)(void *, void *); # 101 "/usr/include/openssl/lhash.h" 3 4 #define DECLARE_LHASH_HASH_FN(name,o_type) unsigned long name ##_LHASH_HASH(const void *); #define IMPLEMENT_LHASH_HASH_FN(name,o_type) unsigned long name ##_LHASH_HASH(const void *arg) { const o_type *a = arg; return name ##_hash(a); } #define LHASH_HASH_FN(name) name ##_LHASH_HASH #define DECLARE_LHASH_COMP_FN(name,o_type) int name ##_LHASH_COMP(const void *, const void *); #define IMPLEMENT_LHASH_COMP_FN(name,o_type) int name ##_LHASH_COMP(const void *arg1, const void *arg2) { const o_type *a = arg1; const o_type *b = arg2; return name ##_cmp(a,b); } #define LHASH_COMP_FN(name) name ##_LHASH_COMP #define DECLARE_LHASH_DOALL_FN(name,o_type) void name ##_LHASH_DOALL(void *); #define IMPLEMENT_LHASH_DOALL_FN(name,o_type) void name ##_LHASH_DOALL(void *arg) { o_type *a = arg; name ##_doall(a); } #define LHASH_DOALL_FN(name) name ##_LHASH_DOALL #define DECLARE_LHASH_DOALL_ARG_FN(name,o_type,a_type) void name ##_LHASH_DOALL_ARG(void *, void *); #define IMPLEMENT_LHASH_DOALL_ARG_FN(name,o_type,a_type) void name ##_LHASH_DOALL_ARG(void *arg1, void *arg2) { o_type *a = arg1; a_type *b = arg2; name ##_doall_arg(a, b); } #define LHASH_DOALL_ARG_FN(name) name ##_LHASH_DOALL_ARG typedef struct lhash_st { LHASH_NODE **b; LHASH_COMP_FN_TYPE comp; LHASH_HASH_FN_TYPE hash; unsigned int num_nodes; unsigned int num_alloc_nodes; unsigned int p; unsigned int pmax; unsigned long up_load; unsigned long down_load; unsigned long num_items; unsigned long num_expands; unsigned long num_expand_reallocs; unsigned long num_contracts; unsigned long num_contract_reallocs; unsigned long num_hash_calls; unsigned long num_comp_calls; unsigned long num_insert; unsigned long num_replace; unsigned long num_delete; unsigned long num_no_delete; unsigned long num_retrieve; unsigned long num_retrieve_miss; unsigned long num_hash_comps; int error; } _LHASH; #define LH_LOAD_MULT 256 #define lh_error(lh) ((lh)->error) _LHASH *lh_new(LHASH_HASH_FN_TYPE h, LHASH_COMP_FN_TYPE c); void lh_free(_LHASH *lh); void *lh_insert(_LHASH *lh, void *data); void *lh_delete(_LHASH *lh, const void *data); void *lh_retrieve(_LHASH *lh, const void *data); void lh_doall(_LHASH *lh, LHASH_DOALL_FN_TYPE func); void lh_doall_arg(_LHASH *lh, LHASH_DOALL_ARG_FN_TYPE func, void *arg); unsigned long lh_strhash(const char *c); unsigned long lh_num_items(const _LHASH *lh); void lh_stats(const _LHASH *lh, FILE *out); void lh_node_stats(const _LHASH *lh, FILE *out); void lh_node_usage_stats(const _LHASH *lh, FILE *out); void lh_stats_bio(const _LHASH *lh, BIO *out); void lh_node_stats_bio(const _LHASH *lh, BIO *out); void lh_node_usage_stats_bio(const _LHASH *lh, BIO *out); #define LHASH_OF(type) struct lhash_st_ ##type #define DECLARE_LHASH_OF(type) LHASH_OF(type) { int dummy; } #define CHECKED_LHASH_OF(type,lh) ((_LHASH *)CHECKED_PTR_OF(LHASH_OF(type),lh)) #define LHM_lh_new(type,name) ((LHASH_OF(type) *)lh_new(LHASH_HASH_FN(name), LHASH_COMP_FN(name))) #define LHM_lh_error(type,lh) lh_error(CHECKED_LHASH_OF(type,lh)) #define LHM_lh_insert(type,lh,inst) ((type *)lh_insert(CHECKED_LHASH_OF(type, lh), CHECKED_PTR_OF(type, inst))) #define LHM_lh_retrieve(type,lh,inst) ((type *)lh_retrieve(CHECKED_LHASH_OF(type, lh), CHECKED_PTR_OF(type, inst))) #define LHM_lh_delete(type,lh,inst) ((type *)lh_delete(CHECKED_LHASH_OF(type, lh), CHECKED_PTR_OF(type, inst))) #define LHM_lh_doall(type,lh,fn) lh_doall(CHECKED_LHASH_OF(type, lh), fn) #define LHM_lh_doall_arg(type,lh,fn,arg_type,arg) lh_doall_arg(CHECKED_LHASH_OF(type, lh), fn, CHECKED_PTR_OF(arg_type, arg)) #define LHM_lh_num_items(type,lh) lh_num_items(CHECKED_LHASH_OF(type, lh)) #define LHM_lh_down_load(type,lh) (CHECKED_LHASH_OF(type, lh)->down_load) #define LHM_lh_node_stats_bio(type,lh,out) lh_node_stats_bio(CHECKED_LHASH_OF(type, lh), out) #define LHM_lh_node_usage_stats_bio(type,lh,out) lh_node_usage_stats_bio(CHECKED_LHASH_OF(type, lh), out) #define LHM_lh_stats_bio(type,lh,out) lh_stats_bio(CHECKED_LHASH_OF(type, lh), out) #define LHM_lh_free(type,lh) lh_free(CHECKED_LHASH_OF(type, lh)) struct lhash_st_OPENSSL_STRING { int dummy; }; struct lhash_st_OPENSSL_CSTRING { int dummy; }; # 71 "/usr/include/openssl/x509_vfy.h" 2 3 4 # 91 "/usr/include/openssl/x509_vfy.h" 3 4 typedef struct x509_file_st { int num_paths; int num_alloced; char **paths; int *path_type; } X509_CERT_FILE_CTX; # 117 "/usr/include/openssl/x509_vfy.h" 3 4 #define X509_LU_RETRY -1 #define X509_LU_FAIL 0 #define X509_LU_X509 1 #define X509_LU_CRL 2 #define X509_LU_PKEY 3 typedef struct x509_object_st { int type; union { char *ptr; X509 *x509; X509_CRL *crl; EVP_PKEY *pkey; } data; } X509_OBJECT; typedef struct x509_lookup_st X509_LOOKUP; struct stack_st_X509_LOOKUP { _STACK stack; }; struct stack_st_X509_OBJECT { _STACK stack; }; typedef struct x509_lookup_method_st { const char *name; int (*new_item)(X509_LOOKUP *ctx); void (*free)(X509_LOOKUP *ctx); int (*init)(X509_LOOKUP *ctx); int (*shutdown)(X509_LOOKUP *ctx); int (*ctrl)(X509_LOOKUP *ctx,int cmd,const char *argc,long argl, char **ret); int (*get_by_subject)(X509_LOOKUP *ctx,int type,X509_NAME *name, X509_OBJECT *ret); int (*get_by_issuer_serial)(X509_LOOKUP *ctx,int type,X509_NAME *name, ASN1_INTEGER *serial,X509_OBJECT *ret); int (*get_by_fingerprint)(X509_LOOKUP *ctx,int type, unsigned char *bytes,int len, X509_OBJECT *ret); int (*get_by_alias)(X509_LOOKUP *ctx,int type,char *str,int len, X509_OBJECT *ret); } X509_LOOKUP_METHOD; typedef struct X509_VERIFY_PARAM_st { char *name; time_t check_time; unsigned long inh_flags; unsigned long flags; int purpose; int trust; int depth; struct stack_st_ASN1_OBJECT *policies; } X509_VERIFY_PARAM; struct stack_st_X509_VERIFY_PARAM { _STACK stack; }; struct x509_store_st { int cache; struct stack_st_X509_OBJECT *objs; struct stack_st_X509_LOOKUP *get_cert_methods; X509_VERIFY_PARAM *param; int (*verify)(X509_STORE_CTX *ctx); int (*verify_cb)(int ok,X509_STORE_CTX *ctx); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer); int (*check_revocation)(X509_STORE_CTX *ctx); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x); struct stack_st_X509 * (*lookup_certs)(X509_STORE_CTX *ctx, X509_NAME *nm); struct stack_st_X509_CRL * (*lookup_crls)(X509_STORE_CTX *ctx, X509_NAME *nm); int (*cleanup)(X509_STORE_CTX *ctx); CRYPTO_EX_DATA ex_data; int references; } ; int X509_STORE_set_depth(X509_STORE *store, int depth); #define X509_STORE_set_verify_cb_func(ctx,func) ((ctx)->verify_cb=(func)) #define X509_STORE_set_verify_func(ctx,func) ((ctx)->verify=(func)) struct x509_lookup_st { int init; int skip; X509_LOOKUP_METHOD *method; char *method_data; X509_STORE *store_ctx; } ; struct x509_store_ctx_st { X509_STORE *ctx; int current_method; X509 *cert; struct stack_st_X509 *untrusted; struct stack_st_X509_CRL *crls; X509_VERIFY_PARAM *param; void *other_ctx; int (*verify)(X509_STORE_CTX *ctx); int (*verify_cb)(int ok,X509_STORE_CTX *ctx); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer); int (*check_revocation)(X509_STORE_CTX *ctx); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x); int (*check_policy)(X509_STORE_CTX *ctx); struct stack_st_X509 * (*lookup_certs)(X509_STORE_CTX *ctx, X509_NAME *nm); struct stack_st_X509_CRL * (*lookup_crls)(X509_STORE_CTX *ctx, X509_NAME *nm); int (*cleanup)(X509_STORE_CTX *ctx); int valid; int last_untrusted; struct stack_st_X509 *chain; X509_POLICY_TREE *tree; int explicit_policy; int error_depth; int error; X509 *current_cert; X509 *current_issuer; X509_CRL *current_crl; int current_crl_score; unsigned int current_reasons; X509_STORE_CTX *parent; CRYPTO_EX_DATA ex_data; } ; void X509_STORE_CTX_set_depth(X509_STORE_CTX *ctx, int depth); #define X509_STORE_CTX_set_app_data(ctx,data) X509_STORE_CTX_set_ex_data(ctx,0,data) #define X509_STORE_CTX_get_app_data(ctx) X509_STORE_CTX_get_ex_data(ctx,0) #define X509_L_FILE_LOAD 1 #define X509_L_ADD_DIR 2 #define X509_LOOKUP_load_file(x,name,type) X509_LOOKUP_ctrl((x),X509_L_FILE_LOAD,(name),(long)(type),NULL) #define X509_LOOKUP_add_dir(x,name,type) X509_LOOKUP_ctrl((x),X509_L_ADD_DIR,(name),(long)(type),NULL) #define X509_V_OK 0 #define X509_V_ERR_UNABLE_TO_GET_ISSUER_CERT 2 #define X509_V_ERR_UNABLE_TO_GET_CRL 3 #define X509_V_ERR_UNABLE_TO_DECRYPT_CERT_SIGNATURE 4 #define X509_V_ERR_UNABLE_TO_DECRYPT_CRL_SIGNATURE 5 #define X509_V_ERR_UNABLE_TO_DECODE_ISSUER_PUBLIC_KEY 6 #define X509_V_ERR_CERT_SIGNATURE_FAILURE 7 #define X509_V_ERR_CRL_SIGNATURE_FAILURE 8 #define X509_V_ERR_CERT_NOT_YET_VALID 9 #define X509_V_ERR_CERT_HAS_EXPIRED 10 #define X509_V_ERR_CRL_NOT_YET_VALID 11 #define X509_V_ERR_CRL_HAS_EXPIRED 12 #define X509_V_ERR_ERROR_IN_CERT_NOT_BEFORE_FIELD 13 #define X509_V_ERR_ERROR_IN_CERT_NOT_AFTER_FIELD 14 #define X509_V_ERR_ERROR_IN_CRL_LAST_UPDATE_FIELD 15 #define X509_V_ERR_ERROR_IN_CRL_NEXT_UPDATE_FIELD 16 #define X509_V_ERR_OUT_OF_MEM 17 #define X509_V_ERR_DEPTH_ZERO_SELF_SIGNED_CERT 18 #define X509_V_ERR_SELF_SIGNED_CERT_IN_CHAIN 19 #define X509_V_ERR_UNABLE_TO_GET_ISSUER_CERT_LOCALLY 20 #define X509_V_ERR_UNABLE_TO_VERIFY_LEAF_SIGNATURE 21 #define X509_V_ERR_CERT_CHAIN_TOO_LONG 22 #define X509_V_ERR_CERT_REVOKED 23 #define X509_V_ERR_INVALID_CA 24 #define X509_V_ERR_PATH_LENGTH_EXCEEDED 25 #define X509_V_ERR_INVALID_PURPOSE 26 #define X509_V_ERR_CERT_UNTRUSTED 27 #define X509_V_ERR_CERT_REJECTED 28 #define X509_V_ERR_SUBJECT_ISSUER_MISMATCH 29 #define X509_V_ERR_AKID_SKID_MISMATCH 30 #define X509_V_ERR_AKID_ISSUER_SERIAL_MISMATCH 31 #define X509_V_ERR_KEYUSAGE_NO_CERTSIGN 32 #define X509_V_ERR_UNABLE_TO_GET_CRL_ISSUER 33 #define X509_V_ERR_UNHANDLED_CRITICAL_EXTENSION 34 #define X509_V_ERR_KEYUSAGE_NO_CRL_SIGN 35 #define X509_V_ERR_UNHANDLED_CRITICAL_CRL_EXTENSION 36 #define X509_V_ERR_INVALID_NON_CA 37 #define X509_V_ERR_PROXY_PATH_LENGTH_EXCEEDED 38 #define X509_V_ERR_KEYUSAGE_NO_DIGITAL_SIGNATURE 39 #define X509_V_ERR_PROXY_CERTIFICATES_NOT_ALLOWED 40 #define X509_V_ERR_INVALID_EXTENSION 41 #define X509_V_ERR_INVALID_POLICY_EXTENSION 42 #define X509_V_ERR_NO_EXPLICIT_POLICY 43 #define X509_V_ERR_DIFFERENT_CRL_SCOPE 44 #define X509_V_ERR_UNSUPPORTED_EXTENSION_FEATURE 45 #define X509_V_ERR_UNNESTED_RESOURCE 46 #define X509_V_ERR_PERMITTED_VIOLATION 47 #define X509_V_ERR_EXCLUDED_VIOLATION 48 #define X509_V_ERR_SUBTREE_MINMAX 49 #define X509_V_ERR_UNSUPPORTED_CONSTRAINT_TYPE 51 #define X509_V_ERR_UNSUPPORTED_CONSTRAINT_SYNTAX 52 #define X509_V_ERR_UNSUPPORTED_NAME_SYNTAX 53 #define X509_V_ERR_CRL_PATH_VALIDATION_ERROR 54 #define X509_V_ERR_APPLICATION_VERIFICATION 50 #define X509_V_FLAG_CB_ISSUER_CHECK 0x1 #define X509_V_FLAG_USE_CHECK_TIME 0x2 #define X509_V_FLAG_CRL_CHECK 0x4 #define X509_V_FLAG_CRL_CHECK_ALL 0x8 #define X509_V_FLAG_IGNORE_CRITICAL 0x10 #define X509_V_FLAG_X509_STRICT 0x20 #define X509_V_FLAG_ALLOW_PROXY_CERTS 0x40 #define X509_V_FLAG_POLICY_CHECK 0x80 #define X509_V_FLAG_EXPLICIT_POLICY 0x100 #define X509_V_FLAG_INHIBIT_ANY 0x200 #define X509_V_FLAG_INHIBIT_MAP 0x400 #define X509_V_FLAG_NOTIFY_POLICY 0x800 #define X509_V_FLAG_EXTENDED_CRL_SUPPORT 0x1000 #define X509_V_FLAG_USE_DELTAS 0x2000 #define X509_V_FLAG_CHECK_SS_SIGNATURE 0x4000 #define X509_V_FLAG_NO_ALT_CHAINS 0x100000 #define X509_VP_FLAG_DEFAULT 0x1 #define X509_VP_FLAG_OVERWRITE 0x2 #define X509_VP_FLAG_RESET_FLAGS 0x4 #define X509_VP_FLAG_LOCKED 0x8 #define X509_VP_FLAG_ONCE 0x10 #define X509_V_FLAG_POLICY_MASK (X509_V_FLAG_POLICY_CHECK | X509_V_FLAG_EXPLICIT_POLICY | X509_V_FLAG_INHIBIT_ANY | X509_V_FLAG_INHIBIT_MAP) int X509_OBJECT_idx_by_subject(struct stack_st_X509_OBJECT *h, int type, X509_NAME *name); X509_OBJECT *X509_OBJECT_retrieve_by_subject(struct stack_st_X509_OBJECT *h,int type,X509_NAME *name); X509_OBJECT *X509_OBJECT_retrieve_match(struct stack_st_X509_OBJECT *h, X509_OBJECT *x); void X509_OBJECT_up_ref_count(X509_OBJECT *a); void X509_OBJECT_free_contents(X509_OBJECT *a); X509_STORE *X509_STORE_new(void ); void X509_STORE_free(X509_STORE *v); struct stack_st_X509* X509_STORE_get1_certs(X509_STORE_CTX *st, X509_NAME *nm); struct stack_st_X509_CRL* X509_STORE_get1_crls(X509_STORE_CTX *st, X509_NAME *nm); int X509_STORE_set_flags(X509_STORE *ctx, unsigned long flags); int X509_STORE_set_purpose(X509_STORE *ctx, int purpose); int X509_STORE_set_trust(X509_STORE *ctx, int trust); int X509_STORE_set1_param(X509_STORE *ctx, X509_VERIFY_PARAM *pm); void X509_STORE_set_verify_cb(X509_STORE *ctx, int (*verify_cb)(int, X509_STORE_CTX *)); X509_STORE_CTX *X509_STORE_CTX_new(void); int X509_STORE_CTX_get1_issuer(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); void X509_STORE_CTX_free(X509_STORE_CTX *ctx); int X509_STORE_CTX_init(X509_STORE_CTX *ctx, X509_STORE *store, X509 *x509, struct stack_st_X509 *chain); void X509_STORE_CTX_trusted_stack(X509_STORE_CTX *ctx, struct stack_st_X509 *sk); void X509_STORE_CTX_cleanup(X509_STORE_CTX *ctx); X509_LOOKUP *X509_STORE_add_lookup(X509_STORE *v, X509_LOOKUP_METHOD *m); X509_LOOKUP_METHOD *X509_LOOKUP_hash_dir(void); X509_LOOKUP_METHOD *X509_LOOKUP_file(void); int X509_STORE_add_cert(X509_STORE *ctx, X509 *x); int X509_STORE_add_crl(X509_STORE *ctx, X509_CRL *x); int X509_STORE_get_by_subject(X509_STORE_CTX *vs,int type,X509_NAME *name, X509_OBJECT *ret); int X509_LOOKUP_ctrl(X509_LOOKUP *ctx, int cmd, const char *argc, long argl, char **ret); int X509_load_cert_file(X509_LOOKUP *ctx, const char *file, int type); int X509_load_crl_file(X509_LOOKUP *ctx, const char *file, int type); int X509_load_cert_crl_file(X509_LOOKUP *ctx, const char *file, int type); X509_LOOKUP *X509_LOOKUP_new(X509_LOOKUP_METHOD *method); void X509_LOOKUP_free(X509_LOOKUP *ctx); int X509_LOOKUP_init(X509_LOOKUP *ctx); int X509_LOOKUP_by_subject(X509_LOOKUP *ctx, int type, X509_NAME *name, X509_OBJECT *ret); int X509_LOOKUP_by_issuer_serial(X509_LOOKUP *ctx, int type, X509_NAME *name, ASN1_INTEGER *serial, X509_OBJECT *ret); int X509_LOOKUP_by_fingerprint(X509_LOOKUP *ctx, int type, unsigned char *bytes, int len, X509_OBJECT *ret); int X509_LOOKUP_by_alias(X509_LOOKUP *ctx, int type, char *str, int len, X509_OBJECT *ret); int X509_LOOKUP_shutdown(X509_LOOKUP *ctx); int X509_STORE_load_locations (X509_STORE *ctx, const char *file, const char *dir); int X509_STORE_set_default_paths(X509_STORE *ctx); int X509_STORE_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int X509_STORE_CTX_set_ex_data(X509_STORE_CTX *ctx,int idx,void *data); void * X509_STORE_CTX_get_ex_data(X509_STORE_CTX *ctx,int idx); int X509_STORE_CTX_get_error(X509_STORE_CTX *ctx); void X509_STORE_CTX_set_error(X509_STORE_CTX *ctx,int s); int X509_STORE_CTX_get_error_depth(X509_STORE_CTX *ctx); X509 * X509_STORE_CTX_get_current_cert(X509_STORE_CTX *ctx); X509 *X509_STORE_CTX_get0_current_issuer(X509_STORE_CTX *ctx); X509_CRL *X509_STORE_CTX_get0_current_crl(X509_STORE_CTX *ctx); X509_STORE_CTX *X509_STORE_CTX_get0_parent_ctx(X509_STORE_CTX *ctx); struct stack_st_X509 *X509_STORE_CTX_get_chain(X509_STORE_CTX *ctx); struct stack_st_X509 *X509_STORE_CTX_get1_chain(X509_STORE_CTX *ctx); void X509_STORE_CTX_set_cert(X509_STORE_CTX *c,X509 *x); void X509_STORE_CTX_set_chain(X509_STORE_CTX *c,struct stack_st_X509 *sk); void X509_STORE_CTX_set0_crls(X509_STORE_CTX *c,struct stack_st_X509_CRL *sk); int X509_STORE_CTX_set_purpose(X509_STORE_CTX *ctx, int purpose); int X509_STORE_CTX_set_trust(X509_STORE_CTX *ctx, int trust); int X509_STORE_CTX_purpose_inherit(X509_STORE_CTX *ctx, int def_purpose, int purpose, int trust); void X509_STORE_CTX_set_flags(X509_STORE_CTX *ctx, unsigned long flags); void X509_STORE_CTX_set_time(X509_STORE_CTX *ctx, unsigned long flags, time_t t); void X509_STORE_CTX_set_verify_cb(X509_STORE_CTX *ctx, int (*verify_cb)(int, X509_STORE_CTX *)); X509_POLICY_TREE *X509_STORE_CTX_get0_policy_tree(X509_STORE_CTX *ctx); int X509_STORE_CTX_get_explicit_policy(X509_STORE_CTX *ctx); X509_VERIFY_PARAM *X509_STORE_CTX_get0_param(X509_STORE_CTX *ctx); void X509_STORE_CTX_set0_param(X509_STORE_CTX *ctx, X509_VERIFY_PARAM *param); int X509_STORE_CTX_set_default(X509_STORE_CTX *ctx, const char *name); X509_VERIFY_PARAM *X509_VERIFY_PARAM_new(void); void X509_VERIFY_PARAM_free(X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_inherit(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from); int X509_VERIFY_PARAM_set1(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from); int X509_VERIFY_PARAM_set1_name(X509_VERIFY_PARAM *param, const char *name); int X509_VERIFY_PARAM_set_flags(X509_VERIFY_PARAM *param, unsigned long flags); int X509_VERIFY_PARAM_clear_flags(X509_VERIFY_PARAM *param, unsigned long flags); unsigned long X509_VERIFY_PARAM_get_flags(X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_set_purpose(X509_VERIFY_PARAM *param, int purpose); int X509_VERIFY_PARAM_set_trust(X509_VERIFY_PARAM *param, int trust); void X509_VERIFY_PARAM_set_depth(X509_VERIFY_PARAM *param, int depth); void X509_VERIFY_PARAM_set_time(X509_VERIFY_PARAM *param, time_t t); int X509_VERIFY_PARAM_add0_policy(X509_VERIFY_PARAM *param, ASN1_OBJECT *policy); int X509_VERIFY_PARAM_set1_policies(X509_VERIFY_PARAM *param, struct stack_st_ASN1_OBJECT *policies); int X509_VERIFY_PARAM_get_depth(const X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_add0_table(X509_VERIFY_PARAM *param); const X509_VERIFY_PARAM *X509_VERIFY_PARAM_lookup(const char *name); void X509_VERIFY_PARAM_table_cleanup(void); int X509_policy_check(X509_POLICY_TREE **ptree, int *pexplicit_policy, struct stack_st_X509 *certs, struct stack_st_ASN1_OBJECT *policy_oids, unsigned int flags); void X509_policy_tree_free(X509_POLICY_TREE *tree); int X509_policy_tree_level_count(const X509_POLICY_TREE *tree); X509_POLICY_LEVEL * X509_policy_tree_get0_level(const X509_POLICY_TREE *tree, int i); struct stack_st_X509_POLICY_NODE * X509_policy_tree_get0_policies(const X509_POLICY_TREE *tree); struct stack_st_X509_POLICY_NODE * X509_policy_tree_get0_user_policies(const X509_POLICY_TREE *tree); int X509_policy_level_node_count(X509_POLICY_LEVEL *level); X509_POLICY_NODE *X509_policy_level_get0_node(X509_POLICY_LEVEL *level, int i); const ASN1_OBJECT *X509_policy_node_get0_policy(const X509_POLICY_NODE *node); struct stack_st_POLICYQUALINFO * X509_policy_node_get0_qualifiers(const X509_POLICY_NODE *node); const X509_POLICY_NODE * X509_policy_node_get0_parent(const X509_POLICY_NODE *node); # 601 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/pkcs7.h" 1 3 4 # 60 "/usr/include/openssl/pkcs7.h" 3 4 #define HEADER_PKCS7_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 65 "/usr/include/openssl/pkcs7.h" 2 3 4 # 86 "/usr/include/openssl/pkcs7.h" 3 4 typedef struct pkcs7_issuer_and_serial_st { X509_NAME *issuer; ASN1_INTEGER *serial; } PKCS7_ISSUER_AND_SERIAL; typedef struct pkcs7_signer_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *digest_alg; struct stack_st_X509_ATTRIBUTE *auth_attr; X509_ALGOR *digest_enc_alg; ASN1_OCTET_STRING *enc_digest; struct stack_st_X509_ATTRIBUTE *unauth_attr; EVP_PKEY *pkey; } PKCS7_SIGNER_INFO; struct stack_st_PKCS7_SIGNER_INFO { _STACK stack; }; typedef struct pkcs7_recip_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *key_enc_algor; ASN1_OCTET_STRING *enc_key; X509 *cert; } PKCS7_RECIP_INFO; struct stack_st_PKCS7_RECIP_INFO { _STACK stack; }; typedef struct pkcs7_signed_st { ASN1_INTEGER *version; struct stack_st_X509_ALGOR *md_algs; struct stack_st_X509 *cert; struct stack_st_X509_CRL *crl; struct stack_st_PKCS7_SIGNER_INFO *signer_info; struct pkcs7_st *contents; } PKCS7_SIGNED; typedef struct pkcs7_enc_content_st { ASN1_OBJECT *content_type; X509_ALGOR *algorithm; ASN1_OCTET_STRING *enc_data; const EVP_CIPHER *cipher; } PKCS7_ENC_CONTENT; typedef struct pkcs7_enveloped_st { ASN1_INTEGER *version; struct stack_st_PKCS7_RECIP_INFO *recipientinfo; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENVELOPE; typedef struct pkcs7_signedandenveloped_st { ASN1_INTEGER *version; struct stack_st_X509_ALGOR *md_algs; struct stack_st_X509 *cert; struct stack_st_X509_CRL *crl; struct stack_st_PKCS7_SIGNER_INFO *signer_info; PKCS7_ENC_CONTENT *enc_data; struct stack_st_PKCS7_RECIP_INFO *recipientinfo; } PKCS7_SIGN_ENVELOPE; typedef struct pkcs7_digest_st { ASN1_INTEGER *version; X509_ALGOR *md; struct pkcs7_st *contents; ASN1_OCTET_STRING *digest; } PKCS7_DIGEST; typedef struct pkcs7_encrypted_st { ASN1_INTEGER *version; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENCRYPT; typedef struct pkcs7_st { unsigned char *asn1; long length; #define PKCS7_S_HEADER 0 #define PKCS7_S_BODY 1 #define PKCS7_S_TAIL 2 int state; int detached; ASN1_OBJECT *type; union { char *ptr; ASN1_OCTET_STRING *data; PKCS7_SIGNED *sign; PKCS7_ENVELOPE *enveloped; PKCS7_SIGN_ENVELOPE *signed_and_enveloped; PKCS7_DIGEST *digest; PKCS7_ENCRYPT *encrypted; ASN1_TYPE *other; } d; } PKCS7; struct stack_st_PKCS7 { _STACK stack; }; #define PKCS7_OP_SET_DETACHED_SIGNATURE 1 #define PKCS7_OP_GET_DETACHED_SIGNATURE 2 #define PKCS7_get_signed_attributes(si) ((si)->auth_attr) #define PKCS7_get_attributes(si) ((si)->unauth_attr) #define PKCS7_type_is_signed(a) (OBJ_obj2nid((a)->type) == NID_pkcs7_signed) #define PKCS7_type_is_encrypted(a) (OBJ_obj2nid((a)->type) == NID_pkcs7_encrypted) #define PKCS7_type_is_enveloped(a) (OBJ_obj2nid((a)->type) == NID_pkcs7_enveloped) #define PKCS7_type_is_signedAndEnveloped(a) (OBJ_obj2nid((a)->type) == NID_pkcs7_signedAndEnveloped) #define PKCS7_type_is_data(a) (OBJ_obj2nid((a)->type) == NID_pkcs7_data) #define PKCS7_type_is_digest(a) (OBJ_obj2nid((a)->type) == NID_pkcs7_digest) #define PKCS7_type_is_encrypted(a) (OBJ_obj2nid((a)->type) == NID_pkcs7_encrypted) #define PKCS7_type_is_digest(a) (OBJ_obj2nid((a)->type) == NID_pkcs7_digest) #define PKCS7_set_detached(p,v) PKCS7_ctrl(p,PKCS7_OP_SET_DETACHED_SIGNATURE,v,NULL) #define PKCS7_get_detached(p) PKCS7_ctrl(p,PKCS7_OP_GET_DETACHED_SIGNATURE,0,NULL) #define PKCS7_is_detached(p7) (PKCS7_type_is_signed(p7) && PKCS7_get_detached(p7)) #define PKCS7_TEXT 0x1 #define PKCS7_NOCERTS 0x2 #define PKCS7_NOSIGS 0x4 #define PKCS7_NOCHAIN 0x8 #define PKCS7_NOINTERN 0x10 #define PKCS7_NOVERIFY 0x20 #define PKCS7_DETACHED 0x40 #define PKCS7_BINARY 0x80 #define PKCS7_NOATTR 0x100 #define PKCS7_NOSMIMECAP 0x200 #define PKCS7_NOOLDMIMETYPE 0x400 #define PKCS7_CRLFEOL 0x800 #define PKCS7_STREAM 0x1000 #define PKCS7_NOCRL 0x2000 #define PKCS7_PARTIAL 0x4000 #define PKCS7_REUSE_DIGEST 0x8000 #define SMIME_TEXT PKCS7_TEXT #define SMIME_NOCERTS PKCS7_NOCERTS #define SMIME_NOSIGS PKCS7_NOSIGS #define SMIME_NOCHAIN PKCS7_NOCHAIN #define SMIME_NOINTERN PKCS7_NOINTERN #define SMIME_NOVERIFY PKCS7_NOVERIFY #define SMIME_DETACHED PKCS7_DETACHED #define SMIME_BINARY PKCS7_BINARY #define SMIME_NOATTR PKCS7_NOATTR PKCS7_ISSUER_AND_SERIAL *PKCS7_ISSUER_AND_SERIAL_new(void); void PKCS7_ISSUER_AND_SERIAL_free(PKCS7_ISSUER_AND_SERIAL *a); PKCS7_ISSUER_AND_SERIAL *d2i_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL **a, const unsigned char **in, long len); int i2d_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ISSUER_AND_SERIAL_it; int PKCS7_ISSUER_AND_SERIAL_digest(PKCS7_ISSUER_AND_SERIAL *data,const EVP_MD *type, unsigned char *md,unsigned int *len); PKCS7 *d2i_PKCS7_fp(FILE *fp,PKCS7 **p7); int i2d_PKCS7_fp(FILE *fp,PKCS7 *p7); PKCS7 *PKCS7_dup(PKCS7 *p7); PKCS7 *d2i_PKCS7_bio(BIO *bp,PKCS7 **p7); int i2d_PKCS7_bio(BIO *bp,PKCS7 *p7); int i2d_PKCS7_bio_stream(BIO *out, PKCS7 *p7, BIO *in, int flags); int PEM_write_bio_PKCS7_stream(BIO *out, PKCS7 *p7, BIO *in, int flags); PKCS7_SIGNER_INFO *PKCS7_SIGNER_INFO_new(void); void PKCS7_SIGNER_INFO_free(PKCS7_SIGNER_INFO *a); PKCS7_SIGNER_INFO *d2i_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO **a, const unsigned char **in, long len); int i2d_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGNER_INFO_it; PKCS7_RECIP_INFO *PKCS7_RECIP_INFO_new(void); void PKCS7_RECIP_INFO_free(PKCS7_RECIP_INFO *a); PKCS7_RECIP_INFO *d2i_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO **a, const unsigned char **in, long len); int i2d_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS7_RECIP_INFO_it; PKCS7_SIGNED *PKCS7_SIGNED_new(void); void PKCS7_SIGNED_free(PKCS7_SIGNED *a); PKCS7_SIGNED *d2i_PKCS7_SIGNED(PKCS7_SIGNED **a, const unsigned char **in, long len); int i2d_PKCS7_SIGNED(PKCS7_SIGNED *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGNED_it; PKCS7_ENC_CONTENT *PKCS7_ENC_CONTENT_new(void); void PKCS7_ENC_CONTENT_free(PKCS7_ENC_CONTENT *a); PKCS7_ENC_CONTENT *d2i_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT **a, const unsigned char **in, long len); int i2d_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENC_CONTENT_it; PKCS7_ENVELOPE *PKCS7_ENVELOPE_new(void); void PKCS7_ENVELOPE_free(PKCS7_ENVELOPE *a); PKCS7_ENVELOPE *d2i_PKCS7_ENVELOPE(PKCS7_ENVELOPE **a, const unsigned char **in, long len); int i2d_PKCS7_ENVELOPE(PKCS7_ENVELOPE *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENVELOPE_it; PKCS7_SIGN_ENVELOPE *PKCS7_SIGN_ENVELOPE_new(void); void PKCS7_SIGN_ENVELOPE_free(PKCS7_SIGN_ENVELOPE *a); PKCS7_SIGN_ENVELOPE *d2i_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE **a, const unsigned char **in, long len); int i2d_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGN_ENVELOPE_it; PKCS7_DIGEST *PKCS7_DIGEST_new(void); void PKCS7_DIGEST_free(PKCS7_DIGEST *a); PKCS7_DIGEST *d2i_PKCS7_DIGEST(PKCS7_DIGEST **a, const unsigned char **in, long len); int i2d_PKCS7_DIGEST(PKCS7_DIGEST *a, unsigned char **out); extern const ASN1_ITEM PKCS7_DIGEST_it; PKCS7_ENCRYPT *PKCS7_ENCRYPT_new(void); void PKCS7_ENCRYPT_free(PKCS7_ENCRYPT *a); PKCS7_ENCRYPT *d2i_PKCS7_ENCRYPT(PKCS7_ENCRYPT **a, const unsigned char **in, long len); int i2d_PKCS7_ENCRYPT(PKCS7_ENCRYPT *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENCRYPT_it; PKCS7 *PKCS7_new(void); void PKCS7_free(PKCS7 *a); PKCS7 *d2i_PKCS7(PKCS7 **a, const unsigned char **in, long len); int i2d_PKCS7(PKCS7 *a, unsigned char **out); extern const ASN1_ITEM PKCS7_it; extern const ASN1_ITEM PKCS7_ATTR_SIGN_it; extern const ASN1_ITEM PKCS7_ATTR_VERIFY_it; int i2d_PKCS7_NDEF(PKCS7 *a, unsigned char **out); int PKCS7_print_ctx(BIO *out, PKCS7 *x, int indent, const ASN1_PCTX *pctx); long PKCS7_ctrl(PKCS7 *p7, int cmd, long larg, char *parg); int PKCS7_set_type(PKCS7 *p7, int type); int PKCS7_set0_type_other(PKCS7 *p7, int type, ASN1_TYPE *other); int PKCS7_set_content(PKCS7 *p7, PKCS7 *p7_data); int PKCS7_SIGNER_INFO_set(PKCS7_SIGNER_INFO *p7i, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst); int PKCS7_SIGNER_INFO_sign(PKCS7_SIGNER_INFO *si); int PKCS7_add_signer(PKCS7 *p7, PKCS7_SIGNER_INFO *p7i); int PKCS7_add_certificate(PKCS7 *p7, X509 *x509); int PKCS7_add_crl(PKCS7 *p7, X509_CRL *x509); int PKCS7_content_new(PKCS7 *p7, int nid); int PKCS7_dataVerify(X509_STORE *cert_store, X509_STORE_CTX *ctx, BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si); int PKCS7_signatureVerify(BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si, X509 *x509); BIO *PKCS7_dataInit(PKCS7 *p7, BIO *bio); int PKCS7_dataFinal(PKCS7 *p7, BIO *bio); BIO *PKCS7_dataDecode(PKCS7 *p7, EVP_PKEY *pkey, BIO *in_bio, X509 *pcert); PKCS7_SIGNER_INFO *PKCS7_add_signature(PKCS7 *p7, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst); X509 *PKCS7_cert_from_signer_info(PKCS7 *p7, PKCS7_SIGNER_INFO *si); int PKCS7_set_digest(PKCS7 *p7, const EVP_MD *md); struct stack_st_PKCS7_SIGNER_INFO *PKCS7_get_signer_info(PKCS7 *p7); PKCS7_RECIP_INFO *PKCS7_add_recipient(PKCS7 *p7, X509 *x509); void PKCS7_SIGNER_INFO_get0_algs(PKCS7_SIGNER_INFO *si, EVP_PKEY **pk, X509_ALGOR **pdig, X509_ALGOR **psig); void PKCS7_RECIP_INFO_get0_alg(PKCS7_RECIP_INFO *ri, X509_ALGOR **penc); int PKCS7_add_recipient_info(PKCS7 *p7, PKCS7_RECIP_INFO *ri); int PKCS7_RECIP_INFO_set(PKCS7_RECIP_INFO *p7i, X509 *x509); int PKCS7_set_cipher(PKCS7 *p7, const EVP_CIPHER *cipher); int PKCS7_stream(unsigned char ***boundary, PKCS7 *p7); PKCS7_ISSUER_AND_SERIAL *PKCS7_get_issuer_and_serial(PKCS7 *p7, int idx); ASN1_OCTET_STRING *PKCS7_digest_from_attributes(struct stack_st_X509_ATTRIBUTE *sk); int PKCS7_add_signed_attribute(PKCS7_SIGNER_INFO *p7si,int nid,int type, void *data); int PKCS7_add_attribute (PKCS7_SIGNER_INFO *p7si, int nid, int atrtype, void *value); ASN1_TYPE *PKCS7_get_attribute(PKCS7_SIGNER_INFO *si, int nid); ASN1_TYPE *PKCS7_get_signed_attribute(PKCS7_SIGNER_INFO *si, int nid); int PKCS7_set_signed_attributes(PKCS7_SIGNER_INFO *p7si, struct stack_st_X509_ATTRIBUTE *sk); int PKCS7_set_attributes(PKCS7_SIGNER_INFO *p7si,struct stack_st_X509_ATTRIBUTE *sk); PKCS7 *PKCS7_sign(X509 *signcert, EVP_PKEY *pkey, struct stack_st_X509 *certs, BIO *data, int flags); PKCS7_SIGNER_INFO *PKCS7_sign_add_signer(PKCS7 *p7, X509 *signcert, EVP_PKEY *pkey, const EVP_MD *md, int flags); int PKCS7_final(PKCS7 *p7, BIO *data, int flags); int PKCS7_verify(PKCS7 *p7, struct stack_st_X509 *certs, X509_STORE *store, BIO *indata, BIO *out, int flags); struct stack_st_X509 *PKCS7_get0_signers(PKCS7 *p7, struct stack_st_X509 *certs, int flags); PKCS7 *PKCS7_encrypt(struct stack_st_X509 *certs, BIO *in, const EVP_CIPHER *cipher, int flags); int PKCS7_decrypt(PKCS7 *p7, EVP_PKEY *pkey, X509 *cert, BIO *data, int flags); int PKCS7_add_attrib_smimecap(PKCS7_SIGNER_INFO *si, struct stack_st_X509_ALGOR *cap); struct stack_st_X509_ALGOR *PKCS7_get_smimecap(PKCS7_SIGNER_INFO *si); int PKCS7_simple_smimecap(struct stack_st_X509_ALGOR *sk, int nid, int arg); int PKCS7_add_attrib_content_type(PKCS7_SIGNER_INFO *si, ASN1_OBJECT *coid); int PKCS7_add0_attrib_signing_time(PKCS7_SIGNER_INFO *si, ASN1_TIME *t); int PKCS7_add1_attrib_digest(PKCS7_SIGNER_INFO *si, const unsigned char *md, int mdlen); int SMIME_write_PKCS7(BIO *bio, PKCS7 *p7, BIO *data, int flags); PKCS7 *SMIME_read_PKCS7(BIO *bio, BIO **bcont); BIO *BIO_new_PKCS7(BIO *out, PKCS7 *p7); void ERR_load_PKCS7_strings(void); #define PKCS7_F_B64_READ_PKCS7 120 #define PKCS7_F_B64_WRITE_PKCS7 121 #define PKCS7_F_DO_PKCS7_SIGNED_ATTRIB 136 #define PKCS7_F_I2D_PKCS7_BIO_STREAM 140 #define PKCS7_F_PKCS7_ADD0_ATTRIB_SIGNING_TIME 135 #define PKCS7_F_PKCS7_ADD_ATTRIB_SMIMECAP 118 #define PKCS7_F_PKCS7_ADD_CERTIFICATE 100 #define PKCS7_F_PKCS7_ADD_CRL 101 #define PKCS7_F_PKCS7_ADD_RECIPIENT_INFO 102 #define PKCS7_F_PKCS7_ADD_SIGNATURE 131 #define PKCS7_F_PKCS7_ADD_SIGNER 103 #define PKCS7_F_PKCS7_BIO_ADD_DIGEST 125 #define PKCS7_F_PKCS7_COPY_EXISTING_DIGEST 138 #define PKCS7_F_PKCS7_CTRL 104 #define PKCS7_F_PKCS7_DATADECODE 112 #define PKCS7_F_PKCS7_DATAFINAL 128 #define PKCS7_F_PKCS7_DATAINIT 105 #define PKCS7_F_PKCS7_DATASIGN 106 #define PKCS7_F_PKCS7_DATAVERIFY 107 #define PKCS7_F_PKCS7_DECRYPT 114 #define PKCS7_F_PKCS7_DECRYPT_RINFO 133 #define PKCS7_F_PKCS7_ENCODE_RINFO 132 #define PKCS7_F_PKCS7_ENCRYPT 115 #define PKCS7_F_PKCS7_FINAL 134 #define PKCS7_F_PKCS7_FIND_DIGEST 127 #define PKCS7_F_PKCS7_GET0_SIGNERS 124 #define PKCS7_F_PKCS7_RECIP_INFO_SET 130 #define PKCS7_F_PKCS7_SET_CIPHER 108 #define PKCS7_F_PKCS7_SET_CONTENT 109 #define PKCS7_F_PKCS7_SET_DIGEST 126 #define PKCS7_F_PKCS7_SET_TYPE 110 #define PKCS7_F_PKCS7_SIGN 116 #define PKCS7_F_PKCS7_SIGNATUREVERIFY 113 #define PKCS7_F_PKCS7_SIGNER_INFO_SET 129 #define PKCS7_F_PKCS7_SIGNER_INFO_SIGN 139 #define PKCS7_F_PKCS7_SIGN_ADD_SIGNER 137 #define PKCS7_F_PKCS7_SIMPLE_SMIMECAP 119 #define PKCS7_F_PKCS7_VERIFY 117 #define PKCS7_F_SMIME_READ_PKCS7 122 #define PKCS7_F_SMIME_TEXT 123 #define PKCS7_R_CERTIFICATE_VERIFY_ERROR 117 #define PKCS7_R_CIPHER_HAS_NO_OBJECT_IDENTIFIER 144 #define PKCS7_R_CIPHER_NOT_INITIALIZED 116 #define PKCS7_R_CONTENT_AND_DATA_PRESENT 118 #define PKCS7_R_CTRL_ERROR 152 #define PKCS7_R_DECODE_ERROR 130 #define PKCS7_R_DECRYPTED_KEY_IS_WRONG_LENGTH 100 #define PKCS7_R_DECRYPT_ERROR 119 #define PKCS7_R_DIGEST_FAILURE 101 #define PKCS7_R_ENCRYPTION_CTRL_FAILURE 149 #define PKCS7_R_ENCRYPTION_NOT_SUPPORTED_FOR_THIS_KEY_TYPE 150 #define PKCS7_R_ERROR_ADDING_RECIPIENT 120 #define PKCS7_R_ERROR_SETTING_CIPHER 121 #define PKCS7_R_INVALID_MIME_TYPE 131 #define PKCS7_R_INVALID_NULL_POINTER 143 #define PKCS7_R_MIME_NO_CONTENT_TYPE 132 #define PKCS7_R_MIME_PARSE_ERROR 133 #define PKCS7_R_MIME_SIG_PARSE_ERROR 134 #define PKCS7_R_MISSING_CERIPEND_INFO 103 #define PKCS7_R_NO_CONTENT 122 #define PKCS7_R_NO_CONTENT_TYPE 135 #define PKCS7_R_NO_DEFAULT_DIGEST 151 #define PKCS7_R_NO_MATCHING_DIGEST_TYPE_FOUND 154 #define PKCS7_R_NO_MULTIPART_BODY_FAILURE 136 #define PKCS7_R_NO_MULTIPART_BOUNDARY 137 #define PKCS7_R_NO_RECIPIENT_MATCHES_CERTIFICATE 115 #define PKCS7_R_NO_RECIPIENT_MATCHES_KEY 146 #define PKCS7_R_NO_SIGNATURES_ON_DATA 123 #define PKCS7_R_NO_SIGNERS 142 #define PKCS7_R_NO_SIG_CONTENT_TYPE 138 #define PKCS7_R_OPERATION_NOT_SUPPORTED_ON_THIS_TYPE 104 #define PKCS7_R_PKCS7_ADD_SIGNATURE_ERROR 124 #define PKCS7_R_PKCS7_ADD_SIGNER_ERROR 153 #define PKCS7_R_PKCS7_DATAFINAL 126 #define PKCS7_R_PKCS7_DATAFINAL_ERROR 125 #define PKCS7_R_PKCS7_DATASIGN 145 #define PKCS7_R_PKCS7_PARSE_ERROR 139 #define PKCS7_R_PKCS7_SIG_PARSE_ERROR 140 #define PKCS7_R_PRIVATE_KEY_DOES_NOT_MATCH_CERTIFICATE 127 #define PKCS7_R_SIGNATURE_FAILURE 105 #define PKCS7_R_SIGNER_CERTIFICATE_NOT_FOUND 128 #define PKCS7_R_SIGNING_CTRL_FAILURE 147 #define PKCS7_R_SIGNING_NOT_SUPPORTED_FOR_THIS_KEY_TYPE 148 #define PKCS7_R_SIG_INVALID_MIME_TYPE 141 #define PKCS7_R_SMIME_TEXT_ERROR 129 #define PKCS7_R_UNABLE_TO_FIND_CERTIFICATE 106 #define PKCS7_R_UNABLE_TO_FIND_MEM_BIO 107 #define PKCS7_R_UNABLE_TO_FIND_MESSAGE_DIGEST 108 #define PKCS7_R_UNKNOWN_DIGEST_TYPE 109 #define PKCS7_R_UNKNOWN_OPERATION 110 #define PKCS7_R_UNSUPPORTED_CIPHER_TYPE 111 #define PKCS7_R_UNSUPPORTED_CONTENT_TYPE 112 #define PKCS7_R_WRONG_CONTENT_TYPE 113 #define PKCS7_R_WRONG_PKCS7_TYPE 114 # 602 "/usr/include/openssl/x509.h" 2 3 4 #define X509_EXT_PACK_UNKNOWN 1 #define X509_EXT_PACK_STRING 2 #define X509_get_version(x) ASN1_INTEGER_get((x)->cert_info->version) #define X509_get_notBefore(x) ((x)->cert_info->validity->notBefore) #define X509_get_notAfter(x) ((x)->cert_info->validity->notAfter) #define X509_extract_key(x) X509_get_pubkey(x) #define X509_REQ_get_version(x) ASN1_INTEGER_get((x)->req_info->version) #define X509_REQ_get_subject_name(x) ((x)->req_info->subject) #define X509_REQ_extract_key(a) X509_REQ_get_pubkey(a) #define X509_name_cmp(a,b) X509_NAME_cmp((a),(b)) #define X509_get_signature_type(x) EVP_PKEY_type(OBJ_obj2nid((x)->sig_alg->algorithm)) #define X509_CRL_get_version(x) ASN1_INTEGER_get((x)->crl->version) #define X509_CRL_get_lastUpdate(x) ((x)->crl->lastUpdate) #define X509_CRL_get_nextUpdate(x) ((x)->crl->nextUpdate) #define X509_CRL_get_issuer(x) ((x)->crl->issuer) #define X509_CRL_get_REVOKED(x) ((x)->crl->revoked) void X509_CRL_set_default_method(const X509_CRL_METHOD *meth); X509_CRL_METHOD *X509_CRL_METHOD_new( int (*crl_init)(X509_CRL *crl), int (*crl_free)(X509_CRL *crl), int (*crl_lookup)(X509_CRL *crl, X509_REVOKED **ret, ASN1_INTEGER *ser, X509_NAME *issuer), int (*crl_verify)(X509_CRL *crl, EVP_PKEY *pk)); void X509_CRL_METHOD_free(X509_CRL_METHOD *m); void X509_CRL_set_meth_data(X509_CRL *crl, void *dat); void *X509_CRL_get_meth_data(X509_CRL *crl); #define X509_get_X509_PUBKEY(x) ((x)->cert_info->key) const char *X509_verify_cert_error_string(long n); int X509_verify(X509 *a, EVP_PKEY *r); int X509_REQ_verify(X509_REQ *a, EVP_PKEY *r); int X509_CRL_verify(X509_CRL *a, EVP_PKEY *r); int NETSCAPE_SPKI_verify(NETSCAPE_SPKI *a, EVP_PKEY *r); NETSCAPE_SPKI * NETSCAPE_SPKI_b64_decode(const char *str, int len); char * NETSCAPE_SPKI_b64_encode(NETSCAPE_SPKI *x); EVP_PKEY *NETSCAPE_SPKI_get_pubkey(NETSCAPE_SPKI *x); int NETSCAPE_SPKI_set_pubkey(NETSCAPE_SPKI *x, EVP_PKEY *pkey); int NETSCAPE_SPKI_print(BIO *out, NETSCAPE_SPKI *spki); int X509_signature_dump(BIO *bp,const ASN1_STRING *sig, int indent); int X509_signature_print(BIO *bp,X509_ALGOR *alg, ASN1_STRING *sig); int X509_sign(X509 *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_sign_ctx(X509 *x, EVP_MD_CTX *ctx); int X509_REQ_sign(X509_REQ *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_REQ_sign_ctx(X509_REQ *x, EVP_MD_CTX *ctx); int X509_CRL_sign(X509_CRL *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_CRL_sign_ctx(X509_CRL *x, EVP_MD_CTX *ctx); int NETSCAPE_SPKI_sign(NETSCAPE_SPKI *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_pubkey_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_CRL_digest(const X509_CRL *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_REQ_digest(const X509_REQ *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_NAME_digest(const X509_NAME *data,const EVP_MD *type, unsigned char *md, unsigned int *len); X509 *d2i_X509_fp(FILE *fp, X509 **x509); int i2d_X509_fp(FILE *fp,X509 *x509); X509_CRL *d2i_X509_CRL_fp(FILE *fp,X509_CRL **crl); int i2d_X509_CRL_fp(FILE *fp,X509_CRL *crl); X509_REQ *d2i_X509_REQ_fp(FILE *fp,X509_REQ **req); int i2d_X509_REQ_fp(FILE *fp,X509_REQ *req); RSA *d2i_RSAPrivateKey_fp(FILE *fp,RSA **rsa); int i2d_RSAPrivateKey_fp(FILE *fp,RSA *rsa); RSA *d2i_RSAPublicKey_fp(FILE *fp,RSA **rsa); int i2d_RSAPublicKey_fp(FILE *fp,RSA *rsa); RSA *d2i_RSA_PUBKEY_fp(FILE *fp,RSA **rsa); int i2d_RSA_PUBKEY_fp(FILE *fp,RSA *rsa); DSA *d2i_DSA_PUBKEY_fp(FILE *fp, DSA **dsa); int i2d_DSA_PUBKEY_fp(FILE *fp, DSA *dsa); DSA *d2i_DSAPrivateKey_fp(FILE *fp, DSA **dsa); int i2d_DSAPrivateKey_fp(FILE *fp, DSA *dsa); EC_KEY *d2i_EC_PUBKEY_fp(FILE *fp, EC_KEY **eckey); int i2d_EC_PUBKEY_fp(FILE *fp, EC_KEY *eckey); EC_KEY *d2i_ECPrivateKey_fp(FILE *fp, EC_KEY **eckey); int i2d_ECPrivateKey_fp(FILE *fp, EC_KEY *eckey); X509_SIG *d2i_PKCS8_fp(FILE *fp,X509_SIG **p8); int i2d_PKCS8_fp(FILE *fp,X509_SIG *p8); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_fp(FILE *fp, PKCS8_PRIV_KEY_INFO **p8inf); int i2d_PKCS8_PRIV_KEY_INFO_fp(FILE *fp,PKCS8_PRIV_KEY_INFO *p8inf); int i2d_PKCS8PrivateKeyInfo_fp(FILE *fp, EVP_PKEY *key); int i2d_PrivateKey_fp(FILE *fp, EVP_PKEY *pkey); EVP_PKEY *d2i_PrivateKey_fp(FILE *fp, EVP_PKEY **a); int i2d_PUBKEY_fp(FILE *fp, EVP_PKEY *pkey); EVP_PKEY *d2i_PUBKEY_fp(FILE *fp, EVP_PKEY **a); X509 *d2i_X509_bio(BIO *bp,X509 **x509); int i2d_X509_bio(BIO *bp,X509 *x509); X509_CRL *d2i_X509_CRL_bio(BIO *bp,X509_CRL **crl); int i2d_X509_CRL_bio(BIO *bp,X509_CRL *crl); X509_REQ *d2i_X509_REQ_bio(BIO *bp,X509_REQ **req); int i2d_X509_REQ_bio(BIO *bp,X509_REQ *req); RSA *d2i_RSAPrivateKey_bio(BIO *bp,RSA **rsa); int i2d_RSAPrivateKey_bio(BIO *bp,RSA *rsa); RSA *d2i_RSAPublicKey_bio(BIO *bp,RSA **rsa); int i2d_RSAPublicKey_bio(BIO *bp,RSA *rsa); RSA *d2i_RSA_PUBKEY_bio(BIO *bp,RSA **rsa); int i2d_RSA_PUBKEY_bio(BIO *bp,RSA *rsa); DSA *d2i_DSA_PUBKEY_bio(BIO *bp, DSA **dsa); int i2d_DSA_PUBKEY_bio(BIO *bp, DSA *dsa); DSA *d2i_DSAPrivateKey_bio(BIO *bp, DSA **dsa); int i2d_DSAPrivateKey_bio(BIO *bp, DSA *dsa); EC_KEY *d2i_EC_PUBKEY_bio(BIO *bp, EC_KEY **eckey); int i2d_EC_PUBKEY_bio(BIO *bp, EC_KEY *eckey); EC_KEY *d2i_ECPrivateKey_bio(BIO *bp, EC_KEY **eckey); int i2d_ECPrivateKey_bio(BIO *bp, EC_KEY *eckey); X509_SIG *d2i_PKCS8_bio(BIO *bp,X509_SIG **p8); int i2d_PKCS8_bio(BIO *bp,X509_SIG *p8); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_bio(BIO *bp, PKCS8_PRIV_KEY_INFO **p8inf); int i2d_PKCS8_PRIV_KEY_INFO_bio(BIO *bp,PKCS8_PRIV_KEY_INFO *p8inf); int i2d_PKCS8PrivateKeyInfo_bio(BIO *bp, EVP_PKEY *key); int i2d_PrivateKey_bio(BIO *bp, EVP_PKEY *pkey); EVP_PKEY *d2i_PrivateKey_bio(BIO *bp, EVP_PKEY **a); int i2d_PUBKEY_bio(BIO *bp, EVP_PKEY *pkey); EVP_PKEY *d2i_PUBKEY_bio(BIO *bp, EVP_PKEY **a); X509 *X509_dup(X509 *x509); X509_ATTRIBUTE *X509_ATTRIBUTE_dup(X509_ATTRIBUTE *xa); X509_EXTENSION *X509_EXTENSION_dup(X509_EXTENSION *ex); X509_CRL *X509_CRL_dup(X509_CRL *crl); X509_REQ *X509_REQ_dup(X509_REQ *req); X509_ALGOR *X509_ALGOR_dup(X509_ALGOR *xn); int X509_ALGOR_set0(X509_ALGOR *alg, ASN1_OBJECT *aobj, int ptype, void *pval); void X509_ALGOR_get0(ASN1_OBJECT **paobj, int *pptype, void **ppval, X509_ALGOR *algor); void X509_ALGOR_set_md(X509_ALGOR *alg, const EVP_MD *md); int X509_ALGOR_cmp(const X509_ALGOR *a, const X509_ALGOR *b); X509_NAME *X509_NAME_dup(X509_NAME *xn); X509_NAME_ENTRY *X509_NAME_ENTRY_dup(X509_NAME_ENTRY *ne); int X509_cmp_time(const ASN1_TIME *s, time_t *t); int X509_cmp_current_time(const ASN1_TIME *s); ASN1_TIME * X509_time_adj(ASN1_TIME *s, long adj, time_t *t); ASN1_TIME * X509_time_adj_ex(ASN1_TIME *s, int offset_day, long offset_sec, time_t *t); ASN1_TIME * X509_gmtime_adj(ASN1_TIME *s, long adj); const char * X509_get_default_cert_area(void ); const char * X509_get_default_cert_dir(void ); const char * X509_get_default_cert_file(void ); const char * X509_get_default_cert_dir_env(void ); const char * X509_get_default_cert_file_env(void ); const char * X509_get_default_private_dir(void ); X509_REQ * X509_to_X509_REQ(X509 *x, EVP_PKEY *pkey, const EVP_MD *md); X509 * X509_REQ_to_X509(X509_REQ *r, int days,EVP_PKEY *pkey); X509_ALGOR *X509_ALGOR_new(void); void X509_ALGOR_free(X509_ALGOR *a); X509_ALGOR *d2i_X509_ALGOR(X509_ALGOR **a, const unsigned char **in, long len); int i2d_X509_ALGOR(X509_ALGOR *a, unsigned char **out); extern const ASN1_ITEM X509_ALGOR_it; X509_ALGORS *d2i_X509_ALGORS(X509_ALGORS **a, const unsigned char **in, long len); int i2d_X509_ALGORS(X509_ALGORS *a, unsigned char **out); extern const ASN1_ITEM X509_ALGORS_it; X509_VAL *X509_VAL_new(void); void X509_VAL_free(X509_VAL *a); X509_VAL *d2i_X509_VAL(X509_VAL **a, const unsigned char **in, long len); int i2d_X509_VAL(X509_VAL *a, unsigned char **out); extern const ASN1_ITEM X509_VAL_it; X509_PUBKEY *X509_PUBKEY_new(void); void X509_PUBKEY_free(X509_PUBKEY *a); X509_PUBKEY *d2i_X509_PUBKEY(X509_PUBKEY **a, const unsigned char **in, long len); int i2d_X509_PUBKEY(X509_PUBKEY *a, unsigned char **out); extern const ASN1_ITEM X509_PUBKEY_it; int X509_PUBKEY_set(X509_PUBKEY **x, EVP_PKEY *pkey); EVP_PKEY * X509_PUBKEY_get(X509_PUBKEY *key); int X509_get_pubkey_parameters(EVP_PKEY *pkey, struct stack_st_X509 *chain); int i2d_PUBKEY(EVP_PKEY *a,unsigned char **pp); EVP_PKEY * d2i_PUBKEY(EVP_PKEY **a,const unsigned char **pp, long length); int i2d_RSA_PUBKEY(RSA *a,unsigned char **pp); RSA * d2i_RSA_PUBKEY(RSA **a,const unsigned char **pp, long length); int i2d_DSA_PUBKEY(DSA *a,unsigned char **pp); DSA * d2i_DSA_PUBKEY(DSA **a,const unsigned char **pp, long length); int i2d_EC_PUBKEY(EC_KEY *a, unsigned char **pp); EC_KEY *d2i_EC_PUBKEY(EC_KEY **a, const unsigned char **pp, long length); X509_SIG *X509_SIG_new(void); void X509_SIG_free(X509_SIG *a); X509_SIG *d2i_X509_SIG(X509_SIG **a, const unsigned char **in, long len); int i2d_X509_SIG(X509_SIG *a, unsigned char **out); extern const ASN1_ITEM X509_SIG_it; X509_REQ_INFO *X509_REQ_INFO_new(void); void X509_REQ_INFO_free(X509_REQ_INFO *a); X509_REQ_INFO *d2i_X509_REQ_INFO(X509_REQ_INFO **a, const unsigned char **in, long len); int i2d_X509_REQ_INFO(X509_REQ_INFO *a, unsigned char **out); extern const ASN1_ITEM X509_REQ_INFO_it; X509_REQ *X509_REQ_new(void); void X509_REQ_free(X509_REQ *a); X509_REQ *d2i_X509_REQ(X509_REQ **a, const unsigned char **in, long len); int i2d_X509_REQ(X509_REQ *a, unsigned char **out); extern const ASN1_ITEM X509_REQ_it; X509_ATTRIBUTE *X509_ATTRIBUTE_new(void); void X509_ATTRIBUTE_free(X509_ATTRIBUTE *a); X509_ATTRIBUTE *d2i_X509_ATTRIBUTE(X509_ATTRIBUTE **a, const unsigned char **in, long len); int i2d_X509_ATTRIBUTE(X509_ATTRIBUTE *a, unsigned char **out); extern const ASN1_ITEM X509_ATTRIBUTE_it; X509_ATTRIBUTE *X509_ATTRIBUTE_create(int nid, int atrtype, void *value); X509_EXTENSION *X509_EXTENSION_new(void); void X509_EXTENSION_free(X509_EXTENSION *a); X509_EXTENSION *d2i_X509_EXTENSION(X509_EXTENSION **a, const unsigned char **in, long len); int i2d_X509_EXTENSION(X509_EXTENSION *a, unsigned char **out); extern const ASN1_ITEM X509_EXTENSION_it; X509_EXTENSIONS *d2i_X509_EXTENSIONS(X509_EXTENSIONS **a, const unsigned char **in, long len); int i2d_X509_EXTENSIONS(X509_EXTENSIONS *a, unsigned char **out); extern const ASN1_ITEM X509_EXTENSIONS_it; X509_NAME_ENTRY *X509_NAME_ENTRY_new(void); void X509_NAME_ENTRY_free(X509_NAME_ENTRY *a); X509_NAME_ENTRY *d2i_X509_NAME_ENTRY(X509_NAME_ENTRY **a, const unsigned char **in, long len); int i2d_X509_NAME_ENTRY(X509_NAME_ENTRY *a, unsigned char **out); extern const ASN1_ITEM X509_NAME_ENTRY_it; X509_NAME *X509_NAME_new(void); void X509_NAME_free(X509_NAME *a); X509_NAME *d2i_X509_NAME(X509_NAME **a, const unsigned char **in, long len); int i2d_X509_NAME(X509_NAME *a, unsigned char **out); extern const ASN1_ITEM X509_NAME_it; int X509_NAME_set(X509_NAME **xn, X509_NAME *name); X509_CINF *X509_CINF_new(void); void X509_CINF_free(X509_CINF *a); X509_CINF *d2i_X509_CINF(X509_CINF **a, const unsigned char **in, long len); int i2d_X509_CINF(X509_CINF *a, unsigned char **out); extern const ASN1_ITEM X509_CINF_it; X509 *X509_new(void); void X509_free(X509 *a); X509 *d2i_X509(X509 **a, const unsigned char **in, long len); int i2d_X509(X509 *a, unsigned char **out); extern const ASN1_ITEM X509_it; X509_CERT_AUX *X509_CERT_AUX_new(void); void X509_CERT_AUX_free(X509_CERT_AUX *a); X509_CERT_AUX *d2i_X509_CERT_AUX(X509_CERT_AUX **a, const unsigned char **in, long len); int i2d_X509_CERT_AUX(X509_CERT_AUX *a, unsigned char **out); extern const ASN1_ITEM X509_CERT_AUX_it; X509_CERT_PAIR *X509_CERT_PAIR_new(void); void X509_CERT_PAIR_free(X509_CERT_PAIR *a); X509_CERT_PAIR *d2i_X509_CERT_PAIR(X509_CERT_PAIR **a, const unsigned char **in, long len); int i2d_X509_CERT_PAIR(X509_CERT_PAIR *a, unsigned char **out); extern const ASN1_ITEM X509_CERT_PAIR_it; int X509_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int X509_set_ex_data(X509 *r, int idx, void *arg); void *X509_get_ex_data(X509 *r, int idx); int i2d_X509_AUX(X509 *a,unsigned char **pp); X509 * d2i_X509_AUX(X509 **a,const unsigned char **pp,long length); int X509_alias_set1(X509 *x, unsigned char *name, int len); int X509_keyid_set1(X509 *x, unsigned char *id, int len); unsigned char * X509_alias_get0(X509 *x, int *len); unsigned char * X509_keyid_get0(X509 *x, int *len); int (*X509_TRUST_set_default(int (*trust)(int , X509 *, int)))(int, X509 *, int); int X509_TRUST_set(int *t, int trust); int X509_add1_trust_object(X509 *x, ASN1_OBJECT *obj); int X509_add1_reject_object(X509 *x, ASN1_OBJECT *obj); void X509_trust_clear(X509 *x); void X509_reject_clear(X509 *x); X509_REVOKED *X509_REVOKED_new(void); void X509_REVOKED_free(X509_REVOKED *a); X509_REVOKED *d2i_X509_REVOKED(X509_REVOKED **a, const unsigned char **in, long len); int i2d_X509_REVOKED(X509_REVOKED *a, unsigned char **out); extern const ASN1_ITEM X509_REVOKED_it; X509_CRL_INFO *X509_CRL_INFO_new(void); void X509_CRL_INFO_free(X509_CRL_INFO *a); X509_CRL_INFO *d2i_X509_CRL_INFO(X509_CRL_INFO **a, const unsigned char **in, long len); int i2d_X509_CRL_INFO(X509_CRL_INFO *a, unsigned char **out); extern const ASN1_ITEM X509_CRL_INFO_it; X509_CRL *X509_CRL_new(void); void X509_CRL_free(X509_CRL *a); X509_CRL *d2i_X509_CRL(X509_CRL **a, const unsigned char **in, long len); int i2d_X509_CRL(X509_CRL *a, unsigned char **out); extern const ASN1_ITEM X509_CRL_it; int X509_CRL_add0_revoked(X509_CRL *crl, X509_REVOKED *rev); int X509_CRL_get0_by_serial(X509_CRL *crl, X509_REVOKED **ret, ASN1_INTEGER *serial); int X509_CRL_get0_by_cert(X509_CRL *crl, X509_REVOKED **ret, X509 *x); X509_PKEY * X509_PKEY_new(void ); void X509_PKEY_free(X509_PKEY *a); int i2d_X509_PKEY(X509_PKEY *a,unsigned char **pp); X509_PKEY * d2i_X509_PKEY(X509_PKEY **a,const unsigned char **pp,long length); NETSCAPE_SPKI *NETSCAPE_SPKI_new(void); void NETSCAPE_SPKI_free(NETSCAPE_SPKI *a); NETSCAPE_SPKI *d2i_NETSCAPE_SPKI(NETSCAPE_SPKI **a, const unsigned char **in, long len); int i2d_NETSCAPE_SPKI(NETSCAPE_SPKI *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_SPKI_it; NETSCAPE_SPKAC *NETSCAPE_SPKAC_new(void); void NETSCAPE_SPKAC_free(NETSCAPE_SPKAC *a); NETSCAPE_SPKAC *d2i_NETSCAPE_SPKAC(NETSCAPE_SPKAC **a, const unsigned char **in, long len); int i2d_NETSCAPE_SPKAC(NETSCAPE_SPKAC *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_SPKAC_it; NETSCAPE_CERT_SEQUENCE *NETSCAPE_CERT_SEQUENCE_new(void); void NETSCAPE_CERT_SEQUENCE_free(NETSCAPE_CERT_SEQUENCE *a); NETSCAPE_CERT_SEQUENCE *d2i_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE **a, const unsigned char **in, long len); int i2d_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_CERT_SEQUENCE_it; X509_INFO * X509_INFO_new(void); void X509_INFO_free(X509_INFO *a); char * X509_NAME_oneline(X509_NAME *a,char *buf,int size); int ASN1_verify(i2d_of_void *i2d, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,char *data,EVP_PKEY *pkey); int ASN1_digest(i2d_of_void *i2d,const EVP_MD *type,char *data, unsigned char *md,unsigned int *len); int ASN1_sign(i2d_of_void *i2d, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, char *data,EVP_PKEY *pkey, const EVP_MD *type); int ASN1_item_digest(const ASN1_ITEM *it,const EVP_MD *type,void *data, unsigned char *md,unsigned int *len); int ASN1_item_verify(const ASN1_ITEM *it, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,void *data,EVP_PKEY *pkey); int ASN1_item_sign(const ASN1_ITEM *it, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, void *data, EVP_PKEY *pkey, const EVP_MD *type); int ASN1_item_sign_ctx(const ASN1_ITEM *it, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, void *asn, EVP_MD_CTX *ctx); int X509_set_version(X509 *x,long version); int X509_set_serialNumber(X509 *x, ASN1_INTEGER *serial); ASN1_INTEGER * X509_get_serialNumber(X509 *x); int X509_set_issuer_name(X509 *x, X509_NAME *name); X509_NAME * X509_get_issuer_name(X509 *a); int X509_set_subject_name(X509 *x, X509_NAME *name); X509_NAME * X509_get_subject_name(X509 *a); int X509_set_notBefore(X509 *x, const ASN1_TIME *tm); int X509_set_notAfter(X509 *x, const ASN1_TIME *tm); int X509_set_pubkey(X509 *x, EVP_PKEY *pkey); EVP_PKEY * X509_get_pubkey(X509 *x); ASN1_BIT_STRING * X509_get0_pubkey_bitstr(const X509 *x); int X509_certificate_type(X509 *x,EVP_PKEY *pubkey ); int X509_REQ_set_version(X509_REQ *x,long version); int X509_REQ_set_subject_name(X509_REQ *req,X509_NAME *name); int X509_REQ_set_pubkey(X509_REQ *x, EVP_PKEY *pkey); EVP_PKEY * X509_REQ_get_pubkey(X509_REQ *req); int X509_REQ_extension_nid(int nid); int * X509_REQ_get_extension_nids(void); void X509_REQ_set_extension_nids(int *nids); struct stack_st_X509_EXTENSION *X509_REQ_get_extensions(X509_REQ *req); int X509_REQ_add_extensions_nid(X509_REQ *req, struct stack_st_X509_EXTENSION *exts, int nid); int X509_REQ_add_extensions(X509_REQ *req, struct stack_st_X509_EXTENSION *exts); int X509_REQ_get_attr_count(const X509_REQ *req); int X509_REQ_get_attr_by_NID(const X509_REQ *req, int nid, int lastpos); int X509_REQ_get_attr_by_OBJ(const X509_REQ *req, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *X509_REQ_get_attr(const X509_REQ *req, int loc); X509_ATTRIBUTE *X509_REQ_delete_attr(X509_REQ *req, int loc); int X509_REQ_add1_attr(X509_REQ *req, X509_ATTRIBUTE *attr); int X509_REQ_add1_attr_by_OBJ(X509_REQ *req, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); int X509_REQ_add1_attr_by_NID(X509_REQ *req, int nid, int type, const unsigned char *bytes, int len); int X509_REQ_add1_attr_by_txt(X509_REQ *req, const char *attrname, int type, const unsigned char *bytes, int len); int X509_CRL_set_version(X509_CRL *x, long version); int X509_CRL_set_issuer_name(X509_CRL *x, X509_NAME *name); int X509_CRL_set_lastUpdate(X509_CRL *x, const ASN1_TIME *tm); int X509_CRL_set_nextUpdate(X509_CRL *x, const ASN1_TIME *tm); int X509_CRL_sort(X509_CRL *crl); int X509_REVOKED_set_serialNumber(X509_REVOKED *x, ASN1_INTEGER *serial); int X509_REVOKED_set_revocationDate(X509_REVOKED *r, ASN1_TIME *tm); int X509_REQ_check_private_key(X509_REQ *x509,EVP_PKEY *pkey); int X509_check_private_key(X509 *x509,EVP_PKEY *pkey); int X509_issuer_and_serial_cmp(const X509 *a, const X509 *b); unsigned long X509_issuer_and_serial_hash(X509 *a); int X509_issuer_name_cmp(const X509 *a, const X509 *b); unsigned long X509_issuer_name_hash(X509 *a); int X509_subject_name_cmp(const X509 *a, const X509 *b); unsigned long X509_subject_name_hash(X509 *x); unsigned long X509_issuer_name_hash_old(X509 *a); unsigned long X509_subject_name_hash_old(X509 *x); int X509_cmp(const X509 *a, const X509 *b); int X509_NAME_cmp(const X509_NAME *a, const X509_NAME *b); unsigned long X509_NAME_hash(X509_NAME *x); unsigned long X509_NAME_hash_old(X509_NAME *x); int X509_CRL_cmp(const X509_CRL *a, const X509_CRL *b); int X509_CRL_match(const X509_CRL *a, const X509_CRL *b); int X509_print_ex_fp(FILE *bp,X509 *x, unsigned long nmflag, unsigned long cflag); int X509_print_fp(FILE *bp,X509 *x); int X509_CRL_print_fp(FILE *bp,X509_CRL *x); int X509_REQ_print_fp(FILE *bp,X509_REQ *req); int X509_NAME_print_ex_fp(FILE *fp, X509_NAME *nm, int indent, unsigned long flags); int X509_NAME_print(BIO *bp, X509_NAME *name, int obase); int X509_NAME_print_ex(BIO *out, X509_NAME *nm, int indent, unsigned long flags); int X509_print_ex(BIO *bp,X509 *x, unsigned long nmflag, unsigned long cflag); int X509_print(BIO *bp,X509 *x); int X509_ocspid_print(BIO *bp,X509 *x); int X509_CERT_AUX_print(BIO *bp,X509_CERT_AUX *x, int indent); int X509_CRL_print(BIO *bp,X509_CRL *x); int X509_REQ_print_ex(BIO *bp, X509_REQ *x, unsigned long nmflag, unsigned long cflag); int X509_REQ_print(BIO *bp,X509_REQ *req); int X509_NAME_entry_count(X509_NAME *name); int X509_NAME_get_text_by_NID(X509_NAME *name, int nid, char *buf,int len); int X509_NAME_get_text_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, char *buf,int len); int X509_NAME_get_index_by_NID(X509_NAME *name,int nid,int lastpos); int X509_NAME_get_index_by_OBJ(X509_NAME *name,ASN1_OBJECT *obj, int lastpos); X509_NAME_ENTRY *X509_NAME_get_entry(X509_NAME *name, int loc); X509_NAME_ENTRY *X509_NAME_delete_entry(X509_NAME *name, int loc); int X509_NAME_add_entry(X509_NAME *name,X509_NAME_ENTRY *ne, int loc, int set); int X509_NAME_add_entry_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, int type, unsigned char *bytes, int len, int loc, int set); int X509_NAME_add_entry_by_NID(X509_NAME *name, int nid, int type, unsigned char *bytes, int len, int loc, int set); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_txt(X509_NAME_ENTRY **ne, const char *field, int type, const unsigned char *bytes, int len); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_NID(X509_NAME_ENTRY **ne, int nid, int type,unsigned char *bytes, int len); int X509_NAME_add_entry_by_txt(X509_NAME *name, const char *field, int type, const unsigned char *bytes, int len, int loc, int set); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_OBJ(X509_NAME_ENTRY **ne, ASN1_OBJECT *obj, int type,const unsigned char *bytes, int len); int X509_NAME_ENTRY_set_object(X509_NAME_ENTRY *ne, ASN1_OBJECT *obj); int X509_NAME_ENTRY_set_data(X509_NAME_ENTRY *ne, int type, const unsigned char *bytes, int len); ASN1_OBJECT * X509_NAME_ENTRY_get_object(X509_NAME_ENTRY *ne); ASN1_STRING * X509_NAME_ENTRY_get_data(X509_NAME_ENTRY *ne); int X509v3_get_ext_count(const struct stack_st_X509_EXTENSION *x); int X509v3_get_ext_by_NID(const struct stack_st_X509_EXTENSION *x, int nid, int lastpos); int X509v3_get_ext_by_OBJ(const struct stack_st_X509_EXTENSION *x, ASN1_OBJECT *obj,int lastpos); int X509v3_get_ext_by_critical(const struct stack_st_X509_EXTENSION *x, int crit, int lastpos); X509_EXTENSION *X509v3_get_ext(const struct stack_st_X509_EXTENSION *x, int loc); X509_EXTENSION *X509v3_delete_ext(struct stack_st_X509_EXTENSION *x, int loc); struct stack_st_X509_EXTENSION *X509v3_add_ext(struct stack_st_X509_EXTENSION **x, X509_EXTENSION *ex, int loc); int X509_get_ext_count(X509 *x); int X509_get_ext_by_NID(X509 *x, int nid, int lastpos); int X509_get_ext_by_OBJ(X509 *x,ASN1_OBJECT *obj,int lastpos); int X509_get_ext_by_critical(X509 *x, int crit, int lastpos); X509_EXTENSION *X509_get_ext(X509 *x, int loc); X509_EXTENSION *X509_delete_ext(X509 *x, int loc); int X509_add_ext(X509 *x, X509_EXTENSION *ex, int loc); void * X509_get_ext_d2i(X509 *x, int nid, int *crit, int *idx); int X509_add1_ext_i2d(X509 *x, int nid, void *value, int crit, unsigned long flags); int X509_CRL_get_ext_count(X509_CRL *x); int X509_CRL_get_ext_by_NID(X509_CRL *x, int nid, int lastpos); int X509_CRL_get_ext_by_OBJ(X509_CRL *x,ASN1_OBJECT *obj,int lastpos); int X509_CRL_get_ext_by_critical(X509_CRL *x, int crit, int lastpos); X509_EXTENSION *X509_CRL_get_ext(X509_CRL *x, int loc); X509_EXTENSION *X509_CRL_delete_ext(X509_CRL *x, int loc); int X509_CRL_add_ext(X509_CRL *x, X509_EXTENSION *ex, int loc); void * X509_CRL_get_ext_d2i(X509_CRL *x, int nid, int *crit, int *idx); int X509_CRL_add1_ext_i2d(X509_CRL *x, int nid, void *value, int crit, unsigned long flags); int X509_REVOKED_get_ext_count(X509_REVOKED *x); int X509_REVOKED_get_ext_by_NID(X509_REVOKED *x, int nid, int lastpos); int X509_REVOKED_get_ext_by_OBJ(X509_REVOKED *x,ASN1_OBJECT *obj,int lastpos); int X509_REVOKED_get_ext_by_critical(X509_REVOKED *x, int crit, int lastpos); X509_EXTENSION *X509_REVOKED_get_ext(X509_REVOKED *x, int loc); X509_EXTENSION *X509_REVOKED_delete_ext(X509_REVOKED *x, int loc); int X509_REVOKED_add_ext(X509_REVOKED *x, X509_EXTENSION *ex, int loc); void * X509_REVOKED_get_ext_d2i(X509_REVOKED *x, int nid, int *crit, int *idx); int X509_REVOKED_add1_ext_i2d(X509_REVOKED *x, int nid, void *value, int crit, unsigned long flags); X509_EXTENSION *X509_EXTENSION_create_by_NID(X509_EXTENSION **ex, int nid, int crit, ASN1_OCTET_STRING *data); X509_EXTENSION *X509_EXTENSION_create_by_OBJ(X509_EXTENSION **ex, ASN1_OBJECT *obj,int crit,ASN1_OCTET_STRING *data); int X509_EXTENSION_set_object(X509_EXTENSION *ex,ASN1_OBJECT *obj); int X509_EXTENSION_set_critical(X509_EXTENSION *ex, int crit); int X509_EXTENSION_set_data(X509_EXTENSION *ex, ASN1_OCTET_STRING *data); ASN1_OBJECT * X509_EXTENSION_get_object(X509_EXTENSION *ex); ASN1_OCTET_STRING *X509_EXTENSION_get_data(X509_EXTENSION *ne); int X509_EXTENSION_get_critical(X509_EXTENSION *ex); int X509at_get_attr_count(const struct stack_st_X509_ATTRIBUTE *x); int X509at_get_attr_by_NID(const struct stack_st_X509_ATTRIBUTE *x, int nid, int lastpos); int X509at_get_attr_by_OBJ(const struct stack_st_X509_ATTRIBUTE *sk, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *X509at_get_attr(const struct stack_st_X509_ATTRIBUTE *x, int loc); X509_ATTRIBUTE *X509at_delete_attr(struct stack_st_X509_ATTRIBUTE *x, int loc); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr(struct stack_st_X509_ATTRIBUTE **x, X509_ATTRIBUTE *attr); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_OBJ(struct stack_st_X509_ATTRIBUTE **x, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_NID(struct stack_st_X509_ATTRIBUTE **x, int nid, int type, const unsigned char *bytes, int len); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_txt(struct stack_st_X509_ATTRIBUTE **x, const char *attrname, int type, const unsigned char *bytes, int len); void *X509at_get0_data_by_OBJ(struct stack_st_X509_ATTRIBUTE *x, ASN1_OBJECT *obj, int lastpos, int type); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_NID(X509_ATTRIBUTE **attr, int nid, int atrtype, const void *data, int len); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_OBJ(X509_ATTRIBUTE **attr, const ASN1_OBJECT *obj, int atrtype, const void *data, int len); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_txt(X509_ATTRIBUTE **attr, const char *atrname, int type, const unsigned char *bytes, int len); int X509_ATTRIBUTE_set1_object(X509_ATTRIBUTE *attr, const ASN1_OBJECT *obj); int X509_ATTRIBUTE_set1_data(X509_ATTRIBUTE *attr, int attrtype, const void *data, int len); void *X509_ATTRIBUTE_get0_data(X509_ATTRIBUTE *attr, int idx, int atrtype, void *data); int X509_ATTRIBUTE_count(X509_ATTRIBUTE *attr); ASN1_OBJECT *X509_ATTRIBUTE_get0_object(X509_ATTRIBUTE *attr); ASN1_TYPE *X509_ATTRIBUTE_get0_type(X509_ATTRIBUTE *attr, int idx); int EVP_PKEY_get_attr_count(const EVP_PKEY *key); int EVP_PKEY_get_attr_by_NID(const EVP_PKEY *key, int nid, int lastpos); int EVP_PKEY_get_attr_by_OBJ(const EVP_PKEY *key, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *EVP_PKEY_get_attr(const EVP_PKEY *key, int loc); X509_ATTRIBUTE *EVP_PKEY_delete_attr(EVP_PKEY *key, int loc); int EVP_PKEY_add1_attr(EVP_PKEY *key, X509_ATTRIBUTE *attr); int EVP_PKEY_add1_attr_by_OBJ(EVP_PKEY *key, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); int EVP_PKEY_add1_attr_by_NID(EVP_PKEY *key, int nid, int type, const unsigned char *bytes, int len); int EVP_PKEY_add1_attr_by_txt(EVP_PKEY *key, const char *attrname, int type, const unsigned char *bytes, int len); int X509_verify_cert(X509_STORE_CTX *ctx); X509 *X509_find_by_issuer_and_serial(struct stack_st_X509 *sk,X509_NAME *name, ASN1_INTEGER *serial); X509 *X509_find_by_subject(struct stack_st_X509 *sk,X509_NAME *name); PBEPARAM *PBEPARAM_new(void); void PBEPARAM_free(PBEPARAM *a); PBEPARAM *d2i_PBEPARAM(PBEPARAM **a, const unsigned char **in, long len); int i2d_PBEPARAM(PBEPARAM *a, unsigned char **out); extern const ASN1_ITEM PBEPARAM_it; PBE2PARAM *PBE2PARAM_new(void); void PBE2PARAM_free(PBE2PARAM *a); PBE2PARAM *d2i_PBE2PARAM(PBE2PARAM **a, const unsigned char **in, long len); int i2d_PBE2PARAM(PBE2PARAM *a, unsigned char **out); extern const ASN1_ITEM PBE2PARAM_it; PBKDF2PARAM *PBKDF2PARAM_new(void); void PBKDF2PARAM_free(PBKDF2PARAM *a); PBKDF2PARAM *d2i_PBKDF2PARAM(PBKDF2PARAM **a, const unsigned char **in, long len); int i2d_PBKDF2PARAM(PBKDF2PARAM *a, unsigned char **out); extern const ASN1_ITEM PBKDF2PARAM_it; int PKCS5_pbe_set0_algor(X509_ALGOR *algor, int alg, int iter, const unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe_set(int alg, int iter, const unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe2_set(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe2_set_iv(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen, unsigned char *aiv, int prf_nid); X509_ALGOR *PKCS5_pbkdf2_set(int iter, unsigned char *salt, int saltlen, int prf_nid, int keylen); PKCS8_PRIV_KEY_INFO *PKCS8_PRIV_KEY_INFO_new(void); void PKCS8_PRIV_KEY_INFO_free(PKCS8_PRIV_KEY_INFO *a); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO **a, const unsigned char **in, long len); int i2d_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS8_PRIV_KEY_INFO_it; EVP_PKEY *EVP_PKCS82PKEY(PKCS8_PRIV_KEY_INFO *p8); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8(EVP_PKEY *pkey); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8_broken(EVP_PKEY *pkey, int broken); PKCS8_PRIV_KEY_INFO *PKCS8_set_broken(PKCS8_PRIV_KEY_INFO *p8, int broken); int PKCS8_pkey_set0(PKCS8_PRIV_KEY_INFO *priv, ASN1_OBJECT *aobj, int version, int ptype, void *pval, unsigned char *penc, int penclen); int PKCS8_pkey_get0(ASN1_OBJECT **ppkalg, const unsigned char **pk, int *ppklen, X509_ALGOR **pa, PKCS8_PRIV_KEY_INFO *p8); int X509_PUBKEY_set0_param(X509_PUBKEY *pub, ASN1_OBJECT *aobj, int ptype, void *pval, unsigned char *penc, int penclen); int X509_PUBKEY_get0_param(ASN1_OBJECT **ppkalg, const unsigned char **pk, int *ppklen, X509_ALGOR **pa, X509_PUBKEY *pub); int X509_check_trust(X509 *x, int id, int flags); int X509_TRUST_get_count(void); X509_TRUST * X509_TRUST_get0(int idx); int X509_TRUST_get_by_id(int id); int X509_TRUST_add(int id, int flags, int (*ck)(X509_TRUST *, X509 *, int), char *name, int arg1, void *arg2); void X509_TRUST_cleanup(void); int X509_TRUST_get_flags(X509_TRUST *xp); char *X509_TRUST_get0_name(X509_TRUST *xp); int X509_TRUST_get_trust(X509_TRUST *xp); void ERR_load_X509_strings(void); #define X509_F_ADD_CERT_DIR 100 #define X509_F_BY_FILE_CTRL 101 #define X509_F_CHECK_POLICY 145 #define X509_F_DIR_CTRL 102 #define X509_F_GET_CERT_BY_SUBJECT 103 #define X509_F_NETSCAPE_SPKI_B64_DECODE 129 #define X509_F_NETSCAPE_SPKI_B64_ENCODE 130 #define X509_F_X509AT_ADD1_ATTR 135 #define X509_F_X509V3_ADD_EXT 104 #define X509_F_X509_ATTRIBUTE_CREATE_BY_NID 136 #define X509_F_X509_ATTRIBUTE_CREATE_BY_OBJ 137 #define X509_F_X509_ATTRIBUTE_CREATE_BY_TXT 140 #define X509_F_X509_ATTRIBUTE_GET0_DATA 139 #define X509_F_X509_ATTRIBUTE_SET1_DATA 138 #define X509_F_X509_CHECK_PRIVATE_KEY 128 #define X509_F_X509_CRL_PRINT_FP 147 #define X509_F_X509_EXTENSION_CREATE_BY_NID 108 #define X509_F_X509_EXTENSION_CREATE_BY_OBJ 109 #define X509_F_X509_GET_PUBKEY_PARAMETERS 110 #define X509_F_X509_LOAD_CERT_CRL_FILE 132 #define X509_F_X509_LOAD_CERT_FILE 111 #define X509_F_X509_LOAD_CRL_FILE 112 #define X509_F_X509_NAME_ADD_ENTRY 113 #define X509_F_X509_NAME_ENTRY_CREATE_BY_NID 114 #define X509_F_X509_NAME_ENTRY_CREATE_BY_TXT 131 #define X509_F_X509_NAME_ENTRY_SET_OBJECT 115 #define X509_F_X509_NAME_ONELINE 116 #define X509_F_X509_NAME_PRINT 117 #define X509_F_X509_PRINT_EX_FP 118 #define X509_F_X509_PUBKEY_GET 119 #define X509_F_X509_PUBKEY_SET 120 #define X509_F_X509_REQ_CHECK_PRIVATE_KEY 144 #define X509_F_X509_REQ_PRINT_EX 121 #define X509_F_X509_REQ_PRINT_FP 122 #define X509_F_X509_REQ_TO_X509 123 #define X509_F_X509_STORE_ADD_CERT 124 #define X509_F_X509_STORE_ADD_CRL 125 #define X509_F_X509_STORE_CTX_GET1_ISSUER 146 #define X509_F_X509_STORE_CTX_INIT 143 #define X509_F_X509_STORE_CTX_NEW 142 #define X509_F_X509_STORE_CTX_PURPOSE_INHERIT 134 #define X509_F_X509_TO_X509_REQ 126 #define X509_F_X509_TRUST_ADD 133 #define X509_F_X509_TRUST_SET 141 #define X509_F_X509_VERIFY_CERT 127 #define X509_R_BAD_X509_FILETYPE 100 #define X509_R_BASE64_DECODE_ERROR 118 #define X509_R_CANT_CHECK_DH_KEY 114 #define X509_R_CERT_ALREADY_IN_HASH_TABLE 101 #define X509_R_ERR_ASN1_LIB 102 #define X509_R_INVALID_DIRECTORY 113 #define X509_R_INVALID_FIELD_NAME 119 #define X509_R_INVALID_TRUST 123 #define X509_R_KEY_TYPE_MISMATCH 115 #define X509_R_KEY_VALUES_MISMATCH 116 #define X509_R_LOADING_CERT_DIR 103 #define X509_R_LOADING_DEFAULTS 104 #define X509_R_METHOD_NOT_SUPPORTED 124 #define X509_R_NO_CERT_SET_FOR_US_TO_VERIFY 105 #define X509_R_PUBLIC_KEY_DECODE_ERROR 125 #define X509_R_PUBLIC_KEY_ENCODE_ERROR 126 #define X509_R_SHOULD_RETRY 106 #define X509_R_UNABLE_TO_FIND_PARAMETERS_IN_CHAIN 107 #define X509_R_UNABLE_TO_GET_CERTS_PUBLIC_KEY 108 #define X509_R_UNKNOWN_KEY_TYPE 117 #define X509_R_UNKNOWN_NID 109 #define X509_R_UNKNOWN_PURPOSE_ID 121 #define X509_R_UNKNOWN_TRUST_ID 120 #define X509_R_UNSUPPORTED_ALGORITHM 111 #define X509_R_WRONG_LOOKUP_TYPE 112 #define X509_R_WRONG_TYPE 122 # 157 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/pem.h" 1 3 4 # 60 "/usr/include/openssl/pem.h" 3 4 #define HEADER_PEM_H # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 63 "/usr/include/openssl/pem.h" 2 3 4 # 71 "/usr/include/openssl/pem.h" 3 4 # 1 "/usr/include/openssl/pem2.h" 1 3 4 # 72 "/usr/include/openssl/pem.h" 2 3 4 #define PEM_BUFSIZE 1024 #define PEM_OBJ_UNDEF 0 #define PEM_OBJ_X509 1 #define PEM_OBJ_X509_REQ 2 #define PEM_OBJ_CRL 3 #define PEM_OBJ_SSL_SESSION 4 #define PEM_OBJ_PRIV_KEY 10 #define PEM_OBJ_PRIV_RSA 11 #define PEM_OBJ_PRIV_DSA 12 #define PEM_OBJ_PRIV_DH 13 #define PEM_OBJ_PUB_RSA 14 #define PEM_OBJ_PUB_DSA 15 #define PEM_OBJ_PUB_DH 16 #define PEM_OBJ_DHPARAMS 17 #define PEM_OBJ_DSAPARAMS 18 #define PEM_OBJ_PRIV_RSA_PUBLIC 19 #define PEM_OBJ_PRIV_ECDSA 20 #define PEM_OBJ_PUB_ECDSA 21 #define PEM_OBJ_ECPARAMETERS 22 #define PEM_ERROR 30 #define PEM_DEK_DES_CBC 40 #define PEM_DEK_IDEA_CBC 45 #define PEM_DEK_DES_EDE 50 #define PEM_DEK_DES_ECB 60 #define PEM_DEK_RSA 70 #define PEM_DEK_RSA_MD2 80 #define PEM_DEK_RSA_MD5 90 #define PEM_MD_MD2 NID_md2 #define PEM_MD_MD5 NID_md5 #define PEM_MD_SHA NID_sha #define PEM_MD_MD2_RSA NID_md2WithRSAEncryption #define PEM_MD_MD5_RSA NID_md5WithRSAEncryption #define PEM_MD_SHA_RSA NID_sha1WithRSAEncryption #define PEM_STRING_X509_OLD "X509 CERTIFICATE" #define PEM_STRING_X509 "CERTIFICATE" #define PEM_STRING_X509_PAIR "CERTIFICATE PAIR" #define PEM_STRING_X509_TRUSTED "TRUSTED CERTIFICATE" #define PEM_STRING_X509_REQ_OLD "NEW CERTIFICATE REQUEST" #define PEM_STRING_X509_REQ "CERTIFICATE REQUEST" #define PEM_STRING_X509_CRL "X509 CRL" #define PEM_STRING_EVP_PKEY "ANY PRIVATE KEY" #define PEM_STRING_PUBLIC "PUBLIC KEY" #define PEM_STRING_RSA "RSA PRIVATE KEY" #define PEM_STRING_RSA_PUBLIC "RSA PUBLIC KEY" #define PEM_STRING_DSA "DSA PRIVATE KEY" #define PEM_STRING_DSA_PUBLIC "DSA PUBLIC KEY" #define PEM_STRING_PKCS7 "PKCS7" #define PEM_STRING_PKCS7_SIGNED "PKCS #7 SIGNED DATA" #define PEM_STRING_PKCS8 "ENCRYPTED PRIVATE KEY" #define PEM_STRING_PKCS8INF "PRIVATE KEY" #define PEM_STRING_DHPARAMS "DH PARAMETERS" #define PEM_STRING_SSL_SESSION "SSL SESSION PARAMETERS" #define PEM_STRING_DSAPARAMS "DSA PARAMETERS" #define PEM_STRING_ECDSA_PUBLIC "ECDSA PUBLIC KEY" #define PEM_STRING_ECPARAMETERS "EC PARAMETERS" #define PEM_STRING_ECPRIVATEKEY "EC PRIVATE KEY" #define PEM_STRING_PARAMETERS "PARAMETERS" #define PEM_STRING_CMS "CMS" typedef struct PEM_Encode_Seal_st { EVP_ENCODE_CTX encode; EVP_MD_CTX md; EVP_CIPHER_CTX cipher; } PEM_ENCODE_SEAL_CTX; #define PEM_TYPE_ENCRYPTED 10 #define PEM_TYPE_MIC_ONLY 20 #define PEM_TYPE_MIC_CLEAR 30 #define PEM_TYPE_CLEAR 40 typedef struct pem_recip_st { char *name; X509_NAME *dn; int cipher; int key_enc; } PEM_USER; typedef struct pem_ctx_st { int type; struct { int version; int mode; } proc_type; char *domain; struct { int cipher; } DEK_info; PEM_USER *originator; int num_recipient; PEM_USER **recipient; EVP_MD *md; int md_enc; int md_len; char *md_data; EVP_CIPHER *dec; int key_len; unsigned char *key; int data_enc; int data_len; unsigned char *data; } PEM_CTX; # 222 "/usr/include/openssl/pem.h" 3 4 #define IMPLEMENT_PEM_read_fp(name,type,str,asn1) type *PEM_read_ ##name(FILE *fp, type **x, pem_password_cb *cb, void *u){ return PEM_ASN1_read((d2i_of_void *)d2i_ ##asn1, str,fp,(void **)x,cb,u); } #define IMPLEMENT_PEM_write_fp(name,type,str,asn1) int PEM_write_ ##name(FILE *fp, type *x) { return PEM_ASN1_write((i2d_of_void *)i2d_ ##asn1,str,fp,x,NULL,NULL,0,NULL,NULL); } #define IMPLEMENT_PEM_write_fp_const(name,type,str,asn1) int PEM_write_ ##name(FILE *fp, const type *x) { return PEM_ASN1_write((i2d_of_void *)i2d_ ##asn1,str,fp,(void *)x,NULL,NULL,0,NULL,NULL); } #define IMPLEMENT_PEM_write_cb_fp(name,type,str,asn1) int PEM_write_ ##name(FILE *fp, type *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u) { return PEM_ASN1_write((i2d_of_void *)i2d_ ##asn1,str,fp,x,enc,kstr,klen,cb,u); } #define IMPLEMENT_PEM_write_cb_fp_const(name,type,str,asn1) int PEM_write_ ##name(FILE *fp, type *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u) { return PEM_ASN1_write((i2d_of_void *)i2d_ ##asn1,str,fp,x,enc,kstr,klen,cb,u); } # 258 "/usr/include/openssl/pem.h" 3 4 #define IMPLEMENT_PEM_read_bio(name,type,str,asn1) type *PEM_read_bio_ ##name(BIO *bp, type **x, pem_password_cb *cb, void *u){ return PEM_ASN1_read_bio((d2i_of_void *)d2i_ ##asn1, str,bp,(void **)x,cb,u); } #define IMPLEMENT_PEM_write_bio(name,type,str,asn1) int PEM_write_bio_ ##name(BIO *bp, type *x) { return PEM_ASN1_write_bio((i2d_of_void *)i2d_ ##asn1,str,bp,x,NULL,NULL,0,NULL,NULL); } #define IMPLEMENT_PEM_write_bio_const(name,type,str,asn1) int PEM_write_bio_ ##name(BIO *bp, const type *x) { return PEM_ASN1_write_bio((i2d_of_void *)i2d_ ##asn1,str,bp,(void *)x,NULL,NULL,0,NULL,NULL); } #define IMPLEMENT_PEM_write_cb_bio(name,type,str,asn1) int PEM_write_bio_ ##name(BIO *bp, type *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u) { return PEM_ASN1_write_bio((i2d_of_void *)i2d_ ##asn1,str,bp,x,enc,kstr,klen,cb,u); } #define IMPLEMENT_PEM_write_cb_bio_const(name,type,str,asn1) int PEM_write_bio_ ##name(BIO *bp, type *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u) { return PEM_ASN1_write_bio((i2d_of_void *)i2d_ ##asn1,str,bp,(void *)x,enc,kstr,klen,cb,u); } #define IMPLEMENT_PEM_write(name,type,str,asn1) IMPLEMENT_PEM_write_bio(name, type, str, asn1) IMPLEMENT_PEM_write_fp(name, type, str, asn1) #define IMPLEMENT_PEM_write_const(name,type,str,asn1) IMPLEMENT_PEM_write_bio_const(name, type, str, asn1) IMPLEMENT_PEM_write_fp_const(name, type, str, asn1) #define IMPLEMENT_PEM_write_cb(name,type,str,asn1) IMPLEMENT_PEM_write_cb_bio(name, type, str, asn1) IMPLEMENT_PEM_write_cb_fp(name, type, str, asn1) #define IMPLEMENT_PEM_write_cb_const(name,type,str,asn1) IMPLEMENT_PEM_write_cb_bio_const(name, type, str, asn1) IMPLEMENT_PEM_write_cb_fp_const(name, type, str, asn1) #define IMPLEMENT_PEM_read(name,type,str,asn1) IMPLEMENT_PEM_read_bio(name, type, str, asn1) IMPLEMENT_PEM_read_fp(name, type, str, asn1) #define IMPLEMENT_PEM_rw(name,type,str,asn1) IMPLEMENT_PEM_read(name, type, str, asn1) IMPLEMENT_PEM_write(name, type, str, asn1) #define IMPLEMENT_PEM_rw_const(name,type,str,asn1) IMPLEMENT_PEM_read(name, type, str, asn1) IMPLEMENT_PEM_write_const(name, type, str, asn1) #define IMPLEMENT_PEM_rw_cb(name,type,str,asn1) IMPLEMENT_PEM_read(name, type, str, asn1) IMPLEMENT_PEM_write_cb(name, type, str, asn1) # 332 "/usr/include/openssl/pem.h" 3 4 #define DECLARE_PEM_read_fp(name,type) type *PEM_read_ ##name(FILE *fp, type **x, pem_password_cb *cb, void *u); #define DECLARE_PEM_write_fp(name,type) int PEM_write_ ##name(FILE *fp, type *x); #define DECLARE_PEM_write_fp_const(name,type) int PEM_write_ ##name(FILE *fp, const type *x); #define DECLARE_PEM_write_cb_fp(name,type) int PEM_write_ ##name(FILE *fp, type *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); #define DECLARE_PEM_read_bio(name,type) type *PEM_read_bio_ ##name(BIO *bp, type **x, pem_password_cb *cb, void *u); #define DECLARE_PEM_write_bio(name,type) int PEM_write_bio_ ##name(BIO *bp, type *x); #define DECLARE_PEM_write_bio_const(name,type) int PEM_write_bio_ ##name(BIO *bp, const type *x); #define DECLARE_PEM_write_cb_bio(name,type) int PEM_write_bio_ ##name(BIO *bp, type *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); # 370 "/usr/include/openssl/pem.h" 3 4 #define DECLARE_PEM_write(name,type) DECLARE_PEM_write_bio(name, type) DECLARE_PEM_write_fp(name, type) #define DECLARE_PEM_write_const(name,type) DECLARE_PEM_write_bio_const(name, type) DECLARE_PEM_write_fp_const(name, type) #define DECLARE_PEM_write_cb(name,type) DECLARE_PEM_write_cb_bio(name, type) DECLARE_PEM_write_cb_fp(name, type) #define DECLARE_PEM_read(name,type) DECLARE_PEM_read_bio(name, type) DECLARE_PEM_read_fp(name, type) #define DECLARE_PEM_rw(name,type) DECLARE_PEM_read(name, type) DECLARE_PEM_write(name, type) #define DECLARE_PEM_rw_const(name,type) DECLARE_PEM_read(name, type) DECLARE_PEM_write_const(name, type) #define DECLARE_PEM_rw_cb(name,type) DECLARE_PEM_read(name, type) DECLARE_PEM_write_cb(name, type) typedef int pem_password_cb(char *buf, int size, int rwflag, void *userdata); int PEM_get_EVP_CIPHER_INFO(char *header, EVP_CIPHER_INFO *cipher); int PEM_do_header (EVP_CIPHER_INFO *cipher, unsigned char *data,long *len, pem_password_cb *callback,void *u); int PEM_read_bio(BIO *bp, char **name, char **header, unsigned char **data,long *len); int PEM_write_bio(BIO *bp,const char *name,char *hdr,unsigned char *data, long len); int PEM_bytes_read_bio(unsigned char **pdata, long *plen, char **pnm, const char *name, BIO *bp, pem_password_cb *cb, void *u); void * PEM_ASN1_read_bio(d2i_of_void *d2i, const char *name, BIO *bp, void **x, pem_password_cb *cb, void *u); int PEM_ASN1_write_bio(i2d_of_void *i2d,const char *name,BIO *bp, void *x, const EVP_CIPHER *enc,unsigned char *kstr,int klen, pem_password_cb *cb, void *u); struct stack_st_X509_INFO * PEM_X509_INFO_read_bio(BIO *bp, struct stack_st_X509_INFO *sk, pem_password_cb *cb, void *u); int PEM_X509_INFO_write_bio(BIO *bp,X509_INFO *xi, EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cd, void *u); int PEM_read(FILE *fp, char **name, char **header, unsigned char **data,long *len); int PEM_write(FILE *fp,char *name,char *hdr,unsigned char *data,long len); void * PEM_ASN1_read(d2i_of_void *d2i, const char *name, FILE *fp, void **x, pem_password_cb *cb, void *u); int PEM_ASN1_write(i2d_of_void *i2d,const char *name,FILE *fp, void *x,const EVP_CIPHER *enc,unsigned char *kstr, int klen,pem_password_cb *callback, void *u); struct stack_st_X509_INFO * PEM_X509_INFO_read(FILE *fp, struct stack_st_X509_INFO *sk, pem_password_cb *cb, void *u); int PEM_SealInit(PEM_ENCODE_SEAL_CTX *ctx, EVP_CIPHER *type, EVP_MD *md_type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk); void PEM_SealUpdate(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *out, int *outl, unsigned char *in, int inl); int PEM_SealFinal(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *sig,int *sigl, unsigned char *out, int *outl, EVP_PKEY *priv); void PEM_SignInit(EVP_MD_CTX *ctx, EVP_MD *type); void PEM_SignUpdate(EVP_MD_CTX *ctx,unsigned char *d,unsigned int cnt); int PEM_SignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, unsigned int *siglen, EVP_PKEY *pkey); int PEM_def_callback(char *buf, int num, int w, void *key); void PEM_proc_type(char *buf, int type); void PEM_dek_info(char *buf, const char *type, int len, char *str); X509 *PEM_read_bio_X509(BIO *bp, X509 **x, pem_password_cb *cb, void *u); X509 *PEM_read_X509(FILE *fp, X509 **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509(BIO *bp, X509 *x); int PEM_write_X509(FILE *fp, X509 *x); X509 *PEM_read_bio_X509_AUX(BIO *bp, X509 **x, pem_password_cb *cb, void *u); X509 *PEM_read_X509_AUX(FILE *fp, X509 **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_AUX(BIO *bp, X509 *x); int PEM_write_X509_AUX(FILE *fp, X509 *x); X509_CERT_PAIR *PEM_read_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR **x, pem_password_cb *cb, void *u); X509_CERT_PAIR *PEM_read_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR *x); int PEM_write_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR *x); X509_REQ *PEM_read_bio_X509_REQ(BIO *bp, X509_REQ **x, pem_password_cb *cb, void *u); X509_REQ *PEM_read_X509_REQ(FILE *fp, X509_REQ **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_REQ(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ(FILE *fp, X509_REQ *x); int PEM_write_bio_X509_REQ_NEW(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ_NEW(FILE *fp, X509_REQ *x); X509_CRL *PEM_read_bio_X509_CRL(BIO *bp, X509_CRL **x, pem_password_cb *cb, void *u); X509_CRL *PEM_read_X509_CRL(FILE *fp, X509_CRL **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CRL(BIO *bp, X509_CRL *x); int PEM_write_X509_CRL(FILE *fp, X509_CRL *x); PKCS7 *PEM_read_bio_PKCS7(BIO *bp, PKCS7 **x, pem_password_cb *cb, void *u); PKCS7 *PEM_read_PKCS7(FILE *fp, PKCS7 **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS7(BIO *bp, PKCS7 *x); int PEM_write_PKCS7(FILE *fp, PKCS7 *x); NETSCAPE_CERT_SEQUENCE *PEM_read_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE **x, pem_password_cb *cb, void *u); NETSCAPE_CERT_SEQUENCE *PEM_read_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE **x, pem_password_cb *cb, void *u); int PEM_write_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE *x); int PEM_write_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE *x); X509_SIG *PEM_read_bio_PKCS8(BIO *bp, X509_SIG **x, pem_password_cb *cb, void *u); X509_SIG *PEM_read_PKCS8(FILE *fp, X509_SIG **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8(BIO *bp, X509_SIG *x); int PEM_write_PKCS8(FILE *fp, X509_SIG *x); PKCS8_PRIV_KEY_INFO *PEM_read_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO **x, pem_password_cb *cb, void *u); PKCS8_PRIV_KEY_INFO *PEM_read_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO *x); int PEM_write_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO *x); RSA *PEM_read_bio_RSAPrivateKey(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPrivateKey(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPrivateKey(BIO *bp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_RSAPrivateKey(FILE *fp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); RSA *PEM_read_bio_RSAPublicKey(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPublicKey(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPublicKey(BIO *bp, const RSA *x); int PEM_write_RSAPublicKey(FILE *fp, const RSA *x); RSA *PEM_read_bio_RSA_PUBKEY(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSA_PUBKEY(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSA_PUBKEY(BIO *bp, RSA *x); int PEM_write_RSA_PUBKEY(FILE *fp, RSA *x); DSA *PEM_read_bio_DSAPrivateKey(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAPrivateKey(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAPrivateKey(BIO *bp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_DSAPrivateKey(FILE *fp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); DSA *PEM_read_bio_DSA_PUBKEY(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSA_PUBKEY(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSA_PUBKEY(BIO *bp, DSA *x); int PEM_write_DSA_PUBKEY(FILE *fp, DSA *x); DSA *PEM_read_bio_DSAparams(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAparams(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAparams(BIO *bp, const DSA *x); int PEM_write_DSAparams(FILE *fp, const DSA *x); EC_GROUP *PEM_read_bio_ECPKParameters(BIO *bp, EC_GROUP **x, pem_password_cb *cb, void *u); EC_GROUP *PEM_read_ECPKParameters(FILE *fp, EC_GROUP **x, pem_password_cb *cb, void *u); int PEM_write_bio_ECPKParameters(BIO *bp, const EC_GROUP *x); int PEM_write_ECPKParameters(FILE *fp, const EC_GROUP *x); EC_KEY *PEM_read_bio_ECPrivateKey(BIO *bp, EC_KEY **x, pem_password_cb *cb, void *u); EC_KEY *PEM_read_ECPrivateKey(FILE *fp, EC_KEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_ECPrivateKey(BIO *bp, EC_KEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_ECPrivateKey(FILE *fp, EC_KEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EC_KEY *PEM_read_bio_EC_PUBKEY(BIO *bp, EC_KEY **x, pem_password_cb *cb, void *u); EC_KEY *PEM_read_EC_PUBKEY(FILE *fp, EC_KEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_EC_PUBKEY(BIO *bp, EC_KEY *x); int PEM_write_EC_PUBKEY(FILE *fp, EC_KEY *x); DH *PEM_read_bio_DHparams(BIO *bp, DH **x, pem_password_cb *cb, void *u); DH *PEM_read_DHparams(FILE *fp, DH **x, pem_password_cb *cb, void *u); int PEM_write_bio_DHparams(BIO *bp, const DH *x); int PEM_write_DHparams(FILE *fp, const DH *x); EVP_PKEY *PEM_read_bio_PrivateKey(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PrivateKey(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_PrivateKey(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PrivateKey(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_bio_PUBKEY(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PUBKEY(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_PUBKEY(BIO *bp, EVP_PKEY *x); int PEM_write_PUBKEY(FILE *fp, EVP_PKEY *x); int PEM_write_bio_PKCS8PrivateKey_nid(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8PrivateKey(BIO *, EVP_PKEY *, const EVP_CIPHER *, char *, int, pem_password_cb *, void *); int i2d_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_nid_bio(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *d2i_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_nid_fp(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PKCS8PrivateKey_nid(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *d2i_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_PKCS8PrivateKey(FILE *fp,EVP_PKEY *x,const EVP_CIPHER *enc, char *kstr,int klen, pem_password_cb *cd, void *u); EVP_PKEY *PEM_read_bio_Parameters(BIO *bp, EVP_PKEY **x); int PEM_write_bio_Parameters(BIO *bp, EVP_PKEY *x); EVP_PKEY *b2i_PrivateKey(const unsigned char **in, long length); EVP_PKEY *b2i_PublicKey(const unsigned char **in, long length); EVP_PKEY *b2i_PrivateKey_bio(BIO *in); EVP_PKEY *b2i_PublicKey_bio(BIO *in); int i2b_PrivateKey_bio(BIO *out, EVP_PKEY *pk); int i2b_PublicKey_bio(BIO *out, EVP_PKEY *pk); EVP_PKEY *b2i_PVK_bio(BIO *in, pem_password_cb *cb, void *u); int i2b_PVK_bio(BIO *out, EVP_PKEY *pk, int enclevel, pem_password_cb *cb, void *u); void ERR_load_PEM_strings(void); #define PEM_F_B2I_DSS 127 #define PEM_F_B2I_PVK_BIO 128 #define PEM_F_B2I_RSA 129 #define PEM_F_CHECK_BITLEN_DSA 130 #define PEM_F_CHECK_BITLEN_RSA 131 #define PEM_F_D2I_PKCS8PRIVATEKEY_BIO 120 #define PEM_F_D2I_PKCS8PRIVATEKEY_FP 121 #define PEM_F_DO_B2I 132 #define PEM_F_DO_B2I_BIO 133 #define PEM_F_DO_BLOB_HEADER 134 #define PEM_F_DO_PK8PKEY 126 #define PEM_F_DO_PK8PKEY_FP 125 #define PEM_F_DO_PVK_BODY 135 #define PEM_F_DO_PVK_HEADER 136 #define PEM_F_I2B_PVK 137 #define PEM_F_I2B_PVK_BIO 138 #define PEM_F_LOAD_IV 101 #define PEM_F_PEM_ASN1_READ 102 #define PEM_F_PEM_ASN1_READ_BIO 103 #define PEM_F_PEM_ASN1_WRITE 104 #define PEM_F_PEM_ASN1_WRITE_BIO 105 #define PEM_F_PEM_DEF_CALLBACK 100 #define PEM_F_PEM_DO_HEADER 106 #define PEM_F_PEM_F_PEM_WRITE_PKCS8PRIVATEKEY 118 #define PEM_F_PEM_GET_EVP_CIPHER_INFO 107 #define PEM_F_PEM_PK8PKEY 119 #define PEM_F_PEM_READ 108 #define PEM_F_PEM_READ_BIO 109 #define PEM_F_PEM_READ_BIO_PARAMETERS 140 #define PEM_F_PEM_READ_BIO_PRIVATEKEY 123 #define PEM_F_PEM_READ_PRIVATEKEY 124 #define PEM_F_PEM_SEALFINAL 110 #define PEM_F_PEM_SEALINIT 111 #define PEM_F_PEM_SIGNFINAL 112 #define PEM_F_PEM_WRITE 113 #define PEM_F_PEM_WRITE_BIO 114 #define PEM_F_PEM_WRITE_PRIVATEKEY 139 #define PEM_F_PEM_X509_INFO_READ 115 #define PEM_F_PEM_X509_INFO_READ_BIO 116 #define PEM_F_PEM_X509_INFO_WRITE_BIO 117 #define PEM_R_BAD_BASE64_DECODE 100 #define PEM_R_BAD_DECRYPT 101 #define PEM_R_BAD_END_LINE 102 #define PEM_R_BAD_IV_CHARS 103 #define PEM_R_BAD_MAGIC_NUMBER 116 #define PEM_R_BAD_PASSWORD_READ 104 #define PEM_R_BAD_VERSION_NUMBER 117 #define PEM_R_BIO_WRITE_FAILURE 118 #define PEM_R_CIPHER_IS_NULL 127 #define PEM_R_ERROR_CONVERTING_PRIVATE_KEY 115 #define PEM_R_EXPECTING_PRIVATE_KEY_BLOB 119 #define PEM_R_EXPECTING_PUBLIC_KEY_BLOB 120 #define PEM_R_INCONSISTENT_HEADER 121 #define PEM_R_KEYBLOB_HEADER_PARSE_ERROR 122 #define PEM_R_KEYBLOB_TOO_SHORT 123 #define PEM_R_NOT_DEK_INFO 105 #define PEM_R_NOT_ENCRYPTED 106 #define PEM_R_NOT_PROC_TYPE 107 #define PEM_R_NO_START_LINE 108 #define PEM_R_PROBLEMS_GETTING_PASSWORD 109 #define PEM_R_PUBLIC_KEY_NO_RSA 110 #define PEM_R_PVK_DATA_TOO_SHORT 124 #define PEM_R_PVK_TOO_SHORT 125 #define PEM_R_READ_KEY 111 #define PEM_R_SHORT_HEADER 112 #define PEM_R_UNSUPPORTED_CIPHER 113 #define PEM_R_UNSUPPORTED_ENCRYPTION 114 #define PEM_R_UNSUPPORTED_KEY_COMPONENTS 126 # 163 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/hmac.h" 1 3 4 # 59 "/usr/include/openssl/hmac.h" 3 4 #define HEADER_HMAC_H # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 62 "/usr/include/openssl/hmac.h" 2 3 4 #define HMAC_MAX_MD_CBLOCK 128 typedef struct hmac_ctx_st { const EVP_MD *md; EVP_MD_CTX md_ctx; EVP_MD_CTX i_ctx; EVP_MD_CTX o_ctx; unsigned int key_length; unsigned char key[128]; } HMAC_CTX; #define HMAC_size(e) (EVP_MD_size((e)->md)) void HMAC_CTX_init(HMAC_CTX *ctx); void HMAC_CTX_cleanup(HMAC_CTX *ctx); #define HMAC_cleanup(ctx) HMAC_CTX_cleanup(ctx) int HMAC_Init(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md); int HMAC_Init_ex(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md, ENGINE *impl); int HMAC_Update(HMAC_CTX *ctx, const unsigned char *data, size_t len); int HMAC_Final(HMAC_CTX *ctx, unsigned char *md, unsigned int *len); unsigned char *HMAC(const EVP_MD *evp_md, const void *key, int key_len, const unsigned char *d, size_t n, unsigned char *md, unsigned int *md_len); int HMAC_CTX_copy(HMAC_CTX *dctx, HMAC_CTX *sctx); void HMAC_CTX_set_flags(HMAC_CTX *ctx, unsigned long flags); # 164 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/kssl.h" 1 3 4 # 64 "/usr/include/openssl/kssl.h" 3 4 #define KSSL_H # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 91 "/usr/include/openssl/opensslconf.h" 3 4 #define OPENSSL_CPUID_OBJ #undef I386_ONLY # 105 "/usr/include/openssl/opensslconf.h" 3 4 #undef OPENSSL_UNISTD #define OPENSSL_UNISTD #undef OPENSSL_EXPORT_VAR_AS_FUNCTION # 67 "/usr/include/openssl/kssl.h" 2 3 4 # 166 "/usr/include/openssl/ssl.h" 2 3 4 # 177 "/usr/include/openssl/ssl.h" 3 4 #define SSL_SESSION_ASN1_VERSION 0x0001 #define SSL_TXT_NULL_WITH_MD5 SSL2_TXT_NULL_WITH_MD5 #define SSL_TXT_RC4_128_WITH_MD5 SSL2_TXT_RC4_128_WITH_MD5 #define SSL_TXT_RC4_128_EXPORT40_WITH_MD5 SSL2_TXT_RC4_128_EXPORT40_WITH_MD5 #define SSL_TXT_RC2_128_CBC_WITH_MD5 SSL2_TXT_RC2_128_CBC_WITH_MD5 #define SSL_TXT_RC2_128_CBC_EXPORT40_WITH_MD5 SSL2_TXT_RC2_128_CBC_EXPORT40_WITH_MD5 #define SSL_TXT_IDEA_128_CBC_WITH_MD5 SSL2_TXT_IDEA_128_CBC_WITH_MD5 #define SSL_TXT_DES_64_CBC_WITH_MD5 SSL2_TXT_DES_64_CBC_WITH_MD5 #define SSL_TXT_DES_64_CBC_WITH_SHA SSL2_TXT_DES_64_CBC_WITH_SHA #define SSL_TXT_DES_192_EDE3_CBC_WITH_MD5 SSL2_TXT_DES_192_EDE3_CBC_WITH_MD5 #define SSL_TXT_DES_192_EDE3_CBC_WITH_SHA SSL2_TXT_DES_192_EDE3_CBC_WITH_SHA #define SSL_TXT_KRB5_DES_64_CBC_SHA SSL3_TXT_KRB5_DES_64_CBC_SHA #define SSL_TXT_KRB5_DES_192_CBC3_SHA SSL3_TXT_KRB5_DES_192_CBC3_SHA #define SSL_TXT_KRB5_RC4_128_SHA SSL3_TXT_KRB5_RC4_128_SHA #define SSL_TXT_KRB5_IDEA_128_CBC_SHA SSL3_TXT_KRB5_IDEA_128_CBC_SHA #define SSL_TXT_KRB5_DES_64_CBC_MD5 SSL3_TXT_KRB5_DES_64_CBC_MD5 #define SSL_TXT_KRB5_DES_192_CBC3_MD5 SSL3_TXT_KRB5_DES_192_CBC3_MD5 #define SSL_TXT_KRB5_RC4_128_MD5 SSL3_TXT_KRB5_RC4_128_MD5 #define SSL_TXT_KRB5_IDEA_128_CBC_MD5 SSL3_TXT_KRB5_IDEA_128_CBC_MD5 #define SSL_TXT_KRB5_DES_40_CBC_SHA SSL3_TXT_KRB5_DES_40_CBC_SHA #define SSL_TXT_KRB5_RC2_40_CBC_SHA SSL3_TXT_KRB5_RC2_40_CBC_SHA #define SSL_TXT_KRB5_RC4_40_SHA SSL3_TXT_KRB5_RC4_40_SHA #define SSL_TXT_KRB5_DES_40_CBC_MD5 SSL3_TXT_KRB5_DES_40_CBC_MD5 #define SSL_TXT_KRB5_RC2_40_CBC_MD5 SSL3_TXT_KRB5_RC2_40_CBC_MD5 #define SSL_TXT_KRB5_RC4_40_MD5 SSL3_TXT_KRB5_RC4_40_MD5 #define SSL_TXT_KRB5_DES_40_CBC_SHA SSL3_TXT_KRB5_DES_40_CBC_SHA #define SSL_TXT_KRB5_DES_40_CBC_MD5 SSL3_TXT_KRB5_DES_40_CBC_MD5 #define SSL_TXT_KRB5_DES_64_CBC_SHA SSL3_TXT_KRB5_DES_64_CBC_SHA #define SSL_TXT_KRB5_DES_64_CBC_MD5 SSL3_TXT_KRB5_DES_64_CBC_MD5 #define SSL_TXT_KRB5_DES_192_CBC3_SHA SSL3_TXT_KRB5_DES_192_CBC3_SHA #define SSL_TXT_KRB5_DES_192_CBC3_MD5 SSL3_TXT_KRB5_DES_192_CBC3_MD5 #define SSL_MAX_KRB5_PRINCIPAL_LENGTH 256 #define SSL_MAX_SSL_SESSION_ID_LENGTH 32 #define SSL_MAX_SID_CTX_LENGTH 32 #define SSL_MIN_RSA_MODULUS_LENGTH_IN_BYTES (512/8) #define SSL_MAX_KEY_ARG_LENGTH 8 #define SSL_MAX_MASTER_KEY_LENGTH 48 #define SSL_TXT_EXP40 "EXPORT40" #define SSL_TXT_EXP56 "EXPORT56" #define SSL_TXT_LOW "LOW" #define SSL_TXT_MEDIUM "MEDIUM" #define SSL_TXT_HIGH "HIGH" #define SSL_TXT_FIPS "FIPS" #define SSL_TXT_kFZA "kFZA" #define SSL_TXT_aFZA "aFZA" #define SSL_TXT_eFZA "eFZA" #define SSL_TXT_FZA "FZA" #define SSL_TXT_aNULL "aNULL" #define SSL_TXT_eNULL "eNULL" #define SSL_TXT_NULL "NULL" #define SSL_TXT_kRSA "kRSA" #define SSL_TXT_kDHr "kDHr" #define SSL_TXT_kDHd "kDHd" #define SSL_TXT_kDH "kDH" #define SSL_TXT_kEDH "kEDH" #define SSL_TXT_kKRB5 "kKRB5" #define SSL_TXT_kECDHr "kECDHr" #define SSL_TXT_kECDHe "kECDHe" #define SSL_TXT_kECDH "kECDH" #define SSL_TXT_kEECDH "kEECDH" #define SSL_TXT_kPSK "kPSK" #define SSL_TXT_kGOST "kGOST" #define SSL_TXT_kSRP "kSRP" #define SSL_TXT_aRSA "aRSA" #define SSL_TXT_aDSS "aDSS" #define SSL_TXT_aDH "aDH" #define SSL_TXT_aECDH "aECDH" #define SSL_TXT_aKRB5 "aKRB5" #define SSL_TXT_aECDSA "aECDSA" #define SSL_TXT_aPSK "aPSK" #define SSL_TXT_aGOST94 "aGOST94" #define SSL_TXT_aGOST01 "aGOST01" #define SSL_TXT_aGOST "aGOST" #define SSL_TXT_aSRP "aSRP" #define SSL_TXT_DSS "DSS" #define SSL_TXT_DH "DH" #define SSL_TXT_EDH "EDH" #define SSL_TXT_ADH "ADH" #define SSL_TXT_RSA "RSA" #define SSL_TXT_ECDH "ECDH" #define SSL_TXT_EECDH "EECDH" #define SSL_TXT_AECDH "AECDH" #define SSL_TXT_ECDSA "ECDSA" #define SSL_TXT_KRB5 "KRB5" #define SSL_TXT_PSK "PSK" #define SSL_TXT_SRP "SRP" #define SSL_TXT_DES "DES" #define SSL_TXT_3DES "3DES" #define SSL_TXT_RC4 "RC4" #define SSL_TXT_RC2 "RC2" #define SSL_TXT_IDEA "IDEA" #define SSL_TXT_SEED "SEED" #define SSL_TXT_AES128 "AES128" #define SSL_TXT_AES256 "AES256" #define SSL_TXT_AES "AES" #define SSL_TXT_AES_GCM "AESGCM" #define SSL_TXT_CAMELLIA128 "CAMELLIA128" #define SSL_TXT_CAMELLIA256 "CAMELLIA256" #define SSL_TXT_CAMELLIA "CAMELLIA" #define SSL_TXT_MD5 "MD5" #define SSL_TXT_SHA1 "SHA1" #define SSL_TXT_SHA "SHA" #define SSL_TXT_GOST94 "GOST94" #define SSL_TXT_GOST89MAC "GOST89MAC" #define SSL_TXT_SHA256 "SHA256" #define SSL_TXT_SHA384 "SHA384" #define SSL_TXT_SSLV2 "SSLv2" #define SSL_TXT_SSLV3 "SSLv3" #define SSL_TXT_TLSV1 "TLSv1" #define SSL_TXT_TLSV1_1 "TLSv1.1" #define SSL_TXT_TLSV1_2 "TLSv1.2" #define SSL_TXT_EXP "EXP" #define SSL_TXT_EXPORT "EXPORT" #define SSL_TXT_ALL "ALL" # 329 "/usr/include/openssl/ssl.h" 3 4 #define SSL_TXT_CMPALL "COMPLEMENTOFALL" #define SSL_TXT_CMPDEF "COMPLEMENTOFDEFAULT" #define SSL_DEFAULT_CIPHER_LIST "ALL:!EXPORT:!aNULL:!eNULL:!SSLv2" # 344 "/usr/include/openssl/ssl.h" 3 4 #define SSL_SENT_SHUTDOWN 1 #define SSL_RECEIVED_SHUTDOWN 2 # 359 "/usr/include/openssl/ssl.h" 3 4 #define SSL_FILETYPE_ASN1 X509_FILETYPE_ASN1 #define SSL_FILETYPE_PEM X509_FILETYPE_PEM typedef struct ssl_st *ssl_crock_st; typedef struct tls_session_ticket_ext_st TLS_SESSION_TICKET_EXT; typedef struct ssl_method_st SSL_METHOD; typedef struct ssl_cipher_st SSL_CIPHER; typedef struct ssl_session_st SSL_SESSION; struct stack_st_SSL_CIPHER { _STACK stack; }; typedef struct srtp_protection_profile_st { const char *name; unsigned long id; } SRTP_PROTECTION_PROFILE; struct stack_st_SRTP_PROTECTION_PROFILE { _STACK stack; }; typedef int (*tls_session_ticket_ext_cb_fn)(SSL *s, const unsigned char *data, int len, void *arg); typedef int (*tls_session_secret_cb_fn)(SSL *s, void *secret, int *secret_len, struct stack_st_SSL_CIPHER *peer_ciphers, SSL_CIPHER **cipher, void *arg); struct ssl_cipher_st { int valid; const char *name; unsigned long id; unsigned long algorithm_mkey; unsigned long algorithm_auth; unsigned long algorithm_enc; unsigned long algorithm_mac; unsigned long algorithm_ssl; unsigned long algo_strength; unsigned long algorithm2; int strength_bits; int alg_bits; }; struct ssl_method_st { int version; int (*ssl_new)(SSL *s); void (*ssl_clear)(SSL *s); void (*ssl_free)(SSL *s); int (*ssl_accept)(SSL *s); int (*ssl_connect)(SSL *s); int (*ssl_read)(SSL *s,void *buf,int len); int (*ssl_peek)(SSL *s,void *buf,int len); int (*ssl_write)(SSL *s,const void *buf,int len); int (*ssl_shutdown)(SSL *s); int (*ssl_renegotiate)(SSL *s); int (*ssl_renegotiate_check)(SSL *s); long (*ssl_get_message)(SSL *s, int st1, int stn, int mt, long max, int *ok); int (*ssl_read_bytes)(SSL *s, int type, unsigned char *buf, int len, int peek); int (*ssl_write_bytes)(SSL *s, int type, const void *buf_, int len); int (*ssl_dispatch_alert)(SSL *s); long (*ssl_ctrl)(SSL *s,int cmd,long larg,void *parg); long (*ssl_ctx_ctrl)(SSL_CTX *ctx,int cmd,long larg,void *parg); const SSL_CIPHER *(*get_cipher_by_char)(const unsigned char *ptr); int (*put_cipher_by_char)(const SSL_CIPHER *cipher,unsigned char *ptr); int (*ssl_pending)(const SSL *s); int (*num_ciphers)(void); const SSL_CIPHER *(*get_cipher)(unsigned ncipher); const struct ssl_method_st *(*get_ssl_method)(int version); long (*get_timeout)(void); struct ssl3_enc_method *ssl3_enc; int (*ssl_version)(void); long (*ssl_callback_ctrl)(SSL *s, int cb_id, void (*fp)(void)); long (*ssl_ctx_callback_ctrl)(SSL_CTX *s, int cb_id, void (*fp)(void)); }; # 470 "/usr/include/openssl/ssl.h" 3 4 struct ssl_session_st { int ssl_version; unsigned int key_arg_length; unsigned char key_arg[8]; int master_key_length; unsigned char master_key[48]; unsigned int session_id_length; unsigned char session_id[32]; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; char *psk_identity_hint; char *psk_identity; int not_resumable; struct sess_cert_st *sess_cert; X509 *peer; long verify_result; int references; long timeout; long time; unsigned int compress_meth; const SSL_CIPHER *cipher; unsigned long cipher_id; struct stack_st_SSL_CIPHER *ciphers; CRYPTO_EX_DATA ex_data; struct ssl_session_st *prev,*next; char *tlsext_hostname; size_t tlsext_ecpointformatlist_length; unsigned char *tlsext_ecpointformatlist; size_t tlsext_ellipticcurvelist_length; unsigned char *tlsext_ellipticcurvelist; unsigned char *tlsext_tick; size_t tlsext_ticklen; long tlsext_tick_lifetime_hint; char *srp_username; }; #define SSL_OP_MICROSOFT_SESS_ID_BUG 0x00000001L #define SSL_OP_NETSCAPE_CHALLENGE_BUG 0x00000002L #define SSL_OP_LEGACY_SERVER_CONNECT 0x00000004L #define SSL_OP_NETSCAPE_REUSE_CIPHER_CHANGE_BUG 0x00000008L #define SSL_OP_SSLREF2_REUSE_CERT_TYPE_BUG 0x00000010L #define SSL_OP_MICROSOFT_BIG_SSLV3_BUFFER 0x00000020L #define SSL_OP_MSIE_SSLV2_RSA_PADDING 0x00000040L #define SSL_OP_SSLEAY_080_CLIENT_DH_BUG 0x00000080L #define SSL_OP_TLS_D5_BUG 0x00000100L #define SSL_OP_TLS_BLOCK_PADDING_BUG 0x00000200L #define SSL_OP_DONT_INSERT_EMPTY_FRAGMENTS 0x00000800L #define SSL_OP_ALL 0x80000BFFL #define SSL_OP_NO_QUERY_MTU 0x00001000L #define SSL_OP_COOKIE_EXCHANGE 0x00002000L #define SSL_OP_NO_TICKET 0x00004000L #define SSL_OP_CISCO_ANYCONNECT 0x00008000L #define SSL_OP_NO_SESSION_RESUMPTION_ON_RENEGOTIATION 0x00010000L #define SSL_OP_NO_COMPRESSION 0x00020000L #define SSL_OP_ALLOW_UNSAFE_LEGACY_RENEGOTIATION 0x00040000L #define SSL_OP_SINGLE_ECDH_USE 0x00080000L #define SSL_OP_SINGLE_DH_USE 0x00100000L #define SSL_OP_EPHEMERAL_RSA 0x0 #define SSL_OP_CIPHER_SERVER_PREFERENCE 0x00400000L #define SSL_OP_TLS_ROLLBACK_BUG 0x00800000L #define SSL_OP_NO_SSLv2 0x01000000L #define SSL_OP_NO_SSLv3 0x02000000L #define SSL_OP_NO_TLSv1 0x04000000L #define SSL_OP_NO_TLSv1_2 0x08000000L #define SSL_OP_NO_TLSv1_1 0x10000000L #define SSL_OP_PKCS1_CHECK_1 0x0 #define SSL_OP_PKCS1_CHECK_2 0x0 #define SSL_OP_NETSCAPE_CA_DN_BUG 0x20000000L #define SSL_OP_NETSCAPE_DEMO_CIPHER_CHANGE_BUG 0x40000000L #define SSL_OP_CRYPTOPRO_TLSEXT_BUG 0x80000000L #define SSL_MODE_ENABLE_PARTIAL_WRITE 0x00000001L #define SSL_MODE_ACCEPT_MOVING_WRITE_BUFFER 0x00000002L #define SSL_MODE_AUTO_RETRY 0x00000004L #define SSL_MODE_NO_AUTO_CHAIN 0x00000008L #define SSL_MODE_RELEASE_BUFFERS 0x00000010L #define SSL_MODE_SEND_FALLBACK_SCSV 0x00000080L #define SSL_CTX_set_options(ctx,op) SSL_CTX_ctrl((ctx),SSL_CTRL_OPTIONS,(op),NULL) #define SSL_CTX_clear_options(ctx,op) SSL_CTX_ctrl((ctx),SSL_CTRL_CLEAR_OPTIONS,(op),NULL) #define SSL_CTX_get_options(ctx) SSL_CTX_ctrl((ctx),SSL_CTRL_OPTIONS,0,NULL) #define SSL_set_options(ssl,op) SSL_ctrl((ssl),SSL_CTRL_OPTIONS,(op),NULL) #define SSL_clear_options(ssl,op) SSL_ctrl((ssl),SSL_CTRL_CLEAR_OPTIONS,(op),NULL) #define SSL_get_options(ssl) SSL_ctrl((ssl),SSL_CTRL_OPTIONS,0,NULL) #define SSL_CTX_set_mode(ctx,op) SSL_CTX_ctrl((ctx),SSL_CTRL_MODE,(op),NULL) #define SSL_CTX_clear_mode(ctx,op) SSL_CTX_ctrl((ctx),SSL_CTRL_CLEAR_MODE,(op),NULL) #define SSL_CTX_get_mode(ctx) SSL_CTX_ctrl((ctx),SSL_CTRL_MODE,0,NULL) #define SSL_clear_mode(ssl,op) SSL_ctrl((ssl),SSL_CTRL_CLEAR_MODE,(op),NULL) #define SSL_set_mode(ssl,op) SSL_ctrl((ssl),SSL_CTRL_MODE,(op),NULL) #define SSL_get_mode(ssl) SSL_ctrl((ssl),SSL_CTRL_MODE,0,NULL) #define SSL_set_mtu(ssl,mtu) SSL_ctrl((ssl),SSL_CTRL_SET_MTU,(mtu),NULL) #define SSL_get_secure_renegotiation_support(ssl) SSL_ctrl((ssl), SSL_CTRL_GET_RI_SUPPORT, 0, NULL) #define SSL_heartbeat(ssl) SSL_ctrl((ssl),SSL_CTRL_TLS_EXT_SEND_HEARTBEAT,0,NULL) void SSL_CTX_set_msg_callback(SSL_CTX *ctx, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)); void SSL_set_msg_callback(SSL *ssl, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)); #define SSL_CTX_set_msg_callback_arg(ctx,arg) SSL_CTX_ctrl((ctx), SSL_CTRL_SET_MSG_CALLBACK_ARG, 0, (arg)) #define SSL_set_msg_callback_arg(ssl,arg) SSL_ctrl((ssl), SSL_CTRL_SET_MSG_CALLBACK_ARG, 0, (arg)) typedef struct srp_ctx_st { void *SRP_cb_arg; int (*TLS_ext_srp_username_callback)(SSL *, int *, void *); int (*SRP_verify_param_callback)(SSL *, void *); char *(*SRP_give_srp_client_pwd_callback)(SSL *, void *); char *login; BIGNUM *N,*g,*s,*B,*A; BIGNUM *a,*b,*v; char *info; int strength; unsigned long srp_Mask; } SRP_CTX; int SSL_SRP_CTX_init(SSL *s); int SSL_CTX_SRP_CTX_init(SSL_CTX *ctx); int SSL_SRP_CTX_free(SSL *ctx); int SSL_CTX_SRP_CTX_free(SSL_CTX *ctx); int SSL_srp_server_param_with_username(SSL *s, int *ad); int SRP_generate_server_master_secret(SSL *s,unsigned char *master_key); int SRP_Calc_A_param(SSL *s); int SRP_generate_client_master_secret(SSL *s,unsigned char *master_key); #define SSL_MAX_CERT_LIST_DEFAULT 1024*100 #define SSL_SESSION_CACHE_MAX_SIZE_DEFAULT (1024*20) # 750 "/usr/include/openssl/ssl.h" 3 4 typedef int (*GEN_SESSION_CB)(const SSL *ssl, unsigned char *id, unsigned int *id_len); typedef struct ssl_comp_st SSL_COMP; struct ssl_comp_st { int id; const char *name; COMP_METHOD *method; }; struct stack_st_SSL_COMP { _STACK stack; }; struct lhash_st_SSL_SESSION { int dummy; }; struct ssl_ctx_st { const SSL_METHOD *method; struct stack_st_SSL_CIPHER *cipher_list; struct stack_st_SSL_CIPHER *cipher_list_by_id; struct x509_store_st *cert_store; struct lhash_st_SSL_SESSION *sessions; unsigned long session_cache_size; struct ssl_session_st *session_cache_head; struct ssl_session_st *session_cache_tail; int session_cache_mode; long session_timeout; # 807 "/usr/include/openssl/ssl.h" 3 4 int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess); void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess); SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy); struct { int sess_connect; int sess_connect_renegotiate; int sess_connect_good; int sess_accept; int sess_accept_renegotiate; int sess_accept_good; int sess_miss; int sess_timeout; int sess_cache_full; int sess_hit; int sess_cb_hit; } stats; int references; int (*app_verify_callback)(X509_STORE_CTX *, void *); void *app_verify_arg; pem_password_cb *default_passwd_callback; void *default_passwd_callback_userdata; int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey); int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len); int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len); CRYPTO_EX_DATA ex_data; const EVP_MD *rsa_md5; const EVP_MD *md5; const EVP_MD *sha1; struct stack_st_X509 *extra_certs; struct stack_st_SSL_COMP *comp_methods; void (*info_callback)(const SSL *ssl,int type,int val); struct stack_st_X509_NAME *client_CA; unsigned long options; unsigned long mode; long max_cert_list; struct cert_st *cert; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg); void *msg_callback_arg; int verify_mode; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; int (*default_verify_callback)(int ok,X509_STORE_CTX *ctx); GEN_SESSION_CB generate_session_id; X509_VERIFY_PARAM *param; int quiet_shutdown; unsigned int max_send_fragment; ENGINE *client_cert_engine; int (*tlsext_servername_callback)(SSL*, int *, void *); void *tlsext_servername_arg; unsigned char tlsext_tick_key_name[16]; unsigned char tlsext_tick_hmac_key[16]; unsigned char tlsext_tick_aes_key[16]; int (*tlsext_ticket_key_cb)(SSL *ssl, unsigned char *name, unsigned char *iv, EVP_CIPHER_CTX *ectx, HMAC_CTX *hctx, int enc); int (*tlsext_status_cb)(SSL *ssl, void *arg); void *tlsext_status_arg; int (*tlsext_opaque_prf_input_callback)(SSL *, void *peerinput, size_t len, void *arg); void *tlsext_opaque_prf_input_callback_arg; char *psk_identity_hint; unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len); unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len); #define SSL_MAX_BUF_FREELIST_LEN_DEFAULT 32 unsigned int freelist_max_len; struct ssl3_buf_freelist_st *wbuf_freelist; struct ssl3_buf_freelist_st *rbuf_freelist; SRP_CTX srp_ctx; # 966 "/usr/include/openssl/ssl.h" 3 4 int (*next_protos_advertised_cb)(SSL *s, const unsigned char **buf, unsigned int *len, void *arg); void *next_protos_advertised_cb_arg; int (*next_proto_select_cb)(SSL *s, unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, void *arg); void *next_proto_select_cb_arg; struct stack_st_SRTP_PROTECTION_PROFILE *srtp_profiles; }; #define SSL_SESS_CACHE_OFF 0x0000 #define SSL_SESS_CACHE_CLIENT 0x0001 #define SSL_SESS_CACHE_SERVER 0x0002 #define SSL_SESS_CACHE_BOTH (SSL_SESS_CACHE_CLIENT|SSL_SESS_CACHE_SERVER) #define SSL_SESS_CACHE_NO_AUTO_CLEAR 0x0080 #define SSL_SESS_CACHE_NO_INTERNAL_LOOKUP 0x0100 #define SSL_SESS_CACHE_NO_INTERNAL_STORE 0x0200 #define SSL_SESS_CACHE_NO_INTERNAL (SSL_SESS_CACHE_NO_INTERNAL_LOOKUP|SSL_SESS_CACHE_NO_INTERNAL_STORE) struct lhash_st_SSL_SESSION *SSL_CTX_sessions(SSL_CTX *ctx); #define SSL_CTX_sess_number(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_NUMBER,0,NULL) #define SSL_CTX_sess_connect(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_CONNECT,0,NULL) #define SSL_CTX_sess_connect_good(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_CONNECT_GOOD,0,NULL) #define SSL_CTX_sess_connect_renegotiate(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_CONNECT_RENEGOTIATE,0,NULL) #define SSL_CTX_sess_accept(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_ACCEPT,0,NULL) #define SSL_CTX_sess_accept_renegotiate(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_ACCEPT_RENEGOTIATE,0,NULL) #define SSL_CTX_sess_accept_good(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_ACCEPT_GOOD,0,NULL) #define SSL_CTX_sess_hits(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_HIT,0,NULL) #define SSL_CTX_sess_cb_hits(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_CB_HIT,0,NULL) #define SSL_CTX_sess_misses(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_MISSES,0,NULL) #define SSL_CTX_sess_timeouts(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_TIMEOUTS,0,NULL) #define SSL_CTX_sess_cache_full(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_SESS_CACHE_FULL,0,NULL) void SSL_CTX_sess_set_new_cb(SSL_CTX *ctx, int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess)); int (*SSL_CTX_sess_get_new_cb(SSL_CTX *ctx))(struct ssl_st *ssl, SSL_SESSION *sess); void SSL_CTX_sess_set_remove_cb(SSL_CTX *ctx, void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess)); void (*SSL_CTX_sess_get_remove_cb(SSL_CTX *ctx))(struct ssl_ctx_st *ctx, SSL_SESSION *sess); void SSL_CTX_sess_set_get_cb(SSL_CTX *ctx, SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy)); SSL_SESSION *(*SSL_CTX_sess_get_get_cb(SSL_CTX *ctx))(struct ssl_st *ssl, unsigned char *Data, int len, int *copy); void SSL_CTX_set_info_callback(SSL_CTX *ctx, void (*cb)(const SSL *ssl,int type,int val)); void (*SSL_CTX_get_info_callback(SSL_CTX *ctx))(const SSL *ssl,int type,int val); void SSL_CTX_set_client_cert_cb(SSL_CTX *ctx, int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey)); int (*SSL_CTX_get_client_cert_cb(SSL_CTX *ctx))(SSL *ssl, X509 **x509, EVP_PKEY **pkey); int SSL_CTX_set_client_cert_engine(SSL_CTX *ctx, ENGINE *e); void SSL_CTX_set_cookie_generate_cb(SSL_CTX *ctx, int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len)); void SSL_CTX_set_cookie_verify_cb(SSL_CTX *ctx, int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len)); void SSL_CTX_set_next_protos_advertised_cb(SSL_CTX *s, int (*cb) (SSL *ssl, const unsigned char **out, unsigned int *outlen, void *arg), void *arg); void SSL_CTX_set_next_proto_select_cb(SSL_CTX *s, int (*cb) (SSL *ssl, unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, void *arg), void *arg); int SSL_select_next_proto(unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, const unsigned char *client, unsigned int client_len); void SSL_get0_next_proto_negotiated(const SSL *s, const unsigned char **data, unsigned *len); #define OPENSSL_NPN_UNSUPPORTED 0 #define OPENSSL_NPN_NEGOTIATED 1 #define OPENSSL_NPN_NO_OVERLAP 2 #define PSK_MAX_IDENTITY_LEN 128 #define PSK_MAX_PSK_LEN 256 void SSL_CTX_set_psk_client_callback(SSL_CTX *ctx, unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len)); void SSL_set_psk_client_callback(SSL *ssl, unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len)); void SSL_CTX_set_psk_server_callback(SSL_CTX *ctx, unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len)); void SSL_set_psk_server_callback(SSL *ssl, unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len)); int SSL_CTX_use_psk_identity_hint(SSL_CTX *ctx, const char *identity_hint); int SSL_use_psk_identity_hint(SSL *s, const char *identity_hint); const char *SSL_get_psk_identity_hint(const SSL *s); const char *SSL_get_psk_identity(const SSL *s); #define SSL_NOTHING 1 #define SSL_WRITING 2 #define SSL_READING 3 #define SSL_X509_LOOKUP 4 #define SSL_want_nothing(s) (SSL_want(s) == SSL_NOTHING) #define SSL_want_read(s) (SSL_want(s) == SSL_READING) #define SSL_want_write(s) (SSL_want(s) == SSL_WRITING) #define SSL_want_x509_lookup(s) (SSL_want(s) == SSL_X509_LOOKUP) #define SSL_MAC_FLAG_READ_MAC_STREAM 1 #define SSL_MAC_FLAG_WRITE_MAC_STREAM 2 struct ssl_st { int version; int type; const SSL_METHOD *method; BIO *rbio; BIO *wbio; BIO *bbio; # 1133 "/usr/include/openssl/ssl.h" 3 4 int rwstate; int in_handshake; int (*handshake_func)(SSL *); # 1147 "/usr/include/openssl/ssl.h" 3 4 int server; int new_session; int quiet_shutdown; int shutdown; int state; int rstate; BUF_MEM *init_buf; void *init_msg; int init_num; int init_off; unsigned char *packet; unsigned int packet_length; struct ssl2_state_st *s2; struct ssl3_state_st *s3; struct dtls1_state_st *d1; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg); void *msg_callback_arg; int hit; X509_VERIFY_PARAM *param; struct stack_st_SSL_CIPHER *cipher_list; struct stack_st_SSL_CIPHER *cipher_list_by_id; int mac_flags; EVP_CIPHER_CTX *enc_read_ctx; EVP_MD_CTX *read_hash; COMP_CTX *expand; EVP_CIPHER_CTX *enc_write_ctx; EVP_MD_CTX *write_hash; COMP_CTX *compress; # 1215 "/usr/include/openssl/ssl.h" 3 4 struct cert_st *cert; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; SSL_SESSION *session; GEN_SESSION_CB generate_session_id; int verify_mode; int (*verify_callback)(int ok,X509_STORE_CTX *ctx); void (*info_callback)(const SSL *ssl,int type,int val); int error; int error_code; unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len); unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len); SSL_CTX *ctx; int debug; long verify_result; CRYPTO_EX_DATA ex_data; struct stack_st_X509_NAME *client_CA; int references; unsigned long options; unsigned long mode; long max_cert_list; int first_packet; int client_version; unsigned int max_send_fragment; void (*tlsext_debug_cb)(SSL *s, int client_server, int type, unsigned char *data, int len, void *arg); void *tlsext_debug_arg; char *tlsext_hostname; int servername_done; int tlsext_status_type; int tlsext_status_expected; struct stack_st_OCSP_RESPID *tlsext_ocsp_ids; X509_EXTENSIONS *tlsext_ocsp_exts; unsigned char *tlsext_ocsp_resp; int tlsext_ocsp_resplen; int tlsext_ticket_expected; size_t tlsext_ecpointformatlist_length; unsigned char *tlsext_ecpointformatlist; size_t tlsext_ellipticcurvelist_length; unsigned char *tlsext_ellipticcurvelist; void *tlsext_opaque_prf_input; size_t tlsext_opaque_prf_input_len; TLS_SESSION_TICKET_EXT *tlsext_session_ticket; tls_session_ticket_ext_cb_fn tls_session_ticket_ext_cb; void *tls_session_ticket_ext_cb_arg; tls_session_secret_cb_fn tls_session_secret_cb; void *tls_session_secret_cb_arg; SSL_CTX * initial_ctx; # 1328 "/usr/include/openssl/ssl.h" 3 4 unsigned char *next_proto_negotiated; unsigned char next_proto_negotiated_len; #define session_ctx initial_ctx struct stack_st_SRTP_PROTECTION_PROFILE *srtp_profiles; SRTP_PROTECTION_PROFILE *srtp_profile; unsigned int tlsext_heartbeat; unsigned int tlsext_hb_pending; unsigned int tlsext_hb_seq; int renegotiate; SRP_CTX srp_ctx; }; # 1 "/usr/include/openssl/ssl2.h" 1 3 4 # 60 "/usr/include/openssl/ssl2.h" 3 4 #define HEADER_SSL2_H #define SSL2_VERSION 0x0002 #define SSL2_VERSION_MAJOR 0x00 #define SSL2_VERSION_MINOR 0x02 #define SSL2_MT_ERROR 0 #define SSL2_MT_CLIENT_HELLO 1 #define SSL2_MT_CLIENT_MASTER_KEY 2 #define SSL2_MT_CLIENT_FINISHED 3 #define SSL2_MT_SERVER_HELLO 4 #define SSL2_MT_SERVER_VERIFY 5 #define SSL2_MT_SERVER_FINISHED 6 #define SSL2_MT_REQUEST_CERTIFICATE 7 #define SSL2_MT_CLIENT_CERTIFICATE 8 #define SSL2_PE_UNDEFINED_ERROR 0x0000 #define SSL2_PE_NO_CIPHER 0x0001 #define SSL2_PE_NO_CERTIFICATE 0x0002 #define SSL2_PE_BAD_CERTIFICATE 0x0004 #define SSL2_PE_UNSUPPORTED_CERTIFICATE_TYPE 0x0006 #define SSL2_CK_NULL_WITH_MD5 0x02000000 #define SSL2_CK_RC4_128_WITH_MD5 0x02010080 #define SSL2_CK_RC4_128_EXPORT40_WITH_MD5 0x02020080 #define SSL2_CK_RC2_128_CBC_WITH_MD5 0x02030080 #define SSL2_CK_RC2_128_CBC_EXPORT40_WITH_MD5 0x02040080 #define SSL2_CK_IDEA_128_CBC_WITH_MD5 0x02050080 #define SSL2_CK_DES_64_CBC_WITH_MD5 0x02060040 #define SSL2_CK_DES_64_CBC_WITH_SHA 0x02060140 #define SSL2_CK_DES_192_EDE3_CBC_WITH_MD5 0x020700c0 #define SSL2_CK_DES_192_EDE3_CBC_WITH_SHA 0x020701c0 #define SSL2_CK_RC4_64_WITH_MD5 0x02080080 #define SSL2_CK_DES_64_CFB64_WITH_MD5_1 0x02ff0800 #define SSL2_CK_NULL 0x02ff0810 #define SSL2_TXT_DES_64_CFB64_WITH_MD5_1 "DES-CFB-M1" #define SSL2_TXT_NULL_WITH_MD5 "NULL-MD5" #define SSL2_TXT_RC4_128_WITH_MD5 "RC4-MD5" #define SSL2_TXT_RC4_128_EXPORT40_WITH_MD5 "EXP-RC4-MD5" #define SSL2_TXT_RC2_128_CBC_WITH_MD5 "RC2-CBC-MD5" #define SSL2_TXT_RC2_128_CBC_EXPORT40_WITH_MD5 "EXP-RC2-CBC-MD5" #define SSL2_TXT_IDEA_128_CBC_WITH_MD5 "IDEA-CBC-MD5" #define SSL2_TXT_DES_64_CBC_WITH_MD5 "DES-CBC-MD5" #define SSL2_TXT_DES_64_CBC_WITH_SHA "DES-CBC-SHA" #define SSL2_TXT_DES_192_EDE3_CBC_WITH_MD5 "DES-CBC3-MD5" #define SSL2_TXT_DES_192_EDE3_CBC_WITH_SHA "DES-CBC3-SHA" #define SSL2_TXT_RC4_64_WITH_MD5 "RC4-64-MD5" #define SSL2_TXT_NULL "NULL" #define SSL2_CF_5_BYTE_ENC 0x01 #define SSL2_CF_8_BYTE_ENC 0x02 #define SSL2_CT_X509_CERTIFICATE 0x01 #define SSL2_AT_MD5_WITH_RSA_ENCRYPTION 0x01 #define SSL2_MAX_SSL_SESSION_ID_LENGTH 32 #define SSL2_MAX_MASTER_KEY_LENGTH_IN_BITS 256 #define SSL2_MAX_RECORD_LENGTH_2_BYTE_HEADER 32767u #define SSL2_MAX_RECORD_LENGTH_3_BYTE_HEADER 16383 #define SSL2_CHALLENGE_LENGTH 16 #define SSL2_MIN_CHALLENGE_LENGTH 16 #define SSL2_MAX_CHALLENGE_LENGTH 32 #define SSL2_CONNECTION_ID_LENGTH 16 #define SSL2_MAX_CONNECTION_ID_LENGTH 16 #define SSL2_SSL_SESSION_ID_LENGTH 16 #define SSL2_MAX_CERT_CHALLENGE_LENGTH 32 #define SSL2_MIN_CERT_CHALLENGE_LENGTH 16 #define SSL2_MAX_KEY_MATERIAL_LENGTH 24 #define CERT char typedef struct ssl2_state_st { int three_byte_header; int clear_text; int escape; int ssl2_rollback; unsigned int wnum; int wpend_tot; const unsigned char *wpend_buf; int wpend_off; int wpend_len; int wpend_ret; int rbuf_left; int rbuf_offs; unsigned char *rbuf; unsigned char *wbuf; unsigned char *write_ptr; unsigned int padding; unsigned int rlength; int ract_data_length; unsigned int wlength; int wact_data_length; unsigned char *ract_data; unsigned char *wact_data; unsigned char *mac_data; unsigned char *read_key; unsigned char *write_key; unsigned int challenge_length; unsigned char challenge[32]; unsigned int conn_id_length; unsigned char conn_id[16]; unsigned int key_material_length; unsigned char key_material[24*2]; unsigned long read_sequence; unsigned long write_sequence; struct { unsigned int conn_id_length; unsigned int cert_type; unsigned int cert_length; unsigned int csl; unsigned int clear; unsigned int enc; unsigned char ccl[32]; unsigned int cipher_spec_length; unsigned int session_id_length; unsigned int clen; unsigned int rlen; } tmp; } SSL2_STATE; #define SSL2_ST_SEND_CLIENT_HELLO_A (0x10|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_HELLO_B (0x11|SSL_ST_CONNECT) #define SSL2_ST_GET_SERVER_HELLO_A (0x20|SSL_ST_CONNECT) #define SSL2_ST_GET_SERVER_HELLO_B (0x21|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_MASTER_KEY_A (0x30|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_MASTER_KEY_B (0x31|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_FINISHED_A (0x40|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_FINISHED_B (0x41|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_CERTIFICATE_A (0x50|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_CERTIFICATE_B (0x51|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_CERTIFICATE_C (0x52|SSL_ST_CONNECT) #define SSL2_ST_SEND_CLIENT_CERTIFICATE_D (0x53|SSL_ST_CONNECT) #define SSL2_ST_GET_SERVER_VERIFY_A (0x60|SSL_ST_CONNECT) #define SSL2_ST_GET_SERVER_VERIFY_B (0x61|SSL_ST_CONNECT) #define SSL2_ST_GET_SERVER_FINISHED_A (0x70|SSL_ST_CONNECT) #define SSL2_ST_GET_SERVER_FINISHED_B (0x71|SSL_ST_CONNECT) #define SSL2_ST_CLIENT_START_ENCRYPTION (0x80|SSL_ST_CONNECT) #define SSL2_ST_X509_GET_CLIENT_CERTIFICATE (0x90|SSL_ST_CONNECT) #define SSL2_ST_GET_CLIENT_HELLO_A (0x10|SSL_ST_ACCEPT) #define SSL2_ST_GET_CLIENT_HELLO_B (0x11|SSL_ST_ACCEPT) #define SSL2_ST_GET_CLIENT_HELLO_C (0x12|SSL_ST_ACCEPT) #define SSL2_ST_SEND_SERVER_HELLO_A (0x20|SSL_ST_ACCEPT) #define SSL2_ST_SEND_SERVER_HELLO_B (0x21|SSL_ST_ACCEPT) #define SSL2_ST_GET_CLIENT_MASTER_KEY_A (0x30|SSL_ST_ACCEPT) #define SSL2_ST_GET_CLIENT_MASTER_KEY_B (0x31|SSL_ST_ACCEPT) #define SSL2_ST_SEND_SERVER_VERIFY_A (0x40|SSL_ST_ACCEPT) #define SSL2_ST_SEND_SERVER_VERIFY_B (0x41|SSL_ST_ACCEPT) #define SSL2_ST_SEND_SERVER_VERIFY_C (0x42|SSL_ST_ACCEPT) #define SSL2_ST_GET_CLIENT_FINISHED_A (0x50|SSL_ST_ACCEPT) #define SSL2_ST_GET_CLIENT_FINISHED_B (0x51|SSL_ST_ACCEPT) #define SSL2_ST_SEND_SERVER_FINISHED_A (0x60|SSL_ST_ACCEPT) #define SSL2_ST_SEND_SERVER_FINISHED_B (0x61|SSL_ST_ACCEPT) #define SSL2_ST_SEND_REQUEST_CERTIFICATE_A (0x70|SSL_ST_ACCEPT) #define SSL2_ST_SEND_REQUEST_CERTIFICATE_B (0x71|SSL_ST_ACCEPT) #define SSL2_ST_SEND_REQUEST_CERTIFICATE_C (0x72|SSL_ST_ACCEPT) #define SSL2_ST_SEND_REQUEST_CERTIFICATE_D (0x73|SSL_ST_ACCEPT) #define SSL2_ST_SERVER_START_ENCRYPTION (0x80|SSL_ST_ACCEPT) #define SSL2_ST_X509_GET_SERVER_CERTIFICATE (0x90|SSL_ST_ACCEPT) # 1364 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/ssl3.h" 1 3 4 # 118 "/usr/include/openssl/ssl3.h" 3 4 #define HEADER_SSL3_H # 1 "/usr/include/openssl/ssl.h" 1 3 4 # 126 "/usr/include/openssl/ssl3.h" 2 3 4 #define SSL3_CK_SCSV 0x030000FF #define SSL3_CK_FALLBACK_SCSV 0x03005600 #define SSL3_CK_RSA_NULL_MD5 0x03000001 #define SSL3_CK_RSA_NULL_SHA 0x03000002 #define SSL3_CK_RSA_RC4_40_MD5 0x03000003 #define SSL3_CK_RSA_RC4_128_MD5 0x03000004 #define SSL3_CK_RSA_RC4_128_SHA 0x03000005 #define SSL3_CK_RSA_RC2_40_MD5 0x03000006 #define SSL3_CK_RSA_IDEA_128_SHA 0x03000007 #define SSL3_CK_RSA_DES_40_CBC_SHA 0x03000008 #define SSL3_CK_RSA_DES_64_CBC_SHA 0x03000009 #define SSL3_CK_RSA_DES_192_CBC3_SHA 0x0300000A #define SSL3_CK_DH_DSS_DES_40_CBC_SHA 0x0300000B #define SSL3_CK_DH_DSS_DES_64_CBC_SHA 0x0300000C #define SSL3_CK_DH_DSS_DES_192_CBC3_SHA 0x0300000D #define SSL3_CK_DH_RSA_DES_40_CBC_SHA 0x0300000E #define SSL3_CK_DH_RSA_DES_64_CBC_SHA 0x0300000F #define SSL3_CK_DH_RSA_DES_192_CBC3_SHA 0x03000010 #define SSL3_CK_EDH_DSS_DES_40_CBC_SHA 0x03000011 #define SSL3_CK_EDH_DSS_DES_64_CBC_SHA 0x03000012 #define SSL3_CK_EDH_DSS_DES_192_CBC3_SHA 0x03000013 #define SSL3_CK_EDH_RSA_DES_40_CBC_SHA 0x03000014 #define SSL3_CK_EDH_RSA_DES_64_CBC_SHA 0x03000015 #define SSL3_CK_EDH_RSA_DES_192_CBC3_SHA 0x03000016 #define SSL3_CK_ADH_RC4_40_MD5 0x03000017 #define SSL3_CK_ADH_RC4_128_MD5 0x03000018 #define SSL3_CK_ADH_DES_40_CBC_SHA 0x03000019 #define SSL3_CK_ADH_DES_64_CBC_SHA 0x0300001A #define SSL3_CK_ADH_DES_192_CBC_SHA 0x0300001B # 182 "/usr/include/openssl/ssl3.h" 3 4 #define SSL3_CK_KRB5_DES_64_CBC_SHA 0x0300001E #define SSL3_CK_KRB5_DES_192_CBC3_SHA 0x0300001F #define SSL3_CK_KRB5_RC4_128_SHA 0x03000020 #define SSL3_CK_KRB5_IDEA_128_CBC_SHA 0x03000021 #define SSL3_CK_KRB5_DES_64_CBC_MD5 0x03000022 #define SSL3_CK_KRB5_DES_192_CBC3_MD5 0x03000023 #define SSL3_CK_KRB5_RC4_128_MD5 0x03000024 #define SSL3_CK_KRB5_IDEA_128_CBC_MD5 0x03000025 #define SSL3_CK_KRB5_DES_40_CBC_SHA 0x03000026 #define SSL3_CK_KRB5_RC2_40_CBC_SHA 0x03000027 #define SSL3_CK_KRB5_RC4_40_SHA 0x03000028 #define SSL3_CK_KRB5_DES_40_CBC_MD5 0x03000029 #define SSL3_CK_KRB5_RC2_40_CBC_MD5 0x0300002A #define SSL3_CK_KRB5_RC4_40_MD5 0x0300002B #define SSL3_TXT_RSA_NULL_MD5 "NULL-MD5" #define SSL3_TXT_RSA_NULL_SHA "NULL-SHA" #define SSL3_TXT_RSA_RC4_40_MD5 "EXP-RC4-MD5" #define SSL3_TXT_RSA_RC4_128_MD5 "RC4-MD5" #define SSL3_TXT_RSA_RC4_128_SHA "RC4-SHA" #define SSL3_TXT_RSA_RC2_40_MD5 "EXP-RC2-CBC-MD5" #define SSL3_TXT_RSA_IDEA_128_SHA "IDEA-CBC-SHA" #define SSL3_TXT_RSA_DES_40_CBC_SHA "EXP-DES-CBC-SHA" #define SSL3_TXT_RSA_DES_64_CBC_SHA "DES-CBC-SHA" #define SSL3_TXT_RSA_DES_192_CBC3_SHA "DES-CBC3-SHA" #define SSL3_TXT_DH_DSS_DES_40_CBC_SHA "EXP-DH-DSS-DES-CBC-SHA" #define SSL3_TXT_DH_DSS_DES_64_CBC_SHA "DH-DSS-DES-CBC-SHA" #define SSL3_TXT_DH_DSS_DES_192_CBC3_SHA "DH-DSS-DES-CBC3-SHA" #define SSL3_TXT_DH_RSA_DES_40_CBC_SHA "EXP-DH-RSA-DES-CBC-SHA" #define SSL3_TXT_DH_RSA_DES_64_CBC_SHA "DH-RSA-DES-CBC-SHA" #define SSL3_TXT_DH_RSA_DES_192_CBC3_SHA "DH-RSA-DES-CBC3-SHA" #define SSL3_TXT_EDH_DSS_DES_40_CBC_SHA "EXP-EDH-DSS-DES-CBC-SHA" #define SSL3_TXT_EDH_DSS_DES_64_CBC_SHA "EDH-DSS-DES-CBC-SHA" #define SSL3_TXT_EDH_DSS_DES_192_CBC3_SHA "EDH-DSS-DES-CBC3-SHA" #define SSL3_TXT_EDH_RSA_DES_40_CBC_SHA "EXP-EDH-RSA-DES-CBC-SHA" #define SSL3_TXT_EDH_RSA_DES_64_CBC_SHA "EDH-RSA-DES-CBC-SHA" #define SSL3_TXT_EDH_RSA_DES_192_CBC3_SHA "EDH-RSA-DES-CBC3-SHA" #define SSL3_TXT_ADH_RC4_40_MD5 "EXP-ADH-RC4-MD5" #define SSL3_TXT_ADH_RC4_128_MD5 "ADH-RC4-MD5" #define SSL3_TXT_ADH_DES_40_CBC_SHA "EXP-ADH-DES-CBC-SHA" #define SSL3_TXT_ADH_DES_64_CBC_SHA "ADH-DES-CBC-SHA" #define SSL3_TXT_ADH_DES_192_CBC_SHA "ADH-DES-CBC3-SHA" #define SSL3_TXT_KRB5_DES_64_CBC_SHA "KRB5-DES-CBC-SHA" #define SSL3_TXT_KRB5_DES_192_CBC3_SHA "KRB5-DES-CBC3-SHA" #define SSL3_TXT_KRB5_RC4_128_SHA "KRB5-RC4-SHA" #define SSL3_TXT_KRB5_IDEA_128_CBC_SHA "KRB5-IDEA-CBC-SHA" #define SSL3_TXT_KRB5_DES_64_CBC_MD5 "KRB5-DES-CBC-MD5" #define SSL3_TXT_KRB5_DES_192_CBC3_MD5 "KRB5-DES-CBC3-MD5" #define SSL3_TXT_KRB5_RC4_128_MD5 "KRB5-RC4-MD5" #define SSL3_TXT_KRB5_IDEA_128_CBC_MD5 "KRB5-IDEA-CBC-MD5" #define SSL3_TXT_KRB5_DES_40_CBC_SHA "EXP-KRB5-DES-CBC-SHA" #define SSL3_TXT_KRB5_RC2_40_CBC_SHA "EXP-KRB5-RC2-CBC-SHA" #define SSL3_TXT_KRB5_RC4_40_SHA "EXP-KRB5-RC4-SHA" #define SSL3_TXT_KRB5_DES_40_CBC_MD5 "EXP-KRB5-DES-CBC-MD5" #define SSL3_TXT_KRB5_RC2_40_CBC_MD5 "EXP-KRB5-RC2-CBC-MD5" #define SSL3_TXT_KRB5_RC4_40_MD5 "EXP-KRB5-RC4-MD5" #define SSL3_SSL_SESSION_ID_LENGTH 32 #define SSL3_MAX_SSL_SESSION_ID_LENGTH 32 #define SSL3_MASTER_SECRET_SIZE 48 #define SSL3_RANDOM_SIZE 32 #define SSL3_SESSION_ID_SIZE 32 #define SSL3_RT_HEADER_LENGTH 5 # 266 "/usr/include/openssl/ssl3.h" 3 4 #define SSL3_ALIGN_PAYLOAD 8 # 279 "/usr/include/openssl/ssl3.h" 3 4 #define SSL3_RT_MAX_MD_SIZE 64 #define SSL_RT_MAX_CIPHER_BLOCK_SIZE 16 #define SSL3_RT_MAX_EXTRA (16384) #define SSL3_RT_MAX_PLAIN_LENGTH 16384 #define SSL3_RT_MAX_COMPRESSED_OVERHEAD 1024 #define SSL3_RT_MAX_ENCRYPTED_OVERHEAD (256 + SSL3_RT_MAX_MD_SIZE) #define SSL3_RT_SEND_MAX_ENCRYPTED_OVERHEAD (SSL_RT_MAX_CIPHER_BLOCK_SIZE + SSL3_RT_MAX_MD_SIZE) #define SSL3_RT_MAX_COMPRESSED_LENGTH (SSL3_RT_MAX_PLAIN_LENGTH+SSL3_RT_MAX_COMPRESSED_OVERHEAD) #define SSL3_RT_MAX_ENCRYPTED_LENGTH (SSL3_RT_MAX_ENCRYPTED_OVERHEAD+SSL3_RT_MAX_COMPRESSED_LENGTH) #define SSL3_RT_MAX_PACKET_SIZE (SSL3_RT_MAX_ENCRYPTED_LENGTH+SSL3_RT_HEADER_LENGTH) #define SSL3_MD_CLIENT_FINISHED_CONST "\x43\x4C\x4E\x54" #define SSL3_MD_SERVER_FINISHED_CONST "\x53\x52\x56\x52" #define SSL3_VERSION 0x0300 #define SSL3_VERSION_MAJOR 0x03 #define SSL3_VERSION_MINOR 0x00 #define SSL3_RT_CHANGE_CIPHER_SPEC 20 #define SSL3_RT_ALERT 21 #define SSL3_RT_HANDSHAKE 22 #define SSL3_RT_APPLICATION_DATA 23 #define TLS1_RT_HEARTBEAT 24 #define SSL3_AL_WARNING 1 #define SSL3_AL_FATAL 2 #define SSL3_AD_CLOSE_NOTIFY 0 #define SSL3_AD_UNEXPECTED_MESSAGE 10 #define SSL3_AD_BAD_RECORD_MAC 20 #define SSL3_AD_DECOMPRESSION_FAILURE 30 #define SSL3_AD_HANDSHAKE_FAILURE 40 #define SSL3_AD_NO_CERTIFICATE 41 #define SSL3_AD_BAD_CERTIFICATE 42 #define SSL3_AD_UNSUPPORTED_CERTIFICATE 43 #define SSL3_AD_CERTIFICATE_REVOKED 44 #define SSL3_AD_CERTIFICATE_EXPIRED 45 #define SSL3_AD_CERTIFICATE_UNKNOWN 46 #define SSL3_AD_ILLEGAL_PARAMETER 47 #define TLS1_HB_REQUEST 1 #define TLS1_HB_RESPONSE 2 typedef struct ssl3_record_st { int type; unsigned int length; unsigned int off; unsigned char *data; unsigned char *input; unsigned char *comp; unsigned long epoch; unsigned char seq_num[8]; } SSL3_RECORD; typedef struct ssl3_buffer_st { unsigned char *buf; size_t len; int offset; int left; } SSL3_BUFFER; #define SSL3_CT_RSA_SIGN 1 #define SSL3_CT_DSS_SIGN 2 #define SSL3_CT_RSA_FIXED_DH 3 #define SSL3_CT_DSS_FIXED_DH 4 #define SSL3_CT_RSA_EPHEMERAL_DH 5 #define SSL3_CT_DSS_EPHEMERAL_DH 6 #define SSL3_CT_FORTEZZA_DMS 20 #define SSL3_CT_NUMBER 9 #define SSL3_FLAGS_NO_RENEGOTIATE_CIPHERS 0x0001 #define SSL3_FLAGS_DELAY_CLIENT_FINISHED 0x0002 #define SSL3_FLAGS_POP_BUFFER 0x0004 #define TLS1_FLAGS_TLS_PADDING_BUG 0x0008 #define TLS1_FLAGS_SKIP_CERT_VERIFY 0x0010 #define TLS1_FLAGS_KEEP_HANDSHAKE 0x0020 #define SSL3_FLAGS_CCS_OK 0x0080 # 407 "/usr/include/openssl/ssl3.h" 3 4 #define SSL3_FLAGS_SGC_RESTART_DONE 0x0040 typedef struct ssl3_state_st { long flags; int delay_buf_pop_ret; unsigned char read_sequence[8]; int read_mac_secret_size; unsigned char read_mac_secret[64]; unsigned char write_sequence[8]; int write_mac_secret_size; unsigned char write_mac_secret[64]; unsigned char server_random[32]; unsigned char client_random[32]; int need_empty_fragments; int empty_fragment_done; int init_extra; SSL3_BUFFER rbuf; SSL3_BUFFER wbuf; SSL3_RECORD rrec; SSL3_RECORD wrec; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[4]; unsigned int handshake_fragment_len; unsigned int wnum; int wpend_tot; int wpend_type; int wpend_ret; const unsigned char *wpend_buf; BIO *handshake_buffer; EVP_MD_CTX **handshake_dgst; int change_cipher_spec; int warn_alert; int fatal_alert; int alert_dispatch; unsigned char send_alert[2]; int renegotiate; int total_renegotiations; int num_renegotiations; int in_read_app_data; void *client_opaque_prf_input; size_t client_opaque_prf_input_len; void *server_opaque_prf_input; size_t server_opaque_prf_input_len; struct { unsigned char cert_verify_md[64*2]; unsigned char finish_md[64*2]; int finish_md_len; unsigned char peer_finish_md[64*2]; int peer_finish_md_len; unsigned long message_size; int message_type; const SSL_CIPHER *new_cipher; DH *dh; EC_KEY *ecdh; int next_state; int reuse_message; int cert_req; int ctype_num; char ctype[9]; struct stack_st_X509_NAME *ca_names; int use_rsa_tmp; int key_block_length; unsigned char *key_block; const EVP_CIPHER *new_sym_enc; const EVP_MD *new_hash; int new_mac_pkey_type; int new_mac_secret_size; const SSL_COMP *new_compression; int cert_request; } tmp; unsigned char previous_client_finished[64]; unsigned char previous_client_finished_len; unsigned char previous_server_finished[64]; unsigned char previous_server_finished_len; int send_connection_binding; int next_proto_neg_seen; } SSL3_STATE; #define SSL3_ST_CW_FLUSH (0x100|SSL_ST_CONNECT) #define SSL3_ST_CW_CLNT_HELLO_A (0x110|SSL_ST_CONNECT) #define SSL3_ST_CW_CLNT_HELLO_B (0x111|SSL_ST_CONNECT) #define SSL3_ST_CR_SRVR_HELLO_A (0x120|SSL_ST_CONNECT) #define SSL3_ST_CR_SRVR_HELLO_B (0x121|SSL_ST_CONNECT) #define DTLS1_ST_CR_HELLO_VERIFY_REQUEST_A (0x126|SSL_ST_CONNECT) #define DTLS1_ST_CR_HELLO_VERIFY_REQUEST_B (0x127|SSL_ST_CONNECT) #define SSL3_ST_CR_CERT_A (0x130|SSL_ST_CONNECT) #define SSL3_ST_CR_CERT_B (0x131|SSL_ST_CONNECT) #define SSL3_ST_CR_KEY_EXCH_A (0x140|SSL_ST_CONNECT) #define SSL3_ST_CR_KEY_EXCH_B (0x141|SSL_ST_CONNECT) #define SSL3_ST_CR_CERT_REQ_A (0x150|SSL_ST_CONNECT) #define SSL3_ST_CR_CERT_REQ_B (0x151|SSL_ST_CONNECT) #define SSL3_ST_CR_SRVR_DONE_A (0x160|SSL_ST_CONNECT) #define SSL3_ST_CR_SRVR_DONE_B (0x161|SSL_ST_CONNECT) #define SSL3_ST_CW_CERT_A (0x170|SSL_ST_CONNECT) #define SSL3_ST_CW_CERT_B (0x171|SSL_ST_CONNECT) #define SSL3_ST_CW_CERT_C (0x172|SSL_ST_CONNECT) #define SSL3_ST_CW_CERT_D (0x173|SSL_ST_CONNECT) #define SSL3_ST_CW_KEY_EXCH_A (0x180|SSL_ST_CONNECT) #define SSL3_ST_CW_KEY_EXCH_B (0x181|SSL_ST_CONNECT) #define SSL3_ST_CW_CERT_VRFY_A (0x190|SSL_ST_CONNECT) #define SSL3_ST_CW_CERT_VRFY_B (0x191|SSL_ST_CONNECT) #define SSL3_ST_CW_CHANGE_A (0x1A0|SSL_ST_CONNECT) #define SSL3_ST_CW_CHANGE_B (0x1A1|SSL_ST_CONNECT) #define SSL3_ST_CW_NEXT_PROTO_A (0x200|SSL_ST_CONNECT) #define SSL3_ST_CW_NEXT_PROTO_B (0x201|SSL_ST_CONNECT) #define SSL3_ST_CW_FINISHED_A (0x1B0|SSL_ST_CONNECT) #define SSL3_ST_CW_FINISHED_B (0x1B1|SSL_ST_CONNECT) #define SSL3_ST_CR_CHANGE_A (0x1C0|SSL_ST_CONNECT) #define SSL3_ST_CR_CHANGE_B (0x1C1|SSL_ST_CONNECT) #define SSL3_ST_CR_FINISHED_A (0x1D0|SSL_ST_CONNECT) #define SSL3_ST_CR_FINISHED_B (0x1D1|SSL_ST_CONNECT) #define SSL3_ST_CR_SESSION_TICKET_A (0x1E0|SSL_ST_CONNECT) #define SSL3_ST_CR_SESSION_TICKET_B (0x1E1|SSL_ST_CONNECT) #define SSL3_ST_CR_CERT_STATUS_A (0x1F0|SSL_ST_CONNECT) #define SSL3_ST_CR_CERT_STATUS_B (0x1F1|SSL_ST_CONNECT) #define SSL3_ST_SW_FLUSH (0x100|SSL_ST_ACCEPT) #define SSL3_ST_SR_CLNT_HELLO_A (0x110|SSL_ST_ACCEPT) #define SSL3_ST_SR_CLNT_HELLO_B (0x111|SSL_ST_ACCEPT) #define SSL3_ST_SR_CLNT_HELLO_C (0x112|SSL_ST_ACCEPT) #define DTLS1_ST_SW_HELLO_VERIFY_REQUEST_A (0x113|SSL_ST_ACCEPT) #define DTLS1_ST_SW_HELLO_VERIFY_REQUEST_B (0x114|SSL_ST_ACCEPT) #define SSL3_ST_SW_HELLO_REQ_A (0x120|SSL_ST_ACCEPT) #define SSL3_ST_SW_HELLO_REQ_B (0x121|SSL_ST_ACCEPT) #define SSL3_ST_SW_HELLO_REQ_C (0x122|SSL_ST_ACCEPT) #define SSL3_ST_SW_SRVR_HELLO_A (0x130|SSL_ST_ACCEPT) #define SSL3_ST_SW_SRVR_HELLO_B (0x131|SSL_ST_ACCEPT) #define SSL3_ST_SW_CERT_A (0x140|SSL_ST_ACCEPT) #define SSL3_ST_SW_CERT_B (0x141|SSL_ST_ACCEPT) #define SSL3_ST_SW_KEY_EXCH_A (0x150|SSL_ST_ACCEPT) #define SSL3_ST_SW_KEY_EXCH_B (0x151|SSL_ST_ACCEPT) #define SSL3_ST_SW_CERT_REQ_A (0x160|SSL_ST_ACCEPT) #define SSL3_ST_SW_CERT_REQ_B (0x161|SSL_ST_ACCEPT) #define SSL3_ST_SW_SRVR_DONE_A (0x170|SSL_ST_ACCEPT) #define SSL3_ST_SW_SRVR_DONE_B (0x171|SSL_ST_ACCEPT) #define SSL3_ST_SR_CERT_A (0x180|SSL_ST_ACCEPT) #define SSL3_ST_SR_CERT_B (0x181|SSL_ST_ACCEPT) #define SSL3_ST_SR_KEY_EXCH_A (0x190|SSL_ST_ACCEPT) #define SSL3_ST_SR_KEY_EXCH_B (0x191|SSL_ST_ACCEPT) #define SSL3_ST_SR_CERT_VRFY_A (0x1A0|SSL_ST_ACCEPT) #define SSL3_ST_SR_CERT_VRFY_B (0x1A1|SSL_ST_ACCEPT) #define SSL3_ST_SR_CHANGE_A (0x1B0|SSL_ST_ACCEPT) #define SSL3_ST_SR_CHANGE_B (0x1B1|SSL_ST_ACCEPT) #define SSL3_ST_SR_NEXT_PROTO_A (0x210|SSL_ST_ACCEPT) #define SSL3_ST_SR_NEXT_PROTO_B (0x211|SSL_ST_ACCEPT) #define SSL3_ST_SR_FINISHED_A (0x1C0|SSL_ST_ACCEPT) #define SSL3_ST_SR_FINISHED_B (0x1C1|SSL_ST_ACCEPT) #define SSL3_ST_SW_CHANGE_A (0x1D0|SSL_ST_ACCEPT) #define SSL3_ST_SW_CHANGE_B (0x1D1|SSL_ST_ACCEPT) #define SSL3_ST_SW_FINISHED_A (0x1E0|SSL_ST_ACCEPT) #define SSL3_ST_SW_FINISHED_B (0x1E1|SSL_ST_ACCEPT) #define SSL3_ST_SW_SESSION_TICKET_A (0x1F0|SSL_ST_ACCEPT) #define SSL3_ST_SW_SESSION_TICKET_B (0x1F1|SSL_ST_ACCEPT) #define SSL3_ST_SW_CERT_STATUS_A (0x200|SSL_ST_ACCEPT) #define SSL3_ST_SW_CERT_STATUS_B (0x201|SSL_ST_ACCEPT) #define SSL3_MT_HELLO_REQUEST 0 #define SSL3_MT_CLIENT_HELLO 1 #define SSL3_MT_SERVER_HELLO 2 #define SSL3_MT_NEWSESSION_TICKET 4 #define SSL3_MT_CERTIFICATE 11 #define SSL3_MT_SERVER_KEY_EXCHANGE 12 #define SSL3_MT_CERTIFICATE_REQUEST 13 #define SSL3_MT_SERVER_DONE 14 #define SSL3_MT_CERTIFICATE_VERIFY 15 #define SSL3_MT_CLIENT_KEY_EXCHANGE 16 #define SSL3_MT_FINISHED 20 #define SSL3_MT_CERTIFICATE_STATUS 22 #define SSL3_MT_NEXT_PROTO 67 #define DTLS1_MT_HELLO_VERIFY_REQUEST 3 #define SSL3_MT_CCS 1 #define SSL3_CC_READ 0x01 #define SSL3_CC_WRITE 0x02 #define SSL3_CC_CLIENT 0x10 #define SSL3_CC_SERVER 0x20 #define SSL3_CHANGE_CIPHER_CLIENT_WRITE (SSL3_CC_CLIENT|SSL3_CC_WRITE) #define SSL3_CHANGE_CIPHER_SERVER_READ (SSL3_CC_SERVER|SSL3_CC_READ) #define SSL3_CHANGE_CIPHER_CLIENT_READ (SSL3_CC_CLIENT|SSL3_CC_READ) #define SSL3_CHANGE_CIPHER_SERVER_WRITE (SSL3_CC_SERVER|SSL3_CC_WRITE) # 1365 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/tls1.h" 1 3 4 # 152 "/usr/include/openssl/tls1.h" 3 4 #define HEADER_TLS1_H #define TLS1_ALLOW_EXPERIMENTAL_CIPHERSUITES 0 #define TLS1_VERSION 0x0301 #define TLS1_1_VERSION 0x0302 #define TLS1_2_VERSION 0x0303 #define TLS_MAX_VERSION TLS1_2_VERSION #define TLS1_VERSION_MAJOR 0x03 #define TLS1_VERSION_MINOR 0x01 #define TLS1_1_VERSION_MAJOR 0x03 #define TLS1_1_VERSION_MINOR 0x02 #define TLS1_2_VERSION_MAJOR 0x03 #define TLS1_2_VERSION_MINOR 0x03 #define TLS1_get_version(s) ((s->version >> 8) == TLS1_VERSION_MAJOR ? s->version : 0) #define TLS1_get_client_version(s) ((s->client_version >> 8) == TLS1_VERSION_MAJOR ? s->client_version : 0) #define TLS1_AD_DECRYPTION_FAILED 21 #define TLS1_AD_RECORD_OVERFLOW 22 #define TLS1_AD_UNKNOWN_CA 48 #define TLS1_AD_ACCESS_DENIED 49 #define TLS1_AD_DECODE_ERROR 50 #define TLS1_AD_DECRYPT_ERROR 51 #define TLS1_AD_EXPORT_RESTRICTION 60 #define TLS1_AD_PROTOCOL_VERSION 70 #define TLS1_AD_INSUFFICIENT_SECURITY 71 #define TLS1_AD_INTERNAL_ERROR 80 #define TLS1_AD_INAPPROPRIATE_FALLBACK 86 #define TLS1_AD_USER_CANCELLED 90 #define TLS1_AD_NO_RENEGOTIATION 100 #define TLS1_AD_UNSUPPORTED_EXTENSION 110 #define TLS1_AD_CERTIFICATE_UNOBTAINABLE 111 #define TLS1_AD_UNRECOGNIZED_NAME 112 #define TLS1_AD_BAD_CERTIFICATE_STATUS_RESPONSE 113 #define TLS1_AD_BAD_CERTIFICATE_HASH_VALUE 114 #define TLS1_AD_UNKNOWN_PSK_IDENTITY 115 #define TLSEXT_TYPE_server_name 0 #define TLSEXT_TYPE_max_fragment_length 1 #define TLSEXT_TYPE_client_certificate_url 2 #define TLSEXT_TYPE_trusted_ca_keys 3 #define TLSEXT_TYPE_truncated_hmac 4 #define TLSEXT_TYPE_status_request 5 #define TLSEXT_TYPE_user_mapping 6 #define TLSEXT_TYPE_client_authz 7 #define TLSEXT_TYPE_server_authz 8 #define TLSEXT_TYPE_cert_type 9 #define TLSEXT_TYPE_elliptic_curves 10 #define TLSEXT_TYPE_ec_point_formats 11 #define TLSEXT_TYPE_srp 12 #define TLSEXT_TYPE_signature_algorithms 13 #define TLSEXT_TYPE_use_srtp 14 #define TLSEXT_TYPE_heartbeat 15 #define TLSEXT_TYPE_session_ticket 35 # 247 "/usr/include/openssl/tls1.h" 3 4 #define TLSEXT_TYPE_renegotiate 0xff01 #define TLSEXT_TYPE_next_proto_neg 13172 #define TLSEXT_NAMETYPE_host_name 0 #define TLSEXT_STATUSTYPE_ocsp 1 #define TLSEXT_ECPOINTFORMAT_first 0 #define TLSEXT_ECPOINTFORMAT_uncompressed 0 #define TLSEXT_ECPOINTFORMAT_ansiX962_compressed_prime 1 #define TLSEXT_ECPOINTFORMAT_ansiX962_compressed_char2 2 #define TLSEXT_ECPOINTFORMAT_last 2 #define TLSEXT_signature_anonymous 0 #define TLSEXT_signature_rsa 1 #define TLSEXT_signature_dsa 2 #define TLSEXT_signature_ecdsa 3 #define TLSEXT_hash_none 0 #define TLSEXT_hash_md5 1 #define TLSEXT_hash_sha1 2 #define TLSEXT_hash_sha224 3 #define TLSEXT_hash_sha256 4 #define TLSEXT_hash_sha384 5 #define TLSEXT_hash_sha512 6 #define TLSEXT_MAXLEN_host_name 255 const char *SSL_get_servername(const SSL *s, const int type); int SSL_get_servername_type(const SSL *s); int SSL_export_keying_material(SSL *s, unsigned char *out, size_t olen, const char *label, size_t llen, const unsigned char *p, size_t plen, int use_context); #define SSL_set_tlsext_host_name(s,name) SSL_ctrl(s,SSL_CTRL_SET_TLSEXT_HOSTNAME,TLSEXT_NAMETYPE_host_name,(char *)name) #define SSL_set_tlsext_debug_callback(ssl,cb) SSL_callback_ctrl(ssl,SSL_CTRL_SET_TLSEXT_DEBUG_CB,(void (*)(void))cb) #define SSL_set_tlsext_debug_arg(ssl,arg) SSL_ctrl(ssl,SSL_CTRL_SET_TLSEXT_DEBUG_ARG,0, (void *)arg) #define SSL_set_tlsext_status_type(ssl,type) SSL_ctrl(ssl,SSL_CTRL_SET_TLSEXT_STATUS_REQ_TYPE,type, NULL) #define SSL_get_tlsext_status_exts(ssl,arg) SSL_ctrl(ssl,SSL_CTRL_GET_TLSEXT_STATUS_REQ_EXTS,0, (void *)arg) #define SSL_set_tlsext_status_exts(ssl,arg) SSL_ctrl(ssl,SSL_CTRL_SET_TLSEXT_STATUS_REQ_EXTS,0, (void *)arg) #define SSL_get_tlsext_status_ids(ssl,arg) SSL_ctrl(ssl,SSL_CTRL_GET_TLSEXT_STATUS_REQ_IDS,0, (void *)arg) #define SSL_set_tlsext_status_ids(ssl,arg) SSL_ctrl(ssl,SSL_CTRL_SET_TLSEXT_STATUS_REQ_IDS,0, (void *)arg) #define SSL_get_tlsext_status_ocsp_resp(ssl,arg) SSL_ctrl(ssl,SSL_CTRL_GET_TLSEXT_STATUS_REQ_OCSP_RESP,0, (void *)arg) #define SSL_set_tlsext_status_ocsp_resp(ssl,arg,arglen) SSL_ctrl(ssl,SSL_CTRL_SET_TLSEXT_STATUS_REQ_OCSP_RESP,arglen, (void *)arg) #define SSL_CTX_set_tlsext_servername_callback(ctx,cb) SSL_CTX_callback_ctrl(ctx,SSL_CTRL_SET_TLSEXT_SERVERNAME_CB,(void (*)(void))cb) #define SSL_TLSEXT_ERR_OK 0 #define SSL_TLSEXT_ERR_ALERT_WARNING 1 #define SSL_TLSEXT_ERR_ALERT_FATAL 2 #define SSL_TLSEXT_ERR_NOACK 3 #define SSL_CTX_set_tlsext_servername_arg(ctx,arg) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_TLSEXT_SERVERNAME_ARG,0, (void *)arg) #define SSL_CTX_get_tlsext_ticket_keys(ctx,keys,keylen) SSL_CTX_ctrl((ctx),SSL_CTRL_GET_TLSEXT_TICKET_KEYS,(keylen),(keys)) #define SSL_CTX_set_tlsext_ticket_keys(ctx,keys,keylen) SSL_CTX_ctrl((ctx),SSL_CTRL_SET_TLSEXT_TICKET_KEYS,(keylen),(keys)) #define SSL_CTX_set_tlsext_status_cb(ssl,cb) SSL_CTX_callback_ctrl(ssl,SSL_CTRL_SET_TLSEXT_STATUS_REQ_CB,(void (*)(void))cb) #define SSL_CTX_set_tlsext_status_arg(ssl,arg) SSL_CTX_ctrl(ssl,SSL_CTRL_SET_TLSEXT_STATUS_REQ_CB_ARG,0, (void *)arg) #define SSL_set_tlsext_opaque_prf_input(s,src,len) SSL_ctrl(s,SSL_CTRL_SET_TLSEXT_OPAQUE_PRF_INPUT, len, src) #define SSL_CTX_set_tlsext_opaque_prf_input_callback(ctx,cb) SSL_CTX_callback_ctrl(ctx,SSL_CTRL_SET_TLSEXT_OPAQUE_PRF_INPUT_CB, (void (*)(void))cb) #define SSL_CTX_set_tlsext_opaque_prf_input_callback_arg(ctx,arg) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_TLSEXT_OPAQUE_PRF_INPUT_CB_ARG, 0, arg) #define SSL_CTX_set_tlsext_ticket_key_cb(ssl,cb) SSL_CTX_callback_ctrl(ssl,SSL_CTRL_SET_TLSEXT_TICKET_KEY_CB,(void (*)(void))cb) #define SSL_TLSEXT_HB_ENABLED 0x01 #define SSL_TLSEXT_HB_DONT_SEND_REQUESTS 0x02 #define SSL_TLSEXT_HB_DONT_RECV_REQUESTS 0x04 #define SSL_get_tlsext_heartbeat_pending(ssl) SSL_ctrl((ssl),SSL_CTRL_GET_TLS_EXT_HEARTBEAT_PENDING,0,NULL) #define SSL_set_tlsext_heartbeat_no_requests(ssl,arg) SSL_ctrl((ssl),SSL_CTRL_SET_TLS_EXT_HEARTBEAT_NO_REQUESTS,arg,NULL) #define TLS1_CK_PSK_WITH_RC4_128_SHA 0x0300008A #define TLS1_CK_PSK_WITH_3DES_EDE_CBC_SHA 0x0300008B #define TLS1_CK_PSK_WITH_AES_128_CBC_SHA 0x0300008C #define TLS1_CK_PSK_WITH_AES_256_CBC_SHA 0x0300008D #define TLS1_CK_RSA_EXPORT1024_WITH_RC4_56_MD5 0x03000060 #define TLS1_CK_RSA_EXPORT1024_WITH_RC2_CBC_56_MD5 0x03000061 #define TLS1_CK_RSA_EXPORT1024_WITH_DES_CBC_SHA 0x03000062 #define TLS1_CK_DHE_DSS_EXPORT1024_WITH_DES_CBC_SHA 0x03000063 #define TLS1_CK_RSA_EXPORT1024_WITH_RC4_56_SHA 0x03000064 #define TLS1_CK_DHE_DSS_EXPORT1024_WITH_RC4_56_SHA 0x03000065 #define TLS1_CK_DHE_DSS_WITH_RC4_128_SHA 0x03000066 #define TLS1_CK_RSA_WITH_AES_128_SHA 0x0300002F #define TLS1_CK_DH_DSS_WITH_AES_128_SHA 0x03000030 #define TLS1_CK_DH_RSA_WITH_AES_128_SHA 0x03000031 #define TLS1_CK_DHE_DSS_WITH_AES_128_SHA 0x03000032 #define TLS1_CK_DHE_RSA_WITH_AES_128_SHA 0x03000033 #define TLS1_CK_ADH_WITH_AES_128_SHA 0x03000034 #define TLS1_CK_RSA_WITH_AES_256_SHA 0x03000035 #define TLS1_CK_DH_DSS_WITH_AES_256_SHA 0x03000036 #define TLS1_CK_DH_RSA_WITH_AES_256_SHA 0x03000037 #define TLS1_CK_DHE_DSS_WITH_AES_256_SHA 0x03000038 #define TLS1_CK_DHE_RSA_WITH_AES_256_SHA 0x03000039 #define TLS1_CK_ADH_WITH_AES_256_SHA 0x0300003A #define TLS1_CK_RSA_WITH_NULL_SHA256 0x0300003B #define TLS1_CK_RSA_WITH_AES_128_SHA256 0x0300003C #define TLS1_CK_RSA_WITH_AES_256_SHA256 0x0300003D #define TLS1_CK_DH_DSS_WITH_AES_128_SHA256 0x0300003E #define TLS1_CK_DH_RSA_WITH_AES_128_SHA256 0x0300003F #define TLS1_CK_DHE_DSS_WITH_AES_128_SHA256 0x03000040 #define TLS1_CK_RSA_WITH_CAMELLIA_128_CBC_SHA 0x03000041 #define TLS1_CK_DH_DSS_WITH_CAMELLIA_128_CBC_SHA 0x03000042 #define TLS1_CK_DH_RSA_WITH_CAMELLIA_128_CBC_SHA 0x03000043 #define TLS1_CK_DHE_DSS_WITH_CAMELLIA_128_CBC_SHA 0x03000044 #define TLS1_CK_DHE_RSA_WITH_CAMELLIA_128_CBC_SHA 0x03000045 #define TLS1_CK_ADH_WITH_CAMELLIA_128_CBC_SHA 0x03000046 #define TLS1_CK_DHE_RSA_WITH_AES_128_SHA256 0x03000067 #define TLS1_CK_DH_DSS_WITH_AES_256_SHA256 0x03000068 #define TLS1_CK_DH_RSA_WITH_AES_256_SHA256 0x03000069 #define TLS1_CK_DHE_DSS_WITH_AES_256_SHA256 0x0300006A #define TLS1_CK_DHE_RSA_WITH_AES_256_SHA256 0x0300006B #define TLS1_CK_ADH_WITH_AES_128_SHA256 0x0300006C #define TLS1_CK_ADH_WITH_AES_256_SHA256 0x0300006D #define TLS1_CK_RSA_WITH_CAMELLIA_256_CBC_SHA 0x03000084 #define TLS1_CK_DH_DSS_WITH_CAMELLIA_256_CBC_SHA 0x03000085 #define TLS1_CK_DH_RSA_WITH_CAMELLIA_256_CBC_SHA 0x03000086 #define TLS1_CK_DHE_DSS_WITH_CAMELLIA_256_CBC_SHA 0x03000087 #define TLS1_CK_DHE_RSA_WITH_CAMELLIA_256_CBC_SHA 0x03000088 #define TLS1_CK_ADH_WITH_CAMELLIA_256_CBC_SHA 0x03000089 #define TLS1_CK_RSA_WITH_SEED_SHA 0x03000096 #define TLS1_CK_DH_DSS_WITH_SEED_SHA 0x03000097 #define TLS1_CK_DH_RSA_WITH_SEED_SHA 0x03000098 #define TLS1_CK_DHE_DSS_WITH_SEED_SHA 0x03000099 #define TLS1_CK_DHE_RSA_WITH_SEED_SHA 0x0300009A #define TLS1_CK_ADH_WITH_SEED_SHA 0x0300009B #define TLS1_CK_RSA_WITH_AES_128_GCM_SHA256 0x0300009C #define TLS1_CK_RSA_WITH_AES_256_GCM_SHA384 0x0300009D #define TLS1_CK_DHE_RSA_WITH_AES_128_GCM_SHA256 0x0300009E #define TLS1_CK_DHE_RSA_WITH_AES_256_GCM_SHA384 0x0300009F #define TLS1_CK_DH_RSA_WITH_AES_128_GCM_SHA256 0x030000A0 #define TLS1_CK_DH_RSA_WITH_AES_256_GCM_SHA384 0x030000A1 #define TLS1_CK_DHE_DSS_WITH_AES_128_GCM_SHA256 0x030000A2 #define TLS1_CK_DHE_DSS_WITH_AES_256_GCM_SHA384 0x030000A3 #define TLS1_CK_DH_DSS_WITH_AES_128_GCM_SHA256 0x030000A4 #define TLS1_CK_DH_DSS_WITH_AES_256_GCM_SHA384 0x030000A5 #define TLS1_CK_ADH_WITH_AES_128_GCM_SHA256 0x030000A6 #define TLS1_CK_ADH_WITH_AES_256_GCM_SHA384 0x030000A7 #define TLS1_CK_ECDH_ECDSA_WITH_NULL_SHA 0x0300C001 #define TLS1_CK_ECDH_ECDSA_WITH_RC4_128_SHA 0x0300C002 #define TLS1_CK_ECDH_ECDSA_WITH_DES_192_CBC3_SHA 0x0300C003 #define TLS1_CK_ECDH_ECDSA_WITH_AES_128_CBC_SHA 0x0300C004 #define TLS1_CK_ECDH_ECDSA_WITH_AES_256_CBC_SHA 0x0300C005 #define TLS1_CK_ECDHE_ECDSA_WITH_NULL_SHA 0x0300C006 #define TLS1_CK_ECDHE_ECDSA_WITH_RC4_128_SHA 0x0300C007 #define TLS1_CK_ECDHE_ECDSA_WITH_DES_192_CBC3_SHA 0x0300C008 #define TLS1_CK_ECDHE_ECDSA_WITH_AES_128_CBC_SHA 0x0300C009 #define TLS1_CK_ECDHE_ECDSA_WITH_AES_256_CBC_SHA 0x0300C00A #define TLS1_CK_ECDH_RSA_WITH_NULL_SHA 0x0300C00B #define TLS1_CK_ECDH_RSA_WITH_RC4_128_SHA 0x0300C00C #define TLS1_CK_ECDH_RSA_WITH_DES_192_CBC3_SHA 0x0300C00D #define TLS1_CK_ECDH_RSA_WITH_AES_128_CBC_SHA 0x0300C00E #define TLS1_CK_ECDH_RSA_WITH_AES_256_CBC_SHA 0x0300C00F #define TLS1_CK_ECDHE_RSA_WITH_NULL_SHA 0x0300C010 #define TLS1_CK_ECDHE_RSA_WITH_RC4_128_SHA 0x0300C011 #define TLS1_CK_ECDHE_RSA_WITH_DES_192_CBC3_SHA 0x0300C012 #define TLS1_CK_ECDHE_RSA_WITH_AES_128_CBC_SHA 0x0300C013 #define TLS1_CK_ECDHE_RSA_WITH_AES_256_CBC_SHA 0x0300C014 #define TLS1_CK_ECDH_anon_WITH_NULL_SHA 0x0300C015 #define TLS1_CK_ECDH_anon_WITH_RC4_128_SHA 0x0300C016 #define TLS1_CK_ECDH_anon_WITH_DES_192_CBC3_SHA 0x0300C017 #define TLS1_CK_ECDH_anon_WITH_AES_128_CBC_SHA 0x0300C018 #define TLS1_CK_ECDH_anon_WITH_AES_256_CBC_SHA 0x0300C019 #define TLS1_CK_SRP_SHA_WITH_3DES_EDE_CBC_SHA 0x0300C01A #define TLS1_CK_SRP_SHA_RSA_WITH_3DES_EDE_CBC_SHA 0x0300C01B #define TLS1_CK_SRP_SHA_DSS_WITH_3DES_EDE_CBC_SHA 0x0300C01C #define TLS1_CK_SRP_SHA_WITH_AES_128_CBC_SHA 0x0300C01D #define TLS1_CK_SRP_SHA_RSA_WITH_AES_128_CBC_SHA 0x0300C01E #define TLS1_CK_SRP_SHA_DSS_WITH_AES_128_CBC_SHA 0x0300C01F #define TLS1_CK_SRP_SHA_WITH_AES_256_CBC_SHA 0x0300C020 #define TLS1_CK_SRP_SHA_RSA_WITH_AES_256_CBC_SHA 0x0300C021 #define TLS1_CK_SRP_SHA_DSS_WITH_AES_256_CBC_SHA 0x0300C022 #define TLS1_CK_ECDHE_ECDSA_WITH_AES_128_SHA256 0x0300C023 #define TLS1_CK_ECDHE_ECDSA_WITH_AES_256_SHA384 0x0300C024 #define TLS1_CK_ECDH_ECDSA_WITH_AES_128_SHA256 0x0300C025 #define TLS1_CK_ECDH_ECDSA_WITH_AES_256_SHA384 0x0300C026 #define TLS1_CK_ECDHE_RSA_WITH_AES_128_SHA256 0x0300C027 #define TLS1_CK_ECDHE_RSA_WITH_AES_256_SHA384 0x0300C028 #define TLS1_CK_ECDH_RSA_WITH_AES_128_SHA256 0x0300C029 #define TLS1_CK_ECDH_RSA_WITH_AES_256_SHA384 0x0300C02A #define TLS1_CK_ECDHE_ECDSA_WITH_AES_128_GCM_SHA256 0x0300C02B #define TLS1_CK_ECDHE_ECDSA_WITH_AES_256_GCM_SHA384 0x0300C02C #define TLS1_CK_ECDH_ECDSA_WITH_AES_128_GCM_SHA256 0x0300C02D #define TLS1_CK_ECDH_ECDSA_WITH_AES_256_GCM_SHA384 0x0300C02E #define TLS1_CK_ECDHE_RSA_WITH_AES_128_GCM_SHA256 0x0300C02F #define TLS1_CK_ECDHE_RSA_WITH_AES_256_GCM_SHA384 0x0300C030 #define TLS1_CK_ECDH_RSA_WITH_AES_128_GCM_SHA256 0x0300C031 #define TLS1_CK_ECDH_RSA_WITH_AES_256_GCM_SHA384 0x0300C032 # 532 "/usr/include/openssl/tls1.h" 3 4 #define TLS1_TXT_RSA_EXPORT1024_WITH_RC4_56_MD5 "EXP1024-RC4-MD5" #define TLS1_TXT_RSA_EXPORT1024_WITH_RC2_CBC_56_MD5 "EXP1024-RC2-CBC-MD5" #define TLS1_TXT_RSA_EXPORT1024_WITH_DES_CBC_SHA "EXP1024-DES-CBC-SHA" #define TLS1_TXT_DHE_DSS_EXPORT1024_WITH_DES_CBC_SHA "EXP1024-DHE-DSS-DES-CBC-SHA" #define TLS1_TXT_RSA_EXPORT1024_WITH_RC4_56_SHA "EXP1024-RC4-SHA" #define TLS1_TXT_DHE_DSS_EXPORT1024_WITH_RC4_56_SHA "EXP1024-DHE-DSS-RC4-SHA" #define TLS1_TXT_DHE_DSS_WITH_RC4_128_SHA "DHE-DSS-RC4-SHA" #define TLS1_TXT_RSA_WITH_AES_128_SHA "AES128-SHA" #define TLS1_TXT_DH_DSS_WITH_AES_128_SHA "DH-DSS-AES128-SHA" #define TLS1_TXT_DH_RSA_WITH_AES_128_SHA "DH-RSA-AES128-SHA" #define TLS1_TXT_DHE_DSS_WITH_AES_128_SHA "DHE-DSS-AES128-SHA" #define TLS1_TXT_DHE_RSA_WITH_AES_128_SHA "DHE-RSA-AES128-SHA" #define TLS1_TXT_ADH_WITH_AES_128_SHA "ADH-AES128-SHA" #define TLS1_TXT_RSA_WITH_AES_256_SHA "AES256-SHA" #define TLS1_TXT_DH_DSS_WITH_AES_256_SHA "DH-DSS-AES256-SHA" #define TLS1_TXT_DH_RSA_WITH_AES_256_SHA "DH-RSA-AES256-SHA" #define TLS1_TXT_DHE_DSS_WITH_AES_256_SHA "DHE-DSS-AES256-SHA" #define TLS1_TXT_DHE_RSA_WITH_AES_256_SHA "DHE-RSA-AES256-SHA" #define TLS1_TXT_ADH_WITH_AES_256_SHA "ADH-AES256-SHA" #define TLS1_TXT_ECDH_ECDSA_WITH_NULL_SHA "ECDH-ECDSA-NULL-SHA" #define TLS1_TXT_ECDH_ECDSA_WITH_RC4_128_SHA "ECDH-ECDSA-RC4-SHA" #define TLS1_TXT_ECDH_ECDSA_WITH_DES_192_CBC3_SHA "ECDH-ECDSA-DES-CBC3-SHA" #define TLS1_TXT_ECDH_ECDSA_WITH_AES_128_CBC_SHA "ECDH-ECDSA-AES128-SHA" #define TLS1_TXT_ECDH_ECDSA_WITH_AES_256_CBC_SHA "ECDH-ECDSA-AES256-SHA" #define TLS1_TXT_ECDHE_ECDSA_WITH_NULL_SHA "ECDHE-ECDSA-NULL-SHA" #define TLS1_TXT_ECDHE_ECDSA_WITH_RC4_128_SHA "ECDHE-ECDSA-RC4-SHA" #define TLS1_TXT_ECDHE_ECDSA_WITH_DES_192_CBC3_SHA "ECDHE-ECDSA-DES-CBC3-SHA" #define TLS1_TXT_ECDHE_ECDSA_WITH_AES_128_CBC_SHA "ECDHE-ECDSA-AES128-SHA" #define TLS1_TXT_ECDHE_ECDSA_WITH_AES_256_CBC_SHA "ECDHE-ECDSA-AES256-SHA" #define TLS1_TXT_ECDH_RSA_WITH_NULL_SHA "ECDH-RSA-NULL-SHA" #define TLS1_TXT_ECDH_RSA_WITH_RC4_128_SHA "ECDH-RSA-RC4-SHA" #define TLS1_TXT_ECDH_RSA_WITH_DES_192_CBC3_SHA "ECDH-RSA-DES-CBC3-SHA" #define TLS1_TXT_ECDH_RSA_WITH_AES_128_CBC_SHA "ECDH-RSA-AES128-SHA" #define TLS1_TXT_ECDH_RSA_WITH_AES_256_CBC_SHA "ECDH-RSA-AES256-SHA" #define TLS1_TXT_ECDHE_RSA_WITH_NULL_SHA "ECDHE-RSA-NULL-SHA" #define TLS1_TXT_ECDHE_RSA_WITH_RC4_128_SHA "ECDHE-RSA-RC4-SHA" #define TLS1_TXT_ECDHE_RSA_WITH_DES_192_CBC3_SHA "ECDHE-RSA-DES-CBC3-SHA" #define TLS1_TXT_ECDHE_RSA_WITH_AES_128_CBC_SHA "ECDHE-RSA-AES128-SHA" #define TLS1_TXT_ECDHE_RSA_WITH_AES_256_CBC_SHA "ECDHE-RSA-AES256-SHA" #define TLS1_TXT_ECDH_anon_WITH_NULL_SHA "AECDH-NULL-SHA" #define TLS1_TXT_ECDH_anon_WITH_RC4_128_SHA "AECDH-RC4-SHA" #define TLS1_TXT_ECDH_anon_WITH_DES_192_CBC3_SHA "AECDH-DES-CBC3-SHA" #define TLS1_TXT_ECDH_anon_WITH_AES_128_CBC_SHA "AECDH-AES128-SHA" #define TLS1_TXT_ECDH_anon_WITH_AES_256_CBC_SHA "AECDH-AES256-SHA" #define TLS1_TXT_PSK_WITH_RC4_128_SHA "PSK-RC4-SHA" #define TLS1_TXT_PSK_WITH_3DES_EDE_CBC_SHA "PSK-3DES-EDE-CBC-SHA" #define TLS1_TXT_PSK_WITH_AES_128_CBC_SHA "PSK-AES128-CBC-SHA" #define TLS1_TXT_PSK_WITH_AES_256_CBC_SHA "PSK-AES256-CBC-SHA" #define TLS1_TXT_SRP_SHA_WITH_3DES_EDE_CBC_SHA "SRP-3DES-EDE-CBC-SHA" #define TLS1_TXT_SRP_SHA_RSA_WITH_3DES_EDE_CBC_SHA "SRP-RSA-3DES-EDE-CBC-SHA" #define TLS1_TXT_SRP_SHA_DSS_WITH_3DES_EDE_CBC_SHA "SRP-DSS-3DES-EDE-CBC-SHA" #define TLS1_TXT_SRP_SHA_WITH_AES_128_CBC_SHA "SRP-AES-128-CBC-SHA" #define TLS1_TXT_SRP_SHA_RSA_WITH_AES_128_CBC_SHA "SRP-RSA-AES-128-CBC-SHA" #define TLS1_TXT_SRP_SHA_DSS_WITH_AES_128_CBC_SHA "SRP-DSS-AES-128-CBC-SHA" #define TLS1_TXT_SRP_SHA_WITH_AES_256_CBC_SHA "SRP-AES-256-CBC-SHA" #define TLS1_TXT_SRP_SHA_RSA_WITH_AES_256_CBC_SHA "SRP-RSA-AES-256-CBC-SHA" #define TLS1_TXT_SRP_SHA_DSS_WITH_AES_256_CBC_SHA "SRP-DSS-AES-256-CBC-SHA" #define TLS1_TXT_RSA_WITH_CAMELLIA_128_CBC_SHA "CAMELLIA128-SHA" #define TLS1_TXT_DH_DSS_WITH_CAMELLIA_128_CBC_SHA "DH-DSS-CAMELLIA128-SHA" #define TLS1_TXT_DH_RSA_WITH_CAMELLIA_128_CBC_SHA "DH-RSA-CAMELLIA128-SHA" #define TLS1_TXT_DHE_DSS_WITH_CAMELLIA_128_CBC_SHA "DHE-DSS-CAMELLIA128-SHA" #define TLS1_TXT_DHE_RSA_WITH_CAMELLIA_128_CBC_SHA "DHE-RSA-CAMELLIA128-SHA" #define TLS1_TXT_ADH_WITH_CAMELLIA_128_CBC_SHA "ADH-CAMELLIA128-SHA" #define TLS1_TXT_RSA_WITH_CAMELLIA_256_CBC_SHA "CAMELLIA256-SHA" #define TLS1_TXT_DH_DSS_WITH_CAMELLIA_256_CBC_SHA "DH-DSS-CAMELLIA256-SHA" #define TLS1_TXT_DH_RSA_WITH_CAMELLIA_256_CBC_SHA "DH-RSA-CAMELLIA256-SHA" #define TLS1_TXT_DHE_DSS_WITH_CAMELLIA_256_CBC_SHA "DHE-DSS-CAMELLIA256-SHA" #define TLS1_TXT_DHE_RSA_WITH_CAMELLIA_256_CBC_SHA "DHE-RSA-CAMELLIA256-SHA" #define TLS1_TXT_ADH_WITH_CAMELLIA_256_CBC_SHA "ADH-CAMELLIA256-SHA" #define TLS1_TXT_RSA_WITH_SEED_SHA "SEED-SHA" #define TLS1_TXT_DH_DSS_WITH_SEED_SHA "DH-DSS-SEED-SHA" #define TLS1_TXT_DH_RSA_WITH_SEED_SHA "DH-RSA-SEED-SHA" #define TLS1_TXT_DHE_DSS_WITH_SEED_SHA "DHE-DSS-SEED-SHA" #define TLS1_TXT_DHE_RSA_WITH_SEED_SHA "DHE-RSA-SEED-SHA" #define TLS1_TXT_ADH_WITH_SEED_SHA "ADH-SEED-SHA" #define TLS1_TXT_RSA_WITH_NULL_SHA256 "NULL-SHA256" #define TLS1_TXT_RSA_WITH_AES_128_SHA256 "AES128-SHA256" #define TLS1_TXT_RSA_WITH_AES_256_SHA256 "AES256-SHA256" #define TLS1_TXT_DH_DSS_WITH_AES_128_SHA256 "DH-DSS-AES128-SHA256" #define TLS1_TXT_DH_RSA_WITH_AES_128_SHA256 "DH-RSA-AES128-SHA256" #define TLS1_TXT_DHE_DSS_WITH_AES_128_SHA256 "DHE-DSS-AES128-SHA256" #define TLS1_TXT_DHE_RSA_WITH_AES_128_SHA256 "DHE-RSA-AES128-SHA256" #define TLS1_TXT_DH_DSS_WITH_AES_256_SHA256 "DH-DSS-AES256-SHA256" #define TLS1_TXT_DH_RSA_WITH_AES_256_SHA256 "DH-RSA-AES256-SHA256" #define TLS1_TXT_DHE_DSS_WITH_AES_256_SHA256 "DHE-DSS-AES256-SHA256" #define TLS1_TXT_DHE_RSA_WITH_AES_256_SHA256 "DHE-RSA-AES256-SHA256" #define TLS1_TXT_ADH_WITH_AES_128_SHA256 "ADH-AES128-SHA256" #define TLS1_TXT_ADH_WITH_AES_256_SHA256 "ADH-AES256-SHA256" #define TLS1_TXT_RSA_WITH_AES_128_GCM_SHA256 "AES128-GCM-SHA256" #define TLS1_TXT_RSA_WITH_AES_256_GCM_SHA384 "AES256-GCM-SHA384" #define TLS1_TXT_DHE_RSA_WITH_AES_128_GCM_SHA256 "DHE-RSA-AES128-GCM-SHA256" #define TLS1_TXT_DHE_RSA_WITH_AES_256_GCM_SHA384 "DHE-RSA-AES256-GCM-SHA384" #define TLS1_TXT_DH_RSA_WITH_AES_128_GCM_SHA256 "DH-RSA-AES128-GCM-SHA256" #define TLS1_TXT_DH_RSA_WITH_AES_256_GCM_SHA384 "DH-RSA-AES256-GCM-SHA384" #define TLS1_TXT_DHE_DSS_WITH_AES_128_GCM_SHA256 "DHE-DSS-AES128-GCM-SHA256" #define TLS1_TXT_DHE_DSS_WITH_AES_256_GCM_SHA384 "DHE-DSS-AES256-GCM-SHA384" #define TLS1_TXT_DH_DSS_WITH_AES_128_GCM_SHA256 "DH-DSS-AES128-GCM-SHA256" #define TLS1_TXT_DH_DSS_WITH_AES_256_GCM_SHA384 "DH-DSS-AES256-GCM-SHA384" #define TLS1_TXT_ADH_WITH_AES_128_GCM_SHA256 "ADH-AES128-GCM-SHA256" #define TLS1_TXT_ADH_WITH_AES_256_GCM_SHA384 "ADH-AES256-GCM-SHA384" #define TLS1_TXT_ECDHE_ECDSA_WITH_AES_128_SHA256 "ECDHE-ECDSA-AES128-SHA256" #define TLS1_TXT_ECDHE_ECDSA_WITH_AES_256_SHA384 "ECDHE-ECDSA-AES256-SHA384" #define TLS1_TXT_ECDH_ECDSA_WITH_AES_128_SHA256 "ECDH-ECDSA-AES128-SHA256" #define TLS1_TXT_ECDH_ECDSA_WITH_AES_256_SHA384 "ECDH-ECDSA-AES256-SHA384" #define TLS1_TXT_ECDHE_RSA_WITH_AES_128_SHA256 "ECDHE-RSA-AES128-SHA256" #define TLS1_TXT_ECDHE_RSA_WITH_AES_256_SHA384 "ECDHE-RSA-AES256-SHA384" #define TLS1_TXT_ECDH_RSA_WITH_AES_128_SHA256 "ECDH-RSA-AES128-SHA256" #define TLS1_TXT_ECDH_RSA_WITH_AES_256_SHA384 "ECDH-RSA-AES256-SHA384" #define TLS1_TXT_ECDHE_ECDSA_WITH_AES_128_GCM_SHA256 "ECDHE-ECDSA-AES128-GCM-SHA256" #define TLS1_TXT_ECDHE_ECDSA_WITH_AES_256_GCM_SHA384 "ECDHE-ECDSA-AES256-GCM-SHA384" #define TLS1_TXT_ECDH_ECDSA_WITH_AES_128_GCM_SHA256 "ECDH-ECDSA-AES128-GCM-SHA256" #define TLS1_TXT_ECDH_ECDSA_WITH_AES_256_GCM_SHA384 "ECDH-ECDSA-AES256-GCM-SHA384" #define TLS1_TXT_ECDHE_RSA_WITH_AES_128_GCM_SHA256 "ECDHE-RSA-AES128-GCM-SHA256" #define TLS1_TXT_ECDHE_RSA_WITH_AES_256_GCM_SHA384 "ECDHE-RSA-AES256-GCM-SHA384" #define TLS1_TXT_ECDH_RSA_WITH_AES_128_GCM_SHA256 "ECDH-RSA-AES128-GCM-SHA256" #define TLS1_TXT_ECDH_RSA_WITH_AES_256_GCM_SHA384 "ECDH-RSA-AES256-GCM-SHA384" #define TLS_CT_RSA_SIGN 1 #define TLS_CT_DSS_SIGN 2 #define TLS_CT_RSA_FIXED_DH 3 #define TLS_CT_DSS_FIXED_DH 4 #define TLS_CT_ECDSA_SIGN 64 #define TLS_CT_RSA_FIXED_ECDH 65 #define TLS_CT_ECDSA_FIXED_ECDH 66 #define TLS_CT_GOST94_SIGN 21 #define TLS_CT_GOST01_SIGN 22 #define TLS_CT_NUMBER 9 #define TLS1_FINISH_MAC_LENGTH 12 #define TLS_MD_MAX_CONST_SIZE 20 #define TLS_MD_CLIENT_FINISH_CONST "client finished" #define TLS_MD_CLIENT_FINISH_CONST_SIZE 15 #define TLS_MD_SERVER_FINISH_CONST "server finished" #define TLS_MD_SERVER_FINISH_CONST_SIZE 15 #define TLS_MD_SERVER_WRITE_KEY_CONST "server write key" #define TLS_MD_SERVER_WRITE_KEY_CONST_SIZE 16 #define TLS_MD_KEY_EXPANSION_CONST "key expansion" #define TLS_MD_KEY_EXPANSION_CONST_SIZE 13 #define TLS_MD_CLIENT_WRITE_KEY_CONST "client write key" #define TLS_MD_CLIENT_WRITE_KEY_CONST_SIZE 16 #define TLS_MD_SERVER_WRITE_KEY_CONST "server write key" #define TLS_MD_SERVER_WRITE_KEY_CONST_SIZE 16 #define TLS_MD_IV_BLOCK_CONST "IV block" #define TLS_MD_IV_BLOCK_CONST_SIZE 8 #define TLS_MD_MASTER_SECRET_CONST "master secret" #define TLS_MD_MASTER_SECRET_CONST_SIZE 13 # 729 "/usr/include/openssl/tls1.h" 3 4 struct tls_session_ticket_ext_st { unsigned short length; void *data; }; # 1366 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/dtls1.h" 1 3 4 # 61 "/usr/include/openssl/dtls1.h" 3 4 #define HEADER_DTLS1_H # 1 "/usr/include/openssl/pqueue.h" 1 3 4 # 61 "/usr/include/openssl/pqueue.h" 3 4 #define HEADER_PQUEUE_H # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 #define _STRING_H 1 #define __need_size_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 161 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_ptrdiff_t # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 343 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL #define offsetof(TYPE,MEMBER) __builtin_offsetof (TYPE, MEMBER) # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 165 "/usr/include/string.h" 3 4 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 445 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 66 "/usr/include/openssl/pqueue.h" 2 3 4 typedef struct _pqueue *pqueue; typedef struct _pitem { unsigned char priority[8]; void *data; struct _pitem *next; } pitem; typedef struct _pitem *piterator; pitem *pitem_new(unsigned char *prio64be, void *data); void pitem_free(pitem *item); pqueue pqueue_new(void); void pqueue_free(pqueue pq); pitem *pqueue_insert(pqueue pq, pitem *item); pitem *pqueue_peek(pqueue pq); pitem *pqueue_pop(pqueue pq); pitem *pqueue_find(pqueue pq, unsigned char *prio64be); pitem *pqueue_iterator(pqueue pq); pitem *pqueue_next(piterator *iter); void pqueue_print(pqueue pq); int pqueue_size(pqueue pq); # 65 "/usr/include/openssl/dtls1.h" 2 3 4 # 75 "/usr/include/openssl/dtls1.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 #define _SYS_TIME_H 1 #define __need_time_t #define __need_timeval # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 99 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #undef __need_timeval # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 57 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, #define ITIMER_REAL ITIMER_REAL ITIMER_VIRTUAL = 1, #define ITIMER_VIRTUAL ITIMER_VIRTUAL ITIMER_PROF = 2 #define ITIMER_PROF ITIMER_PROF }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 164 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 #define timerisset(tvp) ((tvp)->tv_sec || (tvp)->tv_usec) #define timerclear(tvp) ((tvp)->tv_sec = (tvp)->tv_usec = 0) #define timercmp(a,b,CMP) (((a)->tv_sec == (b)->tv_sec) ? ((a)->tv_usec CMP (b)->tv_usec) : ((a)->tv_sec CMP (b)->tv_sec)) #define timeradd(a,b,result) do { (result)->tv_sec = (a)->tv_sec + (b)->tv_sec; (result)->tv_usec = (a)->tv_usec + (b)->tv_usec; if ((result)->tv_usec >= 1000000) { ++(result)->tv_sec; (result)->tv_usec -= 1000000; } } while (0) # 180 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 #define timersub(a,b,result) do { (result)->tv_sec = (a)->tv_sec - (b)->tv_sec; (result)->tv_usec = (a)->tv_usec - (b)->tv_usec; if ((result)->tv_usec < 0) { --(result)->tv_sec; (result)->tv_usec += 1000000; } } while (0) # 191 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 76 "/usr/include/openssl/dtls1.h" 2 3 4 #define DTLS1_VERSION 0xFEFF #define DTLS_MAX_VERSION DTLS1_VERSION #define DTLS1_BAD_VER 0x0100 #define DTLS1_COOKIE_LENGTH 256 #define DTLS1_RT_HEADER_LENGTH 13 #define DTLS1_HM_HEADER_LENGTH 12 #define DTLS1_HM_BAD_FRAGMENT -2 #define DTLS1_HM_FRAGMENT_RETRY -3 #define DTLS1_CCS_HEADER_LENGTH 1 #define DTLS1_AL_HEADER_LENGTH 2 # 116 "/usr/include/openssl/dtls1.h" 3 4 typedef struct dtls1_bitmap_st { unsigned long map; unsigned char max_seq_num[8]; } DTLS1_BITMAP; struct dtls1_retransmit_state { EVP_CIPHER_CTX *enc_write_ctx; EVP_MD_CTX *write_hash; COMP_CTX *compress; SSL_SESSION *session; unsigned short epoch; }; struct hm_header_st { unsigned char type; unsigned long msg_len; unsigned short seq; unsigned long frag_off; unsigned long frag_len; unsigned int is_ccs; struct dtls1_retransmit_state saved_retransmit_state; }; struct ccs_header_st { unsigned char type; unsigned short seq; }; struct dtls1_timeout_st { unsigned int read_timeouts; unsigned int write_timeouts; unsigned int num_alerts; }; typedef struct record_pqueue_st { unsigned short epoch; pqueue q; } record_pqueue; typedef struct hm_fragment_st { struct hm_header_st msg_header; unsigned char *fragment; unsigned char *reassembly; } hm_fragment; typedef struct dtls1_state_st { unsigned int send_cookie; unsigned char cookie[256]; unsigned char rcvd_cookie[256]; unsigned int cookie_len; unsigned short r_epoch; unsigned short w_epoch; DTLS1_BITMAP bitmap; DTLS1_BITMAP next_bitmap; unsigned short handshake_write_seq; unsigned short next_handshake_write_seq; unsigned short handshake_read_seq; unsigned char last_write_sequence[8]; record_pqueue unprocessed_rcds; record_pqueue processed_rcds; pqueue buffered_messages; pqueue sent_messages; record_pqueue buffered_app_data; unsigned int listen; unsigned int mtu; struct hm_header_st w_msg_hdr; struct hm_header_st r_msg_hdr; struct dtls1_timeout_st timeout; struct timeval next_timeout; unsigned short timeout_duration; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[12]; unsigned int handshake_fragment_len; unsigned int retransmitting; unsigned int change_cipher_spec_ok; # 260 "/usr/include/openssl/dtls1.h" 3 4 } DTLS1_STATE; typedef struct dtls1_record_data_st { unsigned char *packet; unsigned int packet_length; SSL3_BUFFER rbuf; SSL3_RECORD rrec; } DTLS1_RECORD_DATA; #define DTLS1_TMO_READ_COUNT 2 #define DTLS1_TMO_WRITE_COUNT 2 #define DTLS1_TMO_ALERT_COUNT 12 # 1367 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/ssl23.h" 1 3 4 # 60 "/usr/include/openssl/ssl23.h" 3 4 #define HEADER_SSL23_H #define SSL23_ST_CW_CLNT_HELLO_A (0x210|SSL_ST_CONNECT) #define SSL23_ST_CW_CLNT_HELLO_B (0x211|SSL_ST_CONNECT) #define SSL23_ST_CR_SRVR_HELLO_A (0x220|SSL_ST_CONNECT) #define SSL23_ST_CR_SRVR_HELLO_B (0x221|SSL_ST_CONNECT) #define SSL23_ST_SR_CLNT_HELLO_A (0x210|SSL_ST_ACCEPT) #define SSL23_ST_SR_CLNT_HELLO_B (0x211|SSL_ST_ACCEPT) # 1368 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/srtp.h" 1 3 4 # 119 "/usr/include/openssl/srtp.h" 3 4 #define HEADER_D1_SRTP_H #define SRTP_AES128_CM_SHA1_80 0x0001 #define SRTP_AES128_CM_SHA1_32 0x0002 #define SRTP_AES128_F8_SHA1_80 0x0003 #define SRTP_AES128_F8_SHA1_32 0x0004 #define SRTP_NULL_SHA1_80 0x0005 #define SRTP_NULL_SHA1_32 0x0006 int SSL_CTX_set_tlsext_use_srtp(SSL_CTX *ctx, const char *profiles); int SSL_set_tlsext_use_srtp(SSL *ctx, const char *profiles); SRTP_PROTECTION_PROFILE *SSL_get_selected_srtp_profile(SSL *s); struct stack_st_SRTP_PROTECTION_PROFILE *SSL_get_srtp_profiles(SSL *ssl); SRTP_PROTECTION_PROFILE *SSL_get_selected_srtp_profile(SSL *s); # 1369 "/usr/include/openssl/ssl.h" 2 3 4 #define SSL_set_app_data(s,arg) (SSL_set_ex_data(s,0,(char *)arg)) #define SSL_get_app_data(s) (SSL_get_ex_data(s,0)) #define SSL_SESSION_set_app_data(s,a) (SSL_SESSION_set_ex_data(s,0,(char *)a)) #define SSL_SESSION_get_app_data(s) (SSL_SESSION_get_ex_data(s,0)) #define SSL_CTX_get_app_data(ctx) (SSL_CTX_get_ex_data(ctx,0)) #define SSL_CTX_set_app_data(ctx,arg) (SSL_CTX_set_ex_data(ctx,0,(char *)arg)) # 1389 "/usr/include/openssl/ssl.h" 3 4 #define SSL_ST_CONNECT 0x1000 #define SSL_ST_ACCEPT 0x2000 #define SSL_ST_MASK 0x0FFF #define SSL_ST_INIT (SSL_ST_CONNECT|SSL_ST_ACCEPT) #define SSL_ST_BEFORE 0x4000 #define SSL_ST_OK 0x03 #define SSL_ST_RENEGOTIATE (0x04|SSL_ST_INIT) #define SSL_CB_LOOP 0x01 #define SSL_CB_EXIT 0x02 #define SSL_CB_READ 0x04 #define SSL_CB_WRITE 0x08 #define SSL_CB_ALERT 0x4000 #define SSL_CB_READ_ALERT (SSL_CB_ALERT|SSL_CB_READ) #define SSL_CB_WRITE_ALERT (SSL_CB_ALERT|SSL_CB_WRITE) #define SSL_CB_ACCEPT_LOOP (SSL_ST_ACCEPT|SSL_CB_LOOP) #define SSL_CB_ACCEPT_EXIT (SSL_ST_ACCEPT|SSL_CB_EXIT) #define SSL_CB_CONNECT_LOOP (SSL_ST_CONNECT|SSL_CB_LOOP) #define SSL_CB_CONNECT_EXIT (SSL_ST_CONNECT|SSL_CB_EXIT) #define SSL_CB_HANDSHAKE_START 0x10 #define SSL_CB_HANDSHAKE_DONE 0x20 #define SSL_get_state(a) SSL_state(a) #define SSL_is_init_finished(a) (SSL_state(a) == SSL_ST_OK) #define SSL_in_init(a) (SSL_state(a)&SSL_ST_INIT) #define SSL_in_before(a) (SSL_state(a)&SSL_ST_BEFORE) #define SSL_in_connect_init(a) (SSL_state(a)&SSL_ST_CONNECT) #define SSL_in_accept_init(a) (SSL_state(a)&SSL_ST_ACCEPT) #define SSL_ST_READ_HEADER 0xF0 #define SSL_ST_READ_BODY 0xF1 #define SSL_ST_READ_DONE 0xF2 size_t SSL_get_finished(const SSL *s, void *buf, size_t count); size_t SSL_get_peer_finished(const SSL *s, void *buf, size_t count); #define SSL_VERIFY_NONE 0x00 #define SSL_VERIFY_PEER 0x01 #define SSL_VERIFY_FAIL_IF_NO_PEER_CERT 0x02 #define SSL_VERIFY_CLIENT_ONCE 0x04 #define OpenSSL_add_ssl_algorithms() SSL_library_init() #define SSLeay_add_ssl_algorithms() SSL_library_init() # 1451 "/usr/include/openssl/ssl.h" 3 4 #define SSL_get_cipher(s) SSL_CIPHER_get_name(SSL_get_current_cipher(s)) #define SSL_get_cipher_bits(s,np) SSL_CIPHER_get_bits(SSL_get_current_cipher(s),np) #define SSL_get_cipher_version(s) SSL_CIPHER_get_version(SSL_get_current_cipher(s)) #define SSL_get_cipher_name(s) SSL_CIPHER_get_name(SSL_get_current_cipher(s)) #define SSL_get_time(a) SSL_SESSION_get_time(a) #define SSL_set_time(a,b) SSL_SESSION_set_time((a),(b)) #define SSL_get_timeout(a) SSL_SESSION_get_timeout(a) #define SSL_set_timeout(a,b) SSL_SESSION_set_timeout((a),(b)) #define d2i_SSL_SESSION_bio(bp,s_id) ASN1_d2i_bio_of(SSL_SESSION,SSL_SESSION_new,d2i_SSL_SESSION,bp,s_id) #define i2d_SSL_SESSION_bio(bp,s_id) ASN1_i2d_bio_of(SSL_SESSION,i2d_SSL_SESSION,bp,s_id) SSL_SESSION *PEM_read_bio_SSL_SESSION(BIO *bp, SSL_SESSION **x, pem_password_cb *cb, void *u); SSL_SESSION *PEM_read_SSL_SESSION(FILE *fp, SSL_SESSION **x, pem_password_cb *cb, void *u); int PEM_write_bio_SSL_SESSION(BIO *bp, SSL_SESSION *x); int PEM_write_SSL_SESSION(FILE *fp, SSL_SESSION *x); #define SSL_AD_REASON_OFFSET 1000 #define SSL_AD_CLOSE_NOTIFY SSL3_AD_CLOSE_NOTIFY #define SSL_AD_UNEXPECTED_MESSAGE SSL3_AD_UNEXPECTED_MESSAGE #define SSL_AD_BAD_RECORD_MAC SSL3_AD_BAD_RECORD_MAC #define SSL_AD_DECRYPTION_FAILED TLS1_AD_DECRYPTION_FAILED #define SSL_AD_RECORD_OVERFLOW TLS1_AD_RECORD_OVERFLOW #define SSL_AD_DECOMPRESSION_FAILURE SSL3_AD_DECOMPRESSION_FAILURE #define SSL_AD_HANDSHAKE_FAILURE SSL3_AD_HANDSHAKE_FAILURE #define SSL_AD_NO_CERTIFICATE SSL3_AD_NO_CERTIFICATE #define SSL_AD_BAD_CERTIFICATE SSL3_AD_BAD_CERTIFICATE #define SSL_AD_UNSUPPORTED_CERTIFICATE SSL3_AD_UNSUPPORTED_CERTIFICATE #define SSL_AD_CERTIFICATE_REVOKED SSL3_AD_CERTIFICATE_REVOKED #define SSL_AD_CERTIFICATE_EXPIRED SSL3_AD_CERTIFICATE_EXPIRED #define SSL_AD_CERTIFICATE_UNKNOWN SSL3_AD_CERTIFICATE_UNKNOWN #define SSL_AD_ILLEGAL_PARAMETER SSL3_AD_ILLEGAL_PARAMETER #define SSL_AD_UNKNOWN_CA TLS1_AD_UNKNOWN_CA #define SSL_AD_ACCESS_DENIED TLS1_AD_ACCESS_DENIED #define SSL_AD_DECODE_ERROR TLS1_AD_DECODE_ERROR #define SSL_AD_DECRYPT_ERROR TLS1_AD_DECRYPT_ERROR #define SSL_AD_EXPORT_RESTRICTION TLS1_AD_EXPORT_RESTRICTION #define SSL_AD_PROTOCOL_VERSION TLS1_AD_PROTOCOL_VERSION #define SSL_AD_INSUFFICIENT_SECURITY TLS1_AD_INSUFFICIENT_SECURITY #define SSL_AD_INTERNAL_ERROR TLS1_AD_INTERNAL_ERROR #define SSL_AD_USER_CANCELLED TLS1_AD_USER_CANCELLED #define SSL_AD_NO_RENEGOTIATION TLS1_AD_NO_RENEGOTIATION #define SSL_AD_UNSUPPORTED_EXTENSION TLS1_AD_UNSUPPORTED_EXTENSION #define SSL_AD_CERTIFICATE_UNOBTAINABLE TLS1_AD_CERTIFICATE_UNOBTAINABLE #define SSL_AD_UNRECOGNIZED_NAME TLS1_AD_UNRECOGNIZED_NAME #define SSL_AD_BAD_CERTIFICATE_STATUS_RESPONSE TLS1_AD_BAD_CERTIFICATE_STATUS_RESPONSE #define SSL_AD_BAD_CERTIFICATE_HASH_VALUE TLS1_AD_BAD_CERTIFICATE_HASH_VALUE #define SSL_AD_UNKNOWN_PSK_IDENTITY TLS1_AD_UNKNOWN_PSK_IDENTITY #define SSL_AD_INAPPROPRIATE_FALLBACK TLS1_AD_INAPPROPRIATE_FALLBACK #define SSL_ERROR_NONE 0 #define SSL_ERROR_SSL 1 #define SSL_ERROR_WANT_READ 2 #define SSL_ERROR_WANT_WRITE 3 #define SSL_ERROR_WANT_X509_LOOKUP 4 #define SSL_ERROR_SYSCALL 5 #define SSL_ERROR_ZERO_RETURN 6 #define SSL_ERROR_WANT_CONNECT 7 #define SSL_ERROR_WANT_ACCEPT 8 #define SSL_CTRL_NEED_TMP_RSA 1 #define SSL_CTRL_SET_TMP_RSA 2 #define SSL_CTRL_SET_TMP_DH 3 #define SSL_CTRL_SET_TMP_ECDH 4 #define SSL_CTRL_SET_TMP_RSA_CB 5 #define SSL_CTRL_SET_TMP_DH_CB 6 #define SSL_CTRL_SET_TMP_ECDH_CB 7 #define SSL_CTRL_GET_SESSION_REUSED 8 #define SSL_CTRL_GET_CLIENT_CERT_REQUEST 9 #define SSL_CTRL_GET_NUM_RENEGOTIATIONS 10 #define SSL_CTRL_CLEAR_NUM_RENEGOTIATIONS 11 #define SSL_CTRL_GET_TOTAL_RENEGOTIATIONS 12 #define SSL_CTRL_GET_FLAGS 13 #define SSL_CTRL_EXTRA_CHAIN_CERT 14 #define SSL_CTRL_SET_MSG_CALLBACK 15 #define SSL_CTRL_SET_MSG_CALLBACK_ARG 16 #define SSL_CTRL_SET_MTU 17 #define SSL_CTRL_SESS_NUMBER 20 #define SSL_CTRL_SESS_CONNECT 21 #define SSL_CTRL_SESS_CONNECT_GOOD 22 #define SSL_CTRL_SESS_CONNECT_RENEGOTIATE 23 #define SSL_CTRL_SESS_ACCEPT 24 #define SSL_CTRL_SESS_ACCEPT_GOOD 25 #define SSL_CTRL_SESS_ACCEPT_RENEGOTIATE 26 #define SSL_CTRL_SESS_HIT 27 #define SSL_CTRL_SESS_CB_HIT 28 #define SSL_CTRL_SESS_MISSES 29 #define SSL_CTRL_SESS_TIMEOUTS 30 #define SSL_CTRL_SESS_CACHE_FULL 31 #define SSL_CTRL_OPTIONS 32 #define SSL_CTRL_MODE 33 #define SSL_CTRL_GET_READ_AHEAD 40 #define SSL_CTRL_SET_READ_AHEAD 41 #define SSL_CTRL_SET_SESS_CACHE_SIZE 42 #define SSL_CTRL_GET_SESS_CACHE_SIZE 43 #define SSL_CTRL_SET_SESS_CACHE_MODE 44 #define SSL_CTRL_GET_SESS_CACHE_MODE 45 #define SSL_CTRL_GET_MAX_CERT_LIST 50 #define SSL_CTRL_SET_MAX_CERT_LIST 51 #define SSL_CTRL_SET_MAX_SEND_FRAGMENT 52 #define SSL_CTRL_SET_TLSEXT_SERVERNAME_CB 53 #define SSL_CTRL_SET_TLSEXT_SERVERNAME_ARG 54 #define SSL_CTRL_SET_TLSEXT_HOSTNAME 55 #define SSL_CTRL_SET_TLSEXT_DEBUG_CB 56 #define SSL_CTRL_SET_TLSEXT_DEBUG_ARG 57 #define SSL_CTRL_GET_TLSEXT_TICKET_KEYS 58 #define SSL_CTRL_SET_TLSEXT_TICKET_KEYS 59 #define SSL_CTRL_SET_TLSEXT_OPAQUE_PRF_INPUT 60 #define SSL_CTRL_SET_TLSEXT_OPAQUE_PRF_INPUT_CB 61 #define SSL_CTRL_SET_TLSEXT_OPAQUE_PRF_INPUT_CB_ARG 62 #define SSL_CTRL_SET_TLSEXT_STATUS_REQ_CB 63 #define SSL_CTRL_SET_TLSEXT_STATUS_REQ_CB_ARG 64 #define SSL_CTRL_SET_TLSEXT_STATUS_REQ_TYPE 65 #define SSL_CTRL_GET_TLSEXT_STATUS_REQ_EXTS 66 #define SSL_CTRL_SET_TLSEXT_STATUS_REQ_EXTS 67 #define SSL_CTRL_GET_TLSEXT_STATUS_REQ_IDS 68 #define SSL_CTRL_SET_TLSEXT_STATUS_REQ_IDS 69 #define SSL_CTRL_GET_TLSEXT_STATUS_REQ_OCSP_RESP 70 #define SSL_CTRL_SET_TLSEXT_STATUS_REQ_OCSP_RESP 71 #define SSL_CTRL_SET_TLSEXT_TICKET_KEY_CB 72 #define SSL_CTRL_SET_TLS_EXT_SRP_USERNAME_CB 75 #define SSL_CTRL_SET_SRP_VERIFY_PARAM_CB 76 #define SSL_CTRL_SET_SRP_GIVE_CLIENT_PWD_CB 77 #define SSL_CTRL_SET_SRP_ARG 78 #define SSL_CTRL_SET_TLS_EXT_SRP_USERNAME 79 #define SSL_CTRL_SET_TLS_EXT_SRP_STRENGTH 80 #define SSL_CTRL_SET_TLS_EXT_SRP_PASSWORD 81 #define SSL_CTRL_TLS_EXT_SEND_HEARTBEAT 85 #define SSL_CTRL_GET_TLS_EXT_HEARTBEAT_PENDING 86 #define SSL_CTRL_SET_TLS_EXT_HEARTBEAT_NO_REQUESTS 87 #define DTLS_CTRL_GET_TIMEOUT 73 #define DTLS_CTRL_HANDLE_TIMEOUT 74 #define DTLS_CTRL_LISTEN 75 #define SSL_CTRL_GET_RI_SUPPORT 76 #define SSL_CTRL_CLEAR_OPTIONS 77 #define SSL_CTRL_CLEAR_MODE 78 #define SSL_CTRL_GET_EXTRA_CHAIN_CERTS 82 #define SSL_CTRL_CLEAR_EXTRA_CHAIN_CERTS 83 #define SSL_CTRL_CHECK_PROTO_VERSION 119 #define DTLSv1_get_timeout(ssl,arg) SSL_ctrl(ssl,DTLS_CTRL_GET_TIMEOUT,0, (void *)arg) #define DTLSv1_handle_timeout(ssl) SSL_ctrl(ssl,DTLS_CTRL_HANDLE_TIMEOUT,0, NULL) #define DTLSv1_listen(ssl,peer) SSL_ctrl(ssl,DTLS_CTRL_LISTEN,0, (void *)peer) #define SSL_session_reused(ssl) SSL_ctrl((ssl),SSL_CTRL_GET_SESSION_REUSED,0,NULL) #define SSL_num_renegotiations(ssl) SSL_ctrl((ssl),SSL_CTRL_GET_NUM_RENEGOTIATIONS,0,NULL) #define SSL_clear_num_renegotiations(ssl) SSL_ctrl((ssl),SSL_CTRL_CLEAR_NUM_RENEGOTIATIONS,0,NULL) #define SSL_total_renegotiations(ssl) SSL_ctrl((ssl),SSL_CTRL_GET_TOTAL_RENEGOTIATIONS,0,NULL) #define SSL_CTX_need_tmp_RSA(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_NEED_TMP_RSA,0,NULL) #define SSL_CTX_set_tmp_rsa(ctx,rsa) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_TMP_RSA,0,(char *)rsa) #define SSL_CTX_set_tmp_dh(ctx,dh) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_TMP_DH,0,(char *)dh) #define SSL_CTX_set_tmp_ecdh(ctx,ecdh) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_TMP_ECDH,0,(char *)ecdh) #define SSL_need_tmp_RSA(ssl) SSL_ctrl(ssl,SSL_CTRL_NEED_TMP_RSA,0,NULL) #define SSL_set_tmp_rsa(ssl,rsa) SSL_ctrl(ssl,SSL_CTRL_SET_TMP_RSA,0,(char *)rsa) #define SSL_set_tmp_dh(ssl,dh) SSL_ctrl(ssl,SSL_CTRL_SET_TMP_DH,0,(char *)dh) #define SSL_set_tmp_ecdh(ssl,ecdh) SSL_ctrl(ssl,SSL_CTRL_SET_TMP_ECDH,0,(char *)ecdh) #define SSL_CTX_add_extra_chain_cert(ctx,x509) SSL_CTX_ctrl(ctx,SSL_CTRL_EXTRA_CHAIN_CERT,0,(char *)x509) #define SSL_CTX_get_extra_chain_certs(ctx,px509) SSL_CTX_ctrl(ctx,SSL_CTRL_GET_EXTRA_CHAIN_CERTS,0,px509) #define SSL_CTX_clear_extra_chain_certs(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_CLEAR_EXTRA_CHAIN_CERTS,0,NULL) BIO_METHOD *BIO_f_ssl(void); BIO *BIO_new_ssl(SSL_CTX *ctx,int client); BIO *BIO_new_ssl_connect(SSL_CTX *ctx); BIO *BIO_new_buffer_ssl_connect(SSL_CTX *ctx); int BIO_ssl_copy_session_id(BIO *to,BIO *from); void BIO_ssl_shutdown(BIO *ssl_bio); int SSL_CTX_set_cipher_list(SSL_CTX *,const char *str); SSL_CTX *SSL_CTX_new(const SSL_METHOD *meth); void SSL_CTX_free(SSL_CTX *); long SSL_CTX_set_timeout(SSL_CTX *ctx,long t); long SSL_CTX_get_timeout(const SSL_CTX *ctx); X509_STORE *SSL_CTX_get_cert_store(const SSL_CTX *); void SSL_CTX_set_cert_store(SSL_CTX *,X509_STORE *); int SSL_want(const SSL *s); int SSL_clear(SSL *s); void SSL_CTX_flush_sessions(SSL_CTX *ctx,long tm); const SSL_CIPHER *SSL_get_current_cipher(const SSL *s); int SSL_CIPHER_get_bits(const SSL_CIPHER *c,int *alg_bits); char * SSL_CIPHER_get_version(const SSL_CIPHER *c); const char * SSL_CIPHER_get_name(const SSL_CIPHER *c); unsigned long SSL_CIPHER_get_id(const SSL_CIPHER *c); int SSL_get_fd(const SSL *s); int SSL_get_rfd(const SSL *s); int SSL_get_wfd(const SSL *s); const char * SSL_get_cipher_list(const SSL *s,int n); char * SSL_get_shared_ciphers(const SSL *s, char *buf, int len); int SSL_get_read_ahead(const SSL * s); int SSL_pending(const SSL *s); int SSL_set_fd(SSL *s, int fd); int SSL_set_rfd(SSL *s, int fd); int SSL_set_wfd(SSL *s, int fd); void SSL_set_bio(SSL *s, BIO *rbio,BIO *wbio); BIO * SSL_get_rbio(const SSL *s); BIO * SSL_get_wbio(const SSL *s); int SSL_set_cipher_list(SSL *s, const char *str); void SSL_set_read_ahead(SSL *s, int yes); int SSL_get_verify_mode(const SSL *s); int SSL_get_verify_depth(const SSL *s); int (*SSL_get_verify_callback(const SSL *s))(int,X509_STORE_CTX *); void SSL_set_verify(SSL *s, int mode, int (*callback)(int ok,X509_STORE_CTX *ctx)); void SSL_set_verify_depth(SSL *s, int depth); int SSL_use_RSAPrivateKey(SSL *ssl, RSA *rsa); int SSL_use_RSAPrivateKey_ASN1(SSL *ssl, unsigned char *d, long len); int SSL_use_PrivateKey(SSL *ssl, EVP_PKEY *pkey); int SSL_use_PrivateKey_ASN1(int pk,SSL *ssl, const unsigned char *d, long len); int SSL_use_certificate(SSL *ssl, X509 *x); int SSL_use_certificate_ASN1(SSL *ssl, const unsigned char *d, int len); int SSL_use_RSAPrivateKey_file(SSL *ssl, const char *file, int type); int SSL_use_PrivateKey_file(SSL *ssl, const char *file, int type); int SSL_use_certificate_file(SSL *ssl, const char *file, int type); int SSL_CTX_use_RSAPrivateKey_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_PrivateKey_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_certificate_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_certificate_chain_file(SSL_CTX *ctx, const char *file); struct stack_st_X509_NAME *SSL_load_client_CA_file(const char *file); int SSL_add_file_cert_subjects_to_stack(struct stack_st_X509_NAME *stackCAs, const char *file); int SSL_add_dir_cert_subjects_to_stack(struct stack_st_X509_NAME *stackCAs, const char *dir); void SSL_load_error_strings(void ); const char *SSL_state_string(const SSL *s); const char *SSL_rstate_string(const SSL *s); const char *SSL_state_string_long(const SSL *s); const char *SSL_rstate_string_long(const SSL *s); long SSL_SESSION_get_time(const SSL_SESSION *s); long SSL_SESSION_set_time(SSL_SESSION *s, long t); long SSL_SESSION_get_timeout(const SSL_SESSION *s); long SSL_SESSION_set_timeout(SSL_SESSION *s, long t); void SSL_copy_session_id(SSL *to,const SSL *from); X509 *SSL_SESSION_get0_peer(SSL_SESSION *s); int SSL_SESSION_set1_id_context(SSL_SESSION *s,const unsigned char *sid_ctx, unsigned int sid_ctx_len); SSL_SESSION *SSL_SESSION_new(void); const unsigned char *SSL_SESSION_get_id(const SSL_SESSION *s, unsigned int *len); unsigned int SSL_SESSION_get_compress_id(const SSL_SESSION *s); int SSL_SESSION_print_fp(FILE *fp,const SSL_SESSION *ses); int SSL_SESSION_print(BIO *fp,const SSL_SESSION *ses); void SSL_SESSION_free(SSL_SESSION *ses); int i2d_SSL_SESSION(SSL_SESSION *in,unsigned char **pp); int SSL_set_session(SSL *to, SSL_SESSION *session); int SSL_CTX_add_session(SSL_CTX *s, SSL_SESSION *c); int SSL_CTX_remove_session(SSL_CTX *,SSL_SESSION *c); int SSL_CTX_set_generate_session_id(SSL_CTX *, GEN_SESSION_CB); int SSL_set_generate_session_id(SSL *, GEN_SESSION_CB); int SSL_has_matching_session_id(const SSL *ssl, const unsigned char *id, unsigned int id_len); SSL_SESSION *d2i_SSL_SESSION(SSL_SESSION **a,const unsigned char **pp, long length); X509 * SSL_get_peer_certificate(const SSL *s); struct stack_st_X509 *SSL_get_peer_cert_chain(const SSL *s); int SSL_CTX_get_verify_mode(const SSL_CTX *ctx); int SSL_CTX_get_verify_depth(const SSL_CTX *ctx); int (*SSL_CTX_get_verify_callback(const SSL_CTX *ctx))(int,X509_STORE_CTX *); void SSL_CTX_set_verify(SSL_CTX *ctx,int mode, int (*callback)(int, X509_STORE_CTX *)); void SSL_CTX_set_verify_depth(SSL_CTX *ctx,int depth); void SSL_CTX_set_cert_verify_callback(SSL_CTX *ctx, int (*cb)(X509_STORE_CTX *,void *), void *arg); int SSL_CTX_use_RSAPrivateKey(SSL_CTX *ctx, RSA *rsa); int SSL_CTX_use_RSAPrivateKey_ASN1(SSL_CTX *ctx, const unsigned char *d, long len); int SSL_CTX_use_PrivateKey(SSL_CTX *ctx, EVP_PKEY *pkey); int SSL_CTX_use_PrivateKey_ASN1(int pk,SSL_CTX *ctx, const unsigned char *d, long len); int SSL_CTX_use_certificate(SSL_CTX *ctx, X509 *x); int SSL_CTX_use_certificate_ASN1(SSL_CTX *ctx, int len, const unsigned char *d); void SSL_CTX_set_default_passwd_cb(SSL_CTX *ctx, pem_password_cb *cb); void SSL_CTX_set_default_passwd_cb_userdata(SSL_CTX *ctx, void *u); int SSL_CTX_check_private_key(const SSL_CTX *ctx); int SSL_check_private_key(const SSL *ctx); int SSL_CTX_set_session_id_context(SSL_CTX *ctx,const unsigned char *sid_ctx, unsigned int sid_ctx_len); SSL * SSL_new(SSL_CTX *ctx); int SSL_set_session_id_context(SSL *ssl,const unsigned char *sid_ctx, unsigned int sid_ctx_len); int SSL_CTX_set_purpose(SSL_CTX *s, int purpose); int SSL_set_purpose(SSL *s, int purpose); int SSL_CTX_set_trust(SSL_CTX *s, int trust); int SSL_set_trust(SSL *s, int trust); int SSL_CTX_set1_param(SSL_CTX *ctx, X509_VERIFY_PARAM *vpm); int SSL_set1_param(SSL *ssl, X509_VERIFY_PARAM *vpm); int SSL_CTX_set_srp_username(SSL_CTX *ctx,char *name); int SSL_CTX_set_srp_password(SSL_CTX *ctx,char *password); int SSL_CTX_set_srp_strength(SSL_CTX *ctx, int strength); int SSL_CTX_set_srp_client_pwd_callback(SSL_CTX *ctx, char *(*cb)(SSL *,void *)); int SSL_CTX_set_srp_verify_param_callback(SSL_CTX *ctx, int (*cb)(SSL *,void *)); int SSL_CTX_set_srp_username_callback(SSL_CTX *ctx, int (*cb)(SSL *,int *,void *)); int SSL_CTX_set_srp_cb_arg(SSL_CTX *ctx, void *arg); int SSL_set_srp_server_param(SSL *s, const BIGNUM *N, const BIGNUM *g, BIGNUM *sa, BIGNUM *v, char *info); int SSL_set_srp_server_param_pw(SSL *s, const char *user, const char *pass, const char *grp); BIGNUM *SSL_get_srp_g(SSL *s); BIGNUM *SSL_get_srp_N(SSL *s); char *SSL_get_srp_username(SSL *s); char *SSL_get_srp_userinfo(SSL *s); void SSL_free(SSL *ssl); int SSL_accept(SSL *ssl); int SSL_connect(SSL *ssl); int SSL_read(SSL *ssl,void *buf,int num); int SSL_peek(SSL *ssl,void *buf,int num); int SSL_write(SSL *ssl,const void *buf,int num); long SSL_ctrl(SSL *ssl,int cmd, long larg, void *parg); long SSL_callback_ctrl(SSL *, int, void (*)(void)); long SSL_CTX_ctrl(SSL_CTX *ctx,int cmd, long larg, void *parg); long SSL_CTX_callback_ctrl(SSL_CTX *, int, void (*)(void)); int SSL_get_error(const SSL *s,int ret_code); const char *SSL_get_version(const SSL *s); int SSL_CTX_set_ssl_version(SSL_CTX *ctx, const SSL_METHOD *meth); const SSL_METHOD *SSLv3_method(void); const SSL_METHOD *SSLv3_server_method(void); const SSL_METHOD *SSLv3_client_method(void); const SSL_METHOD *SSLv23_method(void); const SSL_METHOD *SSLv23_server_method(void); const SSL_METHOD *SSLv23_client_method(void); const SSL_METHOD *TLSv1_method(void); const SSL_METHOD *TLSv1_server_method(void); const SSL_METHOD *TLSv1_client_method(void); const SSL_METHOD *TLSv1_1_method(void); const SSL_METHOD *TLSv1_1_server_method(void); const SSL_METHOD *TLSv1_1_client_method(void); const SSL_METHOD *TLSv1_2_method(void); const SSL_METHOD *TLSv1_2_server_method(void); const SSL_METHOD *TLSv1_2_client_method(void); const SSL_METHOD *DTLSv1_method(void); const SSL_METHOD *DTLSv1_server_method(void); const SSL_METHOD *DTLSv1_client_method(void); struct stack_st_SSL_CIPHER *SSL_get_ciphers(const SSL *s); int SSL_do_handshake(SSL *s); int SSL_renegotiate(SSL *s); int SSL_renegotiate_abbreviated(SSL *s); int SSL_renegotiate_pending(SSL *s); int SSL_shutdown(SSL *s); const SSL_METHOD *SSL_get_ssl_method(SSL *s); int SSL_set_ssl_method(SSL *s, const SSL_METHOD *method); const char *SSL_alert_type_string_long(int value); const char *SSL_alert_type_string(int value); const char *SSL_alert_desc_string_long(int value); const char *SSL_alert_desc_string(int value); void SSL_set_client_CA_list(SSL *s, struct stack_st_X509_NAME *name_list); void SSL_CTX_set_client_CA_list(SSL_CTX *ctx, struct stack_st_X509_NAME *name_list); struct stack_st_X509_NAME *SSL_get_client_CA_list(const SSL *s); struct stack_st_X509_NAME *SSL_CTX_get_client_CA_list(const SSL_CTX *s); int SSL_add_client_CA(SSL *ssl,X509 *x); int SSL_CTX_add_client_CA(SSL_CTX *ctx,X509 *x); void SSL_set_connect_state(SSL *s); void SSL_set_accept_state(SSL *s); long SSL_get_default_timeout(const SSL *s); int SSL_library_init(void ); char *SSL_CIPHER_description(const SSL_CIPHER *,char *buf,int size); struct stack_st_X509_NAME *SSL_dup_CA_list(struct stack_st_X509_NAME *sk); SSL *SSL_dup(SSL *ssl); X509 *SSL_get_certificate(const SSL *ssl); struct evp_pkey_st *SSL_get_privatekey(SSL *ssl); void SSL_CTX_set_quiet_shutdown(SSL_CTX *ctx,int mode); int SSL_CTX_get_quiet_shutdown(const SSL_CTX *ctx); void SSL_set_quiet_shutdown(SSL *ssl,int mode); int SSL_get_quiet_shutdown(const SSL *ssl); void SSL_set_shutdown(SSL *ssl,int mode); int SSL_get_shutdown(const SSL *ssl); int SSL_version(const SSL *ssl); int SSL_CTX_set_default_verify_paths(SSL_CTX *ctx); int SSL_CTX_load_verify_locations(SSL_CTX *ctx, const char *CAfile, const char *CApath); #define SSL_get0_session SSL_get_session SSL_SESSION *SSL_get_session(const SSL *ssl); SSL_SESSION *SSL_get1_session(SSL *ssl); SSL_CTX *SSL_get_SSL_CTX(const SSL *ssl); SSL_CTX *SSL_set_SSL_CTX(SSL *ssl, SSL_CTX* ctx); void SSL_set_info_callback(SSL *ssl, void (*cb)(const SSL *ssl,int type,int val)); void (*SSL_get_info_callback(const SSL *ssl))(const SSL *ssl,int type,int val); int SSL_state(const SSL *ssl); void SSL_set_state(SSL *ssl, int state); void SSL_set_verify_result(SSL *ssl,long v); long SSL_get_verify_result(const SSL *ssl); int SSL_set_ex_data(SSL *ssl,int idx,void *data); void *SSL_get_ex_data(const SSL *ssl,int idx); int SSL_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_SESSION_set_ex_data(SSL_SESSION *ss,int idx,void *data); void *SSL_SESSION_get_ex_data(const SSL_SESSION *ss,int idx); int SSL_SESSION_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_CTX_set_ex_data(SSL_CTX *ssl,int idx,void *data); void *SSL_CTX_get_ex_data(const SSL_CTX *ssl,int idx); int SSL_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_get_ex_data_X509_STORE_CTX_idx(void ); #define SSL_CTX_sess_set_cache_size(ctx,t) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_SESS_CACHE_SIZE,t,NULL) #define SSL_CTX_sess_get_cache_size(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_GET_SESS_CACHE_SIZE,0,NULL) #define SSL_CTX_set_session_cache_mode(ctx,m) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_SESS_CACHE_MODE,m,NULL) #define SSL_CTX_get_session_cache_mode(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_GET_SESS_CACHE_MODE,0,NULL) #define SSL_CTX_get_default_read_ahead(ctx) SSL_CTX_get_read_ahead(ctx) #define SSL_CTX_set_default_read_ahead(ctx,m) SSL_CTX_set_read_ahead(ctx,m) #define SSL_CTX_get_read_ahead(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_GET_READ_AHEAD,0,NULL) #define SSL_CTX_set_read_ahead(ctx,m) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_READ_AHEAD,m,NULL) #define SSL_CTX_get_max_cert_list(ctx) SSL_CTX_ctrl(ctx,SSL_CTRL_GET_MAX_CERT_LIST,0,NULL) #define SSL_CTX_set_max_cert_list(ctx,m) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_MAX_CERT_LIST,m,NULL) #define SSL_get_max_cert_list(ssl) SSL_ctrl(ssl,SSL_CTRL_GET_MAX_CERT_LIST,0,NULL) #define SSL_set_max_cert_list(ssl,m) SSL_ctrl(ssl,SSL_CTRL_SET_MAX_CERT_LIST,m,NULL) #define SSL_CTX_set_max_send_fragment(ctx,m) SSL_CTX_ctrl(ctx,SSL_CTRL_SET_MAX_SEND_FRAGMENT,m,NULL) #define SSL_set_max_send_fragment(ssl,m) SSL_ctrl(ssl,SSL_CTRL_SET_MAX_SEND_FRAGMENT,m,NULL) void SSL_CTX_set_tmp_rsa_callback(SSL_CTX *ctx, RSA *(*cb)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_rsa_callback(SSL *ssl, RSA *(*cb)(SSL *ssl,int is_export, int keylength)); void SSL_CTX_set_tmp_dh_callback(SSL_CTX *ctx, DH *(*dh)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_dh_callback(SSL *ssl, DH *(*dh)(SSL *ssl,int is_export, int keylength)); void SSL_CTX_set_tmp_ecdh_callback(SSL_CTX *ctx, EC_KEY *(*ecdh)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_ecdh_callback(SSL *ssl, EC_KEY *(*ecdh)(SSL *ssl,int is_export, int keylength)); const COMP_METHOD *SSL_get_current_compression(SSL *s); const COMP_METHOD *SSL_get_current_expansion(SSL *s); const char *SSL_COMP_get_name(const COMP_METHOD *comp); struct stack_st_SSL_COMP *SSL_COMP_get_compression_methods(void); int SSL_COMP_add_compression_method(int id,COMP_METHOD *cm); # 2039 "/usr/include/openssl/ssl.h" 3 4 int SSL_set_session_ticket_ext(SSL *s, void *ext_data, int ext_len); int SSL_set_session_ticket_ext_cb(SSL *s, tls_session_ticket_ext_cb_fn cb, void *arg); int SSL_set_session_secret_cb(SSL *s, tls_session_secret_cb_fn tls_session_secret_cb, void *arg); void SSL_set_debug(SSL *s, int debug); int SSL_cache_hit(SSL *s); void ERR_load_SSL_strings(void); #define SSL_F_CLIENT_CERTIFICATE 100 #define SSL_F_CLIENT_FINISHED 167 #define SSL_F_CLIENT_HELLO 101 #define SSL_F_CLIENT_MASTER_KEY 102 #define SSL_F_D2I_SSL_SESSION 103 #define SSL_F_DO_DTLS1_WRITE 245 #define SSL_F_DO_SSL3_WRITE 104 #define SSL_F_DTLS1_ACCEPT 246 #define SSL_F_DTLS1_ADD_CERT_TO_BUF 295 #define SSL_F_DTLS1_BUFFER_RECORD 247 #define SSL_F_DTLS1_CLIENT_HELLO 248 #define SSL_F_DTLS1_CONNECT 249 #define SSL_F_DTLS1_ENC 250 #define SSL_F_DTLS1_GET_HELLO_VERIFY 251 #define SSL_F_DTLS1_GET_MESSAGE 252 #define SSL_F_DTLS1_GET_MESSAGE_FRAGMENT 253 #define SSL_F_DTLS1_GET_RECORD 254 #define SSL_F_DTLS1_HANDLE_TIMEOUT 297 #define SSL_F_DTLS1_HEARTBEAT 305 #define SSL_F_DTLS1_OUTPUT_CERT_CHAIN 255 #define SSL_F_DTLS1_PREPROCESS_FRAGMENT 288 #define SSL_F_DTLS1_PROCESS_BUFFERED_RECORDS 424 #define SSL_F_DTLS1_PROCESS_OUT_OF_SEQ_MESSAGE 256 #define SSL_F_DTLS1_PROCESS_RECORD 257 #define SSL_F_DTLS1_READ_BYTES 258 #define SSL_F_DTLS1_READ_FAILED 259 #define SSL_F_DTLS1_SEND_CERTIFICATE_REQUEST 260 #define SSL_F_DTLS1_SEND_CLIENT_CERTIFICATE 261 #define SSL_F_DTLS1_SEND_CLIENT_KEY_EXCHANGE 262 #define SSL_F_DTLS1_SEND_CLIENT_VERIFY 263 #define SSL_F_DTLS1_SEND_HELLO_VERIFY_REQUEST 264 #define SSL_F_DTLS1_SEND_SERVER_CERTIFICATE 265 #define SSL_F_DTLS1_SEND_SERVER_HELLO 266 #define SSL_F_DTLS1_SEND_SERVER_KEY_EXCHANGE 267 #define SSL_F_DTLS1_WRITE_APP_DATA_BYTES 268 #define SSL_F_GET_CLIENT_FINISHED 105 #define SSL_F_GET_CLIENT_HELLO 106 #define SSL_F_GET_CLIENT_MASTER_KEY 107 #define SSL_F_GET_SERVER_FINISHED 108 #define SSL_F_GET_SERVER_HELLO 109 #define SSL_F_GET_SERVER_VERIFY 110 #define SSL_F_I2D_SSL_SESSION 111 #define SSL_F_READ_N 112 #define SSL_F_REQUEST_CERTIFICATE 113 #define SSL_F_SERVER_FINISH 239 #define SSL_F_SERVER_HELLO 114 #define SSL_F_SERVER_VERIFY 240 #define SSL_F_SSL23_ACCEPT 115 #define SSL_F_SSL23_CLIENT_HELLO 116 #define SSL_F_SSL23_CONNECT 117 #define SSL_F_SSL23_GET_CLIENT_HELLO 118 #define SSL_F_SSL23_GET_SERVER_HELLO 119 #define SSL_F_SSL23_PEEK 237 #define SSL_F_SSL23_READ 120 #define SSL_F_SSL23_WRITE 121 #define SSL_F_SSL2_ACCEPT 122 #define SSL_F_SSL2_CONNECT 123 #define SSL_F_SSL2_ENC_INIT 124 #define SSL_F_SSL2_GENERATE_KEY_MATERIAL 241 #define SSL_F_SSL2_PEEK 234 #define SSL_F_SSL2_READ 125 #define SSL_F_SSL2_READ_INTERNAL 236 #define SSL_F_SSL2_SET_CERTIFICATE 126 #define SSL_F_SSL2_WRITE 127 #define SSL_F_SSL3_ACCEPT 128 #define SSL_F_SSL3_ADD_CERT_TO_BUF 296 #define SSL_F_SSL3_CALLBACK_CTRL 233 #define SSL_F_SSL3_CHANGE_CIPHER_STATE 129 #define SSL_F_SSL3_CHECK_CERT_AND_ALGORITHM 130 #define SSL_F_SSL3_CHECK_CLIENT_HELLO 304 #define SSL_F_SSL3_CLIENT_HELLO 131 #define SSL_F_SSL3_CONNECT 132 #define SSL_F_SSL3_CTRL 213 #define SSL_F_SSL3_CTX_CTRL 133 #define SSL_F_SSL3_DIGEST_CACHED_RECORDS 293 #define SSL_F_SSL3_DO_CHANGE_CIPHER_SPEC 292 #define SSL_F_SSL3_ENC 134 #define SSL_F_SSL3_GENERATE_KEY_BLOCK 238 #define SSL_F_SSL3_GET_CERTIFICATE_REQUEST 135 #define SSL_F_SSL3_GET_CERT_STATUS 289 #define SSL_F_SSL3_GET_CERT_VERIFY 136 #define SSL_F_SSL3_GET_CLIENT_CERTIFICATE 137 #define SSL_F_SSL3_GET_CLIENT_HELLO 138 #define SSL_F_SSL3_GET_CLIENT_KEY_EXCHANGE 139 #define SSL_F_SSL3_GET_FINISHED 140 #define SSL_F_SSL3_GET_KEY_EXCHANGE 141 #define SSL_F_SSL3_GET_MESSAGE 142 #define SSL_F_SSL3_GET_NEW_SESSION_TICKET 283 #define SSL_F_SSL3_GET_NEXT_PROTO 306 #define SSL_F_SSL3_GET_RECORD 143 #define SSL_F_SSL3_GET_SERVER_CERTIFICATE 144 #define SSL_F_SSL3_GET_SERVER_DONE 145 #define SSL_F_SSL3_GET_SERVER_HELLO 146 #define SSL_F_SSL3_HANDSHAKE_MAC 285 #define SSL_F_SSL3_NEW_SESSION_TICKET 287 #define SSL_F_SSL3_OUTPUT_CERT_CHAIN 147 #define SSL_F_SSL3_PEEK 235 #define SSL_F_SSL3_READ_BYTES 148 #define SSL_F_SSL3_READ_N 149 #define SSL_F_SSL3_SEND_CERTIFICATE_REQUEST 150 #define SSL_F_SSL3_SEND_CLIENT_CERTIFICATE 151 #define SSL_F_SSL3_SEND_CLIENT_KEY_EXCHANGE 152 #define SSL_F_SSL3_SEND_CLIENT_VERIFY 153 #define SSL_F_SSL3_SEND_SERVER_CERTIFICATE 154 #define SSL_F_SSL3_SEND_SERVER_HELLO 242 #define SSL_F_SSL3_SEND_SERVER_KEY_EXCHANGE 155 #define SSL_F_SSL3_SETUP_KEY_BLOCK 157 #define SSL_F_SSL3_SETUP_READ_BUFFER 156 #define SSL_F_SSL3_SETUP_WRITE_BUFFER 291 #define SSL_F_SSL3_WRITE_BYTES 158 #define SSL_F_SSL3_WRITE_PENDING 159 #define SSL_F_SSL_ADD_CLIENTHELLO_RENEGOTIATE_EXT 298 #define SSL_F_SSL_ADD_CLIENTHELLO_TLSEXT 277 #define SSL_F_SSL_ADD_CLIENTHELLO_USE_SRTP_EXT 307 #define SSL_F_SSL_ADD_DIR_CERT_SUBJECTS_TO_STACK 215 #define SSL_F_SSL_ADD_FILE_CERT_SUBJECTS_TO_STACK 216 #define SSL_F_SSL_ADD_SERVERHELLO_RENEGOTIATE_EXT 299 #define SSL_F_SSL_ADD_SERVERHELLO_TLSEXT 278 #define SSL_F_SSL_ADD_SERVERHELLO_USE_SRTP_EXT 308 #define SSL_F_SSL_BAD_METHOD 160 #define SSL_F_SSL_BYTES_TO_CIPHER_LIST 161 #define SSL_F_SSL_CERT_DUP 221 #define SSL_F_SSL_CERT_INST 222 #define SSL_F_SSL_CERT_INSTANTIATE 214 #define SSL_F_SSL_CERT_NEW 162 #define SSL_F_SSL_CHECK_PRIVATE_KEY 163 #define SSL_F_SSL_CHECK_SERVERHELLO_TLSEXT 280 #define SSL_F_SSL_CHECK_SRVR_ECC_CERT_AND_ALG 279 #define SSL_F_SSL_CIPHER_PROCESS_RULESTR 230 #define SSL_F_SSL_CIPHER_STRENGTH_SORT 231 #define SSL_F_SSL_CLEAR 164 #define SSL_F_SSL_COMP_ADD_COMPRESSION_METHOD 165 #define SSL_F_SSL_CREATE_CIPHER_LIST 166 #define SSL_F_SSL_CTRL 232 #define SSL_F_SSL_CTX_CHECK_PRIVATE_KEY 168 #define SSL_F_SSL_CTX_MAKE_PROFILES 309 #define SSL_F_SSL_CTX_NEW 169 #define SSL_F_SSL_CTX_SET_CIPHER_LIST 269 #define SSL_F_SSL_CTX_SET_CLIENT_CERT_ENGINE 290 #define SSL_F_SSL_CTX_SET_PURPOSE 226 #define SSL_F_SSL_CTX_SET_SESSION_ID_CONTEXT 219 #define SSL_F_SSL_CTX_SET_SSL_VERSION 170 #define SSL_F_SSL_CTX_SET_TRUST 229 #define SSL_F_SSL_CTX_USE_CERTIFICATE 171 #define SSL_F_SSL_CTX_USE_CERTIFICATE_ASN1 172 #define SSL_F_SSL_CTX_USE_CERTIFICATE_CHAIN_FILE 220 #define SSL_F_SSL_CTX_USE_CERTIFICATE_FILE 173 #define SSL_F_SSL_CTX_USE_PRIVATEKEY 174 #define SSL_F_SSL_CTX_USE_PRIVATEKEY_ASN1 175 #define SSL_F_SSL_CTX_USE_PRIVATEKEY_FILE 176 #define SSL_F_SSL_CTX_USE_PSK_IDENTITY_HINT 272 #define SSL_F_SSL_CTX_USE_RSAPRIVATEKEY 177 #define SSL_F_SSL_CTX_USE_RSAPRIVATEKEY_ASN1 178 #define SSL_F_SSL_CTX_USE_RSAPRIVATEKEY_FILE 179 #define SSL_F_SSL_DO_HANDSHAKE 180 #define SSL_F_SSL_GET_NEW_SESSION 181 #define SSL_F_SSL_GET_PREV_SESSION 217 #define SSL_F_SSL_GET_SERVER_SEND_CERT 182 #define SSL_F_SSL_GET_SERVER_SEND_PKEY 317 #define SSL_F_SSL_GET_SIGN_PKEY 183 #define SSL_F_SSL_INIT_WBIO_BUFFER 184 #define SSL_F_SSL_LOAD_CLIENT_CA_FILE 185 #define SSL_F_SSL_NEW 186 #define SSL_F_SSL_PARSE_CLIENTHELLO_RENEGOTIATE_EXT 300 #define SSL_F_SSL_PARSE_CLIENTHELLO_TLSEXT 302 #define SSL_F_SSL_PARSE_CLIENTHELLO_USE_SRTP_EXT 310 #define SSL_F_SSL_PARSE_SERVERHELLO_RENEGOTIATE_EXT 301 #define SSL_F_SSL_PARSE_SERVERHELLO_TLSEXT 303 #define SSL_F_SSL_PARSE_SERVERHELLO_USE_SRTP_EXT 311 #define SSL_F_SSL_PEEK 270 #define SSL_F_SSL_PREPARE_CLIENTHELLO_TLSEXT 281 #define SSL_F_SSL_PREPARE_SERVERHELLO_TLSEXT 282 #define SSL_F_SSL_READ 223 #define SSL_F_SSL_RSA_PRIVATE_DECRYPT 187 #define SSL_F_SSL_RSA_PUBLIC_ENCRYPT 188 #define SSL_F_SSL_SESSION_DUP 348 #define SSL_F_SSL_SESSION_NEW 189 #define SSL_F_SSL_SESSION_PRINT_FP 190 #define SSL_F_SSL_SESSION_SET1_ID_CONTEXT 312 #define SSL_F_SSL_SESS_CERT_NEW 225 #define SSL_F_SSL_SET_CERT 191 #define SSL_F_SSL_SET_CIPHER_LIST 271 #define SSL_F_SSL_SET_FD 192 #define SSL_F_SSL_SET_PKEY 193 #define SSL_F_SSL_SET_PURPOSE 227 #define SSL_F_SSL_SET_RFD 194 #define SSL_F_SSL_SET_SESSION 195 #define SSL_F_SSL_SET_SESSION_ID_CONTEXT 218 #define SSL_F_SSL_SET_SESSION_TICKET_EXT 294 #define SSL_F_SSL_SET_TRUST 228 #define SSL_F_SSL_SET_WFD 196 #define SSL_F_SSL_SHUTDOWN 224 #define SSL_F_SSL_SRP_CTX_INIT 313 #define SSL_F_SSL_UNDEFINED_CONST_FUNCTION 243 #define SSL_F_SSL_UNDEFINED_FUNCTION 197 #define SSL_F_SSL_UNDEFINED_VOID_FUNCTION 244 #define SSL_F_SSL_USE_CERTIFICATE 198 #define SSL_F_SSL_USE_CERTIFICATE_ASN1 199 #define SSL_F_SSL_USE_CERTIFICATE_FILE 200 #define SSL_F_SSL_USE_PRIVATEKEY 201 #define SSL_F_SSL_USE_PRIVATEKEY_ASN1 202 #define SSL_F_SSL_USE_PRIVATEKEY_FILE 203 #define SSL_F_SSL_USE_PSK_IDENTITY_HINT 273 #define SSL_F_SSL_USE_RSAPRIVATEKEY 204 #define SSL_F_SSL_USE_RSAPRIVATEKEY_ASN1 205 #define SSL_F_SSL_USE_RSAPRIVATEKEY_FILE 206 #define SSL_F_SSL_VERIFY_CERT_CHAIN 207 #define SSL_F_SSL_WRITE 208 #define SSL_F_TLS1_CERT_VERIFY_MAC 286 #define SSL_F_TLS1_CHANGE_CIPHER_STATE 209 #define SSL_F_TLS1_CHECK_SERVERHELLO_TLSEXT 274 #define SSL_F_TLS1_ENC 210 #define SSL_F_TLS1_EXPORT_KEYING_MATERIAL 314 #define SSL_F_TLS1_HEARTBEAT 315 #define SSL_F_TLS1_PREPARE_CLIENTHELLO_TLSEXT 275 #define SSL_F_TLS1_PREPARE_SERVERHELLO_TLSEXT 276 #define SSL_F_TLS1_PRF 284 #define SSL_F_TLS1_SETUP_KEY_BLOCK 211 #define SSL_F_WRITE_PENDING 212 #define SSL_R_APP_DATA_IN_HANDSHAKE 100 #define SSL_R_ATTEMPT_TO_REUSE_SESSION_IN_DIFFERENT_CONTEXT 272 #define SSL_R_BAD_ALERT_RECORD 101 #define SSL_R_BAD_AUTHENTICATION_TYPE 102 #define SSL_R_BAD_CHANGE_CIPHER_SPEC 103 #define SSL_R_BAD_CHECKSUM 104 #define SSL_R_BAD_DATA_RETURNED_BY_CALLBACK 106 #define SSL_R_BAD_DECOMPRESSION 107 #define SSL_R_BAD_DH_G_LENGTH 108 #define SSL_R_BAD_DH_PUB_KEY_LENGTH 109 #define SSL_R_BAD_DH_P_LENGTH 110 #define SSL_R_BAD_DIGEST_LENGTH 111 #define SSL_R_BAD_DSA_SIGNATURE 112 #define SSL_R_BAD_ECC_CERT 304 #define SSL_R_BAD_ECDSA_SIGNATURE 305 #define SSL_R_BAD_ECPOINT 306 #define SSL_R_BAD_HANDSHAKE_LENGTH 332 #define SSL_R_BAD_HELLO_REQUEST 105 #define SSL_R_BAD_LENGTH 271 #define SSL_R_BAD_MAC_DECODE 113 #define SSL_R_BAD_MAC_LENGTH 333 #define SSL_R_BAD_MESSAGE_TYPE 114 #define SSL_R_BAD_PACKET_LENGTH 115 #define SSL_R_BAD_PROTOCOL_VERSION_NUMBER 116 #define SSL_R_BAD_PSK_IDENTITY_HINT_LENGTH 316 #define SSL_R_BAD_RESPONSE_ARGUMENT 117 #define SSL_R_BAD_RSA_DECRYPT 118 #define SSL_R_BAD_RSA_ENCRYPT 119 #define SSL_R_BAD_RSA_E_LENGTH 120 #define SSL_R_BAD_RSA_MODULUS_LENGTH 121 #define SSL_R_BAD_RSA_SIGNATURE 122 #define SSL_R_BAD_SIGNATURE 123 #define SSL_R_BAD_SRP_A_LENGTH 347 #define SSL_R_BAD_SRP_B_LENGTH 348 #define SSL_R_BAD_SRP_G_LENGTH 349 #define SSL_R_BAD_SRP_N_LENGTH 350 #define SSL_R_BAD_SRP_S_LENGTH 351 #define SSL_R_BAD_SRTP_MKI_VALUE 352 #define SSL_R_BAD_SRTP_PROTECTION_PROFILE_LIST 353 #define SSL_R_BAD_SSL_FILETYPE 124 #define SSL_R_BAD_SSL_SESSION_ID_LENGTH 125 #define SSL_R_BAD_STATE 126 #define SSL_R_BAD_WRITE_RETRY 127 #define SSL_R_BIO_NOT_SET 128 #define SSL_R_BLOCK_CIPHER_PAD_IS_WRONG 129 #define SSL_R_BN_LIB 130 #define SSL_R_CA_DN_LENGTH_MISMATCH 131 #define SSL_R_CA_DN_TOO_LONG 132 #define SSL_R_CCS_RECEIVED_EARLY 133 #define SSL_R_CERTIFICATE_VERIFY_FAILED 134 #define SSL_R_CERT_LENGTH_MISMATCH 135 #define SSL_R_CHALLENGE_IS_DIFFERENT 136 #define SSL_R_CIPHER_CODE_WRONG_LENGTH 137 #define SSL_R_CIPHER_OR_HASH_UNAVAILABLE 138 #define SSL_R_CIPHER_TABLE_SRC_ERROR 139 #define SSL_R_CLIENTHELLO_TLSEXT 226 #define SSL_R_COMPRESSED_LENGTH_TOO_LONG 140 #define SSL_R_COMPRESSION_DISABLED 343 #define SSL_R_COMPRESSION_FAILURE 141 #define SSL_R_COMPRESSION_ID_NOT_WITHIN_PRIVATE_RANGE 307 #define SSL_R_COMPRESSION_LIBRARY_ERROR 142 #define SSL_R_CONNECTION_ID_IS_DIFFERENT 143 #define SSL_R_CONNECTION_TYPE_NOT_SET 144 #define SSL_R_COOKIE_MISMATCH 308 #define SSL_R_DATA_BETWEEN_CCS_AND_FINISHED 145 #define SSL_R_DATA_LENGTH_TOO_LONG 146 #define SSL_R_DECRYPTION_FAILED 147 #define SSL_R_DECRYPTION_FAILED_OR_BAD_RECORD_MAC 281 #define SSL_R_DH_KEY_TOO_SMALL 372 #define SSL_R_DH_PUBLIC_VALUE_LENGTH_IS_WRONG 148 #define SSL_R_DIGEST_CHECK_FAILED 149 #define SSL_R_DTLS_MESSAGE_TOO_BIG 334 #define SSL_R_DUPLICATE_COMPRESSION_ID 309 #define SSL_R_ECC_CERT_NOT_FOR_KEY_AGREEMENT 317 #define SSL_R_ECC_CERT_NOT_FOR_SIGNING 318 #define SSL_R_ECC_CERT_SHOULD_HAVE_RSA_SIGNATURE 322 #define SSL_R_ECC_CERT_SHOULD_HAVE_SHA1_SIGNATURE 323 #define SSL_R_ECGROUP_TOO_LARGE_FOR_CIPHER 310 #define SSL_R_EMPTY_SRTP_PROTECTION_PROFILE_LIST 354 #define SSL_R_ENCRYPTED_LENGTH_TOO_LONG 150 #define SSL_R_ERROR_GENERATING_TMP_RSA_KEY 282 #define SSL_R_ERROR_IN_RECEIVED_CIPHER_LIST 151 #define SSL_R_EXCESSIVE_MESSAGE_SIZE 152 #define SSL_R_EXTRA_DATA_IN_MESSAGE 153 #define SSL_R_GOT_A_FIN_BEFORE_A_CCS 154 #define SSL_R_GOT_NEXT_PROTO_BEFORE_A_CCS 355 #define SSL_R_GOT_NEXT_PROTO_WITHOUT_EXTENSION 356 #define SSL_R_HTTPS_PROXY_REQUEST 155 #define SSL_R_HTTP_REQUEST 156 #define SSL_R_ILLEGAL_PADDING 283 #define SSL_R_INAPPROPRIATE_FALLBACK 373 #define SSL_R_INCONSISTENT_COMPRESSION 340 #define SSL_R_INVALID_CHALLENGE_LENGTH 158 #define SSL_R_INVALID_COMMAND 280 #define SSL_R_INVALID_COMPRESSION_ALGORITHM 341 #define SSL_R_INVALID_PURPOSE 278 #define SSL_R_INVALID_SRP_USERNAME 357 #define SSL_R_INVALID_STATUS_RESPONSE 328 #define SSL_R_INVALID_TICKET_KEYS_LENGTH 325 #define SSL_R_INVALID_TRUST 279 #define SSL_R_KEY_ARG_TOO_LONG 284 #define SSL_R_KRB5 285 #define SSL_R_KRB5_C_CC_PRINC 286 #define SSL_R_KRB5_C_GET_CRED 287 #define SSL_R_KRB5_C_INIT 288 #define SSL_R_KRB5_C_MK_REQ 289 #define SSL_R_KRB5_S_BAD_TICKET 290 #define SSL_R_KRB5_S_INIT 291 #define SSL_R_KRB5_S_RD_REQ 292 #define SSL_R_KRB5_S_TKT_EXPIRED 293 #define SSL_R_KRB5_S_TKT_NYV 294 #define SSL_R_KRB5_S_TKT_SKEW 295 #define SSL_R_LENGTH_MISMATCH 159 #define SSL_R_LENGTH_TOO_SHORT 160 #define SSL_R_LIBRARY_BUG 274 #define SSL_R_LIBRARY_HAS_NO_CIPHERS 161 #define SSL_R_MESSAGE_TOO_LONG 296 #define SSL_R_MISSING_DH_DSA_CERT 162 #define SSL_R_MISSING_DH_KEY 163 #define SSL_R_MISSING_DH_RSA_CERT 164 #define SSL_R_MISSING_DSA_SIGNING_CERT 165 #define SSL_R_MISSING_EXPORT_TMP_DH_KEY 166 #define SSL_R_MISSING_EXPORT_TMP_RSA_KEY 167 #define SSL_R_MISSING_RSA_CERTIFICATE 168 #define SSL_R_MISSING_RSA_ENCRYPTING_CERT 169 #define SSL_R_MISSING_RSA_SIGNING_CERT 170 #define SSL_R_MISSING_SRP_PARAM 358 #define SSL_R_MISSING_TMP_DH_KEY 171 #define SSL_R_MISSING_TMP_ECDH_KEY 311 #define SSL_R_MISSING_TMP_RSA_KEY 172 #define SSL_R_MISSING_TMP_RSA_PKEY 173 #define SSL_R_MISSING_VERIFY_MESSAGE 174 #define SSL_R_MULTIPLE_SGC_RESTARTS 346 #define SSL_R_NON_SSLV2_INITIAL_PACKET 175 #define SSL_R_NO_CERTIFICATES_RETURNED 176 #define SSL_R_NO_CERTIFICATE_ASSIGNED 177 #define SSL_R_NO_CERTIFICATE_RETURNED 178 #define SSL_R_NO_CERTIFICATE_SET 179 #define SSL_R_NO_CERTIFICATE_SPECIFIED 180 #define SSL_R_NO_CIPHERS_AVAILABLE 181 #define SSL_R_NO_CIPHERS_PASSED 182 #define SSL_R_NO_CIPHERS_SPECIFIED 183 #define SSL_R_NO_CIPHER_LIST 184 #define SSL_R_NO_CIPHER_MATCH 185 #define SSL_R_NO_CLIENT_CERT_METHOD 331 #define SSL_R_NO_CLIENT_CERT_RECEIVED 186 #define SSL_R_NO_COMPRESSION_SPECIFIED 187 #define SSL_R_NO_GOST_CERTIFICATE_SENT_BY_PEER 330 #define SSL_R_NO_METHOD_SPECIFIED 188 #define SSL_R_NO_PRIVATEKEY 189 #define SSL_R_NO_PRIVATE_KEY_ASSIGNED 190 #define SSL_R_NO_PROTOCOLS_AVAILABLE 191 #define SSL_R_NO_PUBLICKEY 192 #define SSL_R_NO_RENEGOTIATION 339 #define SSL_R_NO_REQUIRED_DIGEST 324 #define SSL_R_NO_SHARED_CIPHER 193 #define SSL_R_NO_SRTP_PROFILES 359 #define SSL_R_NO_VERIFY_CALLBACK 194 #define SSL_R_NULL_SSL_CTX 195 #define SSL_R_NULL_SSL_METHOD_PASSED 196 #define SSL_R_OLD_SESSION_CIPHER_NOT_RETURNED 197 #define SSL_R_OLD_SESSION_COMPRESSION_ALGORITHM_NOT_RETURNED 344 #define SSL_R_ONLY_TLS_ALLOWED_IN_FIPS_MODE 297 #define SSL_R_OPAQUE_PRF_INPUT_TOO_LONG 327 #define SSL_R_PACKET_LENGTH_TOO_LONG 198 #define SSL_R_PARSE_TLSEXT 227 #define SSL_R_PATH_TOO_LONG 270 #define SSL_R_PEER_DID_NOT_RETURN_A_CERTIFICATE 199 #define SSL_R_PEER_ERROR 200 #define SSL_R_PEER_ERROR_CERTIFICATE 201 #define SSL_R_PEER_ERROR_NO_CERTIFICATE 202 #define SSL_R_PEER_ERROR_NO_CIPHER 203 #define SSL_R_PEER_ERROR_UNSUPPORTED_CERTIFICATE_TYPE 204 #define SSL_R_PRE_MAC_LENGTH_TOO_LONG 205 #define SSL_R_PROBLEMS_MAPPING_CIPHER_FUNCTIONS 206 #define SSL_R_PROTOCOL_IS_SHUTDOWN 207 #define SSL_R_PSK_IDENTITY_NOT_FOUND 223 #define SSL_R_PSK_NO_CLIENT_CB 224 #define SSL_R_PSK_NO_SERVER_CB 225 #define SSL_R_PUBLIC_KEY_ENCRYPT_ERROR 208 #define SSL_R_PUBLIC_KEY_IS_NOT_RSA 209 #define SSL_R_PUBLIC_KEY_NOT_RSA 210 #define SSL_R_READ_BIO_NOT_SET 211 #define SSL_R_READ_TIMEOUT_EXPIRED 312 #define SSL_R_READ_WRONG_PACKET_TYPE 212 #define SSL_R_RECORD_LENGTH_MISMATCH 213 #define SSL_R_RECORD_TOO_LARGE 214 #define SSL_R_RECORD_TOO_SMALL 298 #define SSL_R_RENEGOTIATE_EXT_TOO_LONG 335 #define SSL_R_RENEGOTIATION_ENCODING_ERR 336 #define SSL_R_RENEGOTIATION_MISMATCH 337 #define SSL_R_REQUIRED_CIPHER_MISSING 215 #define SSL_R_REQUIRED_COMPRESSSION_ALGORITHM_MISSING 342 #define SSL_R_REUSE_CERT_LENGTH_NOT_ZERO 216 #define SSL_R_REUSE_CERT_TYPE_NOT_ZERO 217 #define SSL_R_REUSE_CIPHER_LIST_NOT_ZERO 218 #define SSL_R_SCSV_RECEIVED_WHEN_RENEGOTIATING 345 #define SSL_R_SERVERHELLO_TLSEXT 275 #define SSL_R_SESSION_ID_CONTEXT_UNINITIALIZED 277 #define SSL_R_SHORT_READ 219 #define SSL_R_SIGNATURE_ALGORITHMS_ERROR 360 #define SSL_R_SIGNATURE_FOR_NON_SIGNING_CERTIFICATE 220 #define SSL_R_SRP_A_CALC 361 #define SSL_R_SRTP_COULD_NOT_ALLOCATE_PROFILES 362 #define SSL_R_SRTP_PROTECTION_PROFILE_LIST_TOO_LONG 363 #define SSL_R_SRTP_UNKNOWN_PROTECTION_PROFILE 364 #define SSL_R_SSL23_DOING_SESSION_ID_REUSE 221 #define SSL_R_SSL2_CONNECTION_ID_TOO_LONG 299 #define SSL_R_SSL3_EXT_INVALID_ECPOINTFORMAT 321 #define SSL_R_SSL3_EXT_INVALID_SERVERNAME 319 #define SSL_R_SSL3_EXT_INVALID_SERVERNAME_TYPE 320 #define SSL_R_SSL3_SESSION_ID_TOO_LONG 300 #define SSL_R_SSL3_SESSION_ID_TOO_SHORT 222 #define SSL_R_SSLV3_ALERT_BAD_CERTIFICATE 1042 #define SSL_R_SSLV3_ALERT_BAD_RECORD_MAC 1020 #define SSL_R_SSLV3_ALERT_CERTIFICATE_EXPIRED 1045 #define SSL_R_SSLV3_ALERT_CERTIFICATE_REVOKED 1044 #define SSL_R_SSLV3_ALERT_CERTIFICATE_UNKNOWN 1046 #define SSL_R_SSLV3_ALERT_DECOMPRESSION_FAILURE 1030 #define SSL_R_SSLV3_ALERT_HANDSHAKE_FAILURE 1040 #define SSL_R_SSLV3_ALERT_ILLEGAL_PARAMETER 1047 #define SSL_R_SSLV3_ALERT_NO_CERTIFICATE 1041 #define SSL_R_SSLV3_ALERT_UNEXPECTED_MESSAGE 1010 #define SSL_R_SSLV3_ALERT_UNSUPPORTED_CERTIFICATE 1043 #define SSL_R_SSL_CTX_HAS_NO_DEFAULT_SSL_VERSION 228 #define SSL_R_SSL_HANDSHAKE_FAILURE 229 #define SSL_R_SSL_LIBRARY_HAS_NO_CIPHERS 230 #define SSL_R_SSL_SESSION_ID_CALLBACK_FAILED 301 #define SSL_R_SSL_SESSION_ID_CONFLICT 302 #define SSL_R_SSL_SESSION_ID_CONTEXT_TOO_LONG 273 #define SSL_R_SSL_SESSION_ID_HAS_BAD_LENGTH 303 #define SSL_R_SSL_SESSION_ID_IS_DIFFERENT 231 #define SSL_R_TLSV1_ALERT_ACCESS_DENIED 1049 #define SSL_R_TLSV1_ALERT_DECODE_ERROR 1050 #define SSL_R_TLSV1_ALERT_DECRYPTION_FAILED 1021 #define SSL_R_TLSV1_ALERT_DECRYPT_ERROR 1051 #define SSL_R_TLSV1_ALERT_EXPORT_RESTRICTION 1060 #define SSL_R_TLSV1_ALERT_INAPPROPRIATE_FALLBACK 1086 #define SSL_R_TLSV1_ALERT_INSUFFICIENT_SECURITY 1071 #define SSL_R_TLSV1_ALERT_INTERNAL_ERROR 1080 #define SSL_R_TLSV1_ALERT_NO_RENEGOTIATION 1100 #define SSL_R_TLSV1_ALERT_PROTOCOL_VERSION 1070 #define SSL_R_TLSV1_ALERT_RECORD_OVERFLOW 1022 #define SSL_R_TLSV1_ALERT_UNKNOWN_CA 1048 #define SSL_R_TLSV1_ALERT_USER_CANCELLED 1090 #define SSL_R_TLSV1_BAD_CERTIFICATE_HASH_VALUE 1114 #define SSL_R_TLSV1_BAD_CERTIFICATE_STATUS_RESPONSE 1113 #define SSL_R_TLSV1_CERTIFICATE_UNOBTAINABLE 1111 #define SSL_R_TLSV1_UNRECOGNIZED_NAME 1112 #define SSL_R_TLSV1_UNSUPPORTED_EXTENSION 1110 #define SSL_R_TLS_CLIENT_CERT_REQ_WITH_ANON_CIPHER 232 #define SSL_R_TLS_HEARTBEAT_PEER_DOESNT_ACCEPT 365 #define SSL_R_TLS_HEARTBEAT_PENDING 366 #define SSL_R_TLS_ILLEGAL_EXPORTER_LABEL 367 #define SSL_R_TLS_INVALID_ECPOINTFORMAT_LIST 157 #define SSL_R_TLS_PEER_DID_NOT_RESPOND_WITH_CERTIFICATE_LIST 233 #define SSL_R_TLS_RSA_ENCRYPTED_VALUE_LENGTH_IS_WRONG 234 #define SSL_R_TRIED_TO_USE_UNSUPPORTED_CIPHER 235 #define SSL_R_UNABLE_TO_DECODE_DH_CERTS 236 #define SSL_R_UNABLE_TO_DECODE_ECDH_CERTS 313 #define SSL_R_UNABLE_TO_EXTRACT_PUBLIC_KEY 237 #define SSL_R_UNABLE_TO_FIND_DH_PARAMETERS 238 #define SSL_R_UNABLE_TO_FIND_ECDH_PARAMETERS 314 #define SSL_R_UNABLE_TO_FIND_PUBLIC_KEY_PARAMETERS 239 #define SSL_R_UNABLE_TO_FIND_SSL_METHOD 240 #define SSL_R_UNABLE_TO_LOAD_SSL2_MD5_ROUTINES 241 #define SSL_R_UNABLE_TO_LOAD_SSL3_MD5_ROUTINES 242 #define SSL_R_UNABLE_TO_LOAD_SSL3_SHA1_ROUTINES 243 #define SSL_R_UNEXPECTED_MESSAGE 244 #define SSL_R_UNEXPECTED_RECORD 245 #define SSL_R_UNINITIALIZED 276 #define SSL_R_UNKNOWN_ALERT_TYPE 246 #define SSL_R_UNKNOWN_CERTIFICATE_TYPE 247 #define SSL_R_UNKNOWN_CIPHER_RETURNED 248 #define SSL_R_UNKNOWN_CIPHER_TYPE 249 #define SSL_R_UNKNOWN_DIGEST 368 #define SSL_R_UNKNOWN_KEY_EXCHANGE_TYPE 250 #define SSL_R_UNKNOWN_PKEY_TYPE 251 #define SSL_R_UNKNOWN_PROTOCOL 252 #define SSL_R_UNKNOWN_REMOTE_ERROR_TYPE 253 #define SSL_R_UNKNOWN_SSL_VERSION 254 #define SSL_R_UNKNOWN_STATE 255 #define SSL_R_UNSAFE_LEGACY_RENEGOTIATION_DISABLED 338 #define SSL_R_UNSUPPORTED_CIPHER 256 #define SSL_R_UNSUPPORTED_COMPRESSION_ALGORITHM 257 #define SSL_R_UNSUPPORTED_DIGEST_TYPE 326 #define SSL_R_UNSUPPORTED_ELLIPTIC_CURVE 315 #define SSL_R_UNSUPPORTED_PROTOCOL 258 #define SSL_R_UNSUPPORTED_SSL_VERSION 259 #define SSL_R_UNSUPPORTED_STATUS_TYPE 329 #define SSL_R_USE_SRTP_NOT_NEGOTIATED 369 #define SSL_R_WRITE_BIO_NOT_SET 260 #define SSL_R_WRONG_CIPHER_RETURNED 261 #define SSL_R_WRONG_MESSAGE_TYPE 262 #define SSL_R_WRONG_NUMBER_OF_KEY_BITS 263 #define SSL_R_WRONG_SIGNATURE_LENGTH 264 #define SSL_R_WRONG_SIGNATURE_SIZE 265 #define SSL_R_WRONG_SIGNATURE_TYPE 370 #define SSL_R_WRONG_SSL_VERSION 266 #define SSL_R_WRONG_VERSION_NUMBER 267 #define SSL_R_X509_LIB 268 #define SSL_R_X509_VERIFICATION_SETUP_PROBLEMS 269 # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['openssl/ssl.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.ssl(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:751) TESTING: checkSharedLibrary from config.packages.ssl(config/BuildSystem/config/package.py:751) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.X(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:692) TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:692) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_XSetWMName': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `XSetWMName' collect2: ld returned 1 exit status Popping language C Checking for library in Compiler specific search X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lX11 -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBX11" to "1" Popping language C Checking for headers Compiler specific search X: ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/tisaac/Projects/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.headers -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include /tmp/petsc-W4It8W/config.headers/conftest.c stdout: # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/home/tisaac/Projects/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 6 #define __GNUC_PATCHLEVEL__ 4 #define __VERSION__ "4.6.4" #define __pic__ 2 #define __PIC__ 2 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 2147483647 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define _FORTIFY_SOURCE 2 #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __k8 1 #define __k8__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __gnu_linux__ 1 #define __linux 1 #define __linux__ 1 #define linux 1 #define __unix 1 #define __unix__ 1 #define unix 1 #define __ELF__ 1 #define __DECIMAL_BID_FORMAT__ 1 # 1 "" # 1 "/tmp/petsc-W4It8W/config.headers/conftest.c" # 1 "/tmp/petsc-W4It8W/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBZ 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBX11 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBCRYPTO 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LIBSAWS 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_LIBSSL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_ARCH "arch-linux2-c-debug-mpich" #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30103300 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_FORTRAN_INTERFACES 1 #define PETSC_MEMALIGN 16 #define PETSC__GNU_SOURCE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 8 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 # 2 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/tmp/petsc-W4It8W/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 # 1 "/usr/include/X11/Xlib.h" 1 3 4 # 34 "/usr/include/X11/Xlib.h" 3 4 #define _X11_XLIB_H_ #define XlibSpecificationRelease 6 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define _SYS_TYPES_H 1 # 1 "/usr/include/features.h" 1 3 4 # 21 "/usr/include/features.h" 3 4 #define _FEATURES_H 1 # 98 "/usr/include/features.h" 3 4 #undef __USE_ISOC99 #undef __USE_ISOC95 #undef __USE_POSIX #undef __USE_POSIX2 #undef __USE_POSIX199309 #undef __USE_POSIX199506 #undef __USE_XOPEN #undef __USE_XOPEN_EXTENDED #undef __USE_UNIX98 #undef __USE_XOPEN2K #undef __USE_XOPEN2KXSI #undef __USE_XOPEN2K8 #undef __USE_XOPEN2K8XSI #undef __USE_LARGEFILE #undef __USE_LARGEFILE64 #undef __USE_FILE_OFFSET64 #undef __USE_BSD #undef __USE_SVID #undef __USE_MISC #undef __USE_ATFILE #undef __USE_GNU #undef __USE_REENTRANT #undef __USE_FORTIFY_LEVEL #undef __FAVOR_BSD #undef __KERNEL_STRICT_NAMES #define __KERNEL_STRICT_NAMES #define __USE_ANSI 1 # 141 "/usr/include/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) # 184 "/usr/include/features.h" 3 4 #define _BSD_SOURCE 1 #define _SVID_SOURCE 1 # 207 "/usr/include/features.h" 3 4 #define _POSIX_SOURCE 1 #define _POSIX_C_SOURCE 200809L #define __USE_POSIX_IMPLICITLY 1 #define __USE_POSIX 1 #define __USE_POSIX2 1 #define __USE_POSIX199309 1 #define __USE_POSIX199506 1 #define __USE_XOPEN2K 1 #undef __USE_ISOC95 #define __USE_ISOC95 1 #undef __USE_ISOC99 #define __USE_ISOC99 1 #define __USE_XOPEN2K8 1 #undef _ATFILE_SOURCE #define _ATFILE_SOURCE 1 # 289 "/usr/include/features.h" 3 4 #define __USE_MISC 1 #define __USE_BSD 1 #define __USE_SVID 1 #define __USE_ATFILE 1 # 320 "/usr/include/features.h" 3 4 #define __USE_FORTIFY_LEVEL 0 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 3 4 #define _PREDEFS_H #define __STDC_IEC_559__ 1 #define __STDC_IEC_559_COMPLEX__ 1 # 325 "/usr/include/features.h" 2 3 4 #define __STDC_ISO_10646__ 200009L #undef __GNU_LIBRARY__ #define __GNU_LIBRARY__ 6 #define __GLIBC__ 2 #define __GLIBC_MINOR__ 15 #define __GLIBC_PREREQ(maj,min) ((__GLIBC__ << 16) + __GLIBC_MINOR__ >= ((maj) << 16) + (min)) #define __GLIBC_HAVE_LONG_LONG 1 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define _SYS_CDEFS_H 1 # 36 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #undef __P #undef __PMT #define __LEAF , __leaf__ #define __LEAF_ATTR __attribute__ ((__leaf__)) # 57 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __THROW __attribute__ ((__nothrow__ __LEAF)) #define __THROWNL __attribute__ ((__nothrow__)) #define __NTH(fct) __attribute__ ((__nothrow__ __LEAF)) fct # 88 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __P(args) args #define __PMT(args) args #define __CONCAT(x,y) x ## y #define __STRING(x) #x #define __ptr_t void * #define __long_double_t long double #define __BEGIN_DECLS #define __END_DECLS # 128 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __BEGIN_NAMESPACE_STD #define __END_NAMESPACE_STD #define __USING_NAMESPACE_STD(name) #define __BEGIN_NAMESPACE_C99 #define __END_NAMESPACE_C99 #define __USING_NAMESPACE_C99(name) #define __bounded #define __unbounded #define __ptrvalue #define __bos(ptr) __builtin_object_size (ptr, __USE_FORTIFY_LEVEL > 1) #define __bos0(ptr) __builtin_object_size (ptr, 0) #define __warndecl(name,msg) extern void name (void) __attribute__((__warning__ (msg))) #define __warnattr(msg) __attribute__((__warning__ (msg))) #define __errordecl(name,msg) extern void name (void) __attribute__((__error__ (msg))) # 164 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __flexarr [] # 191 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __REDIRECT(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) #define __REDIRECT_NTH(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROW #define __REDIRECT_NTHNL(name,proto,alias) name proto __asm__ (__ASMNAME (#alias)) __THROWNL #define __ASMNAME(cname) __ASMNAME2 (__USER_LABEL_PREFIX__, cname) #define __ASMNAME2(prefix,cname) __STRING (prefix) cname # 225 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_malloc__ __attribute__ ((__malloc__)) # 234 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_pure__ __attribute__ ((__pure__)) #define __attribute_const__ __attribute__ ((__const__)) # 250 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_used__ __attribute__ ((__used__)) #define __attribute_noinline__ __attribute__ ((__noinline__)) #define __attribute_deprecated__ __attribute__ ((__deprecated__)) # 271 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_arg__(x) __attribute__ ((__format_arg__ (x))) # 281 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __attribute_format_strfmon__(a,b) __attribute__ ((__format__ (__strfmon__, a, b))) # 290 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __nonnull(params) __attribute__ ((__nonnull__ params)) #define __attribute_warn_unused_result__ __attribute__ ((__warn_unused_result__)) # 307 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __wur #define __always_inline __inline __attribute__ ((__always_inline__)) # 330 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __extern_inline extern __inline #define __extern_always_inline extern __always_inline __attribute__ ((__artificial__)) # 343 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __va_arg_pack() __builtin_va_arg_pack () #define __va_arg_pack_len() __builtin_va_arg_pack_len () # 364 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __restrict_arr __restrict # 378 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 379 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 400 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 #define __LDBL_REDIR1(name,proto,alias) name proto #define __LDBL_REDIR(name,proto) name proto #define __LDBL_REDIR1_NTH(name,proto,alias) name proto __THROW #define __LDBL_REDIR_NTH(name,proto) name proto __THROW #define __LDBL_REDIR_DECL(name) #define __REDIRECT_LDBL(name,proto,alias) __REDIRECT (name, proto, alias) #define __REDIRECT_NTH_LDBL(name,proto,alias) __REDIRECT_NTH (name, proto, alias) # 358 "/usr/include/features.h" 2 3 4 # 389 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 5 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 3 4 #define __stub_bdflush #define __stub_chflags #define __stub_fattach #define __stub_fchflags #define __stub_fdetach #define __stub_getmsg #define __stub_gtty #define __stub_lchmod #define __stub_putmsg #define __stub_revoke #define __stub_setlogin #define __stub_sigreturn #define __stub_sstk #define __stub_stty # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 390 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define _BITS_TYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 29 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 99 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define __S16_TYPE short int #define __U16_TYPE unsigned short int #define __S32_TYPE int #define __U32_TYPE unsigned int #define __SLONGWORD_TYPE long int #define __ULONGWORD_TYPE unsigned long int # 118 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 #define __SQUAD_TYPE long int #define __UQUAD_TYPE unsigned long int #define __SWORD_TYPE long int #define __UWORD_TYPE unsigned long int #define __SLONG32_TYPE int #define __ULONG32_TYPE unsigned int #define __S64_TYPE long int #define __U64_TYPE unsigned long int #define __STD_TYPE typedef # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 3 4 #define _BITS_TYPESIZES_H 1 #define __DEV_T_TYPE __UQUAD_TYPE #define __UID_T_TYPE __U32_TYPE #define __GID_T_TYPE __U32_TYPE #define __INO_T_TYPE __ULONGWORD_TYPE #define __INO64_T_TYPE __UQUAD_TYPE #define __MODE_T_TYPE __U32_TYPE #define __NLINK_T_TYPE __UWORD_TYPE #define __OFF_T_TYPE __SLONGWORD_TYPE #define __OFF64_T_TYPE __SQUAD_TYPE #define __PID_T_TYPE __S32_TYPE #define __RLIM_T_TYPE __ULONGWORD_TYPE #define __RLIM64_T_TYPE __UQUAD_TYPE #define __BLKCNT_T_TYPE __SLONGWORD_TYPE #define __BLKCNT64_T_TYPE __SQUAD_TYPE #define __FSBLKCNT_T_TYPE __ULONGWORD_TYPE #define __FSBLKCNT64_T_TYPE __UQUAD_TYPE #define __FSFILCNT_T_TYPE __ULONGWORD_TYPE #define __FSFILCNT64_T_TYPE __UQUAD_TYPE #define __ID_T_TYPE __U32_TYPE #define __CLOCK_T_TYPE __SLONGWORD_TYPE #define __TIME_T_TYPE __SLONGWORD_TYPE #define __USECONDS_T_TYPE __U32_TYPE #define __SUSECONDS_T_TYPE __SLONGWORD_TYPE #define __DADDR_T_TYPE __S32_TYPE #define __SWBLK_T_TYPE __SLONGWORD_TYPE #define __KEY_T_TYPE __S32_TYPE #define __CLOCKID_T_TYPE __S32_TYPE #define __TIMER_T_TYPE void * #define __BLKSIZE_T_TYPE __SLONGWORD_TYPE #define __FSID_T_TYPE struct { int __val[2]; } #define __SSIZE_T_TYPE __SWORD_TYPE #define __FD_SETSIZE 1024 # 132 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; #undef __STD_TYPE # 31 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; #define __u_char_defined typedef __loff_t loff_t; typedef __ino_t ino_t; #define __ino_t_defined typedef __dev_t dev_t; #define __dev_t_defined typedef __gid_t gid_t; #define __gid_t_defined typedef __mode_t mode_t; #define __mode_t_defined typedef __nlink_t nlink_t; #define __nlink_t_defined typedef __uid_t uid_t; #define __uid_t_defined typedef __off_t off_t; #define __off_t_defined typedef __pid_t pid_t; #define __pid_t_defined typedef __id_t id_t; #define __id_t_defined typedef __ssize_t ssize_t; #define __ssize_t_defined typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; #define __daddr_t_defined typedef __key_t key_t; #define __key_t_defined #define __need_clock_t #define __need_time_t #define __need_timer_t #define __need_clockid_t # 1 "/usr/include/time.h" 1 3 4 # 54 "/usr/include/time.h" 3 4 #define __clock_t_defined 1 typedef __clock_t clock_t; #undef __need_clock_t #define __time_t_defined 1 typedef __time_t time_t; #undef __need_time_t #define __clockid_t_defined 1 typedef __clockid_t clockid_t; #undef __clockid_time_t #define __timer_t_defined 1 typedef __timer_t timer_t; #undef __need_timer_t # 127 "/usr/include/time.h" 3 4 #undef __need_timespec # 134 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define __need_size_t # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 187 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 408 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_NULL # 148 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 188 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 #define __intN_t(N,MODE) typedef int int ##N ##_t __attribute__ ((__mode__ (MODE))) #define __u_intN_t(N,MODE) typedef unsigned int u_int ##N ##_t __attribute__ ((__mode__ (MODE))) #define __int8_t_defined typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); #define __BIT_TYPES_DEFINED__ 1 # 1 "/usr/include/endian.h" 1 3 4 # 20 "/usr/include/endian.h" 3 4 #define _ENDIAN_H 1 # 32 "/usr/include/endian.h" 3 4 #define __LITTLE_ENDIAN 1234 #define __BIG_ENDIAN 4321 #define __PDP_ENDIAN 3412 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 #define __BYTE_ORDER __LITTLE_ENDIAN # 38 "/usr/include/endian.h" 2 3 4 #define __FLOAT_WORD_ORDER __BYTE_ORDER #define LITTLE_ENDIAN __LITTLE_ENDIAN #define BIG_ENDIAN __BIG_ENDIAN #define PDP_ENDIAN __PDP_ENDIAN #define BYTE_ORDER __BYTE_ORDER #define __LONG_LONG_PAIR(HI,LO) LO, HI # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define _BITS_BYTESWAP_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 #define __bswap_constant_16(x) ((unsigned short int) ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8))) #define __bswap_16(x) (__extension__ ({ register unsigned short int __v, __x = (unsigned short int) (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_16 (__x); else __asm__ ("rorw $8, %w0" : "=r" (__v) : "0" (__x) : "cc"); __v; })) # 56 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_constant_32(x) ((((x) & 0xff000000) >> 24) | (((x) & 0x00ff0000) >> 8) | (((x) & 0x0000ff00) << 8) | (((x) & 0x000000ff) << 24)) # 69 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_32(x) (__extension__ ({ register unsigned int __v, __x = (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_32 (__x); else __asm__ ("bswap %0" : "=r" (__v) : "0" (__x)); __v; })) # 101 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_constant_64(x) (__extension__ ((((x) & 0xff00000000000000ull) >> 56) | (((x) & 0x00ff000000000000ull) >> 40) | (((x) & 0x0000ff0000000000ull) >> 24) | (((x) & 0x000000ff00000000ull) >> 8) | (((x) & 0x00000000ff000000ull) << 8) | (((x) & 0x0000000000ff0000ull) << 24) | (((x) & 0x000000000000ff00ull) << 40) | (((x) & 0x00000000000000ffull) << 56))) # 112 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 #define __bswap_64(x) (__extension__ ({ register unsigned long __v, __x = (x); if (__builtin_constant_p (__x)) __v = __bswap_constant_64 (__x); else __asm__ ("bswap %q0" : "=r" (__v) : "0" (__x)); __v; })) # 62 "/usr/include/endian.h" 2 3 4 #define htobe16(x) __bswap_16 (x) #define htole16(x) (x) #define be16toh(x) __bswap_16 (x) #define le16toh(x) (x) #define htobe32(x) __bswap_32 (x) #define htole32(x) (x) #define be32toh(x) __bswap_32 (x) #define le32toh(x) (x) #define htobe64(x) __bswap_64 (x) #define htole64(x) (x) #define be64toh(x) __bswap_64 (x) #define le64toh(x) (x) # 218 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 #define _SYS_SELECT_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 24 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 #define __FD_ZERO_STOS "stosq" #define __FD_ZERO(fdsp) do { int __d0, __d1; __asm__ __volatile__ ("cld; rep; " __FD_ZERO_STOS : "=c" (__d0), "=D" (__d1) : "a" (0), "0" (sizeof (fd_set) / sizeof (__fd_mask)), "1" (&__FDS_BITS (fdsp)[0]) : "memory"); } while (0) # 59 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 #define __FD_SET(d,set) ((void) (__FDS_BITS (set)[__FD_ELT (d)] |= __FD_MASK (d))) #define __FD_CLR(d,set) ((void) (__FDS_BITS (set)[__FD_ELT (d)] &= ~__FD_MASK (d))) #define __FD_ISSET(d,set) ((__FDS_BITS (set)[__FD_ELT (d)] & __FD_MASK (d)) != 0) # 32 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 #define _SIGSET_H_types 1 typedef int __sig_atomic_t; #define _SIGSET_NWORDS (1024 / (8 * sizeof (unsigned long int))) typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 #define __sigset_t_defined typedef __sigset_t sigset_t; #define __need_time_t #define __need_timespec # 1 "/usr/include/time.h" 1 3 4 # 67 "/usr/include/time.h" 3 4 #undef __need_clock_t # 83 "/usr/include/time.h" 3 4 #undef __need_time_t # 95 "/usr/include/time.h" 3 4 #undef __clockid_time_t # 107 "/usr/include/time.h" 3 4 #undef __need_timer_t #define __timespec_defined 1 struct timespec { __time_t tv_sec; long int tv_nsec; }; #undef __need_timespec # 45 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 #define __need_timeval # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #define _STRUCT_TIMEVAL 1 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 99 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 #undef __need_timeval # 47 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; #define __suseconds_t_defined typedef long int __fd_mask; #undef __NFDBITS #define __NFDBITS (8 * (int) sizeof (__fd_mask)) #define __FD_ELT(d) ((d) / __NFDBITS) #define __FD_MASK(d) ((__fd_mask) 1 << ((d) % __NFDBITS)) typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; #define __FDS_BITS(set) ((set)->__fds_bits) } fd_set; #define FD_SETSIZE __FD_SETSIZE typedef __fd_mask fd_mask; #define NFDBITS __NFDBITS #define FD_SET(fd,fdsetp) __FD_SET (fd, fdsetp) #define FD_CLR(fd,fdsetp) __FD_CLR (fd, fdsetp) #define FD_ISSET(fd,fdsetp) __FD_ISSET (fd, fdsetp) #define FD_ZERO(fdsetp) __FD_ZERO (fdsetp) # 107 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 119 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 132 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 221 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 #define _SYS_SYSMACROS_H 1 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 64 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 #define major(dev) gnu_dev_major (dev) #define minor(dev) gnu_dev_minor (dev) #define makedev(maj,min) gnu_dev_makedev (maj, min) # 224 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; #define __blksize_t_defined typedef __blkcnt_t blkcnt_t; #define __blkcnt_t_defined typedef __fsblkcnt_t fsblkcnt_t; #define __fsblkcnt_t_defined typedef __fsfilcnt_t fsfilcnt_t; #define __fsfilcnt_t_defined # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 #define _BITS_PTHREADTYPES_H 1 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 24 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 #define __SIZEOF_PTHREAD_ATTR_T 56 #define __SIZEOF_PTHREAD_MUTEX_T 40 #define __SIZEOF_PTHREAD_MUTEXATTR_T 4 #define __SIZEOF_PTHREAD_COND_T 48 #define __SIZEOF_PTHREAD_CONDATTR_T 4 #define __SIZEOF_PTHREAD_RWLOCK_T 56 #define __SIZEOF_PTHREAD_RWLOCKATTR_T 8 #define __SIZEOF_PTHREAD_BARRIER_T 32 #define __SIZEOF_PTHREAD_BARRIERATTR_T 4 # 50 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; #define __PTHREAD_MUTEX_HAVE_PREV 1 # 101 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 39 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/X.h" 1 3 4 #define X_H # 53 "/usr/include/X11/X.h" 3 4 #define X_PROTOCOL 11 #define X_PROTOCOL_REVISION 0 # 65 "/usr/include/X11/X.h" 3 4 #define _XTYPEDEF_XID typedef unsigned long XID; #define _XTYPEDEF_MASK typedef unsigned long Mask; #define _XTYPEDEF_ATOM typedef unsigned long Atom; typedef unsigned long VisualID; typedef unsigned long Time; # 96 "/usr/include/X11/X.h" 3 4 typedef XID Window; typedef XID Drawable; #define _XTYPEDEF_FONT typedef XID Font; typedef XID Pixmap; typedef XID Cursor; typedef XID Colormap; typedef XID GContext; typedef XID KeySym; typedef unsigned char KeyCode; #define None 0L #define ParentRelative 1L #define CopyFromParent 0L #define PointerWindow 0L #define InputFocus 1L #define PointerRoot 1L #define AnyPropertyType 0L #define AnyKey 0L #define AnyButton 0L #define AllTemporary 0L #define CurrentTime 0L #define NoSymbol 0L # 150 "/usr/include/X11/X.h" 3 4 #define NoEventMask 0L #define KeyPressMask (1L<<0) #define KeyReleaseMask (1L<<1) #define ButtonPressMask (1L<<2) #define ButtonReleaseMask (1L<<3) #define EnterWindowMask (1L<<4) #define LeaveWindowMask (1L<<5) #define PointerMotionMask (1L<<6) #define PointerMotionHintMask (1L<<7) #define Button1MotionMask (1L<<8) #define Button2MotionMask (1L<<9) #define Button3MotionMask (1L<<10) #define Button4MotionMask (1L<<11) #define Button5MotionMask (1L<<12) #define ButtonMotionMask (1L<<13) #define KeymapStateMask (1L<<14) #define ExposureMask (1L<<15) #define VisibilityChangeMask (1L<<16) #define StructureNotifyMask (1L<<17) #define ResizeRedirectMask (1L<<18) #define SubstructureNotifyMask (1L<<19) #define SubstructureRedirectMask (1L<<20) #define FocusChangeMask (1L<<21) #define PropertyChangeMask (1L<<22) #define ColormapChangeMask (1L<<23) #define OwnerGrabButtonMask (1L<<24) #define KeyPress 2 #define KeyRelease 3 #define ButtonPress 4 #define ButtonRelease 5 #define MotionNotify 6 #define EnterNotify 7 #define LeaveNotify 8 #define FocusIn 9 #define FocusOut 10 #define KeymapNotify 11 #define Expose 12 #define GraphicsExpose 13 #define NoExpose 14 #define VisibilityNotify 15 #define CreateNotify 16 #define DestroyNotify 17 #define UnmapNotify 18 #define MapNotify 19 #define MapRequest 20 #define ReparentNotify 21 #define ConfigureNotify 22 #define ConfigureRequest 23 #define GravityNotify 24 #define ResizeRequest 25 #define CirculateNotify 26 #define CirculateRequest 27 #define PropertyNotify 28 #define SelectionClear 29 #define SelectionRequest 30 #define SelectionNotify 31 #define ColormapNotify 32 #define ClientMessage 33 #define MappingNotify 34 #define GenericEvent 35 #define LASTEvent 36 #define ShiftMask (1<<0) #define LockMask (1<<1) #define ControlMask (1<<2) #define Mod1Mask (1<<3) #define Mod2Mask (1<<4) #define Mod3Mask (1<<5) #define Mod4Mask (1<<6) #define Mod5Mask (1<<7) #define ShiftMapIndex 0 #define LockMapIndex 1 #define ControlMapIndex 2 #define Mod1MapIndex 3 #define Mod2MapIndex 4 #define Mod3MapIndex 5 #define Mod4MapIndex 6 #define Mod5MapIndex 7 #define Button1Mask (1<<8) #define Button2Mask (1<<9) #define Button3Mask (1<<10) #define Button4Mask (1<<11) #define Button5Mask (1<<12) #define AnyModifier (1<<15) #define Button1 1 #define Button2 2 #define Button3 3 #define Button4 4 #define Button5 5 #define NotifyNormal 0 #define NotifyGrab 1 #define NotifyUngrab 2 #define NotifyWhileGrabbed 3 #define NotifyHint 1 #define NotifyAncestor 0 #define NotifyVirtual 1 #define NotifyInferior 2 #define NotifyNonlinear 3 #define NotifyNonlinearVirtual 4 #define NotifyPointer 5 #define NotifyPointerRoot 6 #define NotifyDetailNone 7 #define VisibilityUnobscured 0 #define VisibilityPartiallyObscured 1 #define VisibilityFullyObscured 2 #define PlaceOnTop 0 #define PlaceOnBottom 1 #define FamilyInternet 0 #define FamilyDECnet 1 #define FamilyChaos 2 #define FamilyInternet6 6 #define FamilyServerInterpreted 5 #define PropertyNewValue 0 #define PropertyDelete 1 #define ColormapUninstalled 0 #define ColormapInstalled 1 #define GrabModeSync 0 #define GrabModeAsync 1 #define GrabSuccess 0 #define AlreadyGrabbed 1 #define GrabInvalidTime 2 #define GrabNotViewable 3 #define GrabFrozen 4 #define AsyncPointer 0 #define SyncPointer 1 #define ReplayPointer 2 #define AsyncKeyboard 3 #define SyncKeyboard 4 #define ReplayKeyboard 5 #define AsyncBoth 6 #define SyncBoth 7 #define RevertToNone (int)None #define RevertToPointerRoot (int)PointerRoot #define RevertToParent 2 #define Success 0 #define BadRequest 1 #define BadValue 2 #define BadWindow 3 #define BadPixmap 4 #define BadAtom 5 #define BadCursor 6 #define BadFont 7 #define BadMatch 8 #define BadDrawable 9 #define BadAccess 10 # 369 "/usr/include/X11/X.h" 3 4 #define BadAlloc 11 #define BadColor 12 #define BadGC 13 #define BadIDChoice 14 #define BadName 15 #define BadLength 16 #define BadImplementation 17 #define FirstExtensionError 128 #define LastExtensionError 255 # 387 "/usr/include/X11/X.h" 3 4 #define InputOutput 1 #define InputOnly 2 #define CWBackPixmap (1L<<0) #define CWBackPixel (1L<<1) #define CWBorderPixmap (1L<<2) #define CWBorderPixel (1L<<3) #define CWBitGravity (1L<<4) #define CWWinGravity (1L<<5) #define CWBackingStore (1L<<6) #define CWBackingPlanes (1L<<7) #define CWBackingPixel (1L<<8) #define CWOverrideRedirect (1L<<9) #define CWSaveUnder (1L<<10) #define CWEventMask (1L<<11) #define CWDontPropagate (1L<<12) #define CWColormap (1L<<13) #define CWCursor (1L<<14) #define CWX (1<<0) #define CWY (1<<1) #define CWWidth (1<<2) #define CWHeight (1<<3) #define CWBorderWidth (1<<4) #define CWSibling (1<<5) #define CWStackMode (1<<6) #define ForgetGravity 0 #define NorthWestGravity 1 #define NorthGravity 2 #define NorthEastGravity 3 #define WestGravity 4 #define CenterGravity 5 #define EastGravity 6 #define SouthWestGravity 7 #define SouthGravity 8 #define SouthEastGravity 9 #define StaticGravity 10 #define UnmapGravity 0 #define NotUseful 0 #define WhenMapped 1 #define Always 2 #define IsUnmapped 0 #define IsUnviewable 1 #define IsViewable 2 #define SetModeInsert 0 #define SetModeDelete 1 #define DestroyAll 0 #define RetainPermanent 1 #define RetainTemporary 2 #define Above 0 #define Below 1 #define TopIf 2 #define BottomIf 3 #define Opposite 4 #define RaiseLowest 0 #define LowerHighest 1 #define PropModeReplace 0 #define PropModePrepend 1 #define PropModeAppend 2 #define GXclear 0x0 #define GXand 0x1 #define GXandReverse 0x2 #define GXcopy 0x3 #define GXandInverted 0x4 #define GXnoop 0x5 #define GXxor 0x6 #define GXor 0x7 #define GXnor 0x8 #define GXequiv 0x9 #define GXinvert 0xa #define GXorReverse 0xb #define GXcopyInverted 0xc #define GXorInverted 0xd #define GXnand 0xe #define GXset 0xf #define LineSolid 0 #define LineOnOffDash 1 #define LineDoubleDash 2 #define CapNotLast 0 #define CapButt 1 #define CapRound 2 #define CapProjecting 3 #define JoinMiter 0 #define JoinRound 1 #define JoinBevel 2 #define FillSolid 0 #define FillTiled 1 #define FillStippled 2 #define FillOpaqueStippled 3 #define EvenOddRule 0 #define WindingRule 1 #define ClipByChildren 0 #define IncludeInferiors 1 #define Unsorted 0 #define YSorted 1 #define YXSorted 2 #define YXBanded 3 #define CoordModeOrigin 0 #define CoordModePrevious 1 #define Complex 0 #define Nonconvex 1 #define Convex 2 #define ArcChord 0 #define ArcPieSlice 1 #define GCFunction (1L<<0) #define GCPlaneMask (1L<<1) #define GCForeground (1L<<2) #define GCBackground (1L<<3) #define GCLineWidth (1L<<4) #define GCLineStyle (1L<<5) #define GCCapStyle (1L<<6) #define GCJoinStyle (1L<<7) #define GCFillStyle (1L<<8) #define GCFillRule (1L<<9) #define GCTile (1L<<10) #define GCStipple (1L<<11) #define GCTileStipXOrigin (1L<<12) #define GCTileStipYOrigin (1L<<13) #define GCFont (1L<<14) #define GCSubwindowMode (1L<<15) #define GCGraphicsExposures (1L<<16) #define GCClipXOrigin (1L<<17) #define GCClipYOrigin (1L<<18) #define GCClipMask (1L<<19) #define GCDashOffset (1L<<20) #define GCDashList (1L<<21) #define GCArcMode (1L<<22) #define GCLastBit 22 #define FontLeftToRight 0 #define FontRightToLeft 1 #define FontChange 255 #define XYBitmap 0 #define XYPixmap 1 #define ZPixmap 2 #define AllocNone 0 #define AllocAll 1 #define DoRed (1<<0) #define DoGreen (1<<1) #define DoBlue (1<<2) #define CursorShape 0 #define TileShape 1 #define StippleShape 2 #define AutoRepeatModeOff 0 #define AutoRepeatModeOn 1 #define AutoRepeatModeDefault 2 #define LedModeOff 0 #define LedModeOn 1 #define KBKeyClickPercent (1L<<0) #define KBBellPercent (1L<<1) #define KBBellPitch (1L<<2) #define KBBellDuration (1L<<3) #define KBLed (1L<<4) #define KBLedMode (1L<<5) #define KBKey (1L<<6) #define KBAutoRepeatMode (1L<<7) #define MappingSuccess 0 #define MappingBusy 1 #define MappingFailed 2 #define MappingModifier 0 #define MappingKeyboard 1 #define MappingPointer 2 #define DontPreferBlanking 0 #define PreferBlanking 1 #define DefaultBlanking 2 #define DisableScreenSaver 0 #define DisableScreenInterval 0 #define DontAllowExposures 0 #define AllowExposures 1 #define DefaultExposures 2 #define ScreenSaverReset 0 #define ScreenSaverActive 1 #define HostInsert 0 #define HostDelete 1 #define EnableAccess 1 #define DisableAccess 0 #define StaticGray 0 #define GrayScale 1 #define StaticColor 2 #define PseudoColor 3 #define TrueColor 4 #define DirectColor 5 #define LSBFirst 0 #define MSBFirst 1 # 45 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/Xfuncproto.h" 1 3 4 # 31 "/usr/include/X11/Xfuncproto.h" 3 4 #define _XFUNCPROTO_H_ #define NeedFunctionPrototypes 1 #define NeedVarargsPrototypes 1 #define NeedNestedPrototypes 1 #define _Xconst const #define NARROWPROTO #define FUNCPROTO 15 #define NeedWidePrototypes 0 # 74 "/usr/include/X11/Xfuncproto.h" 3 4 #define _XFUNCPROTOBEGIN #define _XFUNCPROTOEND #define _X_SENTINEL(x) __attribute__ ((__sentinel__(x))) #define _X_EXPORT __attribute__((visibility("default"))) #define _X_HIDDEN __attribute__((visibility("hidden"))) #define _X_INTERNAL __attribute__((visibility("internal"))) # 103 "/usr/include/X11/Xfuncproto.h" 3 4 #define _X_LIKELY(x) __builtin_expect(!!(x), 1) #define _X_UNLIKELY(x) __builtin_expect(!!(x), 0) #define _X_DEPRECATED __attribute__((deprecated)) #define _X_NORETURN __attribute((noreturn)) #define _X_ATTRIBUTE_PRINTF(x,y) __attribute__((__format__(__printf__,x,y))) #define _X_NONNULL(args...) __attribute__((nonnull(args))) #define _X_UNUSED __attribute__((__unused__)) # 154 "/usr/include/X11/Xfuncproto.h" 3 4 #define _X_INLINE __inline__ # 166 "/usr/include/X11/Xfuncproto.h" 3 4 #define _X_RESTRICT_KYWD __restrict__ # 48 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/include/X11/Xosdefs.h" 1 3 4 # 28 "/usr/include/X11/Xosdefs.h" 3 4 #define _XOSDEFS_H_ # 49 "/usr/include/X11/Xlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define _STDDEF_H #define _STDDEF_H_ #define _ANSI_STDDEF_H #define __STDDEF_H__ # 139 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define _PTRDIFF_T #define _T_PTRDIFF_ #define _T_PTRDIFF #define __PTRDIFF_T #define _PTRDIFF_T_ #define _BSD_PTRDIFF_T_ #define ___int_ptrdiff_t_h #define _GCC_PTRDIFF_T typedef long int ptrdiff_t; # 161 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_ptrdiff_t # 234 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_size_t # 263 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #define __wchar_t__ #define __WCHAR_T__ #define _WCHAR_T #define _T_WCHAR_ #define _T_WCHAR #define __WCHAR_T #define _WCHAR_T_ #define _BSD_WCHAR_T_ #define _WCHAR_T_DEFINED_ #define _WCHAR_T_DEFINED #define _WCHAR_T_H #define ___int_wchar_t_h #define __INT_WCHAR_T_H #define _GCC_WCHAR_T #define _WCHAR_T_DECLARED # 290 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef _BSD_WCHAR_T_ # 324 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 typedef int wchar_t; # 343 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-linux-gnu/4.6/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL #define offsetof(TYPE,MEMBER) __builtin_offsetof (TYPE, MEMBER) # 52 "/usr/include/X11/Xlib.h" 2 3 4 # 69 "/usr/include/X11/Xlib.h" 3 4 extern int _Xmblen( char *str, int len ); #define X_HAVE_UTF8_STRING 1 typedef char *XPointer; #define Bool int #define Status int #define True 1 #define False 0 #define QueuedAlready 0 #define QueuedAfterReading 1 #define QueuedAfterFlush 2 #define ConnectionNumber(dpy) (((_XPrivDisplay)dpy)->fd) #define RootWindow(dpy,scr) (ScreenOfDisplay(dpy,scr)->root) #define DefaultScreen(dpy) (((_XPrivDisplay)dpy)->default_screen) #define DefaultRootWindow(dpy) (ScreenOfDisplay(dpy,DefaultScreen(dpy))->root) #define DefaultVisual(dpy,scr) (ScreenOfDisplay(dpy,scr)->root_visual) #define DefaultGC(dpy,scr) (ScreenOfDisplay(dpy,scr)->default_gc) #define BlackPixel(dpy,scr) (ScreenOfDisplay(dpy,scr)->black_pixel) #define WhitePixel(dpy,scr) (ScreenOfDisplay(dpy,scr)->white_pixel) #define AllPlanes ((unsigned long)~0L) #define QLength(dpy) (((_XPrivDisplay)dpy)->qlen) #define DisplayWidth(dpy,scr) (ScreenOfDisplay(dpy,scr)->width) #define DisplayHeight(dpy,scr) (ScreenOfDisplay(dpy,scr)->height) #define DisplayWidthMM(dpy,scr) (ScreenOfDisplay(dpy,scr)->mwidth) #define DisplayHeightMM(dpy,scr) (ScreenOfDisplay(dpy,scr)->mheight) #define DisplayPlanes(dpy,scr) (ScreenOfDisplay(dpy,scr)->root_depth) #define DisplayCells(dpy,scr) (DefaultVisual(dpy,scr)->map_entries) #define ScreenCount(dpy) (((_XPrivDisplay)dpy)->nscreens) #define ServerVendor(dpy) (((_XPrivDisplay)dpy)->vendor) #define ProtocolVersion(dpy) (((_XPrivDisplay)dpy)->proto_major_version) #define ProtocolRevision(dpy) (((_XPrivDisplay)dpy)->proto_minor_version) #define VendorRelease(dpy) (((_XPrivDisplay)dpy)->release) #define DisplayString(dpy) (((_XPrivDisplay)dpy)->display_name) #define DefaultDepth(dpy,scr) (ScreenOfDisplay(dpy,scr)->root_depth) #define DefaultColormap(dpy,scr) (ScreenOfDisplay(dpy,scr)->cmap) #define BitmapUnit(dpy) (((_XPrivDisplay)dpy)->bitmap_unit) #define BitmapBitOrder(dpy) (((_XPrivDisplay)dpy)->bitmap_bit_order) #define BitmapPad(dpy) (((_XPrivDisplay)dpy)->bitmap_pad) #define ImageByteOrder(dpy) (((_XPrivDisplay)dpy)->byte_order) #define NextRequest(dpy) (((_XPrivDisplay)dpy)->request + 1) #define LastKnownRequestProcessed(dpy) (((_XPrivDisplay)dpy)->last_request_read) #define ScreenOfDisplay(dpy,scr) (&((_XPrivDisplay)dpy)->screens[scr]) #define DefaultScreenOfDisplay(dpy) ScreenOfDisplay(dpy,DefaultScreen(dpy)) #define DisplayOfScreen(s) ((s)->display) #define RootWindowOfScreen(s) ((s)->root) #define BlackPixelOfScreen(s) ((s)->black_pixel) #define WhitePixelOfScreen(s) ((s)->white_pixel) #define DefaultColormapOfScreen(s) ((s)->cmap) #define DefaultDepthOfScreen(s) ((s)->root_depth) #define DefaultGCOfScreen(s) ((s)->default_gc) #define DefaultVisualOfScreen(s) ((s)->root_visual) #define WidthOfScreen(s) ((s)->width) #define HeightOfScreen(s) ((s)->height) #define WidthMMOfScreen(s) ((s)->mwidth) #define HeightMMOfScreen(s) ((s)->mheight) #define PlanesOfScreen(s) ((s)->root_depth) #define CellsOfScreen(s) (DefaultVisualOfScreen((s))->map_entries) #define MinCmapsOfScreen(s) ((s)->min_maps) #define MaxCmapsOfScreen(s) ((s)->max_maps) #define DoesSaveUnders(s) ((s)->save_unders) #define DoesBackingStore(s) ((s)->backing_store) #define EventMaskOfScreen(s) ((s)->root_input_mask) typedef struct _XExtData { int number; struct _XExtData *next; int (*free_private)( struct _XExtData *extension ); XPointer private_data; } XExtData; typedef struct { int extension; int major_opcode; int first_event; int first_error; } XExtCodes; typedef struct { int depth; int bits_per_pixel; int scanline_pad; } XPixmapFormatValues; typedef struct { int function; unsigned long plane_mask; unsigned long foreground; unsigned long background; int line_width; int line_style; int cap_style; int join_style; int fill_style; int fill_rule; int arc_mode; Pixmap tile; Pixmap stipple; int ts_x_origin; int ts_y_origin; Font font; int subwindow_mode; int graphics_exposures; int clip_x_origin; int clip_y_origin; Pixmap clip_mask; int dash_offset; char dashes; } XGCValues; typedef struct _XGC *GC; typedef struct { XExtData *ext_data; VisualID visualid; int class; unsigned long red_mask, green_mask, blue_mask; int bits_per_rgb; int map_entries; } Visual; typedef struct { int depth; int nvisuals; Visual *visuals; } Depth; struct _XDisplay; typedef struct { XExtData *ext_data; struct _XDisplay *display; Window root; int width, height; int mwidth, mheight; int ndepths; Depth *depths; int root_depth; Visual *root_visual; GC default_gc; Colormap cmap; unsigned long white_pixel; unsigned long black_pixel; int max_maps, min_maps; int backing_store; int save_unders; long root_input_mask; } Screen; typedef struct { XExtData *ext_data; int depth; int bits_per_pixel; int scanline_pad; } ScreenFormat; typedef struct { Pixmap background_pixmap; unsigned long background_pixel; Pixmap border_pixmap; unsigned long border_pixel; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; long event_mask; long do_not_propagate_mask; int override_redirect; Colormap colormap; Cursor cursor; } XSetWindowAttributes; typedef struct { int x, y; int width, height; int border_width; int depth; Visual *visual; Window root; int class; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; Colormap colormap; int map_installed; int map_state; long all_event_masks; long your_event_mask; long do_not_propagate_mask; int override_redirect; Screen *screen; } XWindowAttributes; typedef struct { int family; int length; char *address; } XHostAddress; typedef struct { int typelength; int valuelength; char *type; char *value; } XServerInterpretedAddress; typedef struct _XImage { int width, height; int xoffset; int format; char *data; int byte_order; int bitmap_unit; int bitmap_bit_order; int bitmap_pad; int depth; int bytes_per_line; int bits_per_pixel; unsigned long red_mask; unsigned long green_mask; unsigned long blue_mask; XPointer obdata; struct funcs { struct _XImage *(*create_image)( struct _XDisplay* , Visual* , unsigned int , int , int , char* , unsigned int , unsigned int , int , int ); int (*destroy_image) (struct _XImage *); unsigned long (*get_pixel) (struct _XImage *, int, int); int (*put_pixel) (struct _XImage *, int, int, unsigned long); struct _XImage *(*sub_image)(struct _XImage *, int, int, unsigned int, unsigned int); int (*add_pixel) (struct _XImage *, long); } f; } XImage; typedef struct { int x, y; int width, height; int border_width; Window sibling; int stack_mode; } XWindowChanges; typedef struct { unsigned long pixel; unsigned short red, green, blue; char flags; char pad; } XColor; typedef struct { short x1, y1, x2, y2; } XSegment; typedef struct { short x, y; } XPoint; typedef struct { short x, y; unsigned short width, height; } XRectangle; typedef struct { short x, y; unsigned short width, height; short angle1, angle2; } XArc; typedef struct { int key_click_percent; int bell_percent; int bell_pitch; int bell_duration; int led; int led_mode; int key; int auto_repeat_mode; } XKeyboardControl; typedef struct { int key_click_percent; int bell_percent; unsigned int bell_pitch, bell_duration; unsigned long led_mask; int global_auto_repeat; char auto_repeats[32]; } XKeyboardState; typedef struct { Time time; short x, y; } XTimeCoord; typedef struct { int max_keypermod; KeyCode *modifiermap; } XModifierKeymap; # 495 "/usr/include/X11/Xlib.h" 3 4 typedef struct _XDisplay Display; struct _XPrivate; struct _XrmHashBucketRec; typedef struct { XExtData *ext_data; struct _XPrivate *private1; int fd; int private2; int proto_major_version; int proto_minor_version; char *vendor; XID private3; XID private4; XID private5; int private6; XID (*resource_alloc)( struct _XDisplay* ); int byte_order; int bitmap_unit; int bitmap_pad; int bitmap_bit_order; int nformats; ScreenFormat *pixmap_format; int private8; int release; struct _XPrivate *private9, *private10; int qlen; unsigned long last_request_read; unsigned long request; XPointer private11; XPointer private12; XPointer private13; XPointer private14; unsigned max_request_size; struct _XrmHashBucketRec *db; int (*private15)( struct _XDisplay* ); char *display_name; int default_screen; int nscreens; Screen *screens; unsigned long motion_buffer; unsigned long private16; int min_keycode; int max_keycode; XPointer private17; XPointer private18; int private19; char *xdefaults; } *_XPrivDisplay; #undef _XEVENT_ typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int keycode; int same_screen; } XKeyEvent; typedef XKeyEvent XKeyPressedEvent; typedef XKeyEvent XKeyReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int button; int same_screen; } XButtonEvent; typedef XButtonEvent XButtonPressedEvent; typedef XButtonEvent XButtonReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; char is_hint; int same_screen; } XMotionEvent; typedef XMotionEvent XPointerMovedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; int mode; int detail; int same_screen; int focus; unsigned int state; } XCrossingEvent; typedef XCrossingEvent XEnterWindowEvent; typedef XCrossingEvent XLeaveWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int mode; int detail; } XFocusChangeEvent; typedef XFocusChangeEvent XFocusInEvent; typedef XFocusChangeEvent XFocusOutEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; char key_vector[32]; } XKeymapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int x, y; int width, height; int count; } XExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int x, y; int width, height; int count; int major_code; int minor_code; } XGraphicsExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int major_code; int minor_code; } XNoExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int state; } XVisibilityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; int override_redirect; } XCreateWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; } XDestroyWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int from_configure; } XUnmapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int override_redirect; } XMapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; } XMapRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; Window parent; int x, y; int override_redirect; } XReparentEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; int width, height; int border_width; Window above; int override_redirect; } XConfigureEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; } XGravityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int width, height; } XResizeRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; Window above; int detail; unsigned long value_mask; } XConfigureRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int place; } XCirculateEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int place; } XCirculateRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom atom; Time time; int state; } XPropertyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom selection; Time time; } XSelectionClearEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window owner; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Colormap colormap; int new; int state; } XColormapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom message_type; int format; union { char b[20]; short s[10]; long l[5]; } data; } XClientMessageEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int request; int first_keycode; int count; } XMappingEvent; typedef struct { int type; Display *display; XID resourceid; unsigned long serial; unsigned char error_code; unsigned char request_code; unsigned char minor_code; } XErrorEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; } XAnyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; } XGenericEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; unsigned int cookie; void *data; } XGenericEventCookie; typedef union _XEvent { int type; XAnyEvent xany; XKeyEvent xkey; XButtonEvent xbutton; XMotionEvent xmotion; XCrossingEvent xcrossing; XFocusChangeEvent xfocus; XExposeEvent xexpose; XGraphicsExposeEvent xgraphicsexpose; XNoExposeEvent xnoexpose; XVisibilityEvent xvisibility; XCreateWindowEvent xcreatewindow; XDestroyWindowEvent xdestroywindow; XUnmapEvent xunmap; XMapEvent xmap; XMapRequestEvent xmaprequest; XReparentEvent xreparent; XConfigureEvent xconfigure; XGravityEvent xgravity; XResizeRequestEvent xresizerequest; XConfigureRequestEvent xconfigurerequest; XCirculateEvent xcirculate; XCirculateRequestEvent xcirculaterequest; XPropertyEvent xproperty; XSelectionClearEvent xselectionclear; XSelectionRequestEvent xselectionrequest; XSelectionEvent xselection; XColormapEvent xcolormap; XClientMessageEvent xclient; XMappingEvent xmapping; XErrorEvent xerror; XKeymapEvent xkeymap; XGenericEvent xgeneric; XGenericEventCookie xcookie; long pad[24]; } XEvent; #define XAllocID(dpy) ((*((_XPrivDisplay)dpy)->resource_alloc)((dpy))) typedef struct { short lbearing; short rbearing; short width; short ascent; short descent; unsigned short attributes; } XCharStruct; typedef struct { Atom name; unsigned long card32; } XFontProp; typedef struct { XExtData *ext_data; Font fid; unsigned direction; unsigned min_char_or_byte2; unsigned max_char_or_byte2; unsigned min_byte1; unsigned max_byte1; int all_chars_exist; unsigned default_char; int n_properties; XFontProp *properties; XCharStruct min_bounds; XCharStruct max_bounds; XCharStruct *per_char; int ascent; int descent; } XFontStruct; typedef struct { char *chars; int nchars; int delta; Font font; } XTextItem; typedef struct { unsigned char byte1; unsigned char byte2; } XChar2b; typedef struct { XChar2b *chars; int nchars; int delta; Font font; } XTextItem16; typedef union { Display *display; GC gc; Visual *visual; Screen *screen; ScreenFormat *pixmap_format; XFontStruct *font; } XEDataObject; typedef struct { XRectangle max_ink_extent; XRectangle max_logical_extent; } XFontSetExtents; typedef struct _XOM *XOM; typedef struct _XOC *XOC, *XFontSet; typedef struct { char *chars; int nchars; int delta; XFontSet font_set; } XmbTextItem; typedef struct { wchar_t *chars; int nchars; int delta; XFontSet font_set; } XwcTextItem; #define XNRequiredCharSet "requiredCharSet" #define XNQueryOrientation "queryOrientation" #define XNBaseFontName "baseFontName" #define XNOMAutomatic "omAutomatic" #define XNMissingCharSet "missingCharSet" #define XNDefaultString "defaultString" #define XNOrientation "orientation" #define XNDirectionalDependentDrawing "directionalDependentDrawing" #define XNContextualDrawing "contextualDrawing" #define XNFontInfo "fontInfo" typedef struct { int charset_count; char **charset_list; } XOMCharSetList; typedef enum { XOMOrientation_LTR_TTB, XOMOrientation_RTL_TTB, XOMOrientation_TTB_LTR, XOMOrientation_TTB_RTL, XOMOrientation_Context } XOrientation; typedef struct { int num_orientation; XOrientation *orientation; } XOMOrientation; typedef struct { int num_font; XFontStruct **font_struct_list; char **font_name_list; } XOMFontInfo; typedef struct _XIM *XIM; typedef struct _XIC *XIC; typedef void (*XIMProc)( XIM, XPointer, XPointer ); typedef int (*XICProc)( XIC, XPointer, XPointer ); typedef void (*XIDProc)( Display*, XPointer, XPointer ); typedef unsigned long XIMStyle; typedef struct { unsigned short count_styles; XIMStyle *supported_styles; } XIMStyles; #define XIMPreeditArea 0x0001L #define XIMPreeditCallbacks 0x0002L #define XIMPreeditPosition 0x0004L #define XIMPreeditNothing 0x0008L #define XIMPreeditNone 0x0010L #define XIMStatusArea 0x0100L #define XIMStatusCallbacks 0x0200L #define XIMStatusNothing 0x0400L #define XIMStatusNone 0x0800L #define XNVaNestedList "XNVaNestedList" #define XNQueryInputStyle "queryInputStyle" #define XNClientWindow "clientWindow" #define XNInputStyle "inputStyle" #define XNFocusWindow "focusWindow" #define XNResourceName "resourceName" #define XNResourceClass "resourceClass" #define XNGeometryCallback "geometryCallback" #define XNDestroyCallback "destroyCallback" #define XNFilterEvents "filterEvents" #define XNPreeditStartCallback "preeditStartCallback" #define XNPreeditDoneCallback "preeditDoneCallback" #define XNPreeditDrawCallback "preeditDrawCallback" #define XNPreeditCaretCallback "preeditCaretCallback" #define XNPreeditStateNotifyCallback "preeditStateNotifyCallback" #define XNPreeditAttributes "preeditAttributes" #define XNStatusStartCallback "statusStartCallback" #define XNStatusDoneCallback "statusDoneCallback" #define XNStatusDrawCallback "statusDrawCallback" #define XNStatusAttributes "statusAttributes" #define XNArea "area" #define XNAreaNeeded "areaNeeded" #define XNSpotLocation "spotLocation" #define XNColormap "colorMap" #define XNStdColormap "stdColorMap" #define XNForeground "foreground" #define XNBackground "background" #define XNBackgroundPixmap "backgroundPixmap" #define XNFontSet "fontSet" #define XNLineSpace "lineSpace" #define XNCursor "cursor" #define XNQueryIMValuesList "queryIMValuesList" #define XNQueryICValuesList "queryICValuesList" #define XNVisiblePosition "visiblePosition" #define XNR6PreeditCallback "r6PreeditCallback" #define XNStringConversionCallback "stringConversionCallback" #define XNStringConversion "stringConversion" #define XNResetState "resetState" #define XNHotKey "hotKey" #define XNHotKeyState "hotKeyState" #define XNPreeditState "preeditState" #define XNSeparatorofNestedList "separatorofNestedList" #define XBufferOverflow -1 #define XLookupNone 1 #define XLookupChars 2 #define XLookupKeySym 3 #define XLookupBoth 4 typedef void *XVaNestedList; typedef struct { XPointer client_data; XIMProc callback; } XIMCallback; typedef struct { XPointer client_data; XICProc callback; } XICCallback; typedef unsigned long XIMFeedback; #define XIMReverse 1L #define XIMUnderline (1L<<1) #define XIMHighlight (1L<<2) #define XIMPrimary (1L<<5) #define XIMSecondary (1L<<6) #define XIMTertiary (1L<<7) #define XIMVisibleToForward (1L<<8) #define XIMVisibleToBackword (1L<<9) #define XIMVisibleToCenter (1L<<10) typedef struct _XIMText { unsigned short length; XIMFeedback *feedback; int encoding_is_wchar; union { char *multi_byte; wchar_t *wide_char; } string; } XIMText; typedef unsigned long XIMPreeditState; #define XIMPreeditUnKnown 0L #define XIMPreeditEnable 1L #define XIMPreeditDisable (1L<<1) typedef struct _XIMPreeditStateNotifyCallbackStruct { XIMPreeditState state; } XIMPreeditStateNotifyCallbackStruct; typedef unsigned long XIMResetState; #define XIMInitialState 1L #define XIMPreserveState (1L<<1) typedef unsigned long XIMStringConversionFeedback; #define XIMStringConversionLeftEdge (0x00000001) #define XIMStringConversionRightEdge (0x00000002) #define XIMStringConversionTopEdge (0x00000004) #define XIMStringConversionBottomEdge (0x00000008) #define XIMStringConversionConcealed (0x00000010) #define XIMStringConversionWrapped (0x00000020) typedef struct _XIMStringConversionText { unsigned short length; XIMStringConversionFeedback *feedback; int encoding_is_wchar; union { char *mbs; wchar_t *wcs; } string; } XIMStringConversionText; typedef unsigned short XIMStringConversionPosition; typedef unsigned short XIMStringConversionType; #define XIMStringConversionBuffer (0x0001) #define XIMStringConversionLine (0x0002) #define XIMStringConversionWord (0x0003) #define XIMStringConversionChar (0x0004) typedef unsigned short XIMStringConversionOperation; #define XIMStringConversionSubstitution (0x0001) #define XIMStringConversionRetrieval (0x0002) typedef enum { XIMForwardChar, XIMBackwardChar, XIMForwardWord, XIMBackwardWord, XIMCaretUp, XIMCaretDown, XIMNextLine, XIMPreviousLine, XIMLineStart, XIMLineEnd, XIMAbsolutePosition, XIMDontChange } XIMCaretDirection; typedef struct _XIMStringConversionCallbackStruct { XIMStringConversionPosition position; XIMCaretDirection direction; XIMStringConversionOperation operation; unsigned short factor; XIMStringConversionText *text; } XIMStringConversionCallbackStruct; typedef struct _XIMPreeditDrawCallbackStruct { int caret; int chg_first; int chg_length; XIMText *text; } XIMPreeditDrawCallbackStruct; typedef enum { XIMIsInvisible, XIMIsPrimary, XIMIsSecondary } XIMCaretStyle; typedef struct _XIMPreeditCaretCallbackStruct { int position; XIMCaretDirection direction; XIMCaretStyle style; } XIMPreeditCaretCallbackStruct; typedef enum { XIMTextType, XIMBitmapType } XIMStatusDataType; typedef struct _XIMStatusDrawCallbackStruct { XIMStatusDataType type; union { XIMText *text; Pixmap bitmap; } data; } XIMStatusDrawCallbackStruct; typedef struct _XIMHotKeyTrigger { KeySym keysym; int modifier; int modifier_mask; } XIMHotKeyTrigger; typedef struct _XIMHotKeyTriggers { int num_hot_key; XIMHotKeyTrigger *key; } XIMHotKeyTriggers; typedef unsigned long XIMHotKeyState; #define XIMHotKeyStateON (0x0001L) #define XIMHotKeyStateOFF (0x0002L) typedef struct { unsigned short count_values; char **supported_values; } XIMValuesList; extern int _Xdebug; extern XFontStruct *XLoadQueryFont( Display* , const char* ); extern XFontStruct *XQueryFont( Display* , XID ); extern XTimeCoord *XGetMotionEvents( Display* , Window , Time , Time , int* ); extern XModifierKeymap *XDeleteModifiermapEntry( XModifierKeymap* , KeyCode , int ); extern XModifierKeymap *XGetModifierMapping( Display* ); extern XModifierKeymap *XInsertModifiermapEntry( XModifierKeymap* , KeyCode , int ); extern XModifierKeymap *XNewModifiermap( int ); extern XImage *XCreateImage( Display* , Visual* , unsigned int , int , int , char* , unsigned int , unsigned int , int , int ); extern int XInitImage( XImage* ); extern XImage *XGetImage( Display* , Drawable , int , int , unsigned int , unsigned int , unsigned long , int ); extern XImage *XGetSubImage( Display* , Drawable , int , int , unsigned int , unsigned int , unsigned long , int , XImage* , int , int ); extern Display *XOpenDisplay( const char* ); extern void XrmInitialize( void ); extern char *XFetchBytes( Display* , int* ); extern char *XFetchBuffer( Display* , int* , int ); extern char *XGetAtomName( Display* , Atom ); extern int XGetAtomNames( Display* , Atom* , int , char** ); extern char *XGetDefault( Display* , const char* , const char* ); extern char *XDisplayName( const char* ); extern char *XKeysymToString( KeySym ); extern int (*XSynchronize( Display* , int ))( Display* ); extern int (*XSetAfterFunction( Display* , int (*) ( Display* ) ))( Display* ); extern Atom XInternAtom( Display* , const char* , int ); extern int XInternAtoms( Display* , char** , int , int , Atom* ); extern Colormap XCopyColormapAndFree( Display* , Colormap ); extern Colormap XCreateColormap( Display* , Window , Visual* , int ); extern Cursor XCreatePixmapCursor( Display* , Pixmap , Pixmap , XColor* , XColor* , unsigned int , unsigned int ); extern Cursor XCreateGlyphCursor( Display* , Font , Font , unsigned int , unsigned int , XColor const * , XColor const * ); extern Cursor XCreateFontCursor( Display* , unsigned int ); extern Font XLoadFont( Display* , const char* ); extern GC XCreateGC( Display* , Drawable , unsigned long , XGCValues* ); extern GContext XGContextFromGC( GC ); extern void XFlushGC( Display* , GC ); extern Pixmap XCreatePixmap( Display* , Drawable , unsigned int , unsigned int , unsigned int ); extern Pixmap XCreateBitmapFromData( Display* , Drawable , const char* , unsigned int , unsigned int ); extern Pixmap XCreatePixmapFromBitmapData( Display* , Drawable , char* , unsigned int , unsigned int , unsigned long , unsigned long , unsigned int ); extern Window XCreateSimpleWindow( Display* , Window , int , int , unsigned int , unsigned int , unsigned int , unsigned long , unsigned long ); extern Window XGetSelectionOwner( Display* , Atom ); extern Window XCreateWindow( Display* , Window , int , int , unsigned int , unsigned int , unsigned int , int , unsigned int , Visual* , unsigned long , XSetWindowAttributes* ); extern Colormap *XListInstalledColormaps( Display* , Window , int* ); extern char **XListFonts( Display* , const char* , int , int* ); extern char **XListFontsWithInfo( Display* , const char* , int , int* , XFontStruct** ); extern char **XGetFontPath( Display* , int* ); extern char **XListExtensions( Display* , int* ); extern Atom *XListProperties( Display* , Window , int* ); extern XHostAddress *XListHosts( Display* , int* , int* ); __attribute__((deprecated)) extern KeySym XKeycodeToKeysym( Display* , KeyCode , int ); extern KeySym XLookupKeysym( XKeyEvent* , int ); extern KeySym *XGetKeyboardMapping( Display* , KeyCode , int , int* ); extern KeySym XStringToKeysym( const char* ); extern long XMaxRequestSize( Display* ); extern long XExtendedMaxRequestSize( Display* ); extern char *XResourceManagerString( Display* ); extern char *XScreenResourceString( Screen* ); extern unsigned long XDisplayMotionBufferSize( Display* ); extern VisualID XVisualIDFromVisual( Visual* ); extern int XInitThreads( void ); extern void XLockDisplay( Display* ); extern void XUnlockDisplay( Display* ); extern XExtCodes *XInitExtension( Display* , const char* ); extern XExtCodes *XAddExtension( Display* ); extern XExtData *XFindOnExtensionList( XExtData** , int ); extern XExtData **XEHeadOfExtensionList( XEDataObject ); extern Window XRootWindow( Display* , int ); extern Window XDefaultRootWindow( Display* ); extern Window XRootWindowOfScreen( Screen* ); extern Visual *XDefaultVisual( Display* , int ); extern Visual *XDefaultVisualOfScreen( Screen* ); extern GC XDefaultGC( Display* , int ); extern GC XDefaultGCOfScreen( Screen* ); extern unsigned long XBlackPixel( Display* , int ); extern unsigned long XWhitePixel( Display* , int ); extern unsigned long XAllPlanes( void ); extern unsigned long XBlackPixelOfScreen( Screen* ); extern unsigned long XWhitePixelOfScreen( Screen* ); extern unsigned long XNextRequest( Display* ); extern unsigned long XLastKnownRequestProcessed( Display* ); extern char *XServerVendor( Display* ); extern char *XDisplayString( Display* ); extern Colormap XDefaultColormap( Display* , int ); extern Colormap XDefaultColormapOfScreen( Screen* ); extern Display *XDisplayOfScreen( Screen* ); extern Screen *XScreenOfDisplay( Display* , int ); extern Screen *XDefaultScreenOfDisplay( Display* ); extern long XEventMaskOfScreen( Screen* ); extern int XScreenNumberOfScreen( Screen* ); typedef int (*XErrorHandler) ( Display* , XErrorEvent* ); extern XErrorHandler XSetErrorHandler ( XErrorHandler ); typedef int (*XIOErrorHandler) ( Display* ); extern XIOErrorHandler XSetIOErrorHandler ( XIOErrorHandler ); extern XPixmapFormatValues *XListPixmapFormats( Display* , int* ); extern int *XListDepths( Display* , int , int* ); extern int XReconfigureWMWindow( Display* , Window , int , unsigned int , XWindowChanges* ); extern int XGetWMProtocols( Display* , Window , Atom** , int* ); extern int XSetWMProtocols( Display* , Window , Atom* , int ); extern int XIconifyWindow( Display* , Window , int ); extern int XWithdrawWindow( Display* , Window , int ); extern int XGetCommand( Display* , Window , char*** , int* ); extern int XGetWMColormapWindows( Display* , Window , Window** , int* ); extern int XSetWMColormapWindows( Display* , Window , Window* , int ); extern void XFreeStringList( char** ); extern int XSetTransientForHint( Display* , Window , Window ); extern int XActivateScreenSaver( Display* ); extern int XAddHost( Display* , XHostAddress* ); extern int XAddHosts( Display* , XHostAddress* , int ); extern int XAddToExtensionList( struct _XExtData** , XExtData* ); extern int XAddToSaveSet( Display* , Window ); extern int XAllocColor( Display* , Colormap , XColor* ); extern int XAllocColorCells( Display* , Colormap , int , unsigned long* , unsigned int , unsigned long* , unsigned int ); extern int XAllocColorPlanes( Display* , Colormap , int , unsigned long* , int , int , int , int , unsigned long* , unsigned long* , unsigned long* ); extern int XAllocNamedColor( Display* , Colormap , const char* , XColor* , XColor* ); extern int XAllowEvents( Display* , int , Time ); extern int XAutoRepeatOff( Display* ); extern int XAutoRepeatOn( Display* ); extern int XBell( Display* , int ); extern int XBitmapBitOrder( Display* ); extern int XBitmapPad( Display* ); extern int XBitmapUnit( Display* ); extern int XCellsOfScreen( Screen* ); extern int XChangeActivePointerGrab( Display* , unsigned int , Cursor , Time ); extern int XChangeGC( Display* , GC , unsigned long , XGCValues* ); extern int XChangeKeyboardControl( Display* , unsigned long , XKeyboardControl* ); extern int XChangeKeyboardMapping( Display* , int , int , KeySym* , int ); extern int XChangePointerControl( Display* , int , int , int , int , int ); extern int XChangeProperty( Display* , Window , Atom , Atom , int , int , const unsigned char* , int ); extern int XChangeSaveSet( Display* , Window , int ); extern int XChangeWindowAttributes( Display* , Window , unsigned long , XSetWindowAttributes* ); extern int XCheckIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XCheckMaskEvent( Display* , long , XEvent* ); extern int XCheckTypedEvent( Display* , int , XEvent* ); extern int XCheckTypedWindowEvent( Display* , Window , int , XEvent* ); extern int XCheckWindowEvent( Display* , Window , long , XEvent* ); extern int XCirculateSubwindows( Display* , Window , int ); extern int XCirculateSubwindowsDown( Display* , Window ); extern int XCirculateSubwindowsUp( Display* , Window ); extern int XClearArea( Display* , Window , int , int , unsigned int , unsigned int , int ); extern int XClearWindow( Display* , Window ); extern int XCloseDisplay( Display* ); extern int XConfigureWindow( Display* , Window , unsigned int , XWindowChanges* ); extern int XConnectionNumber( Display* ); extern int XConvertSelection( Display* , Atom , Atom , Atom , Window , Time ); extern int XCopyArea( Display* , Drawable , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XCopyGC( Display* , GC , unsigned long , GC ); extern int XCopyPlane( Display* , Drawable , Drawable , GC , int , int , unsigned int , unsigned int , int , int , unsigned long ); extern int XDefaultDepth( Display* , int ); extern int XDefaultDepthOfScreen( Screen* ); extern int XDefaultScreen( Display* ); extern int XDefineCursor( Display* , Window , Cursor ); extern int XDeleteProperty( Display* , Window , Atom ); extern int XDestroyWindow( Display* , Window ); extern int XDestroySubwindows( Display* , Window ); extern int XDoesBackingStore( Screen* ); extern int XDoesSaveUnders( Screen* ); extern int XDisableAccessControl( Display* ); extern int XDisplayCells( Display* , int ); extern int XDisplayHeight( Display* , int ); extern int XDisplayHeightMM( Display* , int ); extern int XDisplayKeycodes( Display* , int* , int* ); extern int XDisplayPlanes( Display* , int ); extern int XDisplayWidth( Display* , int ); extern int XDisplayWidthMM( Display* , int ); extern int XDrawArc( Display* , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XDrawArcs( Display* , Drawable , GC , XArc* , int ); extern int XDrawImageString( Display* , Drawable , GC , int , int , const char* , int ); extern int XDrawImageString16( Display* , Drawable , GC , int , int , const XChar2b* , int ); extern int XDrawLine( Display* , Drawable , GC , int , int , int , int ); extern int XDrawLines( Display* , Drawable , GC , XPoint* , int , int ); extern int XDrawPoint( Display* , Drawable , GC , int , int ); extern int XDrawPoints( Display* , Drawable , GC , XPoint* , int , int ); extern int XDrawRectangle( Display* , Drawable , GC , int , int , unsigned int , unsigned int ); extern int XDrawRectangles( Display* , Drawable , GC , XRectangle* , int ); extern int XDrawSegments( Display* , Drawable , GC , XSegment* , int ); extern int XDrawString( Display* , Drawable , GC , int , int , const char* , int ); extern int XDrawString16( Display* , Drawable , GC , int , int , const XChar2b* , int ); extern int XDrawText( Display* , Drawable , GC , int , int , XTextItem* , int ); extern int XDrawText16( Display* , Drawable , GC , int , int , XTextItem16* , int ); extern int XEnableAccessControl( Display* ); extern int XEventsQueued( Display* , int ); extern int XFetchName( Display* , Window , char** ); extern int XFillArc( Display* , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XFillArcs( Display* , Drawable , GC , XArc* , int ); extern int XFillPolygon( Display* , Drawable , GC , XPoint* , int , int , int ); extern int XFillRectangle( Display* , Drawable , GC , int , int , unsigned int , unsigned int ); extern int XFillRectangles( Display* , Drawable , GC , XRectangle* , int ); extern int XFlush( Display* ); extern int XForceScreenSaver( Display* , int ); extern int XFree( void* ); extern int XFreeColormap( Display* , Colormap ); extern int XFreeColors( Display* , Colormap , unsigned long* , int , unsigned long ); extern int XFreeCursor( Display* , Cursor ); extern int XFreeExtensionList( char** ); extern int XFreeFont( Display* , XFontStruct* ); extern int XFreeFontInfo( char** , XFontStruct* , int ); extern int XFreeFontNames( char** ); extern int XFreeFontPath( char** ); extern int XFreeGC( Display* , GC ); extern int XFreeModifiermap( XModifierKeymap* ); extern int XFreePixmap( Display* , Pixmap ); extern int XGeometry( Display* , int , const char* , const char* , unsigned int , unsigned int , unsigned int , int , int , int* , int* , int* , int* ); extern int XGetErrorDatabaseText( Display* , const char* , const char* , const char* , char* , int ); extern int XGetErrorText( Display* , int , char* , int ); extern int XGetFontProperty( XFontStruct* , Atom , unsigned long* ); extern int XGetGCValues( Display* , GC , unsigned long , XGCValues* ); extern int XGetGeometry( Display* , Drawable , Window* , int* , int* , unsigned int* , unsigned int* , unsigned int* , unsigned int* ); extern int XGetIconName( Display* , Window , char** ); extern int XGetInputFocus( Display* , Window* , int* ); extern int XGetKeyboardControl( Display* , XKeyboardState* ); extern int XGetPointerControl( Display* , int* , int* , int* ); extern int XGetPointerMapping( Display* , unsigned char* , int ); extern int XGetScreenSaver( Display* , int* , int* , int* , int* ); extern int XGetTransientForHint( Display* , Window , Window* ); extern int XGetWindowProperty( Display* , Window , Atom , long , long , int , Atom , Atom* , int* , unsigned long* , unsigned long* , unsigned char** ); extern int XGetWindowAttributes( Display* , Window , XWindowAttributes* ); extern int XGrabButton( Display* , unsigned int , unsigned int , Window , int , unsigned int , int , int , Window , Cursor ); extern int XGrabKey( Display* , int , unsigned int , Window , int , int , int ); extern int XGrabKeyboard( Display* , Window , int , int , int , Time ); extern int XGrabPointer( Display* , Window , int , unsigned int , int , int , Window , Cursor , Time ); extern int XGrabServer( Display* ); extern int XHeightMMOfScreen( Screen* ); extern int XHeightOfScreen( Screen* ); extern int XIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XImageByteOrder( Display* ); extern int XInstallColormap( Display* , Colormap ); extern KeyCode XKeysymToKeycode( Display* , KeySym ); extern int XKillClient( Display* , XID ); extern int XLookupColor( Display* , Colormap , const char* , XColor* , XColor* ); extern int XLowerWindow( Display* , Window ); extern int XMapRaised( Display* , Window ); extern int XMapSubwindows( Display* , Window ); extern int XMapWindow( Display* , Window ); extern int XMaskEvent( Display* , long , XEvent* ); extern int XMaxCmapsOfScreen( Screen* ); extern int XMinCmapsOfScreen( Screen* ); extern int XMoveResizeWindow( Display* , Window , int , int , unsigned int , unsigned int ); extern int XMoveWindow( Display* , Window , int , int ); extern int XNextEvent( Display* , XEvent* ); extern int XNoOp( Display* ); extern int XParseColor( Display* , Colormap , const char* , XColor* ); extern int XParseGeometry( const char* , int* , int* , unsigned int* , unsigned int* ); extern int XPeekEvent( Display* , XEvent* ); extern int XPeekIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XPending( Display* ); extern int XPlanesOfScreen( Screen* ); extern int XProtocolRevision( Display* ); extern int XProtocolVersion( Display* ); extern int XPutBackEvent( Display* , XEvent* ); extern int XPutImage( Display* , Drawable , GC , XImage* , int , int , int , int , unsigned int , unsigned int ); extern int XQLength( Display* ); extern int XQueryBestCursor( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestSize( Display* , int , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestStipple( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestTile( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryColor( Display* , Colormap , XColor* ); extern int XQueryColors( Display* , Colormap , XColor* , int ); extern int XQueryExtension( Display* , const char* , int* , int* , int* ); extern int XQueryKeymap( Display* , char [32] ); extern int XQueryPointer( Display* , Window , Window* , Window* , int* , int* , int* , int* , unsigned int* ); extern int XQueryTextExtents( Display* , XID , const char* , int , int* , int* , int* , XCharStruct* ); extern int XQueryTextExtents16( Display* , XID , const XChar2b* , int , int* , int* , int* , XCharStruct* ); extern int XQueryTree( Display* , Window , Window* , Window* , Window** , unsigned int* ); extern int XRaiseWindow( Display* , Window ); extern int XReadBitmapFile( Display* , Drawable , const char* , unsigned int* , unsigned int* , Pixmap* , int* , int* ); extern int XReadBitmapFileData( const char* , unsigned int* , unsigned int* , unsigned char** , int* , int* ); extern int XRebindKeysym( Display* , KeySym , KeySym* , int , const unsigned char* , int ); extern int XRecolorCursor( Display* , Cursor , XColor* , XColor* ); extern int XRefreshKeyboardMapping( XMappingEvent* ); extern int XRemoveFromSaveSet( Display* , Window ); extern int XRemoveHost( Display* , XHostAddress* ); extern int XRemoveHosts( Display* , XHostAddress* , int ); extern int XReparentWindow( Display* , Window , Window , int , int ); extern int XResetScreenSaver( Display* ); extern int XResizeWindow( Display* , Window , unsigned int , unsigned int ); extern int XRestackWindows( Display* , Window* , int ); extern int XRotateBuffers( Display* , int ); extern int XRotateWindowProperties( Display* , Window , Atom* , int , int ); extern int XScreenCount( Display* ); extern int XSelectInput( Display* , Window , long ); extern int XSendEvent( Display* , Window , int , long , XEvent* ); extern int XSetAccessControl( Display* , int ); extern int XSetArcMode( Display* , GC , int ); extern int XSetBackground( Display* , GC , unsigned long ); extern int XSetClipMask( Display* , GC , Pixmap ); extern int XSetClipOrigin( Display* , GC , int , int ); extern int XSetClipRectangles( Display* , GC , int , int , XRectangle* , int , int ); extern int XSetCloseDownMode( Display* , int ); extern int XSetCommand( Display* , Window , char** , int ); extern int XSetDashes( Display* , GC , int , const char* , int ); extern int XSetFillRule( Display* , GC , int ); extern int XSetFillStyle( Display* , GC , int ); extern int XSetFont( Display* , GC , Font ); extern int XSetFontPath( Display* , char** , int ); extern int XSetForeground( Display* , GC , unsigned long ); extern int XSetFunction( Display* , GC , int ); extern int XSetGraphicsExposures( Display* , GC , int ); extern int XSetIconName( Display* , Window , const char* ); extern int XSetInputFocus( Display* , Window , int , Time ); extern int XSetLineAttributes( Display* , GC , unsigned int , int , int , int ); extern int XSetModifierMapping( Display* , XModifierKeymap* ); extern int XSetPlaneMask( Display* , GC , unsigned long ); extern int XSetPointerMapping( Display* , const unsigned char* , int ); extern int XSetScreenSaver( Display* , int , int , int , int ); extern int XSetSelectionOwner( Display* , Atom , Window , Time ); extern int XSetState( Display* , GC , unsigned long , unsigned long , int , unsigned long ); extern int XSetStipple( Display* , GC , Pixmap ); extern int XSetSubwindowMode( Display* , GC , int ); extern int XSetTSOrigin( Display* , GC , int , int ); extern int XSetTile( Display* , GC , Pixmap ); extern int XSetWindowBackground( Display* , Window , unsigned long ); extern int XSetWindowBackgroundPixmap( Display* , Window , Pixmap ); extern int XSetWindowBorder( Display* , Window , unsigned long ); extern int XSetWindowBorderPixmap( Display* , Window , Pixmap ); extern int XSetWindowBorderWidth( Display* , Window , unsigned int ); extern int XSetWindowColormap( Display* , Window , Colormap ); extern int XStoreBuffer( Display* , const char* , int , int ); extern int XStoreBytes( Display* , const char* , int ); extern int XStoreColor( Display* , Colormap , XColor* ); extern int XStoreColors( Display* , Colormap , XColor* , int ); extern int XStoreName( Display* , Window , const char* ); extern int XStoreNamedColor( Display* , Colormap , const char* , unsigned long , int ); extern int XSync( Display* , int ); extern int XTextExtents( XFontStruct* , const char* , int , int* , int* , int* , XCharStruct* ); extern int XTextExtents16( XFontStruct* , const XChar2b* , int , int* , int* , int* , XCharStruct* ); extern int XTextWidth( XFontStruct* , const char* , int ); extern int XTextWidth16( XFontStruct* , const XChar2b* , int ); extern int XTranslateCoordinates( Display* , Window , Window , int , int , int* , int* , Window* ); extern int XUndefineCursor( Display* , Window ); extern int XUngrabButton( Display* , unsigned int , unsigned int , Window ); extern int XUngrabKey( Display* , int , unsigned int , Window ); extern int XUngrabKeyboard( Display* , Time ); extern int XUngrabPointer( Display* , Time ); extern int XUngrabServer( Display* ); extern int XUninstallColormap( Display* , Colormap ); extern int XUnloadFont( Display* , Font ); extern int XUnmapSubwindows( Display* , Window ); extern int XUnmapWindow( Display* , Window ); extern int XVendorRelease( Display* ); extern int XWarpPointer( Display* , Window , Window , int , int , unsigned int , unsigned int , int , int ); extern int XWidthMMOfScreen( Screen* ); extern int XWidthOfScreen( Screen* ); extern int XWindowEvent( Display* , Window , long , XEvent* ); extern int XWriteBitmapFile( Display* , const char* , Pixmap , unsigned int , unsigned int , int , int ); extern int XSupportsLocale (void); extern char *XSetLocaleModifiers( const char* ); extern XOM XOpenOM( Display* , struct _XrmHashBucketRec* , const char* , const char* ); extern int XCloseOM( XOM ); extern char *XSetOMValues( XOM , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetOMValues( XOM , ... ) __attribute__ ((__sentinel__(0))); extern Display *XDisplayOfOM( XOM ); extern char *XLocaleOfOM( XOM ); extern XOC XCreateOC( XOM , ... ) __attribute__ ((__sentinel__(0))); extern void XDestroyOC( XOC ); extern XOM XOMOfOC( XOC ); extern char *XSetOCValues( XOC , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetOCValues( XOC , ... ) __attribute__ ((__sentinel__(0))); extern XFontSet XCreateFontSet( Display* , const char* , char*** , int* , char** ); extern void XFreeFontSet( Display* , XFontSet ); extern int XFontsOfFontSet( XFontSet , XFontStruct*** , char*** ); extern char *XBaseFontNameListOfFontSet( XFontSet ); extern char *XLocaleOfFontSet( XFontSet ); extern int XContextDependentDrawing( XFontSet ); extern int XDirectionalDependentDrawing( XFontSet ); extern int XContextualDrawing( XFontSet ); extern XFontSetExtents *XExtentsOfFontSet( XFontSet ); extern int XmbTextEscapement( XFontSet , const char* , int ); extern int XwcTextEscapement( XFontSet , const wchar_t* , int ); extern int Xutf8TextEscapement( XFontSet , const char* , int ); extern int XmbTextExtents( XFontSet , const char* , int , XRectangle* , XRectangle* ); extern int XwcTextExtents( XFontSet , const wchar_t* , int , XRectangle* , XRectangle* ); extern int Xutf8TextExtents( XFontSet , const char* , int , XRectangle* , XRectangle* ); extern int XmbTextPerCharExtents( XFontSet , const char* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern int XwcTextPerCharExtents( XFontSet , const wchar_t* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern int Xutf8TextPerCharExtents( XFontSet , const char* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern void XmbDrawText( Display* , Drawable , GC , int , int , XmbTextItem* , int ); extern void XwcDrawText( Display* , Drawable , GC , int , int , XwcTextItem* , int ); extern void Xutf8DrawText( Display* , Drawable , GC , int , int , XmbTextItem* , int ); extern void XmbDrawString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XwcDrawString( Display* , Drawable , XFontSet , GC , int , int , const wchar_t* , int ); extern void Xutf8DrawString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XmbDrawImageString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XwcDrawImageString( Display* , Drawable , XFontSet , GC , int , int , const wchar_t* , int ); extern void Xutf8DrawImageString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern XIM XOpenIM( Display* , struct _XrmHashBucketRec* , char* , char* ); extern int XCloseIM( XIM ); extern char *XGetIMValues( XIM , ... ) __attribute__ ((__sentinel__(0))); extern char *XSetIMValues( XIM , ... ) __attribute__ ((__sentinel__(0))); extern Display *XDisplayOfIM( XIM ); extern char *XLocaleOfIM( XIM ); extern XIC XCreateIC( XIM , ... ) __attribute__ ((__sentinel__(0))); extern void XDestroyIC( XIC ); extern void XSetICFocus( XIC ); extern void XUnsetICFocus( XIC ); extern wchar_t *XwcResetIC( XIC ); extern char *XmbResetIC( XIC ); extern char *Xutf8ResetIC( XIC ); extern char *XSetICValues( XIC , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetICValues( XIC , ... ) __attribute__ ((__sentinel__(0))); extern XIM XIMOfIC( XIC ); extern int XFilterEvent( XEvent* , Window ); extern int XmbLookupString( XIC , XKeyPressedEvent* , char* , int , KeySym* , int* ); extern int XwcLookupString( XIC , XKeyPressedEvent* , wchar_t* , int , KeySym* , int* ); extern int Xutf8LookupString( XIC , XKeyPressedEvent* , char* , int , KeySym* , int* ); extern XVaNestedList XVaCreateNestedList( int , ... ) __attribute__ ((__sentinel__(0))); extern int XRegisterIMInstantiateCallback( Display* , struct _XrmHashBucketRec* , char* , char* , XIDProc , XPointer ); extern int XUnregisterIMInstantiateCallback( Display* , struct _XrmHashBucketRec* , char* , char* , XIDProc , XPointer ); typedef void (*XConnectionWatchProc)( Display* , XPointer , int , int , XPointer* ); extern int XInternalConnectionNumbers( Display* , int** , int* ); extern void XProcessInternalConnection( Display* , int ); extern int XAddConnectionWatch( Display* , XConnectionWatchProc , XPointer ); extern void XRemoveConnectionWatch( Display* , XConnectionWatchProc , XPointer ); extern void XSetAuthorization( char * , int , char * , int ); extern int _Xmbtowc( wchar_t * , char * , int ); extern int _Xwctomb( char * , wchar_t ); extern int XGetEventData( Display* , XGenericEventCookie* ); extern void XFreeEventData( Display* , XGenericEventCookie* ); # 3 "/tmp/petsc-W4It8W/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['X11/Xlib.h'] in ['/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.X(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:751) TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:751) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.Triangle(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.hwloc(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:692) TESTING: configureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:692) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional hwloc Checking for library in Compiler specific search HWLOC: [] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library [] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_hwloc_topology_init': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `hwloc_topology_init' collect2: ld returned 1 exit status Popping language C Checking for library in Compiler specific search HWLOC: ['libhwloc.a'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lhwloc -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: ld returned 1 exit status Popping language C Checking for library in Compiler specific search HWLOC: ['libhwloc.a', 'libxml2.a'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lhwloc -lxml2 -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: ld returned 1 exit status Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a'] Contents: ['sbin', 'var', 'include', 'bin', 'etc', 'texlive', 'src', 'man.old', 'share', 'lib', 'man', 'games'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: ld returned 1 exit status Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a', 'libxml2.a'] Contents: ['sbin', 'var', 'include', 'bin', 'etc', 'texlive', 'src', 'man.old', 'share', 'lib', 'man', 'games'] ================================================================================ TEST check from config.libraries(/home/tisaac/Projects/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -lxml2 -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lhwloc collect2: ld returned 1 exit status Popping language C HWLOC: DirPath not found.. skipping: /usr/local/lib64 HWLOC: SearchDir DirPath not found.. skipping: /opt/local ================================================================================ TEST checkSharedLibrary from config.packages.hwloc(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:751) TESTING: checkSharedLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:751) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.Numpy(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.Numpy(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/petsc4py.py:107) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:107) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/mpi4py.py:71) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:71) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ascem-io(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pflotran(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.viennacl(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureVecCUDA from config.utilities.veccuda(/home/tisaac/Projects/petsc/config/BuildSystem/config/utilities/veccuda.py:15) TESTING: configureVecCUDA from config.utilities.veccuda(config/BuildSystem/config/utilities/veccuda.py:15) Configure VecCUDA as fallback CUDA vector if CUSP and VIENNACL are not present ================================================================================ TEST locateCMake from config.packages.cmake(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/cmake.py:34) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:34) Looking for default CMake executable Checking for program /usr/lib/mutt/cmake...not found Checking for program /home/tisaac/.local/bin/cmake...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/cmake...not found Checking for program /home/tisaac/.bin/cmake...not found Checking for program /usr/lib/lightdm/lightdm/cmake...not found Checking for program /usr/local/sbin/cmake...not found Checking for program /usr/local/bin/cmake...not found Checking for program /usr/sbin/cmake...not found Checking for program /usr/bin/cmake...found Defined make macro "CMAKE" to "/usr/bin/cmake" Looking for default CTest executable Checking for program /usr/lib/mutt/ctest...not found Checking for program /home/tisaac/.local/bin/ctest...not found Checking for program /usr/local/texlive/2015/bin/x86_64-linux/ctest...not found Checking for program /home/tisaac/.bin/ctest...not found Checking for program /usr/lib/lightdm/lightdm/ctest...not found Checking for program /usr/local/sbin/ctest...not found Checking for program /usr/local/bin/ctest...not found Checking for program /usr/sbin/ctest...not found Checking for program /usr/bin/ctest...found Defined make macro "CTEST" to "/usr/bin/ctest" ================================================================================ TEST alternateConfigureLibrary from config.packages.alquimia(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.unittestcpp(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.eigen(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.metis(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pragmatic(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.parmetis(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Zoltan(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.openblas(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fblaslapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:339) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:339) ================================================================================ Checking for a functional BLAS and LAPACK in IRIX Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libcomplib.sgimath.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lcomplib.sgimath -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libcomplib.sgimath.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lcomplib.sgimath -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libcomplib.sgimath.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lcomplib.sgimath -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcomplib.sgimath collect2: ld returned 1 exit status Popping language C Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for a functional BLAS and LAPACK in Another IRIX Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libscs.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lscs -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lscs collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libscs.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lscs -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lscs collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libscs.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lscs -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lscs collect2: ld returned 1 exit status Popping language C Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for a functional BLAS and LAPACK in Compaq/Alpha Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libcxml.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lcxml -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcxml collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libcxml.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lcxml -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcxml collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libcxml.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lcxml -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lcxml collect2: ld returned 1 exit status Popping language C Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libessl.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lessl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lessl collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libessl.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lessl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lessl collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libessl.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lessl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lessl collect2: ld returned 1 exit status Popping language C Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library for Blue Gene ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libesslbg.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lesslbg -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lesslbg collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libesslbg.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lesslbg -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lesslbg collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libesslbg.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lesslbg -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lesslbg collect2: ld returned 1 exit status Popping language C Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler libraries ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library [''] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_ddot_': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `ddot_' collect2: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library [''] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_ddot': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `ddot' collect2: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library [''] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_ddot_': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `ddot_' collect2: ld returned 1 exit status Popping language C Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['libblas.a'] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -lblas -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBBLAS" to "1" Popping language C Checking for functions [dgetrs_] in library ['liblapack.a'] ['libblas.a', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -llapack -lblas -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for functions [dgeev_] in library ['liblapack.a'] ['libblas.a', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -llapack -lblas -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBLAPACK" to "1" Popping language C Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST check64BitBLASIndices from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:489) TESTING: check64BitBLASIndices from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:489) Check for and use 64bit integer blas ================================================================================ TEST checkESSL from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:406) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:406) Check for the IBM ESSL library Checking for functions [iessl] in library ['liblapack.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -llapack -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `iessl' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:422) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:422) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['liblapack.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -llapack -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `ipessl' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST checkMKL from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:414) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:414) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['liblapack.a'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -llapack -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:447) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:447) Check for missing LAPACK routines Checking for functions [dtrsen_ dgerfs_ dgges_ dtgsen_ dgesvd_ dgetrf_ dgetrs_ dgeev_ dgelss_ dsyev_ dsyevx_ dsygv_ dsygvx_ dpotrf_ dpotrs_ dstebz_ dpttrf_ dpttrs_ dstein_ dorgqr_ dgeqrf_ dgesv_ dhseqr_ dsteqr_] in library ['liblapack.a'] ['libblas.a', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dgesvd_(); static void _check_dgesvd_() { dgesvd_(); } char dgetrf_(); static void _check_dgetrf_() { dgetrf_(); } char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } char dgeev_(); static void _check_dgeev_() { dgeev_(); } char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dsyev_(); static void _check_dsyev_() { dsyev_(); } char dsyevx_(); static void _check_dsyevx_() { dsyevx_(); } char dsygv_(); static void _check_dsygv_() { dsygv_(); } char dsygvx_(); static void _check_dsygvx_() { dsygvx_(); } char dpotrf_(); static void _check_dpotrf_() { dpotrf_(); } char dpotrs_(); static void _check_dpotrs_() { dpotrs_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dpttrf_(); static void _check_dpttrf_() { dpttrf_(); } char dpttrs_(); static void _check_dpttrs_() { dpttrs_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dgeqrf_(); static void _check_dgeqrf_() { dgeqrf_(); } char dgesv_(); static void _check_dgesv_() { dgesv_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } int main() { _check_dtrsen_(); _check_dgerfs_(); _check_dgges_(); _check_dtgsen_(); _check_dgesvd_(); _check_dgetrf_(); _check_dgetrs_(); _check_dgeev_(); _check_dgelss_(); _check_dsyev_(); _check_dsyevx_(); _check_dsygv_(); _check_dsygvx_(); _check_dpotrf_(); _check_dpotrs_(); _check_dstebz_(); _check_dpttrf_(); _check_dpttrs_(); _check_dstein_(); _check_dorgqr_(); _check_dgeqrf_(); _check_dgesv_(); _check_dhseqr_(); _check_dsteqr_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -llapack -lblas -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBLAPACK" to "1" Popping language C ================================================================================ TEST checklsame from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:462) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:462) Do the BLAS/LAPACK libraries have a valid lsame() function with correction binding. Lion and xcode 4.2 do not Checking for functions [lsame_] in library ['liblapack.a', 'libblas.a', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -llapack -lblas -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_LIBLAPACK" to "1" Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBMPIFORT" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBQUADMATH" to "1" Defined "HAVE_LIBM" to "1" Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.setCompilers/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.setCompilers/libconftest.so -shared -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.setCompilers/conftest.o -llapack -lblas -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl ================================================================================ TEST checksdotreturnsdouble from config.packages.BlasLapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/packages/BlasLapack.py:524) TESTING: checksdotreturnsdouble from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:524) Determines if BLAS sdot routine returns a float or a double Checking if sdot() returns a float or a double Pushing language C All intermediate test results are stored in /tmp/petsc-W4It8W/config.packages.BlasLapack Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *output = fopen("runtimetestoutput","w"); extern float sdot_(int*,float*,int *,float*,int*); float x1[1] = {3.0}; int one1 = 1; float sdotresult = sdot_(&one1,x1,&one1,x1,&one1); fprintf(output, " '--known-sdot-returns-double=%d',\n",(sdotresult != 9.0)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest.o -llapack -lblas -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest Executing: /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest Popping language C Checking if snrm() returns a float or a double Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *output = fopen("runtimetestoutput","w"); extern float snrm2_(int*,float*,int*); float x2[1] = {3.0}; int one2 = 1; float normresult = snrm2_(&one2,x2,&one2); fprintf(output, " '--known-snrm2-returns-double=%d',\n",(normresult != 3.0)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest.o -llapack -lblas -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest Executing: /tmp/petsc-W4It8W/config.packages.BlasLapack/conftest Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.SuiteSparse(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chombo(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.spai(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.elemental(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pARMS(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_cpardiso(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ml(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scalapack(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.strumpack(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.strumpack(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MUMPS(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hypre(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_pardiso(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_DIST(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.Regression(/home/tisaac/Projects/petsc/config/PETSc/Regression.py:36) TESTING: configureRegression from PETSc.Regression(config/PETSc/Regression.py:36) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to "C C_Info C_NotSingle C_X Fortran Fortran_NotSingle F90_NotSingle Fortran_NoComplex_NotSingle C_NoComplex_NotSingle Cxx F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex DATAFILESPATH Cxx_DATAFILESPATH Fortran_DATAFILESPATH DOUBLEINT32 Fortran_DOUBLEINT32" ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Trilinos(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mstk(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.mstk(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.amanzi(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.amanzi(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.xSDKTrilinos(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PaStiX(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_MT(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.SuperLU_MT(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.sundials(/home/tisaac/Projects/petsc/config/BuildSystem/config/package.py:755) TESTING: alternateConfigureLibrary from config.packages.sundials(config/BuildSystem/config/package.py:755) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:848) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:848) All intermediate test results are stored in /tmp/petsc-W4It8W/PETSc.Configure Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:4:15: error: ?RTLD_DEFAULT? undeclared here (not in a function) Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:651) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:651) Sees if there are any prefetch functions supported Executing: uname -s stdout: Linux Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" Popping language C ================================================================================ TEST configureUnused from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:712) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:712) Sees if __attribute((unused)) is supported Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:7:5: warning: unused variable ?j? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "UNUSED" to "__attribute((unused))" Popping language C ================================================================================ TEST configureDeprecated from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:730) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:730) Check if __attribute((deprecated)) is supported Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:3:38: warning: ?myfunc? defined but not used [-Wunused-function] Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED(why)" to "__attribute((deprecated))" Popping language C ================================================================================ TEST configureIsatty from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:724) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:724) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ================================================================================ TEST configureExpect from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:797) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:797) Sees if the __builtin_expect directive is supported Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" Popping language C ================================================================================ TEST configureAlign from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:750) TESTING: configureAlign from PETSc.Configure(config/PETSc/Configure.py:750) Check if __attribute(align) is supported Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { struct mystruct {int myint;} __attribute((aligned(16))); FILE *f = fopen("conftestalign", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(struct mystruct)); ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Testing executable /tmp/petsc-W4It8W/PETSc.Configure/conftest to see if it can be run Executing: /tmp/petsc-W4It8W/PETSc.Configure/conftest Executing: /tmp/petsc-W4It8W/PETSc.Configure/conftest Popping language C Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned (size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ================================================================================ TEST configureFunctionName from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:804) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:804) Sees if the compiler supports __func__ or a variant. Falls back on __FUNCT__ which PETSc source defines, but most users do not, thus stack traces through user code are better when the compiler's variant is used. Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language C Defined "FUNCTION_NAME_C" to "__func__" Pushing language Cxx Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language CXX Popping language CXX Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Popping language Cxx Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:826) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:826) Determine what to use for uintptr_t Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:6:18: warning: unused variable ?i? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" Popping language C ================================================================================ TEST configureSolaris from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:853) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:853) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:866) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:866) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:872) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:872) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetComputerName] in library ['kernel32'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['advapi32'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['User32.lib'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['user32'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.c:4:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for type: int32_t Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.types/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/config.types/conftest.c: In function ?main?: /tmp/petsc-W4It8W/config.types/conftest.c:13:9: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:6:7: warning: unused variable ?u? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:8:5: warning: unused variable ?a? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:3:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:3:21: fatal error: Windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/home/tisaac/Projects/petsc"" Defined make macro "wPETSC_DIR" to "/home/tisaac/Projects/petsc" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:944) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:944) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Linux ================================================================================ TEST configureDefaultArch from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:960) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:960) ================================================================================ TEST configureScript from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:977) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:977) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:1014) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:1014) Setup the directories for installation Defined make rule "shared_install" with dependencies "" and code ['- at echo "Now to check if the libraries are working do:"', '- at echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test"', '- at echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:1026) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:1026) ================================================================================ TEST configureFortranFlush from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:1031) TESTING: configureFortranFlush from PETSc.Configure(config/PETSc/Configure.py:1031) Checking for functions [flush_] in library [''] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush_(); static void _check_flush_() { flush_(); } int main() { _check_flush_();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_flush_': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `flush_' collect2: ld returned 1 exit status Popping language C Checking for functions [flush__] in library [''] ['-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-L/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lmpifort', '-lgfortran', '-lm', '-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lquadmath', '-lm'] Pushing language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/config.libraries/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush__(); static void _check_flush__() { flush__(); } int main() { _check_flush__();; return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/config.libraries/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lquadmath -lm -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-W4It8W/config.libraries/conftest.o: In function `_check_flush__': /tmp/petsc-W4It8W/config.libraries/conftest.c:5: undefined reference to `flush__' collect2: ld returned 1 exit status Popping language C ================================================================================ TEST configureAtoll from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:707) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:707) Checks if atoll exists Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c: In function ?main?: /tmp/petsc-W4It8W/PETSc.Configure/conftest.c:7:6: warning: unused variable ?v? [-Wunused-variable] Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o /tmp/petsc-W4It8W/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl Defined "HAVE_ATOLL" to "1" ================================================================================ TEST configureViewFromOptions from PETSc.Configure(/home/tisaac/Projects/petsc/config/PETSc/Configure.py:1038) TESTING: configureViewFromOptions from PETSc.Configure(config/PETSc/Configure.py:1038) Defined make rule "remote" with dependencies "" and code [] Defined make rule "remoteclean" with dependencies "" and code [] Pushing language C Defined make macro "CC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 " Popping language C Pushing language Cxx Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g " Popping language Cxx Defined make macro "CPP_FLAGS" to "" Pushing language C Defined make macro "PCC" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc" Defined make macro "PCC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3" Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -V Defined make macro "FC_LINKER" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90" Defined make macro "FC_LINKER_FLAGS" to " -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g " Popping language FC Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Pushing language C Defined make macro "SL_LINKER" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Popping language C Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Executing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -c -o /tmp/petsc-W4It8W/PETSc.Configure/conftest.o -I/tmp/petsc-W4It8W/config.utilities.closure -I/tmp/petsc-W4It8W/config.headers -I/tmp/petsc-W4It8W/config.utilities.cacheDetails -I/tmp/petsc-W4It8W/config.atomics -I/tmp/petsc-W4It8W/config.functions -I/tmp/petsc-W4It8W/config.utilities.featureTestMacros -I/tmp/petsc-W4It8W/config.utilities.missing -I/tmp/petsc-W4It8W/PETSc.options.scalarTypes -I/tmp/petsc-W4It8W/config.compilers -I/tmp/petsc-W4It8W/config.packages.MPI -I/tmp/petsc-W4It8W/config.packages.valgrind -I/tmp/petsc-W4It8W/config.packages.pthread -I/tmp/petsc-W4It8W/config.setCompilers -I/tmp/petsc-W4It8W/config.packages.BlasLapack -I/tmp/petsc-W4It8W/config.types -I/tmp/petsc-W4It8W/config.libraries -I/tmp/petsc-W4It8W/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 /tmp/petsc-W4It8W/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-llapack -lblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-lX11" Defined make macro "X_INCLUDE" to "" Defined "HAVE_SSL" to "1" Defined make macro "SSL_LIB" to "-lssl -lcrypto" Defined make macro "SSL_INCLUDE" to "" Defined "HAVE_SAWS" to "1" Defined make macro "SAWS_LIB" to "-Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs" Defined make macro "SAWS_INCLUDE" to "-I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined "HAVE_VALGRIND" to "1" Defined make macro "VALGRIND_LIB" to "" Defined make macro "VALGRIND_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "-lpthread" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include" Defined "HAVE_MPICH" to "1" Defined make macro "MPICH_LIB" to "" Defined make macro "MPICH_INCLUDE" to "" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lpetsc -llapack -lblas -lX11 -lssl -lcrypto -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl " Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-llapack -lblas -lX11 -lssl -lcrypto -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl " Defined make macro "PETSC_CC_INCLUDES" to "-I/home/tisaac/Projects/petsc/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include" Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "PETSC_FC_INCLUDES" to "-I/home/tisaac/Projects/petsc/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include" Defined make macro "DESTDIR" to "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich" Defined "LIB_DIR" to ""/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--download-saws --download-mpich PETSC_ARCH=arch-linux2-c-debug-mpich" Pushing language C Popping language C Pushing language FC Popping language FC Pushing language C Popping language C Pushing language FC Popping language FC Executing: ['/usr/bin/cmake', '--version'] stdout: cmake version 2.8.7 Pushing language C Popping language C Pushing language FC Popping language FC Pushing language Cxx Popping language Cxx Contents of initial cache file /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/initial_cache_file.cmake : SET (CMAKE_C_COMPILER /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_C_FLAGS " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 " CACHE STRING "Dummy comment" FORCE) SET (PETSC_CUDA_HOST_FLAGS ,-Wall,-Wwrite-strings,-Wno-strict-aliasing,-Wno-unknown-pragmas,-fvisibility=hidden,-g3 CACHE STRING "Dummy comment" FORCE) SET (CMAKE_Fortran_COMPILER /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_Fortran_FLAGS " -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_CXX_COMPILER /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_CXX_FLAGS " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_AR /usr/bin/ar CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_RANLIB /usr/bin/ranlib CACHE FILEPATH "Dummy comment" FORCE) Removing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/CMakeCache.txt Removing: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/CMakeFiles/2.8.7 Invoking: ['/usr/bin/cmake', '--trace', '--debug-output', '-C/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-linux2-c-debug-mpich', '/home/tisaac/Projects/petsc'] Executing: ['/usr/bin/cmake', '--trace', '--debug-output', '-C/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-linux2-c-debug-mpich', '/home/tisaac/Projects/petsc'] stdout: Running with trace output on. Running with debug output on. -- The C compiler identification is GNU Called from: [2] /usr/share/cmake-2.8/Modules/CMakeDetermineCCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Check for working C compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Check for working C compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -- works Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Detecting C compiler ABI info Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Detecting C compiler ABI info - done Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- The Fortran compiler identification is GNU Called from: [2] /usr/share/cmake-2.8/Modules/CMakeDetermineFortranCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Check for working Fortran compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Check for working Fortran compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -- works Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Detecting Fortran compiler ABI info Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Detecting Fortran compiler ABI info - done Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Checking whether /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 supports Fortran 90 Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Checking whether /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 supports Fortran 90 -- yes Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- The CXX compiler identification is GNU Called from: [2] /usr/share/cmake-2.8/Modules/CMakeDetermineCXXCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Check for working CXX compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Check for working CXX compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -- works Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Detecting CXX compiler ABI info Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Detecting CXX compiler ABI info - done Called from: [2] /usr/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /home/tisaac/Projects/petsc/CMakeLists.txt -- Configuring done -- Generating /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich -- Generating done -- Build files have been written to: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich CMake configured successfully, using as default build Defined make macro "PETSC_BUILD_USING_CMAKE" to "1" Pushing language C Popping language C Pushing language FC Popping language FC ================================================================================ **** arch-linux2-c-debug-mpich/lib/petsc/conf/petscvariables **** MPICXX_SHOW = g++ -g -fPIC -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpicxx -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi C_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D MPICC_SHOW = gcc -fPIC -g3 -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP FC_DEPFLAGS = -MMD -MP MPIFC_SHOW = gfortran -fPIC -ffree-line-length-0 -g -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpifort -Wl,-rpath -Wl,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,--enable-new-dtags -lmpi FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -J PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc PETSC_BUILD_USING_CMAKE = 1 CC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 SOWING_LIB = PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc SAWS_INCLUDE = -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include FC_FLAGS = -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g BLASLAPACK_LIB = -llapack -lblas PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} VALGRIND_INCLUDE = MPI_LIB = SSL_LIB = -lssl -lcrypto PETSC_EXTERNAL_LIB_BASIC = -llapack -lblas -lX11 -lssl -lcrypto -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} CC_SUFFIX = o PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} SHLIBS = libpetsc CONFIGURE_OPTIONS = --download-saws --download-mpich PETSC_ARCH=arch-linux2-c-debug-mpich PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PTHREAD_LIB = -lpthread PETSC_SCALAR = real SAWS_LIB = -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs CPP_FLAGS = PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = FC_LINKER = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 MPICH_INCLUDE = PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g PCC_LINKER_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 SSL_INCLUDE = PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES = -I/home/tisaac/Projects/petsc/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include MPICH_LIB = PCC_LINKER = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 VALGRIND_LIB = PTHREAD_INCLUDE = PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_FC_INCLUDES = -I/home/tisaac/Projects/petsc/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include PETSC_TAO_LIB_BASIC = -lpetsc BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = so PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} DESTDIR = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich FC_MODULE_FLAG = -I X_LIB = -lX11 wPETSC_DIR = /home/tisaac/Projects/petsc X_INCLUDE = PETSC_WITH_EXTERNAL_LIB = -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lpetsc -llapack -lblas -lX11 -lssl -lcrypto -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl SOWING_INCLUDE = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include FC_SUFFIX = o PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} SHELL = /bin/sh GREP = /bin/grep MV = /bin/mv PYTHON = /usr/bin/python MKDIR = /bin/mkdir -p SEDINPLACE = /bin/sed -i SED = /bin/sed DIFF = /usr/bin/diff -w GZIP = /bin/gzip RM = /bin/rm -f CP = /bin/cp CC_LINKER_SLFLAG = -Wl,-rpath, CC = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc CXX = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx FC = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 CXXCPP = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -E FC_LINKER_SLFLAG = -Wl,-rpath, CPP = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -E AR_LIB_SUFFIX = a LD_SHARED = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc AR = /usr/bin/ar DIR = /home/tisaac/Projects/petsc PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 MAKE_IS_GNUMAKE = 1 MAKE_NP = 4 NPMAX = 4 OMAKE_PRINTDIR = /usr/bin/make --print-directory MAKE = /usr/bin/make MAKE_PAR_OUT_FLG = OMAKE = /usr/bin/make --no-print-directory GIT = git HG = hg SL_LINKER_FUNCTION = -shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) SONAME_FUNCTION = $(1).so.$(2) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true MPIEXEC = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpiexec CMAKE = /usr/bin/cmake CTEST = /usr/bin/ctest DATAFILESPATH = /home/tisaac/datafiles DOCTEXT = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/doctext BIB2HTML = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bib2html PDFLATEX = /usr/local/texlive/2015/bin/x86_64-linux/pdflatex BFORT = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/bfort MAPNAMES = /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mapnames TEST_RUNS = C C_Info C_NotSingle C_X Fortran Fortran_NotSingle F90_NotSingle Fortran_NoComplex_NotSingle C_NoComplex_NotSingle Cxx F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex DATAFILESPATH Cxx_DATAFILESPATH Fortran_DATAFILESPATH DOUBLEINT32 Fortran_DOUBLEINT32 **** arch-linux2-c-debug-mpich/lib/petsc/conf/petscrules **** shared_install: - at echo "Now to check if the libraries are working do:" - at echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test" - at echo "=========================================" remoteclean: remote: libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_linux .F.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.o .f90.o .f95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $< .f.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o .F95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $< mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: **** arch-linux2-c-debug-mpich/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_UINTPTR_T #define PETSC_UINTPTR_T uintptr_t #endif #ifndef PETSC_HAVE_PTHREAD #define PETSC_HAVE_PTHREAD 1 #endif #ifndef PETSC_HAVE_SSL #define PETSC_HAVE_SSL 1 #endif #ifndef PETSC_DEPRECATED #define PETSC_DEPRECATED(why) __attribute((deprecated)) #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_SO_REUSEADDR #define PETSC_HAVE_SO_REUSEADDR 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_PREFETCH_HINT_T2 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #endif #ifndef PETSC_PREFETCH_HINT_T0 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #endif #ifndef PETSC_PREFETCH_HINT_T1 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_DIR #define PETSC_DIR "/home/tisaac/Projects/petsc" #endif #ifndef PETSC_HAVE_X #define PETSC_HAVE_X 1 #endif #ifndef PETSC_LIB_DIR #define PETSC_LIB_DIR "/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib" #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_USE_ISATTY #define PETSC_USE_ISATTY 1 #endif #ifndef PETSC_HAVE_SOWING #define PETSC_HAVE_SOWING 1 #endif #ifndef PETSC_SLSUFFIX #define PETSC_SLSUFFIX "so" #endif #ifndef PETSC_FUNCTION_NAME_CXX #define PETSC_FUNCTION_NAME_CXX __func__ #endif #ifndef PETSC_HAVE_ATOLL #define PETSC_HAVE_ATOLL 1 #endif #ifndef PETSC_HAVE_ATTRIBUTEALIGNED #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_UNUSED #define PETSC_UNUSED __attribute((unused)) #endif #ifndef PETSC_ATTRIBUTEALIGNED #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned (size))) #endif #ifndef PETSC_FUNCTION_NAME_C #define PETSC_FUNCTION_NAME_C __func__ #endif #ifndef PETSC_HAVE_MPICH #define PETSC_HAVE_MPICH 1 #endif #ifndef PETSC_HAVE_VALGRIND #define PETSC_HAVE_VALGRIND 1 #endif #ifndef PETSC_USE_SINGLE_LIBRARY #define PETSC_USE_SINGLE_LIBRARY 1 #endif #ifndef PETSC_HAVE_BUILTIN_EXPECT #define PETSC_HAVE_BUILTIN_EXPECT 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC_HAVE_SAWS #define PETSC_HAVE_SAWS 1 #endif #ifndef PETSC_HAVE_XMMINTRIN_H #define PETSC_HAVE_XMMINTRIN_H 1 #endif #ifndef PETSC_PREFETCH_HINT_NTA #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #endif #ifndef PETSC_Prefetch #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_INTTYPES_H #define PETSC_HAVE_INTTYPES_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_USING_F90FREEFORM #define PETSC_USING_F90FREEFORM 1 #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBBLAS #define PETSC_HAVE_LIBBLAS 1 #endif #ifndef PETSC_HAVE_LIBZ #define PETSC_HAVE_LIBZ 1 #endif #ifndef PETSC_HAVE_LIBMPIFORT #define PETSC_HAVE_LIBMPIFORT 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBX11 #define PETSC_HAVE_LIBX11 1 #endif #ifndef PETSC_HAVE_LIBPTHREAD #define PETSC_HAVE_LIBPTHREAD 1 #endif #ifndef PETSC_HAVE_LIBLAPACK #define PETSC_HAVE_LIBLAPACK 1 #endif #ifndef PETSC_HAVE_LIBCRYPTO #define PETSC_HAVE_LIBCRYPTO 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LOG2 #define PETSC_HAVE_LOG2 1 #endif #ifndef PETSC_HAVE_LIBSAWS #define PETSC_HAVE_LIBSAWS 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBSSL #define PETSC_HAVE_LIBSSL 1 #endif #ifndef PETSC_HAVE_LIBQUADMATH #define PETSC_HAVE_LIBQUADMATH 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_HAVE_LIBRT #define PETSC_HAVE_LIBRT 1 #endif #ifndef PETSC_HAVE_LIBGFORTRAN #define PETSC_HAVE_LIBGFORTRAN 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-linux2-c-debug-mpich" #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_USE_VISIBILITY_C #define PETSC_USE_VISIBILITY_C 1 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_USE_VISIBILITY_CXX #define PETSC_USE_VISIBILITY_CXX 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2016-11-10 08:59:24 -0600" #endif #ifndef PETSC_VERSION_BRANCH_GIT #define PETSC_VERSION_BRANCH_GIT "master" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "v3.7.4-1922-geb30558" #endif #ifndef PETSC_BLASLAPACK_UNDERSCORE #define PETSC_BLASLAPACK_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_IALLREDUCE #define PETSC_HAVE_MPI_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_CONTIGUOUS #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #endif #ifndef PETSC_HAVE_MPI_INT64_T #define PETSC_HAVE_MPI_INT64_T 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_NAMED #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPICH_CH3_SOCK #define PETSC_HAVE_MPICH_CH3_SOCK 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPICH_NUMVERSION #define PETSC_HAVE_MPICH_NUMVERSION 30103300 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_IBARRIER #define PETSC_HAVE_MPI_IBARRIER 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_LOCAL #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_F #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_FORTRAN_INTERFACES #define PETSC_USE_FORTRAN_INTERFACES 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC__DEFAULT_SOURCE #define PETSC__DEFAULT_SOURCE 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #ifndef PETSC_HAVE_SCHED_CPU_SET_T #define PETSC_HAVE_SCHED_CPU_SET_T 1 #endif #ifndef PETSC_HAVE_PTHREAD_BARRIER_T #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** arch-linux2-c-debug-mpich/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- Framework: Directory creation : Created the external packages directory: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header arch-linux2-c-debug-mpich/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-linux2-c-debug-mpich/lib/petsc/conf/petscrules File creation : Created configure header arch-linux2-c-debug-mpich/include/petscconf.h File creation : Created C specific configure header arch-linux2-c-debug-mpich/include/petscfix.h MPICH: Download : Downloaded MPICH into /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/mpich-3.1.3 Install : Installed MPICH into /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich SOWING: Download : Downloaded SOWING into /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.sowing Install : Installed SOWING into /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-linux2-c-debug-mpich in lib/petsc/conf/petscvariables File creation : Created arch-linux2-c-debug-mpich/lib/petsc/conf/reconfigure-arch-linux2-c-debug-mpich.py for automatic reconfiguration SAWS: Download : Downloaded SAWS into /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/externalpackages/git.saws Install : Installed SAWS into /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Compilers: C Compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 C++ Compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g Fortran Compiler: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpif90 -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -Wno-unused-variable -g Linkers: Shared linker: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -shared -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 Dynamic linker: /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -shared -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 make: BLAS/LAPACK: -llapack -lblas MPI: Includes: -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include MPICH: cmake: Arch: X: Library: -lX11 ssl: Library: -lssl -lcrypto saws: Includes: -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include Library: -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs sowing: valgrind: pthread: Library: -lpthread PETSc: PETSC_ARCH: arch-linux2-c-debug-mpich PETSC_DIR: /home/tisaac/Projects/petsc Scalar type: real Precision: double Clanguage: C Integer size: 32 shared libraries: enabled Memory alignment: 16 xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with (gnumake build): make PETSC_DIR=/home/tisaac/Projects/petsc PETSC_ARCH=arch-linux2-c-debug-mpich all xxx=========================================================================xxx ================================================================================ Finishing Configure Run at Thu Nov 10 14:02:09 2016 ================================================================================ -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 490 bytes Desc: Digital signature URL: From bsmith at mcs.anl.gov Thu Nov 10 17:49:47 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 10 Nov 2016 17:49:47 -0600 Subject: [petsc-users] SAWs does not work in parallel on my laptop In-Reply-To: <20161110202137.GA18872@uchicago.edu> References: <20161110202137.GA18872@uchicago.edu> Message-ID: -saws_options doesn't work in parallel. Doing this right is really hard because different options may be checked on different communicators -ts_monitor_saws -snes_monitor_saws etc work in parallel but probably only if the communicator is over all processes -stack_view works in parallel but only shows the stack on process 0. The SAWs browser only communicates with process 0 and SAWs itself does not do any MPI in the application code. > On Nov 10, 2016, at 2:21 PM, Tobin Isaac wrote: > > > I tried running the first example with SAWs, and it works with one > process, but not in parallel. This is a minimal install using the > downloaded mpich version. Any suggestions? > > /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -o ex1.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -I/home/tisaac/Projects/petsc/include -I/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/include `pwd`/ex1.c > /home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g3 -o ex1 ex1.o -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lpetsc -llapack -lblas -lX11 -lssl -lcrypto -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lSAWs -lpthread -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -L/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/tisaac/Projects/petsc/arch-linux2-c-debug-mpich/lib -lmpi -lgcc_s -ldl > /bin/rm -f -f ex1.o > [0] PetscGetHostName(): Rejecting domainname, likely is NIS alembic.(none) > [0] PetscGetFileStat(): System call stat() succeeded on file /home/tisaac/Projects/petsc/share/petsc/saws/js > [0] PetscTestOwnership(): System call access() succeeded on file /home/tisaac/Projects/petsc/share/petsc/saws/js > [0] PetscInitialize(): PETSc successfully started: number of processors = 2 > [0] PetscGetHostName(): Rejecting domainname, likely is NIS alembic.(none) > [0] PetscInitialize(): Running on machine: alembic > [1]PETSC ERROR: #1 PetscLogInitialize() line 229 in /home/tisaac/Projects/petsc/src/sys/logging/plog.c > [1]PETSC ERROR: #2 PetscInitialize() line 891 in /home/tisaac/Projects/petsc/src/sys/objects/pinit.c > [0] PetscSAWsBlock(): Blocking on SAWs > > =================================================================================== > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > = PID 21665 RUNNING AT alembic > = EXIT CODE: 14 > = CLEANING UP REMAINING PROCESSES > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > =================================================================================== > From quanwang.us at gmail.com Fri Nov 11 10:21:09 2016 From: quanwang.us at gmail.com (Wang) Date: Fri, 11 Nov 2016 11:21:09 -0500 Subject: [petsc-users] dumb questions about orientations of entities in dmplex Message-ID: Hello, I'm new user of PETSc. I'm a little confused of the orientations of those meshing entities in DM. Here are my questions. 1. When creating DM from a given mesh, such as DMPlexCreateGmshFromFile, will the ordering of nodes for each element be changed? If so, even for mesh which has been oriented (for example, in 2D mesh, the natural order is already clockwise-oriented)? 2. What do those orientations of points in closure of one cell mean? Why do we use those positive or negative integers, like s or -(s+1)? Isn't a bool flag enough? let's look at one example, closure (given by DMPlexGetTransitiveClosure) of a 2D cell { f1, o1, e4, o2, e3,o3, e5,o4, v1,o5, v8,o6, v9,o7} where f, e or v denotes face, edge or vertex respectively. If the cone of each point in that list is uniquely defined as given by DMPlexGetCone, then, with my understanding, the possible orientation for each point in that closure is either 1 or -1. What does it mean by having orientation equal to 0, s or -(s+1), respectively, for certain point in the list, such as edge e4? My question is why we need a start in the orientation of a sieve point if it is already defined. 3. No matter what the answer to question 1 is, I'm assuming DMPlexDistribute only renumbers things without changing the orientation. Am I correct? Thanks in advance. Wang -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Sat Nov 12 09:18:09 2016 From: knepley at gmail.com (Matthew Knepley) Date: Sat, 12 Nov 2016 09:18:09 -0600 Subject: [petsc-users] dumb questions about orientations of entities in dmplex In-Reply-To: References: Message-ID: On Fri, Nov 11, 2016 at 10:21 AM, Wang wrote: > Hello, I'm new user of PETSc. I'm a little confused of the orientations of > those meshing entities in DM. Here are my questions. > > 1. When creating DM from a given mesh, such as DMPlexCreateGmshFromFile, > will the ordering of nodes for each element be changed? If so, even for > mesh which has been oriented (for example, in 2D mesh, the natural order is > already clockwise-oriented)? > I change the ordering from mesh formats to the canonical library ordering. In 2D this is unambiguous (the right hand rule, or counter-clockwise). In 3D, for simplices we order them so that the first 3 vertices give an outward normal. For hexes, we order them so that the first four and last four give an outward normal. > 2. What do those orientations of points in closure of one cell mean? Why > do we use those positive or negative integers, like s or -(s+1)? Isn't a > bool flag enough? > The orientation of a point, relative to the point it covers, picks out the element of the symmetric group on that point to apply, or said another way it picks the permutation to use when returning the result. These groups of permutations can usually be decomposed into rotations and reflections, so we use the minus sign to indicate a reflection as well. If you used a boolean, that could only encode flipping, which is good enough for edges, but not say for quad faces. > let's look at one example, closure (given by DMPlexGetTransitiveClosure) > of a 2D cell { f1, o1, e4, o2, e3,o3, e5,o4, v1,o5, v8,o6, v9,o7} where f, > e or v denotes face, edge or vertex respectively. > > If the cone of each point in that list is uniquely defined as given > by DMPlexGetCone, then, with my understanding, the possible orientation for > each point in that closure is either 1 or -1. > Precisely, o1 does not matter since the face does not cover anything. o5, o6, and o7 do not matter because vertices have no symmetry group. o2, o3, and o4 have the symmetry group of the interval, which only has two members. Our number double counts here: 0: Start at vertex 0 and go forward, {0, 1} 1: Start at vertex 1 and go forward, {1, 0} since we wrap around -1: Start at vertex 0 and go backward, {0, 1} since we wrap around -2: Start at vertex 1 and go backward, {1, 0} I do not use the wrap around ordering numbers for edges since its confusing. Note that for a face, they would be meaningful. > What does it mean by having orientation equal to 0, s or -(s+1), > respectively, for certain point in the list, such as edge e4? My question > is why we need a start in the orientation of a sieve point if it is > already defined. > Shown above. > 3. No matter what the answer to question 1 is, I'm > assuming DMPlexDistribute only renumbers things without changing the > orientation. Am I correct? > Yes. Matt > Thanks in advance. > > Wang > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From aks084000 at utdallas.edu Sun Nov 13 23:36:45 2016 From: aks084000 at utdallas.edu (Safin, Artur) Date: Mon, 14 Nov 2016 05:36:45 +0000 Subject: [petsc-users] Shell preconditioner within a fieldsplit Message-ID: <2b3b76aa63234ba3b6378c207f4df51a@utdallas.edu> Hello, What is the proper way to set up a shell preconditioner within a fielsplit? I have tried it on my own, but do not get the proper behavior. The relevant portion looks like this: __________________________________________________________________ // Global System KSPSetOperators(ksp, A, A); // Skipped code.. // Shell Preconditioner for the pressure sub-block KSP *subksp; PCFieldSplitGetSubKSP(pc, NULL, &subksp); Mat pressureA; KSPSetType(subksp[0], "preonly"); MatCreateShell(MPI_COMM_WORLD, n_local_P_dofs, n_local_P_dofs, , PETSC_DETERMINE, PETSC_DETERMINE, &pressureA); MatShellSetOperation(pressureA, MATOP_MULT, (void(*)(void)) PressureBlock); KSPSetOperators(subksp[0], pressureA, pressureA); // Skipped code.. KSPSetUp(ksp); KSPSolve(ksp, b, x); __________________________________________________________________ The fieldsplit component works fine; the solver however does not go into the custom function PressureBlock(), so I am curious as to what the correct approach is. Best, Artur -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Mon Nov 14 00:02:18 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 14 Nov 2016 00:02:18 -0600 Subject: [petsc-users] Shell preconditioner within a fieldsplit In-Reply-To: <2b3b76aa63234ba3b6378c207f4df51a@utdallas.edu> References: <2b3b76aa63234ba3b6378c207f4df51a@utdallas.edu> Message-ID: <95A31C90-7BD2-43CA-90B9-33ED83F741A3@mcs.anl.gov> From the manual page for PCFieldSplitGetSubKSP() You must call KSPSetUp() before calling PCFieldSplitGetSubKSP(). Please try this and let us know if it still doesn't call your PressureBlock(). PETSc developers: we should figure out how to have it generate a very useful error message if the PCFieldSplitGetSubKSP() is called prematurely, currently it sets ierr = PetscObjectComposeFunction((PetscObject)pc,"PCFieldSplitGetSubKSP_C",PCFieldSplitGetSubKSP_FieldSplit);CHKERRQ(ierr); in PCCreate_FieldSplit() which is premature and will lead to errors. Presumably we should not set this composition until the setup is called? Barry > On Nov 13, 2016, at 11:36 PM, Safin, Artur wrote: > > Hello, > > What is the proper way to set up a shell preconditioner within a fielsplit? I have tried it on my own, but do not get the proper behavior. The relevant portion looks like this: > > __________________________________________________________________ > // Global System > KSPSetOperators(ksp, A, A); > > // Skipped code.. > > > // Shell Preconditioner for the pressure sub-block > KSP *subksp; > PCFieldSplitGetSubKSP(pc, NULL, &subksp); > > Mat pressureA; > KSPSetType(subksp[0], "preonly"); > MatCreateShell(MPI_COMM_WORLD, n_local_P_dofs, n_local_P_dofs, , PETSC_DETERMINE, PETSC_DETERMINE, &pressureA); > MatShellSetOperation(pressureA, MATOP_MULT, (void(*)(void)) PressureBlock); > KSPSetOperators(subksp[0], pressureA, pressureA); > > // Skipped code.. > > > KSPSetUp(ksp); > KSPSolve(ksp, b, x); > __________________________________________________________________ > > The fieldsplit component works fine; the solver however does not go into the custom function PressureBlock(), so I am curious as to what the correct approach is. > > Best, > > Artur From dave.mayhem23 at gmail.com Mon Nov 14 00:04:08 2016 From: dave.mayhem23 at gmail.com (Dave May) Date: Mon, 14 Nov 2016 06:04:08 +0000 Subject: [petsc-users] Shell preconditioner within a fieldsplit In-Reply-To: <2b3b76aa63234ba3b6378c207f4df51a@utdallas.edu> References: <2b3b76aa63234ba3b6378c207f4df51a@utdallas.edu> Message-ID: Looks like you want the contents of your mat shell, specifically the op Ax, to define the action of the preconditioner. You need to either create a PCShell (rather than a MatShell), and define the operation called by PCApply(), or keep you current shell but change "preonly" to "mat". http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/PC/PCMAT.html#PCMAT Thanks Dave On Mon, 14 Nov 2016 at 06:36, Safin, Artur wrote: > Hello, > > > What is the proper way to set up a shell preconditioner within a > fielsplit? I have tried it on my own, but do not get the proper > behavior. The relevant portion looks like this: > > > __________________________________________________________________ > > // Global System > KSPSetOperators(ksp, A, A); > > // Skipped code.. > > > > // Shell Preconditioner for the pressure sub-block > > KSP *subksp; > > PCFieldSplitGetSubKSP(pc, NULL, &subksp); > > Mat pressureA; > KSPSetType(subksp[0], "preonly"); > MatCreateShell(MPI_COMM_WORLD, n_local_P_dofs, n_local_P_dofs, , > PETSC_DETERMINE, PETSC_DETERMINE, &pressureA); > MatShellSetOperation(pressureA, MATOP_MULT, (void(*)(void)) > PressureBlock); > KSPSetOperators(subksp[0], pressureA, pressureA); > > // Skipped code.. > > > KSPSetUp(ksp); > > KSPSolve(ksp, b, x); > > __________________________________________________________________ > > > The fieldsplit component works fine; the solver however does not go into > the custom function PressureBlock(), so I am curious as to what the correct > approach is. > > > Best, > > > Artur > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dave.mayhem23 at gmail.com Mon Nov 14 01:20:47 2016 From: dave.mayhem23 at gmail.com (Dave May) Date: Mon, 14 Nov 2016 07:20:47 +0000 Subject: [petsc-users] Shell preconditioner within a fieldsplit In-Reply-To: References: <2b3b76aa63234ba3b6378c207f4df51a@utdallas.edu> Message-ID: Damn - the last part of my email is wrong. You want to set the PCType to "mat". KSPType preonly is fine On Mon, 14 Nov 2016 at 07:04, Dave May wrote: > Looks like you want the contents of your mat shell, specifically the op > Ax, to define the action of the preconditioner. > > You need to either create a PCShell (rather than a MatShell), and define > the operation called by PCApply(), or keep you current shell but change > "preonly" to "mat". > > > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/PC/PCMAT.html#PCMAT > > Thanks > Dave > > On Mon, 14 Nov 2016 at 06:36, Safin, Artur wrote: > > Hello, > > > What is the proper way to set up a shell preconditioner within a > fielsplit? I have tried it on my own, but do not get the proper > behavior. The relevant portion looks like this: > > > __________________________________________________________________ > > // Global System > KSPSetOperators(ksp, A, A); > > // Skipped code.. > > > > // Shell Preconditioner for the pressure sub-block > > KSP *subksp; > > PCFieldSplitGetSubKSP(pc, NULL, &subksp); > > Mat pressureA; > KSPSetType(subksp[0], "preonly"); > MatCreateShell(MPI_COMM_WORLD, n_local_P_dofs, n_local_P_dofs, , > PETSC_DETERMINE, PETSC_DETERMINE, &pressureA); > MatShellSetOperation(pressureA, MATOP_MULT, (void(*)(void)) > PressureBlock); > KSPSetOperators(subksp[0], pressureA, pressureA); > > // Skipped code.. > > > KSPSetUp(ksp); > > KSPSolve(ksp, b, x); > > __________________________________________________________________ > > > The fieldsplit component works fine; the solver however does not go into > the custom function PressureBlock(), so I am curious as to what the correct > approach is. > > > Best, > > > Artur > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From juan at tf.uni-kiel.de Mon Nov 14 03:24:43 2016 From: juan at tf.uni-kiel.de (Julian Andrej) Date: Mon, 14 Nov 2016 10:24:43 +0100 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: <87inrve44u.fsf@jedbrown.org> Message-ID: I think i'm understanding the concept now. Although i have another set of questions. If i am formulating a DAE (like in the linear stokes equation for example) it seems i am missing something to formulate the correct jacobian. The residual formulation with snes_mf or snes_fd works fine in terms of nonlinear convergence. If i use the hand coded jacobian the convergence is way slower, which is a reason for an incorrect jacobian formulation from my side (at least what i think right now). I should be able to test my jacobian with -snes_type test, even if i am using TS, right? This gives me a huge difference. I guess i am missing something in the formulation and thus in the implementation of the callbacks here. There is a small example attached. I appreciate your time and help. On Thu, Nov 10, 2016 at 4:45 PM, Matthew Knepley wrote: > On Thu, Nov 10, 2016 at 9:38 AM, Jed Brown wrote: >> >> Matthew Knepley writes: >> >> > On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej >> > wrote: >> > >> >> I'm getting the correct solution now, thanks! There are still a few >> >> open questions. >> >> >> >> 1. The mass term is necessary _and_ using the u_tShift value if i >> >> provide the jacobian. After reading the manual countless times, i >> >> still don't get what the u_tShift value tells me in this context. Are >> >> there any resources which you could point me to? >> >> >> > >> > The manual is always a lagging resource because we are trying things >> > out. >> >> This has been explained in the manual similarly to your email for >> several years. If anyone has a suggestion for how to make it better, >> we'd like to hear. The typical syndrome is that once you learn it, the >> description suddenly makes sense and you wonder why you were ever >> confused. It takes feedback from people just learning the material to >> make the explanation more clear. >> >> > I learned about this by reading examples. The idea is the >> > following. We have an implicit definition of our timestepping method >> > >> > F(u, grad u, u_t, x, t) = 0 >> >> It doesn't make sense to write grad u as a separate argument here. > > > Sorry, that is just how I think of it, not the actual interface. > >> >> Also, is `x` meant to be coordinates or some other statically prescribed > > > Coordinates, as distinct from u. Again this is my fault. > >> >> data? It can't be actively changing if you expect a generic TS to be >> convergent. (It's not an argument to the function.) So really, you >> have: >> >> F(u, u_t, t) = 0 >> >> > which is not unlike a Lagrangian description of a mechanical system. The >> > Jacobian can be considered >> > formally to have two parts, >> > >> > dF/du and dF/du_t >> > >> > just as in the Lagrangian setting. The u_tShift variable is the >> > multiplier >> > for dF/du_t so that you actually >> > form >> > >> > dF/du + u_tShift dF/du_t >> >> We're taking the total derivative of F with respect to u where u_t has >> been _defined_ as an affine function of u, i.e., shift*u+affine. >> u_tShift comes from the chain rule. When computing the total >> derivative, we have >> >> dF/du + dF/du_t du_t/du. >> >> >> >> 2. Is DMProjectFunction necessary _before_ TSSolve? This acts like an >> >> initial condition if i'm not mistaken. >> >> >> > >> > Yes, this is the initial condition. >> > >> > >> >> 3. A more in depth question i guess. Where is the "mass action" >> >> formed? As i could see by stepping through the debugger, there is just >> >> a formed action for the residual equation. It seems way over my >> >> understanding how this formulation works out. I'd also appreciate >> >> resources on that if thats possible. >> >> >> > >> > Jed is the only one who understands this completely. >> >> That's a stretch -- several other people have developed sophisticated TS >> implementations. > > > Matt does not understand this completely. > >> >> >> > However, I guess by "mass action" you mean the dF/du_t term. In the >> > explicit methods, you just have u_t + ..., so >> > >> > dF/du_t = M >> > >> > for finite element methods. So you are putting that there in >> > FormIJacobian(). In the simplest >> > case of backwards Euler then u_tShift would be 1/dt. >> >> Specifically, for implicit methods, and many semi-implicit methods, we >> don't need M separate. > > > Yes. > > Matt > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener -------------- next part -------------- A non-text attachment was scrubbed... Name: fluid.c Type: text/x-csrc Size: 11150 bytes Desc: not available URL: From knepley at gmail.com Mon Nov 14 07:01:09 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 14 Nov 2016 07:01:09 -0600 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: <87inrve44u.fsf@jedbrown.org> Message-ID: On Mon, Nov 14, 2016 at 3:24 AM, Julian Andrej wrote: > I think i'm understanding the concept now. Although i have another set > of questions. If i am formulating a DAE (like in the linear stokes > equation for example) it seems i am missing something to formulate the > correct jacobian. The residual formulation with snes_mf or snes_fd > works fine in terms of nonlinear convergence. If i use the hand coded > jacobian the convergence is way slower, which is a reason for an > incorrect jacobian formulation from my side (at least what i think > right now). I should be able to test my jacobian with -snes_type test, > even if i am using TS, right? This gives me a huge difference. I guess > i am missing something in the formulation and thus in the > implementation of the callbacks here. > > There is a small example attached. > I will look at it. It would be really helpful for me if you would include the options you run with, and perhaps a little output with the report. Thanks, Matt > I appreciate your time and help. > > On Thu, Nov 10, 2016 at 4:45 PM, Matthew Knepley > wrote: > > On Thu, Nov 10, 2016 at 9:38 AM, Jed Brown wrote: > >> > >> Matthew Knepley writes: > >> > >> > On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej > >> > wrote: > >> > > >> >> I'm getting the correct solution now, thanks! There are still a few > >> >> open questions. > >> >> > >> >> 1. The mass term is necessary _and_ using the u_tShift value if i > >> >> provide the jacobian. After reading the manual countless times, i > >> >> still don't get what the u_tShift value tells me in this context. Are > >> >> there any resources which you could point me to? > >> >> > >> > > >> > The manual is always a lagging resource because we are trying things > >> > out. > >> > >> This has been explained in the manual similarly to your email for > >> several years. If anyone has a suggestion for how to make it better, > >> we'd like to hear. The typical syndrome is that once you learn it, the > >> description suddenly makes sense and you wonder why you were ever > >> confused. It takes feedback from people just learning the material to > >> make the explanation more clear. > >> > >> > I learned about this by reading examples. The idea is the > >> > following. We have an implicit definition of our timestepping method > >> > > >> > F(u, grad u, u_t, x, t) = 0 > >> > >> It doesn't make sense to write grad u as a separate argument here. > > > > > > Sorry, that is just how I think of it, not the actual interface. > > > >> > >> Also, is `x` meant to be coordinates or some other statically prescribed > > > > > > Coordinates, as distinct from u. Again this is my fault. > > > >> > >> data? It can't be actively changing if you expect a generic TS to be > >> convergent. (It's not an argument to the function.) So really, you > >> have: > >> > >> F(u, u_t, t) = 0 > >> > >> > which is not unlike a Lagrangian description of a mechanical system. > The > >> > Jacobian can be considered > >> > formally to have two parts, > >> > > >> > dF/du and dF/du_t > >> > > >> > just as in the Lagrangian setting. The u_tShift variable is the > >> > multiplier > >> > for dF/du_t so that you actually > >> > form > >> > > >> > dF/du + u_tShift dF/du_t > >> > >> We're taking the total derivative of F with respect to u where u_t has > >> been _defined_ as an affine function of u, i.e., shift*u+affine. > >> u_tShift comes from the chain rule. When computing the total > >> derivative, we have > >> > >> dF/du + dF/du_t du_t/du. > >> > >> > >> >> 2. Is DMProjectFunction necessary _before_ TSSolve? This acts like an > >> >> initial condition if i'm not mistaken. > >> >> > >> > > >> > Yes, this is the initial condition. > >> > > >> > > >> >> 3. A more in depth question i guess. Where is the "mass action" > >> >> formed? As i could see by stepping through the debugger, there is > just > >> >> a formed action for the residual equation. It seems way over my > >> >> understanding how this formulation works out. I'd also appreciate > >> >> resources on that if thats possible. > >> >> > >> > > >> > Jed is the only one who understands this completely. > >> > >> That's a stretch -- several other people have developed sophisticated TS > >> implementations. > > > > > > Matt does not understand this completely. > > > >> > >> > >> > However, I guess by "mass action" you mean the dF/du_t term. In the > >> > explicit methods, you just have u_t + ..., so > >> > > >> > dF/du_t = M > >> > > >> > for finite element methods. So you are putting that there in > >> > FormIJacobian(). In the simplest > >> > case of backwards Euler then u_tShift would be 1/dt. > >> > >> Specifically, for implicit methods, and many semi-implicit methods, we > >> don't need M separate. > > > > > > Yes. > > > > Matt > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From juan at tf.uni-kiel.de Mon Nov 14 07:34:03 2016 From: juan at tf.uni-kiel.de (Julian Andrej) Date: Mon, 14 Nov 2016 14:34:03 +0100 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: <87inrve44u.fsf@jedbrown.org> Message-ID: <20161114143403.700ed227@saga> Sorry, i'll make it a habit to include my runtime options ;) ./fluid -dm_refine 2 -vel_petscspace_poly_tensor -vel_petscspace_order 2 -pres_petscspace_poly_tensor -pres_petscspace_order 1 -ts_monitor -ts_max_steps 10 -ts_dt 0.01 -ts_final_time 2 -snes_monitor -ts_fd_color 0 TS dt 0.01 time 0. 0 SNES Function norm 1.843877547310e+01 1 SNES Function norm 1.284864233819e-02 2 SNES Function norm 7.195271345724e-08 1 TS dt 0.01 time 0.01 ... works fine for example. Running with my hand coded jacobian with ./fluid -dm_refine 2 -vel_petscspace_poly_tensor -vel_petscspace_order 2 -pres_petscspace_poly_tensor -pres_petscspace_order 1 -ts_monitor -ts_max_steps 10 -ts_dt 0.01 -ts_final_time 2 -snes_monitor 0 TS dt 0.01 time 0. 0 SNES Function norm 1.843877547310e+01 ... 46 SNES Function norm 2.462286148582e-07 47 SNES Function norm 1.792848027835e-07 1 TS dt 0.01 time 0.01 ... And finally running ./fluid -dm_refine 2 -vel_petscspace_poly_tensor -vel_petscspace_order 2 -pres_petscspace_poly_tensor -pres_petscspace_order 1 -ts_monitor -ts_max_steps 10 -ts_dt 0.01 -ts_final_time 2 -snes_type test ... Norm of matrix ratio 0.0203667, difference 3.06481 (user-defined state) Norm of matrix ratio 0.0203667, difference 3.06481 (constant state -1.0) Norm of matrix ratio 0.0203667, difference 3.06481 (constant state 1.0) Thanks again On Mon, 14 Nov 2016 07:01:09 -0600 Matthew Knepley wrote: > On Mon, Nov 14, 2016 at 3:24 AM, Julian Andrej > wrote: > > > I think i'm understanding the concept now. Although i have another > > set of questions. If i am formulating a DAE (like in the linear > > stokes equation for example) it seems i am missing something to > > formulate the correct jacobian. The residual formulation with > > snes_mf or snes_fd works fine in terms of nonlinear convergence. If > > i use the hand coded jacobian the convergence is way slower, which > > is a reason for an incorrect jacobian formulation from my side (at > > least what i think right now). I should be able to test my jacobian > > with -snes_type test, even if i am using TS, right? This gives me a > > huge difference. I guess i am missing something in the formulation > > and thus in the implementation of the callbacks here. > > > > There is a small example attached. > > > > I will look at it. It would be really helpful for me if you would > include the options you > run with, and perhaps a little output with the report. > > Thanks, > > Matt > > > > I appreciate your time and help. > > > > On Thu, Nov 10, 2016 at 4:45 PM, Matthew Knepley > > wrote: > > > On Thu, Nov 10, 2016 at 9:38 AM, Jed Brown > > > wrote: > > >> > > >> Matthew Knepley writes: > > >> > > >> > On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej > > >> > wrote: > > >> > > > >> >> I'm getting the correct solution now, thanks! There are still > > >> >> a few open questions. > > >> >> > > >> >> 1. The mass term is necessary _and_ using the u_tShift value > > >> >> if i provide the jacobian. After reading the manual countless > > >> >> times, i still don't get what the u_tShift value tells me in > > >> >> this context. Are there any resources which you could point > > >> >> me to? > > >> > > > >> > The manual is always a lagging resource because we are trying > > >> > things out. > > >> > > >> This has been explained in the manual similarly to your email for > > >> several years. If anyone has a suggestion for how to make it > > >> better, we'd like to hear. The typical syndrome is that once > > >> you learn it, the description suddenly makes sense and you > > >> wonder why you were ever confused. It takes feedback from > > >> people just learning the material to make the explanation more > > >> clear. > > >> > I learned about this by reading examples. The idea is the > > >> > following. We have an implicit definition of our timestepping > > >> > method > > >> > > > >> > F(u, grad u, u_t, x, t) = 0 > > >> > > >> It doesn't make sense to write grad u as a separate argument > > >> here. > > > > > > > > > Sorry, that is just how I think of it, not the actual interface. > > > > > >> > > >> Also, is `x` meant to be coordinates or some other statically > > >> prescribed > > > > > > > > > Coordinates, as distinct from u. Again this is my fault. > > > > > >> > > >> data? It can't be actively changing if you expect a generic TS > > >> to be convergent. (It's not an argument to the function.) So > > >> really, you have: > > >> > > >> F(u, u_t, t) = 0 > > >> > > >> > which is not unlike a Lagrangian description of a mechanical > > >> > system. > > The > > >> > Jacobian can be considered > > >> > formally to have two parts, > > >> > > > >> > dF/du and dF/du_t > > >> > > > >> > just as in the Lagrangian setting. The u_tShift variable is the > > >> > multiplier > > >> > for dF/du_t so that you actually > > >> > form > > >> > > > >> > dF/du + u_tShift dF/du_t > > >> > > >> We're taking the total derivative of F with respect to u where > > >> u_t has been _defined_ as an affine function of u, i.e., > > >> shift*u+affine. u_tShift comes from the chain rule. When > > >> computing the total derivative, we have > > >> > > >> dF/du + dF/du_t du_t/du. > > >> > > >> > > >> >> 2. Is DMProjectFunction necessary _before_ TSSolve? This acts > > >> >> like an initial condition if i'm not mistaken. > > >> >> > > >> > > > >> > Yes, this is the initial condition. > > >> > > > >> > > > >> >> 3. A more in depth question i guess. Where is the "mass > > >> >> action" formed? As i could see by stepping through the > > >> >> debugger, there is > > just > > >> >> a formed action for the residual equation. It seems way over > > >> >> my understanding how this formulation works out. I'd also > > >> >> appreciate resources on that if thats possible. > > >> >> > > >> > > > >> > Jed is the only one who understands this completely. > > >> > > >> That's a stretch -- several other people have developed > > >> sophisticated TS implementations. > > > > > > > > > Matt does not understand this completely. > > > > > >> > > >> > > >> > However, I guess by "mass action" you mean the dF/du_t term. > > >> > In the explicit methods, you just have u_t + ..., so > > >> > > > >> > dF/du_t = M > > >> > > > >> > for finite element methods. So you are putting that there in > > >> > FormIJacobian(). In the simplest > > >> > case of backwards Euler then u_tShift would be 1/dt. > > >> > > >> Specifically, for implicit methods, and many semi-implicit > > >> methods, we don't need M separate. > > > > > > > > > Yes. > > > > > > Matt > > > > > > -- > > > What most experimenters take for granted before they begin their > > experiments > > > is infinitely more interesting than any results to which their > > experiments > > > lead. > > > -- Norbert Wiener > > > > > From knepley at gmail.com Mon Nov 14 07:35:27 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 14 Nov 2016 07:35:27 -0600 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: <87inrve44u.fsf@jedbrown.org> Message-ID: On Mon, Nov 14, 2016 at 3:24 AM, Julian Andrej wrote: > I think i'm understanding the concept now. Although i have another set > of questions. If i am formulating a DAE (like in the linear stokes > equation for example) it seems i am missing something to formulate the > correct jacobian. The residual formulation with snes_mf or snes_fd > works fine in terms of nonlinear convergence. If i use the hand coded > jacobian the convergence is way slower, which is a reason for an > incorrect jacobian formulation from my side (at least what i think > right now). I should be able to test my jacobian with -snes_type test, > even if i am using TS, right? This gives me a huge difference. I guess > i am missing something in the formulation and thus in the > implementation of the callbacks here. > > There is a small example attached. > There are a few problems here, but first here are my options for the run -vel_petscspace_order 2 -vel_petscspace_poly_tensor 1 -pres_petscspace_order 1 -pres_petscspace_poly_tensor 1 -ts_dt 0.0001 -ts_max_steps 5 -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_precondition full -fieldsplit_velocity_pc_type lu -fieldsplit_pressure_ksp_rtol 1.0e-9 -fieldsplit_pressure_pc_type svd -ts_monitor -snes_monitor -snes_view -snes_converged_reason -ksp_converged_reason -ksp_monitor 1) Your g00 term was wrong since it did not handle all velocity components void g0_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscScalar g0[]) { PetscInt d; for (d = 0; d < dim; ++d) g0[d*dim+d] = u_tShift*1.0; } 2) You do not handle the null space for the pressure solve right now. The easy way is to use SVD for the PC, however this is not scalable. Eventually, you want to specify the constant null space for that solve. I do it in ex62. 3) I still do not know what is wrong with the exact solution... Thanks, Matt > I appreciate your time and help. > > On Thu, Nov 10, 2016 at 4:45 PM, Matthew Knepley > wrote: > > On Thu, Nov 10, 2016 at 9:38 AM, Jed Brown wrote: > >> > >> Matthew Knepley writes: > >> > >> > On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej > >> > wrote: > >> > > >> >> I'm getting the correct solution now, thanks! There are still a few > >> >> open questions. > >> >> > >> >> 1. The mass term is necessary _and_ using the u_tShift value if i > >> >> provide the jacobian. After reading the manual countless times, i > >> >> still don't get what the u_tShift value tells me in this context. Are > >> >> there any resources which you could point me to? > >> >> > >> > > >> > The manual is always a lagging resource because we are trying things > >> > out. > >> > >> This has been explained in the manual similarly to your email for > >> several years. If anyone has a suggestion for how to make it better, > >> we'd like to hear. The typical syndrome is that once you learn it, the > >> description suddenly makes sense and you wonder why you were ever > >> confused. It takes feedback from people just learning the material to > >> make the explanation more clear. > >> > >> > I learned about this by reading examples. The idea is the > >> > following. We have an implicit definition of our timestepping method > >> > > >> > F(u, grad u, u_t, x, t) = 0 > >> > >> It doesn't make sense to write grad u as a separate argument here. > > > > > > Sorry, that is just how I think of it, not the actual interface. > > > >> > >> Also, is `x` meant to be coordinates or some other statically prescribed > > > > > > Coordinates, as distinct from u. Again this is my fault. > > > >> > >> data? It can't be actively changing if you expect a generic TS to be > >> convergent. (It's not an argument to the function.) So really, you > >> have: > >> > >> F(u, u_t, t) = 0 > >> > >> > which is not unlike a Lagrangian description of a mechanical system. > The > >> > Jacobian can be considered > >> > formally to have two parts, > >> > > >> > dF/du and dF/du_t > >> > > >> > just as in the Lagrangian setting. The u_tShift variable is the > >> > multiplier > >> > for dF/du_t so that you actually > >> > form > >> > > >> > dF/du + u_tShift dF/du_t > >> > >> We're taking the total derivative of F with respect to u where u_t has > >> been _defined_ as an affine function of u, i.e., shift*u+affine. > >> u_tShift comes from the chain rule. When computing the total > >> derivative, we have > >> > >> dF/du + dF/du_t du_t/du. > >> > >> > >> >> 2. Is DMProjectFunction necessary _before_ TSSolve? This acts like an > >> >> initial condition if i'm not mistaken. > >> >> > >> > > >> > Yes, this is the initial condition. > >> > > >> > > >> >> 3. A more in depth question i guess. Where is the "mass action" > >> >> formed? As i could see by stepping through the debugger, there is > just > >> >> a formed action for the residual equation. It seems way over my > >> >> understanding how this formulation works out. I'd also appreciate > >> >> resources on that if thats possible. > >> >> > >> > > >> > Jed is the only one who understands this completely. > >> > >> That's a stretch -- several other people have developed sophisticated TS > >> implementations. > > > > > > Matt does not understand this completely. > > > >> > >> > >> > However, I guess by "mass action" you mean the dF/du_t term. In the > >> > explicit methods, you just have u_t + ..., so > >> > > >> > dF/du_t = M > >> > > >> > for finite element methods. So you are putting that there in > >> > FormIJacobian(). In the simplest > >> > case of backwards Euler then u_tShift would be 1/dt. > >> > >> Specifically, for implicit methods, and many semi-implicit methods, we > >> don't need M separate. > > > > > > Yes. > > > > Matt > > > > -- > > What most experimenters take for granted before they begin their > experiments > > is infinitely more interesting than any results to which their > experiments > > lead. > > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Nov 14 07:53:45 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 14 Nov 2016 07:53:45 -0600 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: <87inrve44u.fsf@jedbrown.org> Message-ID: On Mon, Nov 14, 2016 at 7:35 AM, Matthew Knepley wrote: > On Mon, Nov 14, 2016 at 3:24 AM, Julian Andrej > wrote: > >> I think i'm understanding the concept now. Although i have another set >> of questions. If i am formulating a DAE (like in the linear stokes >> equation for example) it seems i am missing something to formulate the >> correct jacobian. The residual formulation with snes_mf or snes_fd >> works fine in terms of nonlinear convergence. If i use the hand coded >> jacobian the convergence is way slower, which is a reason for an >> incorrect jacobian formulation from my side (at least what i think >> right now). I should be able to test my jacobian with -snes_type test, >> even if i am using TS, right? This gives me a huge difference. I guess >> i am missing something in the formulation and thus in the >> implementation of the callbacks here. >> >> There is a small example attached. >> > > There are a few problems here, but first here are my options for the run > > -vel_petscspace_order 2 -vel_petscspace_poly_tensor 1 > -pres_petscspace_order 1 -pres_petscspace_poly_tensor 1 > -ts_dt 0.0001 -ts_max_steps 5 > -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_precondition > full > -fieldsplit_velocity_pc_type lu > -fieldsplit_pressure_ksp_rtol 1.0e-9 -fieldsplit_pressure_pc_type svd > -ts_monitor -snes_monitor -snes_view -snes_converged_reason > -ksp_converged_reason -ksp_monitor > > 1) Your g00 term was wrong since it did not handle all velocity components > > void g0_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, > const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], > const PetscScalar u_t[], const PetscScalar u_x[], > const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], > const PetscScalar a_t[], const PetscScalar a_x[], > PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscScalar g0[]) > { > PetscInt d; > for (d = 0; d < dim; ++d) g0[d*dim+d] = u_tShift*1.0; > } > > 2) You do not handle the null space for the pressure solve right now. The > easy way is to use SVD for the PC, however this > is not scalable. Eventually, you want to specify the constant null > space for that solve. I do it in ex62. > > 3) I still do not know what is wrong with the exact solution... > I found it. You are not making the initial condition. Uncomment the line above TSSolve(). Thanks, Matt > Thanks, > > Matt > > >> I appreciate your time and help. >> >> On Thu, Nov 10, 2016 at 4:45 PM, Matthew Knepley >> wrote: >> > On Thu, Nov 10, 2016 at 9:38 AM, Jed Brown wrote: >> >> >> >> Matthew Knepley writes: >> >> >> >> > On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej >> >> > wrote: >> >> > >> >> >> I'm getting the correct solution now, thanks! There are still a few >> >> >> open questions. >> >> >> >> >> >> 1. The mass term is necessary _and_ using the u_tShift value if i >> >> >> provide the jacobian. After reading the manual countless times, i >> >> >> still don't get what the u_tShift value tells me in this context. >> Are >> >> >> there any resources which you could point me to? >> >> >> >> >> > >> >> > The manual is always a lagging resource because we are trying things >> >> > out. >> >> >> >> This has been explained in the manual similarly to your email for >> >> several years. If anyone has a suggestion for how to make it better, >> >> we'd like to hear. The typical syndrome is that once you learn it, the >> >> description suddenly makes sense and you wonder why you were ever >> >> confused. It takes feedback from people just learning the material to >> >> make the explanation more clear. >> >> >> >> > I learned about this by reading examples. The idea is the >> >> > following. We have an implicit definition of our timestepping method >> >> > >> >> > F(u, grad u, u_t, x, t) = 0 >> >> >> >> It doesn't make sense to write grad u as a separate argument here. >> > >> > >> > Sorry, that is just how I think of it, not the actual interface. >> > >> >> >> >> Also, is `x` meant to be coordinates or some other statically >> prescribed >> > >> > >> > Coordinates, as distinct from u. Again this is my fault. >> > >> >> >> >> data? It can't be actively changing if you expect a generic TS to be >> >> convergent. (It's not an argument to the function.) So really, you >> >> have: >> >> >> >> F(u, u_t, t) = 0 >> >> >> >> > which is not unlike a Lagrangian description of a mechanical system. >> The >> >> > Jacobian can be considered >> >> > formally to have two parts, >> >> > >> >> > dF/du and dF/du_t >> >> > >> >> > just as in the Lagrangian setting. The u_tShift variable is the >> >> > multiplier >> >> > for dF/du_t so that you actually >> >> > form >> >> > >> >> > dF/du + u_tShift dF/du_t >> >> >> >> We're taking the total derivative of F with respect to u where u_t has >> >> been _defined_ as an affine function of u, i.e., shift*u+affine. >> >> u_tShift comes from the chain rule. When computing the total >> >> derivative, we have >> >> >> >> dF/du + dF/du_t du_t/du. >> >> >> >> >> >> >> 2. Is DMProjectFunction necessary _before_ TSSolve? This acts like >> an >> >> >> initial condition if i'm not mistaken. >> >> >> >> >> > >> >> > Yes, this is the initial condition. >> >> > >> >> > >> >> >> 3. A more in depth question i guess. Where is the "mass action" >> >> >> formed? As i could see by stepping through the debugger, there is >> just >> >> >> a formed action for the residual equation. It seems way over my >> >> >> understanding how this formulation works out. I'd also appreciate >> >> >> resources on that if thats possible. >> >> >> >> >> > >> >> > Jed is the only one who understands this completely. >> >> >> >> That's a stretch -- several other people have developed sophisticated >> TS >> >> implementations. >> > >> > >> > Matt does not understand this completely. >> > >> >> >> >> >> >> > However, I guess by "mass action" you mean the dF/du_t term. In the >> >> > explicit methods, you just have u_t + ..., so >> >> > >> >> > dF/du_t = M >> >> > >> >> > for finite element methods. So you are putting that there in >> >> > FormIJacobian(). In the simplest >> >> > case of backwards Euler then u_tShift would be 1/dt. >> >> >> >> Specifically, for implicit methods, and many semi-implicit methods, we >> >> don't need M separate. >> > >> > >> > Yes. >> > >> > Matt >> > >> > -- >> > What most experimenters take for granted before they begin their >> experiments >> > is infinitely more interesting than any results to which their >> experiments >> > lead. >> > -- Norbert Wiener >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From juan at tf.uni-kiel.de Mon Nov 14 08:13:36 2016 From: juan at tf.uni-kiel.de (Julian Andrej) Date: Mon, 14 Nov 2016 15:13:36 +0100 Subject: [petsc-users] PetscFE and TS In-Reply-To: References: <87inrve44u.fsf@jedbrown.org> Message-ID: <20161114151336.4db32f57@saga> You're absolutely right, i missed the y-direction component of the momentum equation in the mass matrix integration. I guess i have most of the parts i need from here to investigate the remaining on my own! Thank you so much! On Mon, 14 Nov 2016 07:53:45 -0600 Matthew Knepley wrote: > On Mon, Nov 14, 2016 at 7:35 AM, Matthew Knepley > wrote: > > > On Mon, Nov 14, 2016 at 3:24 AM, Julian Andrej > > wrote: > > > >> I think i'm understanding the concept now. Although i have another > >> set of questions. If i am formulating a DAE (like in the linear > >> stokes equation for example) it seems i am missing something to > >> formulate the correct jacobian. The residual formulation with > >> snes_mf or snes_fd works fine in terms of nonlinear convergence. > >> If i use the hand coded jacobian the convergence is way slower, > >> which is a reason for an incorrect jacobian formulation from my > >> side (at least what i think right now). I should be able to test > >> my jacobian with -snes_type test, even if i am using TS, right? > >> This gives me a huge difference. I guess i am missing something in > >> the formulation and thus in the implementation of the callbacks > >> here. > >> > >> There is a small example attached. > >> > > > > There are a few problems here, but first here are my options for > > the run > > > > -vel_petscspace_order 2 -vel_petscspace_poly_tensor 1 > > -pres_petscspace_order 1 -pres_petscspace_poly_tensor 1 > > -ts_dt 0.0001 -ts_max_steps 5 > > -pc_type fieldsplit -pc_fieldsplit_type schur > > -pc_fieldsplit_schur_precondition full > > -fieldsplit_velocity_pc_type lu > > -fieldsplit_pressure_ksp_rtol 1.0e-9 -fieldsplit_pressure_pc_type > > svd -ts_monitor -snes_monitor -snes_view -snes_converged_reason > > -ksp_converged_reason -ksp_monitor > > > > 1) Your g00 term was wrong since it did not handle all velocity > > components > > > > void g0_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, > > const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar > > u[], const PetscScalar u_t[], const PetscScalar u_x[], > > const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar > > a[], const PetscScalar a_t[], const PetscScalar a_x[], > > PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscScalar > > g0[]) { > > PetscInt d; > > for (d = 0; d < dim; ++d) g0[d*dim+d] = u_tShift*1.0; > > } > > > > 2) You do not handle the null space for the pressure solve right > > now. The easy way is to use SVD for the PC, however this > > is not scalable. Eventually, you want to specify the constant > > null space for that solve. I do it in ex62. > > > > 3) I still do not know what is wrong with the exact solution... > > > > I found it. You are not making the initial condition. Uncomment the > line above TSSolve(). > > Thanks, > > Matt > > > > Thanks, > > > > Matt > > > > > >> I appreciate your time and help. > >> > >> On Thu, Nov 10, 2016 at 4:45 PM, Matthew Knepley > >> wrote: > >> > On Thu, Nov 10, 2016 at 9:38 AM, Jed Brown > >> > wrote: > >> >> > >> >> Matthew Knepley writes: > >> >> > >> >> > On Thu, Nov 10, 2016 at 1:31 AM, Julian Andrej > >> >> > wrote: > >> >> > > >> >> >> I'm getting the correct solution now, thanks! There are > >> >> >> still a few open questions. > >> >> >> > >> >> >> 1. The mass term is necessary _and_ using the u_tShift value > >> >> >> if i provide the jacobian. After reading the manual > >> >> >> countless times, i still don't get what the u_tShift value > >> >> >> tells me in this context. > >> Are > >> >> >> there any resources which you could point me to? > >> >> >> > >> >> > > >> >> > The manual is always a lagging resource because we are trying > >> >> > things out. > >> >> > >> >> This has been explained in the manual similarly to your email > >> >> for several years. If anyone has a suggestion for how to make > >> >> it better, we'd like to hear. The typical syndrome is that > >> >> once you learn it, the description suddenly makes sense and you > >> >> wonder why you were ever confused. It takes feedback from > >> >> people just learning the material to make the explanation more > >> >> clear. > >> >> > I learned about this by reading examples. The idea is the > >> >> > following. We have an implicit definition of our timestepping > >> >> > method > >> >> > > >> >> > F(u, grad u, u_t, x, t) = 0 > >> >> > >> >> It doesn't make sense to write grad u as a separate argument > >> >> here. > >> > > >> > > >> > Sorry, that is just how I think of it, not the actual interface. > >> > > >> >> > >> >> Also, is `x` meant to be coordinates or some other statically > >> prescribed > >> > > >> > > >> > Coordinates, as distinct from u. Again this is my fault. > >> > > >> >> > >> >> data? It can't be actively changing if you expect a generic TS > >> >> to be convergent. (It's not an argument to the function.) So > >> >> really, you have: > >> >> > >> >> F(u, u_t, t) = 0 > >> >> > >> >> > which is not unlike a Lagrangian description of a mechanical > >> >> > system. > >> The > >> >> > Jacobian can be considered > >> >> > formally to have two parts, > >> >> > > >> >> > dF/du and dF/du_t > >> >> > > >> >> > just as in the Lagrangian setting. The u_tShift variable is > >> >> > the multiplier > >> >> > for dF/du_t so that you actually > >> >> > form > >> >> > > >> >> > dF/du + u_tShift dF/du_t > >> >> > >> >> We're taking the total derivative of F with respect to u where > >> >> u_t has been _defined_ as an affine function of u, i.e., > >> >> shift*u+affine. u_tShift comes from the chain rule. When > >> >> computing the total derivative, we have > >> >> > >> >> dF/du + dF/du_t du_t/du. > >> >> > >> >> > >> >> >> 2. Is DMProjectFunction necessary _before_ TSSolve? This > >> >> >> acts like > >> an > >> >> >> initial condition if i'm not mistaken. > >> >> >> > >> >> > > >> >> > Yes, this is the initial condition. > >> >> > > >> >> > > >> >> >> 3. A more in depth question i guess. Where is the "mass > >> >> >> action" formed? As i could see by stepping through the > >> >> >> debugger, there is > >> just > >> >> >> a formed action for the residual equation. It seems way over > >> >> >> my understanding how this formulation works out. I'd also > >> >> >> appreciate resources on that if thats possible. > >> >> >> > >> >> > > >> >> > Jed is the only one who understands this completely. > >> >> > >> >> That's a stretch -- several other people have developed > >> >> sophisticated > >> TS > >> >> implementations. > >> > > >> > > >> > Matt does not understand this completely. > >> > > >> >> > >> >> > >> >> > However, I guess by "mass action" you mean the dF/du_t term. > >> >> > In the explicit methods, you just have u_t + ..., so > >> >> > > >> >> > dF/du_t = M > >> >> > > >> >> > for finite element methods. So you are putting that there in > >> >> > FormIJacobian(). In the simplest > >> >> > case of backwards Euler then u_tShift would be 1/dt. > >> >> > >> >> Specifically, for implicit methods, and many semi-implicit > >> >> methods, we don't need M separate. > >> > > >> > > >> > Yes. > >> > > >> > Matt > >> > > >> > -- > >> > What most experimenters take for granted before they begin > >> > their > >> experiments > >> > is infinitely more interesting than any results to which their > >> experiments > >> > lead. > >> > -- Norbert Wiener > >> > > > > > > > > -- > > What most experimenters take for granted before they begin their > > experiments is infinitely more interesting than any results to > > which their experiments lead. > > -- Norbert Wiener > > > > > From leejearl at 126.com Mon Nov 14 08:59:30 2016 From: leejearl at 126.com (leejearl) Date: Mon, 14 Nov 2016 22:59:30 +0800 Subject: [petsc-users] A question of DMPlexGetAdjacency Message-ID: Hi all: I am not sure the using of the function "DMPlexGetAdjacency". My codes are as follows: PetscInt adj, *adjSize=NULL; ierr = DMPlexGetAdjacency(dm, p, &adj, &adj); Sometimes, The above codes works. But, it always gets an error: [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Petsc has generated inconsistent data [0]PETSC ERROR: Invalid mesh exceeded adjacency allocation (1) [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.7.4-1864-ga10654c GIT Date: 2016-11-01 22:25:06 -0500 [0]PETSC ERROR: ./cavity on a arch-linux2-c-debug named leejearl by leejearl Mon Nov 14 22:57:03 2016 [0]PETSC ERROR: Configure options --prefix=/home/leejearl/Install/Petsc --with-mpi-dir=/home/leejearl/Install/openmpi/1.8.5_gnu --download-exodusii=../externalpackages/exodus-5.24.tar.bz2 --download-netcdf=../externalpackages/netcdf-4.3.2.tar.gz --download-hdf5=../externalpackages/hdf5-1.8.12.tar.gz --download-triangle=../externalpackages/Triangle.tar.gz --download-sowing=../externalpackages/git.sowing.tar.gz [0]PETSC ERROR: #1 DMPlexGetAdjacency_Cone_Internal() line 193 in /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c [0]PETSC ERROR: #2 DMPlexGetAdjacency_Internal() line 298 in /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c [0]PETSC ERROR: #3 DMPlexGetAdjacency() line 372 in /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c [0]PETSC ERROR: #4 CalcConVarGradient() line 98 in /home/leejearl/Desktop/PETSc/gkscavity/cavity.c Can anyone help me with the origin of the error? or help me with a sample code of the use of function "DMPlexGetAdjacency". Thanks leejearl From lawrence.mitchell at imperial.ac.uk Mon Nov 14 09:09:42 2016 From: lawrence.mitchell at imperial.ac.uk (Lawrence Mitchell) Date: Mon, 14 Nov 2016 15:09:42 +0000 Subject: [petsc-users] A question of DMPlexGetAdjacency In-Reply-To: References: Message-ID: <80312A42-3192-4545-ABC4-1A74F85736A1@imperial.ac.uk> > On 14 Nov 2016, at 14:59, leejearl wrote: > > Hi all: > > I am not sure the using of the function "DMPlexGetAdjacency". > > My codes are as follows: > > PetscInt adj, *adjSize=NULL; > > ierr = DMPlexGetAdjacency(dm, p, &adj, &adj); Your calling sequence is wrong: PetscInt adjSize; PetscInt *adj = NULL; ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj); CHKERRQ(ierr); adjSize is now the size of the adj array. You should remember to free it afterwards: /* use adj here * ... ierr = PetscFree(adj); CHKERRQ(ierr); Lawrence From aks084000 at utdallas.edu Mon Nov 14 13:38:05 2016 From: aks084000 at utdallas.edu (Safin, Artur) Date: Mon, 14 Nov 2016 19:38:05 +0000 Subject: [petsc-users] Shell preconditioner within a fieldsplit In-Reply-To: References: <2b3b76aa63234ba3b6378c207f4df51a@utdallas.edu> , Message-ID: <8490f7dd41e14af88d0d87accb3d21d6@utdallas.edu> Barry, Dave, Turns out both your suggestions were necessary to get the preconditioner working properly. Thank you for the help! Artur ________________________________ From: Dave May Sent: Monday, November 14, 2016 1:20 AM To: Safin, Artur; petsc-users at mcs.anl.gov Subject: Re: [petsc-users] Shell preconditioner within a fieldsplit Damn - the last part of my email is wrong. You want to set the PCType to "mat". KSPType preonly is fine On Mon, 14 Nov 2016 at 07:04, Dave May > wrote: Looks like you want the contents of your mat shell, specifically the op Ax, to define the action of the preconditioner. You need to either create a PCShell (rather than a MatShell), and define the operation called by PCApply(), or keep you current shell but change "preonly" to "mat". http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/PC/PCMAT.html#PCMAT Thanks Dave On Mon, 14 Nov 2016 at 06:36, Safin, Artur > wrote: Hello, What is the proper way to set up a shell preconditioner within a fielsplit? I have tried it on my own, but do not get the proper behavior. The relevant portion looks like this: __________________________________________________________________ // Global System KSPSetOperators(ksp, A, A); // Skipped code.. // Shell Preconditioner for the pressure sub-block KSP *subksp; PCFieldSplitGetSubKSP(pc, NULL, &subksp); Mat pressureA; KSPSetType(subksp[0], "preonly"); MatCreateShell(MPI_COMM_WORLD, n_local_P_dofs, n_local_P_dofs, , PETSC_DETERMINE, PETSC_DETERMINE, &pressureA); MatShellSetOperation(pressureA, MATOP_MULT, (void(*)(void)) PressureBlock); KSPSetOperators(subksp[0], pressureA, pressureA); // Skipped code.. KSPSetUp(ksp); KSPSolve(ksp, b, x); __________________________________________________________________ The fieldsplit component works fine; the solver however does not go into the custom function PressureBlock(), so I am curious as to what the correct approach is. Best, Artur -------------- next part -------------- An HTML attachment was scrubbed... URL: From leejearl at 126.com Mon Nov 14 18:51:33 2016 From: leejearl at 126.com (leejearl) Date: Tue, 15 Nov 2016 08:51:33 +0800 Subject: [petsc-users] A question of DMPlexGetAdjacency In-Reply-To: <80312A42-3192-4545-ABC4-1A74F85736A1@imperial.ac.uk> References: <80312A42-3192-4545-ABC4-1A74F85736A1@imperial.ac.uk> Message-ID: <988f31e0-592d-0e00-75b6-54b68341a4e3@126.com> Hi, Lawrence: Thank you for your kind reply. I have modified by codes following your advices. Now, it works well. Many thanks for your helps. leejearl On 2016?11?14? 23:09, Lawrence Mitchell wrote: >> On 14 Nov 2016, at 14:59, leejearl wrote: >> >> Hi all: >> >> I am not sure the using of the function "DMPlexGetAdjacency". >> >> My codes are as follows: >> >> PetscInt adj, *adjSize=NULL; >> >> ierr = DMPlexGetAdjacency(dm, p, &adj, &adj); > > Your calling sequence is wrong: > > PetscInt adjSize; > PetscInt *adj = NULL; > > ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj); CHKERRQ(ierr); > > adjSize is now the size of the adj array. You should remember to free it afterwards: > > /* use adj here * > ... > > ierr = PetscFree(adj); CHKERRQ(ierr); > > Lawrence From leejearl at 126.com Tue Nov 15 01:00:42 2016 From: leejearl at 126.com (leejearl) Date: Tue, 15 Nov 2016 15:00:42 +0800 Subject: [petsc-users] A question of DMPlexGetAdjacency In-Reply-To: <80312A42-3192-4545-ABC4-1A74F85736A1@imperial.ac.uk> References: <80312A42-3192-4545-ABC4-1A74F85736A1@imperial.ac.uk> Message-ID: <33fdc7d5-4db4-5255-b07c-7bf675d763d6@126.com> Hi Lawrence: Thank you for your prompt reply. It works well, but I encounter another problem. The code is as follows: PetscScalar *arrayConVar, *arrayDeltaX, *arrayDeltaY; ierr = DMPlexGetAdjacency(dm, c, &adjSize, &adj); CHKERRQ(ierr); /*PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adjSize = %d\n", adjSize);*/ adjSizeInterior = -1; for(i = 0; i < adjSize; i++) { if(adj[i] < cEndInterior) { adjSizeInterior++; /*PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adj[%d]= %d\n", i, adj[i]);*/ } } /* PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adjSizeInterior = %d\n", adjSizeInterior); PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT); */ ierr = PetscMalloc3(adjSizeInterior*4, &arrayConVar, adjSizeInterior, &arrayDeltaX, adjSizeInterior, &arrayDeltaY); CHKERRQ(ierr); PetscFree3(arrayConVar, arrayDeltaX, arrayDeltaY); CHKERRQ(ierr); ierr = PetscFree(adj); CHKERRQ(ierr); The error messages are like as : [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Petsc has generated inconsistent data [0]PETSC ERROR: Invalid mesh exceeded adjacency allocation (0) [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.7.4-1864-ga10654c GIT Date: 2016-11-01 22:25:06 -0500 [0]PETSC ERROR: ./cavity on a arch-linux2-c-debug named leejearl by leejearl Tue Nov 15 14:48:57 2016 [0]PETSC ERROR: Configure options --prefix=/home/leejearl/Install/Petsc --with-mpi-dir=/home/leejearl/Install/openmpi/1.8.5_gnu --download-exodusii=../externalpackages/exodus-5.24.tar.bz2 --download-netcdf=../externalpackages/netcdf-4.3.2.tar.gz --download-hdf5=../externalpackages/hdf5-1.8.12.tar.gz --download-triangle=../externalpackages/Triangle.tar.gz --download-sowing=../externalpackages/git.sowing.tar.gz [0]PETSC ERROR: #1 DMPlexGetAdjacency_Cone_Internal() line 193 in /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c [0]PETSC ERROR: #2 DMPlexGetAdjacency_Internal() line 298 in /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c [0]PETSC ERROR: #3 DMPlexGetAdjacency() line 372 in /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c [0]PETSC ERROR: #4 CalcConVarGradient() line 126 in /home/leejearl/Desktop/PETSc/GKSCavity_Petsc/cavity.c It is very strange that PetscMalloc3 can arouse such an error. If I comment the statement relative with PetscMalloc3, it is ok! I can not understand what happened. Can anyone figure me out the problems of my codes? I attach the code and the grid, so you can compile in your workstation. Thanks leejearl On 2016?11?14? 23:09, Lawrence Mitchell wrote: >> On 14 Nov 2016, at 14:59, leejearl wrote: >> >> Hi all: >> >> I am not sure the using of the function "DMPlexGetAdjacency". >> >> My codes are as follows: >> >> PetscInt adj, *adjSize=NULL; >> >> ierr = DMPlexGetAdjacency(dm, p, &adj, &adj); > > Your calling sequence is wrong: > > PetscInt adjSize; > PetscInt *adj = NULL; > > ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj); CHKERRQ(ierr); > > adjSize is now the size of the adj array. You should remember to free it afterwards: > > /* use adj here * > ... > > ierr = PetscFree(adj); CHKERRQ(ierr); > > Lawrence -------------- next part -------------- A non-text attachment was scrubbed... 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Name: cavity.exo Type: application/octet-stream Size: 344931 bytes Desc: not available URL: -------------- next part -------------- All: cavity CFLAGS = FFLAGS = CPPFLAGS = FPPFLAGS = LOCDIR = ./ EXAMPLESC = cavity.c MANSEC = DM include ${PETSC_DIR}/lib/petsc/conf/variables include ${PETSC_DIR}/lib/petsc/conf/rules cavity: cavity.o chkopts -${CLINKER} -o cavity cavity.o ${PETSC_DM_LIB} ${RM} -f cavity.o #-------------------------------------------------------------------------- include ${PETSC_DIR}/lib/petsc/conf/test From knepley at gmail.com Tue Nov 15 02:20:41 2016 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 15 Nov 2016 02:20:41 -0600 Subject: [petsc-users] A question of DMPlexGetAdjacency In-Reply-To: <33fdc7d5-4db4-5255-b07c-7bf675d763d6@126.com> References: <80312A42-3192-4545-ABC4-1A74F85736A1@imperial.ac.uk> <33fdc7d5-4db4-5255-b07c-7bf675d763d6@126.com> Message-ID: On Tue, Nov 15, 2016 at 1:00 AM, leejearl wrote: > Hi Lawrence: > > Thank you for your prompt reply. It works well, but I encounter > another problem. > > The code is as follows: > > PetscScalar *arrayConVar, *arrayDeltaX, *arrayDeltaY; > > ierr = DMPlexGetAdjacency(dm, c, &adjSize, &adj); CHKERRQ(ierr); > > /*PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adjSize = %d\n", > adjSize);*/ > adjSizeInterior = -1; > for(i = 0; i < adjSize; i++) > { > if(adj[i] < cEndInterior) > { > adjSizeInterior++; > /*PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adj[%d]= > %d\n", i, adj[i]);*/ > } > } > /* > PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adjSizeInterior = > %d\n", adjSizeInterior); > PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT); > */ > > ierr = PetscMalloc3(adjSizeInterior*4, &arrayConVar, > adjSizeInterior, &arrayDeltaX, adjSizeInterior, &arrayDeltaY); > CHKERRQ(ierr); > > PetscFree3(arrayConVar, arrayDeltaX, arrayDeltaY); CHKERRQ(ierr); > ierr = PetscFree(adj); CHKERRQ(ierr); > > The error messages are like as : > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Petsc has generated inconsistent data > [0]PETSC ERROR: Invalid mesh exceeded adjacency allocation (0) > You are resetting the size to 0 in your loop. It needs to be set to PETSC_DETERMINE. This is a very low level routine with complicated memory management for efficiency. It is not intended for most user code. However, here is an example: https://bitbucket.org/petsc/petsc/src/f98bafe09724ec53686c21e51e969e41f10d977b/src/dm/impls/plex/plexdistribute.c?at=master&fileviewer=file-view-default#plexdistribute.c-570 Thanks, Matt > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > for trouble shooting. > [0]PETSC ERROR: Petsc Development GIT revision: v3.7.4-1864-ga10654c GIT > Date: 2016-11-01 22:25:06 -0500 > [0]PETSC ERROR: ./cavity on a arch-linux2-c-debug named leejearl by > leejearl Tue Nov 15 14:48:57 2016 > [0]PETSC ERROR: Configure options --prefix=/home/leejearl/Install/Petsc > --with-mpi-dir=/home/leejearl/Install/openmpi/1.8.5_gnu > --download-exodusii=../externalpackages/exodus-5.24.tar.bz2 > --download-netcdf=../externalpackages/netcdf-4.3.2.tar.gz > --download-hdf5=../externalpackages/hdf5-1.8.12.tar.gz > --download-triangle=../externalpackages/Triangle.tar.gz > --download-sowing=../externalpackages/git.sowing.tar.gz > [0]PETSC ERROR: #1 DMPlexGetAdjacency_Cone_Internal() line 193 in > /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c > [0]PETSC ERROR: #2 DMPlexGetAdjacency_Internal() line 298 in > /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c > [0]PETSC ERROR: #3 DMPlexGetAdjacency() line 372 in > /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c > [0]PETSC ERROR: #4 CalcConVarGradient() line 126 in > /home/leejearl/Desktop/PETSc/GKSCavity_Petsc/cavity.c > > It is very strange that PetscMalloc3 can arouse such an error. If I > comment the statement relative with PetscMalloc3, it is ok! I can not > understand what happened. > > Can anyone figure me out the problems of my codes? > > I attach the code and the grid, so you can compile in your workstation. > > Thanks > > leejearl > > > On 2016?11?14? 23:09, Lawrence Mitchell wrote: > >> On 14 Nov 2016, at 14:59, leejearl wrote: >>> >>> Hi all: >>> >>> I am not sure the using of the function "DMPlexGetAdjacency". >>> >>> My codes are as follows: >>> >>> PetscInt adj, *adjSize=NULL; >>> >>> ierr = DMPlexGetAdjacency(dm, p, &adj, &adj); >>> >> >> Your calling sequence is wrong: >> >> PetscInt adjSize; >> PetscInt *adj = NULL; >> >> ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj); CHKERRQ(ierr); >> >> adjSize is now the size of the adj array. You should remember to free it >> afterwards: >> >> /* use adj here * >> ... >> >> ierr = PetscFree(adj); CHKERRQ(ierr); >> >> Lawrence >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From leejearl at 126.com Tue Nov 15 06:07:50 2016 From: leejearl at 126.com (leejearl) Date: Tue, 15 Nov 2016 20:07:50 +0800 Subject: [petsc-users] A question of DMPlexGetAdjacency In-Reply-To: References: <80312A42-3192-4545-ABC4-1A74F85736A1@imperial.ac.uk> <33fdc7d5-4db4-5255-b07c-7bf675d763d6@126.com> Message-ID: <458d580e-f761-0b5f-60dd-c534c0abdeee@126.com> Hi, Matt: Thank you for your kind reply. Since it is a low level routine, is there any method which I can used for creating a dynamic array? Thanks leejearl On 2016?11?15? 16:20, Matthew Knepley wrote: > On Tue, Nov 15, 2016 at 1:00 AM, leejearl > wrote: > > Hi Lawrence: > > Thank you for your prompt reply. It works well, but I > encounter another problem. > > The code is as follows: > > PetscScalar *arrayConVar, *arrayDeltaX, *arrayDeltaY; > > ierr = DMPlexGetAdjacency(dm, c, &adjSize, &adj); > CHKERRQ(ierr); > > /*PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adjSize = > %d\n", adjSize);*/ > adjSizeInterior = -1; > for(i = 0; i < adjSize; i++) > { > if(adj[i] < cEndInterior) > { > adjSizeInterior++; > /*PetscSynchronizedPrintf(PETSC_COMM_WORLD, > "adj[%d]= %d\n", i, adj[i]);*/ > } > } > /* > PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adjSizeInterior > = %d\n", adjSizeInterior); > PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT); > */ > > ierr = PetscMalloc3(adjSizeInterior*4, &arrayConVar, > adjSizeInterior, &arrayDeltaX, adjSizeInterior, &arrayDeltaY); > CHKERRQ(ierr); > > PetscFree3(arrayConVar, arrayDeltaX, arrayDeltaY); > CHKERRQ(ierr); > ierr = PetscFree(adj); CHKERRQ(ierr); > > The error messages are like as : > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Petsc has generated inconsistent data > [0]PETSC ERROR: Invalid mesh exceeded adjacency allocation (0) > > > You are resetting the size to 0 in your loop. It needs to be set to > PETSC_DETERMINE. > > This is a very low level routine with complicated memory management > for efficiency. It is not intended for > most user code. However, here is an example: > > https://bitbucket.org/petsc/petsc/src/f98bafe09724ec53686c21e51e969e41f10d977b/src/dm/impls/plex/plexdistribute.c?at=master&fileviewer=file-view-default#plexdistribute.c-570 > > Thanks, > > Matt > > [0]PETSC ERROR: See > http://www.mcs.anl.gov/petsc/documentation/faq.html > for trouble > shooting. > [0]PETSC ERROR: Petsc Development GIT revision: > v3.7.4-1864-ga10654c GIT Date: 2016-11-01 22:25:06 -0500 > [0]PETSC ERROR: ./cavity on a arch-linux2-c-debug named leejearl > by leejearl Tue Nov 15 14:48:57 2016 > [0]PETSC ERROR: Configure options > --prefix=/home/leejearl/Install/Petsc > --with-mpi-dir=/home/leejearl/Install/openmpi/1.8.5_gnu > --download-exodusii=../externalpackages/exodus-5.24.tar.bz2 > --download-netcdf=../externalpackages/netcdf-4.3.2.tar.gz > --download-hdf5=../externalpackages/hdf5-1.8.12.tar.gz > --download-triangle=../externalpackages/Triangle.tar.gz > --download-sowing=../externalpackages/git.sowing.tar.gz > [0]PETSC ERROR: #1 DMPlexGetAdjacency_Cone_Internal() line 193 in > /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c > [0]PETSC ERROR: #2 DMPlexGetAdjacency_Internal() line 298 in > /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c > [0]PETSC ERROR: #3 DMPlexGetAdjacency() line 372 in > /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c > [0]PETSC ERROR: #4 CalcConVarGradient() line 126 in > /home/leejearl/Desktop/PETSc/GKSCavity_Petsc/cavity.c > > It is very strange that PetscMalloc3 can arouse such an error. If > I comment the statement relative with PetscMalloc3, it is ok! I > can not understand what happened. > > Can anyone figure me out the problems of my codes? > > I attach the code and the grid, so you can compile in your > workstation. > > Thanks > > leejearl > > > On 2016?11?14? 23:09, Lawrence Mitchell wrote: > > On 14 Nov 2016, at 14:59, leejearl > wrote: > > Hi all: > > I am not sure the using of the function > "DMPlexGetAdjacency". > > My codes are as follows: > > PetscInt adj, *adjSize=NULL; > > ierr = DMPlexGetAdjacency(dm, p, &adj, &adj); > > > Your calling sequence is wrong: > > PetscInt adjSize; > PetscInt *adj = NULL; > > ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj); CHKERRQ(ierr); > > adjSize is now the size of the adj array. You should remember > to free it afterwards: > > /* use adj here * > ... > > ierr = PetscFree(adj); CHKERRQ(ierr); > > Lawrence > > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Tue Nov 15 06:09:45 2016 From: knepley at gmail.com (Matthew Knepley) Date: Tue, 15 Nov 2016 06:09:45 -0600 Subject: [petsc-users] A question of DMPlexGetAdjacency In-Reply-To: <458d580e-f761-0b5f-60dd-c534c0abdeee@126.com> References: <80312A42-3192-4545-ABC4-1A74F85736A1@imperial.ac.uk> <33fdc7d5-4db4-5255-b07c-7bf675d763d6@126.com> <458d580e-f761-0b5f-60dd-c534c0abdeee@126.com> Message-ID: On Tue, Nov 15, 2016 at 6:07 AM, leejearl wrote: > Hi, Matt: > Thank you for your kind reply. Since it is a low level routine, is > there any method which I can used for creating a > dynamic array? > I am not sure what you are asking for? Thanks, Matt > Thanks > leejearl > > On 2016?11?15? 16:20, Matthew Knepley wrote: > > On Tue, Nov 15, 2016 at 1:00 AM, leejearl wrote: > >> Hi Lawrence: >> >> Thank you for your prompt reply. It works well, but I encounter >> another problem. >> >> The code is as follows: >> >> PetscScalar *arrayConVar, *arrayDeltaX, *arrayDeltaY; >> >> ierr = DMPlexGetAdjacency(dm, c, &adjSize, &adj); CHKERRQ(ierr); >> >> /*PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adjSize = %d\n", >> adjSize);*/ >> adjSizeInterior = -1; >> for(i = 0; i < adjSize; i++) >> { >> if(adj[i] < cEndInterior) >> { >> adjSizeInterior++; >> /*PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adj[%d]= >> %d\n", i, adj[i]);*/ >> } >> } >> /* >> PetscSynchronizedPrintf(PETSC_COMM_WORLD, "adjSizeInterior = >> %d\n", adjSizeInterior); >> PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT); >> */ >> >> ierr = PetscMalloc3(adjSizeInterior*4, &arrayConVar, >> adjSizeInterior, &arrayDeltaX, adjSizeInterior, &arrayDeltaY); >> CHKERRQ(ierr); >> >> PetscFree3(arrayConVar, arrayDeltaX, arrayDeltaY); CHKERRQ(ierr); >> ierr = PetscFree(adj); CHKERRQ(ierr); >> >> The error messages are like as : >> >> [0]PETSC ERROR: --------------------- Error Message >> -------------------------------------------------------------- >> [0]PETSC ERROR: Petsc has generated inconsistent data >> [0]PETSC ERROR: Invalid mesh exceeded adjacency allocation (0) >> > > You are resetting the size to 0 in your loop. It needs to be set to > PETSC_DETERMINE. > > This is a very low level routine with complicated memory management for > efficiency. It is not intended for > most user code. However, here is an example: > > https://bitbucket.org/petsc/petsc/src/f98bafe09724ec53686c21e51e969e > 41f10d977b/src/dm/impls/plex/plexdistribute.c?at=master& > fileviewer=file-view-default#plexdistribute.c-570 > > Thanks, > > Matt > > >> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >> for trouble shooting. >> [0]PETSC ERROR: Petsc Development GIT revision: v3.7.4-1864-ga10654c GIT >> Date: 2016-11-01 22:25:06 -0500 >> [0]PETSC ERROR: ./cavity on a arch-linux2-c-debug named leejearl by >> leejearl Tue Nov 15 14:48:57 2016 >> [0]PETSC ERROR: Configure options --prefix=/home/leejearl/Install/Petsc >> --with-mpi-dir=/home/leejearl/Install/openmpi/1.8.5_gnu >> --download-exodusii=../externalpackages/exodus-5.24.tar.bz2 >> --download-netcdf=../externalpackages/netcdf-4.3.2.tar.gz >> --download-hdf5=../externalpackages/hdf5-1.8.12.tar.gz >> --download-triangle=../externalpackages/Triangle.tar.gz >> --download-sowing=../externalpackages/git.sowing.tar.gz >> [0]PETSC ERROR: #1 DMPlexGetAdjacency_Cone_Internal() line 193 in >> /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c >> [0]PETSC ERROR: #2 DMPlexGetAdjacency_Internal() line 298 in >> /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c >> [0]PETSC ERROR: #3 DMPlexGetAdjacency() line 372 in >> /home/leejearl/Software/petsc/petsc/src/dm/impls/plex/plexdistribute.c >> [0]PETSC ERROR: #4 CalcConVarGradient() line 126 in >> /home/leejearl/Desktop/PETSc/GKSCavity_Petsc/cavity.c >> >> It is very strange that PetscMalloc3 can arouse such an error. If I >> comment the statement relative with PetscMalloc3, it is ok! I can not >> understand what happened. >> >> Can anyone figure me out the problems of my codes? >> >> I attach the code and the grid, so you can compile in your workstation. >> >> Thanks >> >> leejearl >> >> >> On 2016?11?14? 23:09, Lawrence Mitchell wrote: >> >>> On 14 Nov 2016, at 14:59, leejearl wrote: >>>> >>>> Hi all: >>>> >>>> I am not sure the using of the function "DMPlexGetAdjacency". >>>> >>>> My codes are as follows: >>>> >>>> PetscInt adj, *adjSize=NULL; >>>> >>>> ierr = DMPlexGetAdjacency(dm, p, &adj, &adj); >>>> >>> >>> Your calling sequence is wrong: >>> >>> PetscInt adjSize; >>> PetscInt *adj = NULL; >>> >>> ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj); CHKERRQ(ierr); >>> >>> adjSize is now the size of the adj array. You should remember to free >>> it afterwards: >>> >>> /* use adj here * >>> ... >>> >>> ierr = PetscFree(adj); CHKERRQ(ierr); >>> >>> Lawrence >>> >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bhatiamanav at gmail.com Tue Nov 15 15:03:56 2016 From: bhatiamanav at gmail.com (Manav Bhatia) Date: Tue, 15 Nov 2016 15:03:56 -0600 Subject: [petsc-users] solving system with 2x2 block size Message-ID: Hi, I am setting up a matrix with the following calls. The intent is to solve the system with a 2x2 block size. What combinations of KSP/PC will effectively translate to solving this block matrix system? I saw a discussion about bjacobi in the manual with the following calls (I omitted the prefixes from my actual command): -pc_type bjacobi -pc_bjacobi_blocks 2 -sub_ksp_type preonly -sub_pc_type lu -ksp_view which provides the following output: KSP Object:(fluid_complex_) 1 MPI processes type: gmres GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement GMRES: happy breakdown tolerance 1e-30 maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object:(fluid_complex_) 1 MPI processes type: bjacobi block Jacobi: number of blocks = 2 Local solve is same for all blocks, in the following KSP and PC objects: KSP Object: (fluid_complex_sub_) 1 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (fluid_complex_sub_) 1 MPI processes type: lu LU: out-of-place factorization tolerance for zero pivot 2.22045e-14 matrix ordering: nd factor fill ratio given 5., needed 5.70941 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=36844, cols=36844 package used to perform factorization: petsc total: nonzeros=14748816, allocated nonzeros=14748816 total number of mallocs used during MatSetValues calls =0 using I-node routines: found 9211 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (fluid_complex_) 1 MPI processes type: seqaij rows=36844, cols=36844 total: nonzeros=2583248, allocated nonzeros=2583248 total number of mallocs used during MatSetValues calls =0 using I-node routines: found 9211 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (fluid_complex_) 1 MPI processes type: seqaij rows=73688, cols=73688, bs=2 total: nonzeros=5224384, allocated nonzeros=5224384 total number of mallocs used during MatSetValues calls =0 using I-node routines: found 18422 nodes, limit used is 5 Likewise, I tried to use a more generic option: -mat_set_block_size 2 -ksp_type gmres -pc_type ilu -sub_ksp_type preonly -sub_pc_type lu -ksp_view with the following output: Linear fluid_complex_ solve converged due to CONVERGED_RTOL iterations 38 KSP Object:(fluid_complex_) 1 MPI processes type: gmres GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement GMRES: happy breakdown tolerance 1e-30 maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object:(fluid_complex_) 1 MPI processes type: ilu ILU: out-of-place factorization 0 levels of fill tolerance for zero pivot 2.22045e-14 matrix ordering: natural factor fill ratio given 1., needed 1. Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=73688, cols=73688, bs=2 package used to perform factorization: petsc total: nonzeros=5224384, allocated nonzeros=5224384 total number of mallocs used during MatSetValues calls =0 using I-node routines: found 18422 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (fluid_complex_) 1 MPI processes type: seqaij rows=73688, cols=73688, bs=2 total: nonzeros=5224384, allocated nonzeros=5224384 total number of mallocs used during MatSetValues calls =0 using I-node routines: found 18422 nodes, limit used is 5 Are other PC types expected to translate to the block matrices? I would appreciate any guidance. Thanks, Manav -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Tue Nov 15 15:12:49 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 15 Nov 2016 15:12:49 -0600 Subject: [petsc-users] solving system with 2x2 block size In-Reply-To: References: Message-ID: <8671D88A-904D-4AA9-B750-CE7976D8EE63@mcs.anl.gov> We can help you if you provide more information about what the blocks represent in your problem. Do you have two degrees of freedom at each grid point? What physically are the two degrees of freedom. What equations are you solving? I think you may be mixing up the "matrix block size" of 2 with the blocks in "block Jacobi". Though both are called "block" they really don't have anything to do with each other. Barry > On Nov 15, 2016, at 3:03 PM, Manav Bhatia wrote: > > Hi, > > I am setting up a matrix with the following calls. The intent is to solve the system with a 2x2 block size. > > What combinations of KSP/PC will effectively translate to solving this block matrix system? > > I saw a discussion about bjacobi in the manual with the following calls (I omitted the prefixes from my actual command): > -pc_type bjacobi -pc_bjacobi_blocks 2 -sub_ksp_type preonly -sub_pc_type lu -ksp_view > > which provides the following output: > KSP Object:(fluid_complex_) 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000. > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object:(fluid_complex_) 1 MPI processes > type: bjacobi > block Jacobi: number of blocks = 2 > Local solve is same for all blocks, in the following KSP and PC objects: > KSP Object: (fluid_complex_sub_) 1 MPI processes > type: preonly > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000. > left preconditioning > using NONE norm type for convergence test > PC Object: (fluid_complex_sub_) 1 MPI processes > type: lu > LU: out-of-place factorization > tolerance for zero pivot 2.22045e-14 > matrix ordering: nd > factor fill ratio given 5., needed 5.70941 > Factored matrix follows: > Mat Object: 1 MPI processes > type: seqaij > rows=36844, cols=36844 > package used to perform factorization: petsc > total: nonzeros=14748816, allocated nonzeros=14748816 > total number of mallocs used during MatSetValues calls =0 > using I-node routines: found 9211 nodes, limit used is 5 > linear system matrix = precond matrix: > Mat Object: (fluid_complex_) 1 MPI processes > type: seqaij > rows=36844, cols=36844 > total: nonzeros=2583248, allocated nonzeros=2583248 > total number of mallocs used during MatSetValues calls =0 > using I-node routines: found 9211 nodes, limit used is 5 > linear system matrix = precond matrix: > Mat Object: (fluid_complex_) 1 MPI processes > type: seqaij > rows=73688, cols=73688, bs=2 > total: nonzeros=5224384, allocated nonzeros=5224384 > total number of mallocs used during MatSetValues calls =0 > using I-node routines: found 18422 nodes, limit used is 5 > > > Likewise, I tried to use a more generic option: > -mat_set_block_size 2 -ksp_type gmres -pc_type ilu -sub_ksp_type preonly -sub_pc_type lu -ksp_view > > with the following output: > Linear fluid_complex_ solve converged due to CONVERGED_RTOL iterations 38 > KSP Object:(fluid_complex_) 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000. > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object:(fluid_complex_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 0 levels of fill > tolerance for zero pivot 2.22045e-14 > matrix ordering: natural > factor fill ratio given 1., needed 1. > Factored matrix follows: > Mat Object: 1 MPI processes > type: seqaij > rows=73688, cols=73688, bs=2 > package used to perform factorization: petsc > total: nonzeros=5224384, allocated nonzeros=5224384 > total number of mallocs used during MatSetValues calls =0 > using I-node routines: found 18422 nodes, limit used is 5 > linear system matrix = precond matrix: > Mat Object: (fluid_complex_) 1 MPI processes > type: seqaij > rows=73688, cols=73688, bs=2 > total: nonzeros=5224384, allocated nonzeros=5224384 > total number of mallocs used during MatSetValues calls =0 > using I-node routines: found 18422 nodes, limit used is 5 > > Are other PC types expected to translate to the block matrices? > > I would appreciate any guidance. > > Thanks, > Manav > From bhatiamanav at gmail.com Tue Nov 15 15:23:14 2016 From: bhatiamanav at gmail.com (Manav Bhatia) Date: Tue, 15 Nov 2016 15:23:14 -0600 Subject: [petsc-users] solving system with 2x2 block size In-Reply-To: <8671D88A-904D-4AA9-B750-CE7976D8EE63@mcs.anl.gov> References: <8671D88A-904D-4AA9-B750-CE7976D8EE63@mcs.anl.gov> Message-ID: <68899839-F941-4AEC-9047-CAF6AF4F78E7@gmail.com> I have a complex system, (A + i B) (x + i y) = (f + ig), that I am trying to solve using real matrices: [A -B; B A ] [x; y] = [f; g] So, the 2x2 block is made of the real and imaginary component of each entry in the complex matrix. I am following the discussion in the following paper: DAY D. \& HEROUX M.A. 2001. Solving complex-valued linear systems via equivalent real formulations. \textit{SIAM Journal on Scientific Computing} 23: 480-498. Following is an excerpt. ********************************************************************************** The matrix K in the K formulation has a natural 2-by-2 block structure that can be exploited by using block entry data structures. Using the block entry features of these packages has the following benefits. Applying 2-by-2 block Jacobi scaling to K corresponds exactly to applying point Jacobi scaling to C. The block sparsity pattern of K exactly matches the point sparsity pattern of C. Thus any pattern-based preconditioners such as block ILU(l) applied to K correspond exactly to ILU(l) applied to C. See section 4 for definitions of block ILU(l) and ILU(l). Any drop tolerance-based complex preconditioner has a straightforward K formulation since the absolute value of a complex entry equals the scaled Frobenius norm of the corresponding block entry in K. ********************************************************************************** The paper additional outlines the challenges of the poor spectral properties of the equivalent real system. So, I am assembling the system with a 2x2 block, but am not sure how to best pick the right solver options in Petsc. I agree that I am getting confused by the ?block? nomenclature. Particularly, I am not sure how to reconcile the different notions with points 1 and 2 from the paper (noted above). Any guidance would be appreciated! Thanks, Manav > On Nov 15, 2016, at 3:12 PM, Barry Smith wrote: > > > We can help you if you provide more information about what the blocks represent in your problem. > > Do you have two degrees of freedom at each grid point? What physically are the two degrees of freedom. What equations are you solving? > > I think you may be mixing up the "matrix block size" of 2 with the blocks in "block Jacobi". Though both are called "block" they really don't have anything to do with each other. > > Barry > >> On Nov 15, 2016, at 3:03 PM, Manav Bhatia wrote: >> >> Hi, >> >> I am setting up a matrix with the following calls. The intent is to solve the system with a 2x2 block size. >> >> What combinations of KSP/PC will effectively translate to solving this block matrix system? >> >> I saw a discussion about bjacobi in the manual with the following calls (I omitted the prefixes from my actual command): >> -pc_type bjacobi -pc_bjacobi_blocks 2 -sub_ksp_type preonly -sub_pc_type lu -ksp_view >> >> which provides the following output: >> KSP Object:(fluid_complex_) 1 MPI processes >> type: gmres >> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement >> GMRES: happy breakdown tolerance 1e-30 >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >> left preconditioning >> using PRECONDITIONED norm type for convergence test >> PC Object:(fluid_complex_) 1 MPI processes >> type: bjacobi >> block Jacobi: number of blocks = 2 >> Local solve is same for all blocks, in the following KSP and PC objects: >> KSP Object: (fluid_complex_sub_) 1 MPI processes >> type: preonly >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >> left preconditioning >> using NONE norm type for convergence test >> PC Object: (fluid_complex_sub_) 1 MPI processes >> type: lu >> LU: out-of-place factorization >> tolerance for zero pivot 2.22045e-14 >> matrix ordering: nd >> factor fill ratio given 5., needed 5.70941 >> Factored matrix follows: >> Mat Object: 1 MPI processes >> type: seqaij >> rows=36844, cols=36844 >> package used to perform factorization: petsc >> total: nonzeros=14748816, allocated nonzeros=14748816 >> total number of mallocs used during MatSetValues calls =0 >> using I-node routines: found 9211 nodes, limit used is 5 >> linear system matrix = precond matrix: >> Mat Object: (fluid_complex_) 1 MPI processes >> type: seqaij >> rows=36844, cols=36844 >> total: nonzeros=2583248, allocated nonzeros=2583248 >> total number of mallocs used during MatSetValues calls =0 >> using I-node routines: found 9211 nodes, limit used is 5 >> linear system matrix = precond matrix: >> Mat Object: (fluid_complex_) 1 MPI processes >> type: seqaij >> rows=73688, cols=73688, bs=2 >> total: nonzeros=5224384, allocated nonzeros=5224384 >> total number of mallocs used during MatSetValues calls =0 >> using I-node routines: found 18422 nodes, limit used is 5 >> >> >> Likewise, I tried to use a more generic option: >> -mat_set_block_size 2 -ksp_type gmres -pc_type ilu -sub_ksp_type preonly -sub_pc_type lu -ksp_view >> >> with the following output: >> Linear fluid_complex_ solve converged due to CONVERGED_RTOL iterations 38 >> KSP Object:(fluid_complex_) 1 MPI processes >> type: gmres >> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement >> GMRES: happy breakdown tolerance 1e-30 >> maximum iterations=10000, initial guess is zero >> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >> left preconditioning >> using PRECONDITIONED norm type for convergence test >> PC Object:(fluid_complex_) 1 MPI processes >> type: ilu >> ILU: out-of-place factorization >> 0 levels of fill >> tolerance for zero pivot 2.22045e-14 >> matrix ordering: natural >> factor fill ratio given 1., needed 1. >> Factored matrix follows: >> Mat Object: 1 MPI processes >> type: seqaij >> rows=73688, cols=73688, bs=2 >> package used to perform factorization: petsc >> total: nonzeros=5224384, allocated nonzeros=5224384 >> total number of mallocs used during MatSetValues calls =0 >> using I-node routines: found 18422 nodes, limit used is 5 >> linear system matrix = precond matrix: >> Mat Object: (fluid_complex_) 1 MPI processes >> type: seqaij >> rows=73688, cols=73688, bs=2 >> total: nonzeros=5224384, allocated nonzeros=5224384 >> total number of mallocs used during MatSetValues calls =0 >> using I-node routines: found 18422 nodes, limit used is 5 >> >> Are other PC types expected to translate to the block matrices? >> >> I would appreciate any guidance. >> >> Thanks, >> Manav >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Tue Nov 15 15:34:38 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 15 Nov 2016 15:34:38 -0600 Subject: [petsc-users] solving system with 2x2 block size In-Reply-To: <68899839-F941-4AEC-9047-CAF6AF4F78E7@gmail.com> References: <8671D88A-904D-4AA9-B750-CE7976D8EE63@mcs.anl.gov> <68899839-F941-4AEC-9047-CAF6AF4F78E7@gmail.com> Message-ID: <7492CF3F-B005-4D8E-8C39-88CC88DA915A@mcs.anl.gov> > On Nov 15, 2016, at 3:23 PM, Manav Bhatia wrote: > > I have a complex system, (A + i B) (x + i y) = (f + ig), that I am trying to solve using real matrices: > > [A -B; B A ] [x; y] = [f; g] > > So, the 2x2 block is made of the real and imaginary component of each entry in the complex matrix. > > I am following the discussion in the following paper: > > DAY D. \& HEROUX M.A. 2001. Solving complex-valued linear systems via equivalent real formulations. \textit{SIAM Journal on Scientific Computing} 23: 480-498. > > Following is an excerpt. > > ********************************************************************************** > > The matrix K in the K formulation has a natural 2-by-2 block structure that can be exploited by using block entry data structures. Using the block entry features of these packages has the following benefits. > > ? Applying 2-by-2 block Jacobi scaling to K corresponds exactly to applying point Jacobi scaling to C. > > ? The block sparsity pattern of K exactly matches the point sparsity pattern of C. Thus any pattern-based preconditioners such as block ILU(l) applied to K correspond exactly to ILU(l) applied to C. See section 4 for definitions of block ILU(l) and ILU(l). > > ? Any drop tolerance-based complex preconditioner has a straightforward K formulation since the absolute value of a complex entry equals the scaled Frobenius norm of the corresponding block entry in K. > > ********************************************************************************** > > The paper additional outlines the challenges of the poor spectral properties of the equivalent real system. > > So, I am assembling the system with a 2x2 block, but am not sure how to best pick the right solver options in Petsc. > > I agree that I am getting confused by the ?block? nomenclature. Particularly, I am not sure how to reconcile the different notions with points 1 and 2 from the paper (noted above). In PETSc we call this 2x2 block Jacobi "point-block Jacobi" you can use the option -pc_type pbjacobi. The ILU() in PETSc can also be "point block", this is obtained with the usual -pc_type ilu (that is there is no different preconditioner name for ILU point block). To use all these things you need to make your matrix a BAIJ matrix (not an AIJ) and set its block size to 2. Have you tried solving the matrices as complex? Is there a reason you wish to reformulate them as real? The convergence of iterative methods (either with real or complex numbers) depends on the properties of the A and B (i.e. C) matrix. Where does the C matrix come from? There are many applications that result in complex matrices that are poorly conditioned for iterative methods. Barry > > Any guidance would be appreciated! > > Thanks, > Manav > > >> On Nov 15, 2016, at 3:12 PM, Barry Smith wrote: >> >> >> We can help you if you provide more information about what the blocks represent in your problem. >> >> Do you have two degrees of freedom at each grid point? What physically are the two degrees of freedom. What equations are you solving? >> >> I think you may be mixing up the "matrix block size" of 2 with the blocks in "block Jacobi". Though both are called "block" they really don't have anything to do with each other. >> >> Barry >> >>> On Nov 15, 2016, at 3:03 PM, Manav Bhatia wrote: >>> >>> Hi, >>> >>> I am setting up a matrix with the following calls. The intent is to solve the system with a 2x2 block size. >>> >>> What combinations of KSP/PC will effectively translate to solving this block matrix system? >>> >>> I saw a discussion about bjacobi in the manual with the following calls (I omitted the prefixes from my actual command): >>> -pc_type bjacobi -pc_bjacobi_blocks 2 -sub_ksp_type preonly -sub_pc_type lu -ksp_view >>> >>> which provides the following output: >>> KSP Object:(fluid_complex_) 1 MPI processes >>> type: gmres >>> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement >>> GMRES: happy breakdown tolerance 1e-30 >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>> left preconditioning >>> using PRECONDITIONED norm type for convergence test >>> PC Object:(fluid_complex_) 1 MPI processes >>> type: bjacobi >>> block Jacobi: number of blocks = 2 >>> Local solve is same for all blocks, in the following KSP and PC objects: >>> KSP Object: (fluid_complex_sub_) 1 MPI processes >>> type: preonly >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>> left preconditioning >>> using NONE norm type for convergence test >>> PC Object: (fluid_complex_sub_) 1 MPI processes >>> type: lu >>> LU: out-of-place factorization >>> tolerance for zero pivot 2.22045e-14 >>> matrix ordering: nd >>> factor fill ratio given 5., needed 5.70941 >>> Factored matrix follows: >>> Mat Object: 1 MPI processes >>> type: seqaij >>> rows=36844, cols=36844 >>> package used to perform factorization: petsc >>> total: nonzeros=14748816, allocated nonzeros=14748816 >>> total number of mallocs used during MatSetValues calls =0 >>> using I-node routines: found 9211 nodes, limit used is 5 >>> linear system matrix = precond matrix: >>> Mat Object: (fluid_complex_) 1 MPI processes >>> type: seqaij >>> rows=36844, cols=36844 >>> total: nonzeros=2583248, allocated nonzeros=2583248 >>> total number of mallocs used during MatSetValues calls =0 >>> using I-node routines: found 9211 nodes, limit used is 5 >>> linear system matrix = precond matrix: >>> Mat Object: (fluid_complex_) 1 MPI processes >>> type: seqaij >>> rows=73688, cols=73688, bs=2 >>> total: nonzeros=5224384, allocated nonzeros=5224384 >>> total number of mallocs used during MatSetValues calls =0 >>> using I-node routines: found 18422 nodes, limit used is 5 >>> >>> >>> Likewise, I tried to use a more generic option: >>> -mat_set_block_size 2 -ksp_type gmres -pc_type ilu -sub_ksp_type preonly -sub_pc_type lu -ksp_view >>> >>> with the following output: >>> Linear fluid_complex_ solve converged due to CONVERGED_RTOL iterations 38 >>> KSP Object:(fluid_complex_) 1 MPI processes >>> type: gmres >>> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement >>> GMRES: happy breakdown tolerance 1e-30 >>> maximum iterations=10000, initial guess is zero >>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>> left preconditioning >>> using PRECONDITIONED norm type for convergence test >>> PC Object:(fluid_complex_) 1 MPI processes >>> type: ilu >>> ILU: out-of-place factorization >>> 0 levels of fill >>> tolerance for zero pivot 2.22045e-14 >>> matrix ordering: natural >>> factor fill ratio given 1., needed 1. >>> Factored matrix follows: >>> Mat Object: 1 MPI processes >>> type: seqaij >>> rows=73688, cols=73688, bs=2 >>> package used to perform factorization: petsc >>> total: nonzeros=5224384, allocated nonzeros=5224384 >>> total number of mallocs used during MatSetValues calls =0 >>> using I-node routines: found 18422 nodes, limit used is 5 >>> linear system matrix = precond matrix: >>> Mat Object: (fluid_complex_) 1 MPI processes >>> type: seqaij >>> rows=73688, cols=73688, bs=2 >>> total: nonzeros=5224384, allocated nonzeros=5224384 >>> total number of mallocs used during MatSetValues calls =0 >>> using I-node routines: found 18422 nodes, limit used is 5 >>> >>> Are other PC types expected to translate to the block matrices? >>> >>> I would appreciate any guidance. >>> >>> Thanks, >>> Manav >>> >> > From bhatiamanav at gmail.com Tue Nov 15 16:37:48 2016 From: bhatiamanav at gmail.com (Manav Bhatia) Date: Tue, 15 Nov 2016 16:37:48 -0600 Subject: [petsc-users] solving system with 2x2 block size In-Reply-To: <7492CF3F-B005-4D8E-8C39-88CC88DA915A@mcs.anl.gov> References: <8671D88A-904D-4AA9-B750-CE7976D8EE63@mcs.anl.gov> <68899839-F941-4AEC-9047-CAF6AF4F78E7@gmail.com> <7492CF3F-B005-4D8E-8C39-88CC88DA915A@mcs.anl.gov> Message-ID: <8A103CF0-6DB3-4705-8179-B4F1E24CB375@gmail.com> > On Nov 15, 2016, at 3:34 PM, Barry Smith wrote: > > In PETSc we call this 2x2 block Jacobi "point-block Jacobi" you can use the option -pc_type pbjacobi. The ILU() in PETSc can also be "point block", this is obtained with the usual -pc_type ilu (that is there is no different preconditioner name for ILU point block). To use all these things you need to make your matrix a BAIJ matrix (not an AIJ) and set its block size to 2. > The following code is how I setup the matrix in the code, and the provide the command line options for specifics. Is there anything I need to change about this to achieve a block size of 2 and then use the point block solvers? ierr = MatCreate(sys.comm().get(), &mat); CHKERRABORT(sys.comm().get(), ierr); ierr = MatSetSizes(mat, 2*m_l, 2*n_l, 2*my_m, 2*my_n); CHKERRABORT(sys.comm().get(), ierr); ierr = MatSetType(mat, MATAIJ); CHKERRABORT(sys.comm().get(), ierr); ierr = MatSetBlockSize(mat, 2); CHKERRABORT(sys.comm().get(), ierr); ierr = MatSeqAIJSetPreallocation(mat, 2*my_m, (PetscInt*)&complex_n_nz[0]); CHKERRABORT(sys.comm().get(), ierr); ierr = MatMPIAIJSetPreallocation(mat, 0, (PetscInt*)&complex_n_nz[0], 0, (PetscInt*)&complex_n_oz[0]); CHKERRABORT(sys.comm().get(), ierr); ierr = MatSeqBAIJSetPreallocation (mat, 2, 0, (PetscInt*)&n_nz[0]); CHKERRABORT(sys.comm().get(), ierr); ierr = MatMPIBAIJSetPreallocation (mat, 2, 0, (PetscInt*)&n_nz[0], 0, (PetscInt*)&n_oz[0]); CHKERRABORT(sys.comm().get(), ierr); ierr = MatSetOption(mat, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE); CHKERRABORT(sys.comm().get(), ierr); ierr = MatSetFromOptions(mat); CHKERRABORT(sys.comm().get(), ierr); > Have you tried solving the matrices as complex? Is there a reason you wish to reformulate them as real? The complex matrices come from a frequency domain formulation of compressible Euler equations using SU/PG method. This is a chunk in a larger part of the code that also needs to solve some real-valued problems before the complex solution. I need to keep a single code that does all this, so I am sticking with the real formulation. I used to do think with separate codes built for real-valued and complex-valued codes, and never had a problem applying the iterative solvers to the complex code. But now I need that done with the equivalent real formulation. > > The convergence of iterative methods (either with real or complex numbers) depends on the properties of the A and B (i.e. C) matrix. Where does the C matrix come from? There are many applications that result in complex matrices that are poorly conditioned for iterative methods. Given that I have had success with applying iterative solvers to the complex system (not in equivalent real-valued form), and following the discussion in the paper, my understanding is that some form of point preconditioner (not sure if this is the right terminology) would be able equivalent to applying the same preconditioner to the complex problem. (Please correct if this is not true). So, if it works for complex valued, can we get it to work for the equivalent form? -Manav -------------- next part -------------- An HTML attachment was scrubbed... URL: From bhatiamanav at gmail.com Tue Nov 15 17:16:35 2016 From: bhatiamanav at gmail.com (Manav Bhatia) Date: Tue, 15 Nov 2016 17:16:35 -0600 Subject: [petsc-users] solving system with 2x2 block size In-Reply-To: <7492CF3F-B005-4D8E-8C39-88CC88DA915A@mcs.anl.gov> References: <8671D88A-904D-4AA9-B750-CE7976D8EE63@mcs.anl.gov> <68899839-F941-4AEC-9047-CAF6AF4F78E7@gmail.com> <7492CF3F-B005-4D8E-8C39-88CC88DA915A@mcs.anl.gov> Message-ID: <7679C595-F64C-4141-8A23-925D3A35C629@gmail.com> I tried the options "-mat_type baij? and that seemed to change the type of matrix to BAIJ. I am now experimenting with various preconditioners (ILU, ASM, etc.), and things seem to be working fine so far. KSP Object:(fluid_complex_) 4 MPI processes type: gmres GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement GMRES: happy breakdown tolerance 1e-30 maximum iterations=10000, initial guess is zero tolerances: relative=1e-10, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object:(fluid_complex_) 4 MPI processes type: asm Additive Schwarz: total subdomain blocks = 4, amount of overlap = 1 Additive Schwarz: restriction/interpolation type - RESTRICT Local solve is same for all blocks, in the following KSP and PC objects: KSP Object: (fluid_complex_sub_) 1 MPI processes type: gmres GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement GMRES: happy breakdown tolerance 1e-30 maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: (fluid_complex_sub_) 1 MPI processes type: ilu ILU: out-of-place factorization 3 levels of fill tolerance for zero pivot 2.22045e-14 matrix ordering: natural factor fill ratio given 1., needed 2.32913 Factored matrix follows: Mat Object: 1 MPI processes type: seqbaij rows=294752, cols=294752, bs=2 package used to perform factorization: petsc total: nonzeros=49050496, allocated nonzeros=49050496 total number of mallocs used during MatSetValues calls =0 block size is 2 linear system matrix = precond matrix: Mat Object: (fluid_complex_) 1 MPI processes type: seqbaij rows=294752, cols=294752, bs=2 total: nonzeros=21059584, allocated nonzeros=21059584 total number of mallocs used during MatSetValues calls =0 block size is 2 linear system matrix = precond matrix: Mat Object: (fluid_complex_) 4 MPI processes type: mpibaij rows=1158728, cols=1158728, bs=2 total: nonzeros=83105344, allocated nonzeros=83266816 total number of mallocs used during MatSetValues calls =0 block size is 2 -Manav > On Nov 15, 2016, at 3:34 PM, Barry Smith wrote: > >> >> On Nov 15, 2016, at 3:23 PM, Manav Bhatia wrote: >> >> I have a complex system, (A + i B) (x + i y) = (f + ig), that I am trying to solve using real matrices: >> >> [A -B; B A ] [x; y] = [f; g] >> >> So, the 2x2 block is made of the real and imaginary component of each entry in the complex matrix. >> >> I am following the discussion in the following paper: >> >> DAY D. \& HEROUX M.A. 2001. Solving complex-valued linear systems via equivalent real formulations. \textit{SIAM Journal on Scientific Computing} 23: 480-498. >> >> Following is an excerpt. >> >> ********************************************************************************** >> >> The matrix K in the K formulation has a natural 2-by-2 block structure that can be exploited by using block entry data structures. Using the block entry features of these packages has the following benefits. >> >> ? Applying 2-by-2 block Jacobi scaling to K corresponds exactly to applying point Jacobi scaling to C. >> >> ? The block sparsity pattern of K exactly matches the point sparsity pattern of C. Thus any pattern-based preconditioners such as block ILU(l) applied to K correspond exactly to ILU(l) applied to C. See section 4 for definitions of block ILU(l) and ILU(l). >> >> ? Any drop tolerance-based complex preconditioner has a straightforward K formulation since the absolute value of a complex entry equals the scaled Frobenius norm of the corresponding block entry in K. >> >> ********************************************************************************** >> >> The paper additional outlines the challenges of the poor spectral properties of the equivalent real system. >> >> So, I am assembling the system with a 2x2 block, but am not sure how to best pick the right solver options in Petsc. >> >> I agree that I am getting confused by the ?block? nomenclature. Particularly, I am not sure how to reconcile the different notions with points 1 and 2 from the paper (noted above). > > In PETSc we call this 2x2 block Jacobi "point-block Jacobi" you can use the option -pc_type pbjacobi. The ILU() in PETSc can also be "point block", this is obtained with the usual -pc_type ilu (that is there is no different preconditioner name for ILU point block). To use all these things you need to make your matrix a BAIJ matrix (not an AIJ) and set its block size to 2. > > Have you tried solving the matrices as complex? Is there a reason you wish to reformulate them as real? > > The convergence of iterative methods (either with real or complex numbers) depends on the properties of the A and B (i.e. C) matrix. Where does the C matrix come from? There are many applications that result in complex matrices that are poorly conditioned for iterative methods. > > Barry > > > > >> >> Any guidance would be appreciated! >> >> Thanks, >> Manav >> >> >>> On Nov 15, 2016, at 3:12 PM, Barry Smith wrote: >>> >>> >>> We can help you if you provide more information about what the blocks represent in your problem. >>> >>> Do you have two degrees of freedom at each grid point? What physically are the two degrees of freedom. What equations are you solving? >>> >>> I think you may be mixing up the "matrix block size" of 2 with the blocks in "block Jacobi". Though both are called "block" they really don't have anything to do with each other. >>> >>> Barry >>> >>>> On Nov 15, 2016, at 3:03 PM, Manav Bhatia wrote: >>>> >>>> Hi, >>>> >>>> I am setting up a matrix with the following calls. The intent is to solve the system with a 2x2 block size. >>>> >>>> What combinations of KSP/PC will effectively translate to solving this block matrix system? >>>> >>>> I saw a discussion about bjacobi in the manual with the following calls (I omitted the prefixes from my actual command): >>>> -pc_type bjacobi -pc_bjacobi_blocks 2 -sub_ksp_type preonly -sub_pc_type lu -ksp_view >>>> >>>> which provides the following output: >>>> KSP Object:(fluid_complex_) 1 MPI processes >>>> type: gmres >>>> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement >>>> GMRES: happy breakdown tolerance 1e-30 >>>> maximum iterations=10000, initial guess is zero >>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>>> left preconditioning >>>> using PRECONDITIONED norm type for convergence test >>>> PC Object:(fluid_complex_) 1 MPI processes >>>> type: bjacobi >>>> block Jacobi: number of blocks = 2 >>>> Local solve is same for all blocks, in the following KSP and PC objects: >>>> KSP Object: (fluid_complex_sub_) 1 MPI processes >>>> type: preonly >>>> maximum iterations=10000, initial guess is zero >>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>>> left preconditioning >>>> using NONE norm type for convergence test >>>> PC Object: (fluid_complex_sub_) 1 MPI processes >>>> type: lu >>>> LU: out-of-place factorization >>>> tolerance for zero pivot 2.22045e-14 >>>> matrix ordering: nd >>>> factor fill ratio given 5., needed 5.70941 >>>> Factored matrix follows: >>>> Mat Object: 1 MPI processes >>>> type: seqaij >>>> rows=36844, cols=36844 >>>> package used to perform factorization: petsc >>>> total: nonzeros=14748816, allocated nonzeros=14748816 >>>> total number of mallocs used during MatSetValues calls =0 >>>> using I-node routines: found 9211 nodes, limit used is 5 >>>> linear system matrix = precond matrix: >>>> Mat Object: (fluid_complex_) 1 MPI processes >>>> type: seqaij >>>> rows=36844, cols=36844 >>>> total: nonzeros=2583248, allocated nonzeros=2583248 >>>> total number of mallocs used during MatSetValues calls =0 >>>> using I-node routines: found 9211 nodes, limit used is 5 >>>> linear system matrix = precond matrix: >>>> Mat Object: (fluid_complex_) 1 MPI processes >>>> type: seqaij >>>> rows=73688, cols=73688, bs=2 >>>> total: nonzeros=5224384, allocated nonzeros=5224384 >>>> total number of mallocs used during MatSetValues calls =0 >>>> using I-node routines: found 18422 nodes, limit used is 5 >>>> >>>> >>>> Likewise, I tried to use a more generic option: >>>> -mat_set_block_size 2 -ksp_type gmres -pc_type ilu -sub_ksp_type preonly -sub_pc_type lu -ksp_view >>>> >>>> with the following output: >>>> Linear fluid_complex_ solve converged due to CONVERGED_RTOL iterations 38 >>>> KSP Object:(fluid_complex_) 1 MPI processes >>>> type: gmres >>>> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement >>>> GMRES: happy breakdown tolerance 1e-30 >>>> maximum iterations=10000, initial guess is zero >>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>>> left preconditioning >>>> using PRECONDITIONED norm type for convergence test >>>> PC Object:(fluid_complex_) 1 MPI processes >>>> type: ilu >>>> ILU: out-of-place factorization >>>> 0 levels of fill >>>> tolerance for zero pivot 2.22045e-14 >>>> matrix ordering: natural >>>> factor fill ratio given 1., needed 1. >>>> Factored matrix follows: >>>> Mat Object: 1 MPI processes >>>> type: seqaij >>>> rows=73688, cols=73688, bs=2 >>>> package used to perform factorization: petsc >>>> total: nonzeros=5224384, allocated nonzeros=5224384 >>>> total number of mallocs used during MatSetValues calls =0 >>>> using I-node routines: found 18422 nodes, limit used is 5 >>>> linear system matrix = precond matrix: >>>> Mat Object: (fluid_complex_) 1 MPI processes >>>> type: seqaij >>>> rows=73688, cols=73688, bs=2 >>>> total: nonzeros=5224384, allocated nonzeros=5224384 >>>> total number of mallocs used during MatSetValues calls =0 >>>> using I-node routines: found 18422 nodes, limit used is 5 >>>> >>>> Are other PC types expected to translate to the block matrices? >>>> >>>> I would appreciate any guidance. >>>> >>>> Thanks, >>>> Manav -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Tue Nov 15 18:50:23 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Tue, 15 Nov 2016 18:50:23 -0600 Subject: [petsc-users] solving system with 2x2 block size In-Reply-To: <7679C595-F64C-4141-8A23-925D3A35C629@gmail.com> References: <8671D88A-904D-4AA9-B750-CE7976D8EE63@mcs.anl.gov> <68899839-F941-4AEC-9047-CAF6AF4F78E7@gmail.com> <7492CF3F-B005-4D8E-8C39-88CC88DA915A@mcs.anl.gov> <7679C595-F64C-4141-8A23-925D3A35C629@gmail.com> Message-ID: <0FE209D4-ACAB-47D1-9DD9-6A46D70A3CCD@mcs.anl.gov> Glad to hear it. > On Nov 15, 2016, at 5:16 PM, Manav Bhatia wrote: > > I tried the options "-mat_type baij? and that seemed to change the type of matrix to BAIJ. > > I am now experimenting with various preconditioners (ILU, ASM, etc.), and things seem to be working fine so far. > > KSP Object:(fluid_complex_) 4 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-10, absolute=1e-50, divergence=10000. > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object:(fluid_complex_) 4 MPI processes > type: asm > Additive Schwarz: total subdomain blocks = 4, amount of overlap = 1 > Additive Schwarz: restriction/interpolation type - RESTRICT > Local solve is same for all blocks, in the following KSP and PC objects: > KSP Object: (fluid_complex_sub_) 1 MPI processes > type: gmres > GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement > GMRES: happy breakdown tolerance 1e-30 > maximum iterations=10000, initial guess is zero > tolerances: relative=1e-05, absolute=1e-50, divergence=10000. > left preconditioning > using PRECONDITIONED norm type for convergence test > PC Object: (fluid_complex_sub_) 1 MPI processes > type: ilu > ILU: out-of-place factorization > 3 levels of fill > tolerance for zero pivot 2.22045e-14 > matrix ordering: natural > factor fill ratio given 1., needed 2.32913 > Factored matrix follows: > Mat Object: 1 MPI processes > type: seqbaij > rows=294752, cols=294752, bs=2 > package used to perform factorization: petsc > total: nonzeros=49050496, allocated nonzeros=49050496 > total number of mallocs used during MatSetValues calls =0 > block size is 2 > linear system matrix = precond matrix: > Mat Object: (fluid_complex_) 1 MPI processes > type: seqbaij > rows=294752, cols=294752, bs=2 > total: nonzeros=21059584, allocated nonzeros=21059584 > total number of mallocs used during MatSetValues calls =0 > block size is 2 > linear system matrix = precond matrix: > Mat Object: (fluid_complex_) 4 MPI processes > type: mpibaij > rows=1158728, cols=1158728, bs=2 > total: nonzeros=83105344, allocated nonzeros=83266816 > total number of mallocs used during MatSetValues calls =0 > block size is 2 > > > -Manav > > >> On Nov 15, 2016, at 3:34 PM, Barry Smith wrote: >> >>> >>> On Nov 15, 2016, at 3:23 PM, Manav Bhatia wrote: >>> >>> I have a complex system, (A + i B) (x + i y) = (f + ig), that I am trying to solve using real matrices: >>> >>> [A -B; B A ] [x; y] = [f; g] >>> >>> So, the 2x2 block is made of the real and imaginary component of each entry in the complex matrix. >>> >>> I am following the discussion in the following paper: >>> >>> DAY D. \& HEROUX M.A. 2001. Solving complex-valued linear systems via equivalent real formulations. \textit{SIAM Journal on Scientific Computing} 23: 480-498. >>> >>> Following is an excerpt. >>> >>> ********************************************************************************** >>> >>> The matrix K in the K formulation has a natural 2-by-2 block structure that can be exploited by using block entry data structures. Using the block entry features of these packages has the following benefits. >>> >>> ? Applying 2-by-2 block Jacobi scaling to K corresponds exactly to applying point Jacobi scaling to C. >>> >>> ? The block sparsity pattern of K exactly matches the point sparsity pattern of C. Thus any pattern-based preconditioners such as block ILU(l) applied to K correspond exactly to ILU(l) applied to C. See section 4 for definitions of block ILU(l) and ILU(l). >>> >>> ? Any drop tolerance-based complex preconditioner has a straightforward K formulation since the absolute value of a complex entry equals the scaled Frobenius norm of the corresponding block entry in K. >>> >>> ********************************************************************************** >>> >>> The paper additional outlines the challenges of the poor spectral properties of the equivalent real system. >>> >>> So, I am assembling the system with a 2x2 block, but am not sure how to best pick the right solver options in Petsc. >>> >>> I agree that I am getting confused by the ?block? nomenclature. Particularly, I am not sure how to reconcile the different notions with points 1 and 2 from the paper (noted above). >> >> In PETSc we call this 2x2 block Jacobi "point-block Jacobi" you can use the option -pc_type pbjacobi. The ILU() in PETSc can also be "point block", this is obtained with the usual -pc_type ilu (that is there is no different preconditioner name for ILU point block). To use all these things you need to make your matrix a BAIJ matrix (not an AIJ) and set its block size to 2. >> >> Have you tried solving the matrices as complex? Is there a reason you wish to reformulate them as real? >> >> The convergence of iterative methods (either with real or complex numbers) depends on the properties of the A and B (i.e. C) matrix. Where does the C matrix come from? There are many applications that result in complex matrices that are poorly conditioned for iterative methods. >> >> Barry >> >> >> >> >>> >>> Any guidance would be appreciated! >>> >>> Thanks, >>> Manav >>> >>> >>>> On Nov 15, 2016, at 3:12 PM, Barry Smith wrote: >>>> >>>> >>>> We can help you if you provide more information about what the blocks represent in your problem. >>>> >>>> Do you have two degrees of freedom at each grid point? What physically are the two degrees of freedom. What equations are you solving? >>>> >>>> I think you may be mixing up the "matrix block size" of 2 with the blocks in "block Jacobi". Though both are called "block" they really don't have anything to do with each other. >>>> >>>> Barry >>>> >>>>> On Nov 15, 2016, at 3:03 PM, Manav Bhatia wrote: >>>>> >>>>> Hi, >>>>> >>>>> I am setting up a matrix with the following calls. The intent is to solve the system with a 2x2 block size. >>>>> >>>>> What combinations of KSP/PC will effectively translate to solving this block matrix system? >>>>> >>>>> I saw a discussion about bjacobi in the manual with the following calls (I omitted the prefixes from my actual command): >>>>> -pc_type bjacobi -pc_bjacobi_blocks 2 -sub_ksp_type preonly -sub_pc_type lu -ksp_view >>>>> >>>>> which provides the following output: >>>>> KSP Object:(fluid_complex_) 1 MPI processes >>>>> type: gmres >>>>> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement >>>>> GMRES: happy breakdown tolerance 1e-30 >>>>> maximum iterations=10000, initial guess is zero >>>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>>>> left preconditioning >>>>> using PRECONDITIONED norm type for convergence test >>>>> PC Object:(fluid_complex_) 1 MPI processes >>>>> type: bjacobi >>>>> block Jacobi: number of blocks = 2 >>>>> Local solve is same for all blocks, in the following KSP and PC objects: >>>>> KSP Object: (fluid_complex_sub_) 1 MPI processes >>>>> type: preonly >>>>> maximum iterations=10000, initial guess is zero >>>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>>>> left preconditioning >>>>> using NONE norm type for convergence test >>>>> PC Object: (fluid_complex_sub_) 1 MPI processes >>>>> type: lu >>>>> LU: out-of-place factorization >>>>> tolerance for zero pivot 2.22045e-14 >>>>> matrix ordering: nd >>>>> factor fill ratio given 5., needed 5.70941 >>>>> Factored matrix follows: >>>>> Mat Object: 1 MPI processes >>>>> type: seqaij >>>>> rows=36844, cols=36844 >>>>> package used to perform factorization: petsc >>>>> total: nonzeros=14748816, allocated nonzeros=14748816 >>>>> total number of mallocs used during MatSetValues calls =0 >>>>> using I-node routines: found 9211 nodes, limit used is 5 >>>>> linear system matrix = precond matrix: >>>>> Mat Object: (fluid_complex_) 1 MPI processes >>>>> type: seqaij >>>>> rows=36844, cols=36844 >>>>> total: nonzeros=2583248, allocated nonzeros=2583248 >>>>> total number of mallocs used during MatSetValues calls =0 >>>>> using I-node routines: found 9211 nodes, limit used is 5 >>>>> linear system matrix = precond matrix: >>>>> Mat Object: (fluid_complex_) 1 MPI processes >>>>> type: seqaij >>>>> rows=73688, cols=73688, bs=2 >>>>> total: nonzeros=5224384, allocated nonzeros=5224384 >>>>> total number of mallocs used during MatSetValues calls =0 >>>>> using I-node routines: found 18422 nodes, limit used is 5 >>>>> >>>>> >>>>> Likewise, I tried to use a more generic option: >>>>> -mat_set_block_size 2 -ksp_type gmres -pc_type ilu -sub_ksp_type preonly -sub_pc_type lu -ksp_view >>>>> >>>>> with the following output: >>>>> Linear fluid_complex_ solve converged due to CONVERGED_RTOL iterations 38 >>>>> KSP Object:(fluid_complex_) 1 MPI processes >>>>> type: gmres >>>>> GMRES: restart=30, using Classical (unmodified) Gram-Schmidt Orthogonalization with no iterative refinement >>>>> GMRES: happy breakdown tolerance 1e-30 >>>>> maximum iterations=10000, initial guess is zero >>>>> tolerances: relative=1e-05, absolute=1e-50, divergence=10000. >>>>> left preconditioning >>>>> using PRECONDITIONED norm type for convergence test >>>>> PC Object:(fluid_complex_) 1 MPI processes >>>>> type: ilu >>>>> ILU: out-of-place factorization >>>>> 0 levels of fill >>>>> tolerance for zero pivot 2.22045e-14 >>>>> matrix ordering: natural >>>>> factor fill ratio given 1., needed 1. >>>>> Factored matrix follows: >>>>> Mat Object: 1 MPI processes >>>>> type: seqaij >>>>> rows=73688, cols=73688, bs=2 >>>>> package used to perform factorization: petsc >>>>> total: nonzeros=5224384, allocated nonzeros=5224384 >>>>> total number of mallocs used during MatSetValues calls =0 >>>>> using I-node routines: found 18422 nodes, limit used is 5 >>>>> linear system matrix = precond matrix: >>>>> Mat Object: (fluid_complex_) 1 MPI processes >>>>> type: seqaij >>>>> rows=73688, cols=73688, bs=2 >>>>> total: nonzeros=5224384, allocated nonzeros=5224384 >>>>> total number of mallocs used during MatSetValues calls =0 >>>>> using I-node routines: found 18422 nodes, limit used is 5 >>>>> >>>>> Are other PC types expected to translate to the block matrices? >>>>> >>>>> I would appreciate any guidance. >>>>> >>>>> Thanks, >>>>> Manav > From Mohammadali.Beheshti at uhn.ca Wed Nov 16 10:47:38 2016 From: Mohammadali.Beheshti at uhn.ca (Beheshti, Mohammadali) Date: Wed, 16 Nov 2016 16:47:38 +0000 Subject: [petsc-users] Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range Message-ID: Hi, I am running a simulation using a software that solves a FEM problem. My job script is as follows: #!/bin/bash #PBS -N myjob #PBS -l nodes=1:ppn=8 #PBS -l walltime=120:00:00 #PBS -l mem=32000MB module load openmpi/2.0.0 cd /cluster/home/t48263uhn/Carp/PlosOneData/ mpirun -np 8 carp.debug.petsc.pt +F /cluster/home/t48263uhn/Carp/PlosOneData/parameters_ECG_adjust.par When I run this job I get following PETSC error: [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [5]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [5]PETSC ERROR: likely location of problem given in stack below [5]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [5]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [5]PETSC ERROR: INSTEAD the line number of the start of the function [5]PETSC ERROR: is given. [5]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [5]PETSC ERROR: Signal received [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: Petsc Release Version 3.7.3, Jul, 24, 2016 [5]PETSC ERROR: carp.debug.petsc.pt on a linux-gnu named node46.uhnh4h.cluster by t48263uhn Wed Nov 16 10:50:03 2016 [5]PETSC ERROR: Configure options --with-petsc-arch=linux-gnu --with-debugging=yes --with-mpi-dir=/cluster/tools/software/openmpi/2.0.0/ --download-ml=yes --download-fblaspack=yes -PETSC_ARCH=linux-gnu --download-superlu_dist=yes --download-superlu=yes --download-hypre=yes --download-mumps=yes --download-scalapack=yes --download-blacs=yes --download-hdf5=yes --download-metis=yes --download-parmetis=yes --download-pastix=yes --download-ptscotch=yes --download-sundials=yes --with-shared-libraries=1 [5]PETSC ERROR: #1 User provided function() line 0 in unknown file I appreciate any help in finding the cause of the error. Best Regards, Ali This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this e-mail may not be that of the organization. From bsmith at mcs.anl.gov Wed Nov 16 11:36:54 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 16 Nov 2016 11:36:54 -0600 Subject: [petsc-users] Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range In-Reply-To: References: Message-ID: <33FA1E2E-C8AA-4DD9-B7D4-66A1B1318388@mcs.anl.gov> Segmentation Violation's are due to illegal memory access. They can be found with a debugger or with valgrind. There really is no other way. Debug on a workstation not on a cluster with a batch system. Barry > On Nov 16, 2016, at 10:47 AM, Beheshti, Mohammadali wrote: > > Hi, > > I am running a simulation using a software that solves a FEM problem. My job script is as follows: > > #!/bin/bash > #PBS -N myjob > #PBS -l nodes=1:ppn=8 > #PBS -l walltime=120:00:00 > #PBS -l mem=32000MB > module load openmpi/2.0.0 > cd /cluster/home/t48263uhn/Carp/PlosOneData/ > mpirun -np 8 carp.debug.petsc.pt +F /cluster/home/t48263uhn/Carp/PlosOneData/parameters_ECG_adjust.par > > When I run this job I get following PETSC error: > > [5]PETSC ERROR: ------------------------------------------------------------------------ > [5]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range > [5]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > [5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors > [5]PETSC ERROR: likely location of problem given in stack below > [5]PETSC ERROR: --------------------- Stack Frames ------------------------------------ > [5]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, > [5]PETSC ERROR: INSTEAD the line number of the start of the function > [5]PETSC ERROR: is given. > [5]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- > [5]PETSC ERROR: Signal received > [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. > [5]PETSC ERROR: Petsc Release Version 3.7.3, Jul, 24, 2016 > [5]PETSC ERROR: carp.debug.petsc.pt on a linux-gnu named node46.uhnh4h.cluster by t48263uhn Wed Nov 16 10:50:03 2016 > [5]PETSC ERROR: Configure options --with-petsc-arch=linux-gnu --with-debugging=yes --with-mpi-dir=/cluster/tools/software/openmpi/2.0.0/ --download-ml=yes --download-fblaspack=yes -PETSC_ARCH=linux-gnu --download-superlu_dist=yes --download-superlu=yes --download-hypre=yes --download-mumps=yes --download-scalapack=yes --download-blacs=yes --download-hdf5=yes --download-metis=yes --download-parmetis=yes --download-pastix=yes --download-ptscotch=yes --download-sundials=yes --with-shared-libraries=1 > [5]PETSC ERROR: #1 User provided function() line 0 in unknown file > > I appreciate any help in finding the cause of the error. > > Best Regards, > > Ali > > This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. > Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. > If you have received this e-mail in error, please contact the sender and delete all copies. > Opinions, conclusions or other information contained in this e-mail may not be that of the organization. > From leejearl at 126.com Wed Nov 16 20:17:57 2016 From: leejearl at 126.com (leejearl) Date: Thu, 17 Nov 2016 10:17:57 +0800 Subject: [petsc-users] A quest about the coordinate and normal of faces at boundaries Message-ID: <087dcd19-9511-c037-22a9-f144490ddd79@126.com> Hi, all: I am struggling to use PETSc for some numerical problems. I found that the coordinate and normal of faces at the boundary are all zeros. It seems that PETSc does not compute them. How can I get the coordinate and normal of faces at boundaries in PETSc, or must I compute it by myself? Thanks leejearl From knepley at gmail.com Wed Nov 16 20:35:25 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 16 Nov 2016 20:35:25 -0600 Subject: [petsc-users] A quest about the coordinate and normal of faces at boundaries In-Reply-To: <087dcd19-9511-c037-22a9-f144490ddd79@126.com> References: <087dcd19-9511-c037-22a9-f144490ddd79@126.com> Message-ID: On Wed, Nov 16, 2016 at 8:17 PM, leejearl wrote: > Hi, all: > > I am struggling to use PETSc for some numerical problems. I found that > the coordinate and normal of > > faces at the boundary are all zeros. It seems that PETSc does not compute > them. How can I get the coordinate > > and normal of faces at boundaries in PETSc, or must I compute it by myself? > Where did you think the data would be, or how are you trying to get this? You can compute it using http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMPlexComputeCellGeometryFVM.html Matt > Thanks > > leejearl > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From ibarletta at inogs.it Thu Nov 17 06:28:32 2016 From: ibarletta at inogs.it (Ivano Barletta) Date: Thu, 17 Nov 2016 13:28:32 +0100 Subject: [petsc-users] Suspect Poor Performance of Petsc Message-ID: Dear Petsc users My aim is to replace the linear solver of an ocean model with Petsc, to see if is there place for improvement of performances. The linear system solves an elliptic equation, and the former solver is a Preconditioned Conjugate Gradient, with a simple diagonal preconditioning. The size of the matrix is roughly 27000 Prior to nest Petsc into the model, I've built a simple test case, where the same system is solved by the two of the methods I've noticed that, compared to the former solver (pcg), Petsc performance results are quite disappointing Pcg does not scale that much, but its solution time remains below 4-5e-2 seconds. Petsc solution time, instead, the more cpu I use the more increases (see output of -log_view in attachment ). I've only tried to change the ksp solver ( gmres, cg, and bcgs with no improvement) and preconditioning is the default of Petsc. Maybe these options don't suit my problem very well, but I don't think this alone justifies this strange behavior I've tried to provide d_nnz and o_nnz for the exact number of nonzeros in the Preallocation phase, but no gain even in this case. At this point, my question is, what am I doing wrong? Do you think that the problem is too small for the Petsc to have any effect? Thanks in advance Ivano -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: petsc_time_8 Type: application/octet-stream Size: 15436 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: petsc_time_4 Type: application/octet-stream Size: 15436 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: petsc_time_16 Type: application/octet-stream Size: 15438 bytes Desc: not available URL: From robert.annewandter at opengosim.com Thu Nov 17 08:32:24 2016 From: robert.annewandter at opengosim.com (Robert Annewandter) Date: Thu, 17 Nov 2016 14:32:24 +0000 Subject: [petsc-users] Control Output of '-ksp_view_mat binary' Message-ID: An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Nov 17 09:35:43 2016 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 17 Nov 2016 09:35:43 -0600 Subject: [petsc-users] Control Output of '-ksp_view_mat binary' In-Reply-To: References: Message-ID: On Thu, Nov 17, 2016 at 8:32 AM, Robert Annewandter < robert.annewandter at opengosim.com> wrote: > Hi, > > Is there a way to fine tune '-ksp_view_mat binary' so it only gives me an > output at a defined time? > > I'm implementing a Two-Stage Preconditioner for PFLOTRAN (a subsurface > flow and transport simulator which uses PETsc). Currently I like to compare > convergence of the preconditioning in PFLOTRAN against a prototyped version > in MATLAB. In PFLOTRAN I export the Jacobian, and residual before they get > handed-over to PETsc, which get imported in MATLAB to do the Two-Stage > Preconditioning. > > However, I know I can do exports closer to PETsc with the options > '-ksp_view_mat binary' and '-ksp_view_rhs binary'. Unfortunately I get > outputs for the whole simulation in one file, instead of only at a > well-defined Newton-Raphson iteration (as done in PFLOTRAN). > > Is there a way to tell PETsc with above options when to export the > Jacobian and residual? > > Any pointers much appreciated! > It sounds like you could give the particular solve you want to look at a prefix: http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/KSP/KSPSetOptionsPrefix.html and then give -myprefix_ksp_view_mat binary Thanks, Matt > Thank you! > Robert > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Thu Nov 17 09:42:05 2016 From: knepley at gmail.com (Matthew Knepley) Date: Thu, 17 Nov 2016 09:42:05 -0600 Subject: [petsc-users] Suspect Poor Performance of Petsc In-Reply-To: References: Message-ID: On Thu, Nov 17, 2016 at 6:28 AM, Ivano Barletta wrote: > Dear Petsc users > > My aim is to replace the linear solver of an ocean model with Petsc, to > see if is > there place for improvement of performances. > > The linear system solves an elliptic equation, and the former solver is a > Preconditioned Conjugate Gradient, with a simple diagonal preconditioning. > The size of the matrix is roughly 27000 > > Prior to nest Petsc into the model, I've built a simple test case, where > the same system is solved by the two of the methods > > I've noticed that, compared to the former solver (pcg), Petsc performance > results are quite disappointing > For any solver performance questions, we need to see the output of -ksp_monitor -ksp_view -ksp_converged_reason -log_view If you are comparing to another solver, we also need to know exactly what is being done there, including how the convergence tolerance is implemented. This problem is extremely small. I would be really surprised if you can beat a direct solver like SuperLU (--download-superlu) and parallelism should be largely ineffective. However, that depends on how accurately you are solving the system. Thanks, Matt > Pcg does not scale that much, but its solution time remains below > 4-5e-2 seconds. > Petsc solution time, instead, the more cpu I use the more increases > (see output of -log_view in attachment ). > > I've only tried to change the ksp solver ( gmres, cg, and bcgs with no > improvement) and preconditioning is the default of Petsc. Maybe these > options don't suit my problem very well, but I don't think this alone > justifies this strange behavior > > I've tried to provide d_nnz and o_nnz for the exact number of nonzeros in > the > Preallocation phase, but no gain even in this case. > > At this point, my question is, what am I doing wrong? > > Do you think that the problem is too small for the Petsc to > have any effect? > > Thanks in advance > Ivano > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Thu Nov 17 10:05:29 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 17 Nov 2016 10:05:29 -0600 Subject: [petsc-users] Control Output of '-ksp_view_mat binary' In-Reply-To: References: Message-ID: You can also call MatView(jac,PETSC_VIEWER_BINARY_WORLD); at the location where you compute the Jacobian based on the iteration number etc > On Nov 17, 2016, at 9:35 AM, Matthew Knepley wrote: > > On Thu, Nov 17, 2016 at 8:32 AM, Robert Annewandter wrote: > Hi, > > Is there a way to fine tune '-ksp_view_mat binary' so it only gives me an output at a defined time? > > I'm implementing a Two-Stage Preconditioner for PFLOTRAN (a subsurface flow and transport simulator which uses PETsc). Currently I like to compare convergence of the preconditioning in PFLOTRAN against a prototyped version in MATLAB. In PFLOTRAN I export the Jacobian, and residual before they get handed-over to PETsc, which get imported in MATLAB to do the Two-Stage Preconditioning. > > However, I know I can do exports closer to PETsc with the options '-ksp_view_mat binary' and '-ksp_view_rhs binary'. Unfortunately I get outputs for the whole simulation in one file, instead of only at a well-defined Newton-Raphson iteration (as done in PFLOTRAN). > > Is there a way to tell PETsc with above options when to export the Jacobian and residual? > > Any pointers much appreciated! > > It sounds like you could give the particular solve you want to look at a prefix: > > http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/KSP/KSPSetOptionsPrefix.html > > and then give > > -myprefix_ksp_view_mat binary > > Thanks, > > Matt > > Thank you! > Robert > > > > -- > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. > -- Norbert Wiener From bsmith at mcs.anl.gov Thu Nov 17 10:24:20 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 17 Nov 2016 10:24:20 -0600 Subject: [petsc-users] Suspect Poor Performance of Petsc In-Reply-To: References: Message-ID: <6E5C1CE6-FDD6-4DCF-A1B9-BF8AC62D3E3D@mcs.anl.gov> Ivano, I have cut and pasted the relevant parts of the logs below and removed a few irrelevent lines to make the analysis simplier. There is a lot of bad stuff going on that is hurting performance. 1) The percentage of the time in the linear solve is getting lower going from 79% with 4 processes to 54 % with 16 processes. This means the rest of the code is not scaling well, likely that is generating the matrix. How are you getting the matrix into the program? If you are reading it as ASCII (somehow in parallel?) you should not do that. You should use MatLoad() to get the matrix in efficiently (see for example src/ksp/ksp/examples/tutorials/ex10.c). To make the analysis better you need to add around the KSP solve. ierr = PetscLogStageRegister("Solve", &stage);CHKERRQ(ierr); ierr = PetscLogStagePush(stage);CHKERRQ(ierr); ierr = KSPSolve(ksp,bb,xx);CHKERRQ(ierr); ierr = PetscLogStagePop();CHKERRQ(ierr); and rerun the three cases. 2) The load balance is bad even for four processes. For example it is 1.3 in the MatSolve, it should be really close to 1.0. How are you dividing the matrix up between processes? 3) It is spending a HUGE amount of time in VecNorm(), 26 % on 4 processes and 42% on 16 processes. This could be partially or completely due to load balancing but might have other issues. Run with -ksp_norm_type natural in your new sets of runs Also always run with -ksp_type cg ; it makes no sense to use gmres or the other KSP methods. Eagerly awaiting your response. Barry ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ MatMult 75 1.0 4.1466e-03 1.2 3.70e+06 1.6 6.0e+02 4.4e+02 0.0e+00 13 25 97 99 0 13 25 97 99 0 2868 MatSolve 75 1.0 6.1995e-03 1.3 3.68e+06 1.6 0.0e+00 0.0e+00 0.0e+00 19 24 0 0 0 19 24 0 0 0 1908 MatLUFactorNum 1 1.0 3.6880e-04 1.4 5.81e+04 1.7 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 499 MatILUFactorSym 1 1.0 1.7040e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 MatAssemblyBegin 1 1.0 2.5113e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 MatAssemblyEnd 1 1.0 1.8365e-03 1.0 0.00e+00 0.0 1.6e+01 1.1e+02 8.0e+00 6 0 3 1 3 6 0 3 1 3 0 MatGetRowIJ 1 1.0 2.2865e-0517.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetOrdering 1 1.0 6.1687e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 150 1.0 3.2991e-03 2.7 2.05e+06 1.0 0.0e+00 0.0e+00 1.5e+02 8 17 0 0 62 8 17 0 0 62 2466 VecNorm 76 1.0 7.5034e-03 1.0 1.04e+06 1.0 0.0e+00 0.0e+00 7.6e+01 26 9 0 0 31 26 9 0 0 31 549 VecSet 77 1.0 2.4495e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 VecAXPY 150 1.0 7.8158e-04 1.1 2.05e+06 1.0 0.0e+00 0.0e+00 0.0e+00 3 17 0 0 0 3 17 0 0 0 10409 VecAYPX 74 1.0 6.8849e-04 1.0 1.01e+06 1.0 0.0e+00 0.0e+00 0.0e+00 2 8 0 0 0 2 8 0 0 0 5829 VecScatterBegin 75 1.0 1.7794e-04 1.2 0.00e+00 0.0 6.0e+02 4.4e+02 0.0e+00 1 0 97 99 0 1 0 97 99 0 0 VecScatterEnd 75 1.0 2.1674e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 KSPSetUp 2 1.0 1.4922e-04 4.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 2.2833e-02 1.0 1.36e+07 1.3 6.0e+02 4.4e+02 2.3e+02 79100 97 99 93 79100 97 99 93 2116 PCSetUp 2 1.0 1.0116e-03 1.2 5.81e+04 1.7 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 182 PCSetUpOnBlocks 1 1.0 6.2872e-04 1.2 5.81e+04 1.7 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 293 PCApply 75 1.0 7.2835e-03 1.3 3.68e+06 1.6 0.0e+00 0.0e+00 0.0e+00 22 24 0 0 0 22 24 0 0 0 1624 MatMult 77 1.0 3.5985e-03 1.2 2.18e+06 2.4 1.5e+03 3.8e+02 0.0e+00 1 25 97 99 0 1 25 97 99 0 3393 MatSolve 77 1.0 3.8145e-03 1.4 2.16e+06 2.4 0.0e+00 0.0e+00 0.0e+00 1 24 0 0 0 1 24 0 0 0 3163 MatLUFactorNum 1 1.0 9.3037e-04 1.9 3.37e+04 2.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 196 MatILUFactorSym 1 1.0 2.1638e-03 3.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyBegin 1 1.0 1.9466e-03 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 MatAssemblyEnd 1 1.0 2.1234e-02 1.0 0.00e+00 0.0 4.0e+01 9.6e+01 8.0e+00 8 0 3 1 3 8 0 3 1 3 0 MatGetRowIJ 1 1.0 1.0025e-0312.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetOrdering 1 1.0 1.4848e-03 2.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 154 1.0 4.1220e-03 1.8 1.06e+06 1.0 0.0e+00 0.0e+00 1.5e+02 1 17 0 0 62 1 17 0 0 62 2026 VecNorm 78 1.0 1.5534e-01 1.0 5.38e+05 1.0 0.0e+00 0.0e+00 7.8e+01 60 9 0 0 31 60 9 0 0 31 27 VecSet 79 1.0 1.5549e-03 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 154 1.0 8.0559e-04 1.2 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 17 0 0 0 0 17 0 0 0 10368 VecAYPX 76 1.0 5.8600e-04 1.4 5.24e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 7034 VecScatterBegin 77 1.0 8.4793e-04 3.7 0.00e+00 0.0 1.5e+03 3.8e+02 0.0e+00 0 0 97 99 0 0 0 97 99 0 0 VecScatterEnd 77 1.0 7.7019e-04 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 2 1.0 1.1451e-03 3.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.8231e-01 1.0 7.49e+06 1.5 1.5e+03 3.8e+02 2.3e+02 71100 97 99 93 71100 97 99 94 272 PCSetUp 2 1.0 1.0994e-02 1.1 3.37e+04 2.6 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 17 PCSetUpOnBlocks 1 1.0 4.9001e-03 1.2 3.37e+04 2.6 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 37 PCApply 77 1.0 5.2556e-03 1.3 2.16e+06 2.4 0.0e+00 0.0e+00 0.0e+00 2 24 0 0 0 2 24 0 0 0 2296 MatMult 78 1.0 1.2783e-02 4.8 1.16e+06 3.9 3.5e+03 2.5e+02 0.0e+00 1 25 98 99 0 1 25 98 99 0 968 MatSolve 78 1.0 1.4015e-0214.0 1.14e+06 3.9 0.0e+00 0.0e+00 0.0e+00 0 24 0 0 0 0 24 0 0 0 867 MatLUFactorNum 1 1.0 1.0275e-0240.1 1.76e+04 4.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 18 MatILUFactorSym 1 1.0 2.0541e-0213.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 MatAssemblyBegin 1 1.0 2.1347e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 MatAssemblyEnd 1 1.0 1.5367e-01 1.1 0.00e+00 0.0 9.0e+01 6.5e+01 8.0e+00 12 0 2 1 3 12 0 2 1 3 0 MatGetRowIJ 1 1.0 1.2759e-02159.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetOrdering 1 1.0 1.8199e-0221.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 VecTDot 156 1.0 1.3093e-02 6.1 5.45e+05 1.0 0.0e+00 0.0e+00 1.6e+02 1 17 0 0 62 1 17 0 0 62 646 VecNorm 79 1.0 5.2373e-01 1.0 2.76e+05 1.0 0.0e+00 0.0e+00 7.9e+01 42 9 0 0 31 42 9 0 0 31 8 VecSet 80 1.0 2.1215e-0229.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 VecAXPY 156 1.0 2.5283e-03 1.7 5.45e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 17 0 0 0 0 17 0 0 0 3346 VecAYPX 77 1.0 1.5826e-03 2.6 2.69e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2639 VecScatterBegin 78 1.0 7.8273e-0326.8 0.00e+00 0.0 3.5e+03 2.5e+02 0.0e+00 0 0 98 99 0 0 0 98 99 0 0 VecScatterEnd 78 1.0 4.8130e-0344.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 2 1.0 1.9786e-0232.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 KSPSolve 1 1.0 6.7540e-01 1.0 3.87e+06 1.8 3.5e+03 2.5e+02 2.4e+02 54100 98 99 93 54100 98 99 94 74 PCSetUp 2 1.0 9.6539e-02 1.2 1.76e+04 4.5 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 2 PCSetUpOnBlocks 1 1.0 5.1548e-02 1.8 1.76e+04 4.5 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 4 PCApply 78 1.0 1.7296e-02 5.3 1.14e+06 3.9 0.0e+00 0.0e+00 0.0e+00 1 24 0 0 0 1 24 0 0 0 702 ------------------------------------------------------------------------------------------------------------------------ > On Nov 17, 2016, at 6:28 AM, Ivano Barletta wrote: > > Dear Petsc users > > My aim is to replace the linear solver of an ocean model with Petsc, to see if is > there place for improvement of performances. > > The linear system solves an elliptic equation, and the former solver is a > Preconditioned Conjugate Gradient, with a simple diagonal preconditioning. > The size of the matrix is roughly 27000 > > Prior to nest Petsc into the model, I've built a simple test case, where > the same system is solved by the two of the methods > > I've noticed that, compared to the former solver (pcg), Petsc performance > results are quite disappointing > > Pcg does not scale that much, but its solution time remains below > 4-5e-2 seconds. > Petsc solution time, instead, the more cpu I use the more increases > (see output of -log_view in attachment ). > > I've only tried to change the ksp solver ( gmres, cg, and bcgs with no > improvement) and preconditioning is the default of Petsc. Maybe these > options don't suit my problem very well, but I don't think this alone > justifies this strange behavior > > I've tried to provide d_nnz and o_nnz for the exact number of nonzeros in the > Preallocation phase, but no gain even in this case. > > At this point, my question is, what am I doing wrong? > > Do you think that the problem is too small for the Petsc to > have any effect? > > Thanks in advance > Ivano > > From robert.annewandter at opengosim.com Thu Nov 17 10:30:34 2016 From: robert.annewandter at opengosim.com (Robert Annewandter) Date: Thu, 17 Nov 2016 16:30:34 +0000 Subject: [petsc-users] Control Output of '-ksp_view_mat binary' In-Reply-To: References: Message-ID: <621fc6ca-54ac-093b-f368-c66741f0bd4e@opengosim.com> An HTML attachment was scrubbed... URL: From ibarletta at inogs.it Thu Nov 17 12:25:46 2016 From: ibarletta at inogs.it (Ivano Barletta) Date: Thu, 17 Nov 2016 19:25:46 +0100 Subject: [petsc-users] Suspect Poor Performance of Petsc In-Reply-To: <6E5C1CE6-FDD6-4DCF-A1B9-BF8AC62D3E3D@mcs.anl.gov> References: <6E5C1CE6-FDD6-4DCF-A1B9-BF8AC62D3E3D@mcs.anl.gov> Message-ID: Thank you for your replies I've carried out 3 new tests with 4,8,16 cores, adding the code lines suggested by Barry (logs in attachment ) Still lack of scaling persist, but maybe is just related to the size of the problem. As far as balancing concerns, there's not very much I can do, I believe it depends on land/sea points, (on land matrix coefficients are zero), it's something I cannot control. By the way, I mean to carry some test on higher resolution configurations, with a bigger problem size Kind Regards Ivano 2016-11-17 17:24 GMT+01:00 Barry Smith : > > Ivano, > > I have cut and pasted the relevant parts of the logs below and removed a > few irrelevent lines to make the analysis simplier. > > There is a lot of bad stuff going on that is hurting performance. > > 1) The percentage of the time in the linear solve is getting lower going > from 79% with 4 processes to 54 % with 16 processes. This means the rest of > the code is not scaling well, likely that is generating the matrix. How are > you getting the matrix into the program? If you are reading it as ASCII > (somehow in parallel?) you should not do that. You should use MatLoad() to > get the matrix in efficiently (see for example src/ksp/ksp/examples/ > tutorials/ex10.c). > > To make the analysis better you need to add around the KSP solve. > > ierr = PetscLogStageRegister("Solve", &stage);CHKERRQ(ierr); > ierr = PetscLogStagePush(stage);CHKERRQ(ierr); > ierr = KSPSolve(ksp,bb,xx);CHKERRQ(ierr); > ierr = PetscLogStagePop();CHKERRQ(ierr); > > and rerun the three cases. > > 2) The load balance is bad even for four processes. For example it is 1.3 > in the MatSolve, it should be really close to 1.0. How are you dividing the > matrix up between processes? > > 3) It is spending a HUGE amount of time in VecNorm(), 26 % on 4 processes > and 42% on 16 processes. This could be partially or completely due to load > balancing but might have other issues. > > Run with -ksp_norm_type natural in your new sets of runs > > Also always run with -ksp_type cg ; it makes no sense to use gmres or the > other KSP methods. > > Eagerly awaiting your response. > > Barry > > > > ------------------------------------------------------------ > ------------------------------------------------------------ > Event Count Time (sec) Flops > --- Global --- --- Stage --- Total > Max Ratio Max Ratio Max Ratio Mess Avg len > Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s > ------------------------------------------------------------ > ------------------------------------------------------------ > > MatMult 75 1.0 4.1466e-03 1.2 3.70e+06 1.6 6.0e+02 4.4e+02 > 0.0e+00 13 25 97 99 0 13 25 97 99 0 2868 > MatSolve 75 1.0 6.1995e-03 1.3 3.68e+06 1.6 0.0e+00 0.0e+00 > 0.0e+00 19 24 0 0 0 19 24 0 0 0 1908 > MatLUFactorNum 1 1.0 3.6880e-04 1.4 5.81e+04 1.7 0.0e+00 0.0e+00 > 0.0e+00 1 0 0 0 0 1 0 0 0 0 499 > MatILUFactorSym 1 1.0 1.7040e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > MatAssemblyBegin 1 1.0 2.5113e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 > 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 > MatAssemblyEnd 1 1.0 1.8365e-03 1.0 0.00e+00 0.0 1.6e+01 1.1e+02 > 8.0e+00 6 0 3 1 3 6 0 3 1 3 0 > MatGetRowIJ 1 1.0 2.2865e-0517.8 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatGetOrdering 1 1.0 6.1687e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecTDot 150 1.0 3.2991e-03 2.7 2.05e+06 1.0 0.0e+00 0.0e+00 > 1.5e+02 8 17 0 0 62 8 17 0 0 62 2466 > VecNorm 76 1.0 7.5034e-03 1.0 1.04e+06 1.0 0.0e+00 0.0e+00 > 7.6e+01 26 9 0 0 31 26 9 0 0 31 549 > VecSet 77 1.0 2.4495e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > VecAXPY 150 1.0 7.8158e-04 1.1 2.05e+06 1.0 0.0e+00 0.0e+00 > 0.0e+00 3 17 0 0 0 3 17 0 0 0 10409 > VecAYPX 74 1.0 6.8849e-04 1.0 1.01e+06 1.0 0.0e+00 0.0e+00 > 0.0e+00 2 8 0 0 0 2 8 0 0 0 5829 > VecScatterBegin 75 1.0 1.7794e-04 1.2 0.00e+00 0.0 6.0e+02 4.4e+02 > 0.0e+00 1 0 97 99 0 1 0 97 99 0 0 > VecScatterEnd 75 1.0 2.1674e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > KSPSetUp 2 1.0 1.4922e-04 4.0 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSolve 1 1.0 2.2833e-02 1.0 1.36e+07 1.3 6.0e+02 4.4e+02 > 2.3e+02 79100 97 99 93 79100 97 99 93 2116 > PCSetUp 2 1.0 1.0116e-03 1.2 5.81e+04 1.7 0.0e+00 0.0e+00 > 0.0e+00 3 0 0 0 0 3 0 0 0 0 182 > PCSetUpOnBlocks 1 1.0 6.2872e-04 1.2 5.81e+04 1.7 0.0e+00 0.0e+00 > 0.0e+00 2 0 0 0 0 2 0 0 0 0 293 > PCApply 75 1.0 7.2835e-03 1.3 3.68e+06 1.6 0.0e+00 0.0e+00 > 0.0e+00 22 24 0 0 0 22 24 0 0 0 1624 > > MatMult 77 1.0 3.5985e-03 1.2 2.18e+06 2.4 1.5e+03 3.8e+02 > 0.0e+00 1 25 97 99 0 1 25 97 99 0 3393 > MatSolve 77 1.0 3.8145e-03 1.4 2.16e+06 2.4 0.0e+00 0.0e+00 > 0.0e+00 1 24 0 0 0 1 24 0 0 0 3163 > MatLUFactorNum 1 1.0 9.3037e-04 1.9 3.37e+04 2.6 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 196 > MatILUFactorSym 1 1.0 2.1638e-03 3.9 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatAssemblyBegin 1 1.0 1.9466e-03 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 > 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 > MatAssemblyEnd 1 1.0 2.1234e-02 1.0 0.00e+00 0.0 4.0e+01 9.6e+01 > 8.0e+00 8 0 3 1 3 8 0 3 1 3 0 > MatGetRowIJ 1 1.0 1.0025e-0312.9 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatGetOrdering 1 1.0 1.4848e-03 2.8 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecTDot 154 1.0 4.1220e-03 1.8 1.06e+06 1.0 0.0e+00 0.0e+00 > 1.5e+02 1 17 0 0 62 1 17 0 0 62 2026 > VecNorm 78 1.0 1.5534e-01 1.0 5.38e+05 1.0 0.0e+00 0.0e+00 > 7.8e+01 60 9 0 0 31 60 9 0 0 31 27 > VecSet 79 1.0 1.5549e-03 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecAXPY 154 1.0 8.0559e-04 1.2 1.06e+06 1.0 0.0e+00 0.0e+00 > 0.0e+00 0 17 0 0 0 0 17 0 0 0 10368 > VecAYPX 76 1.0 5.8600e-04 1.4 5.24e+05 1.0 0.0e+00 0.0e+00 > 0.0e+00 0 8 0 0 0 0 8 0 0 0 7034 > VecScatterBegin 77 1.0 8.4793e-04 3.7 0.00e+00 0.0 1.5e+03 3.8e+02 > 0.0e+00 0 0 97 99 0 0 0 97 99 0 0 > VecScatterEnd 77 1.0 7.7019e-04 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSetUp 2 1.0 1.1451e-03 3.8 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSolve 1 1.0 1.8231e-01 1.0 7.49e+06 1.5 1.5e+03 3.8e+02 > 2.3e+02 71100 97 99 93 71100 97 99 94 272 > PCSetUp 2 1.0 1.0994e-02 1.1 3.37e+04 2.6 0.0e+00 0.0e+00 > 0.0e+00 4 0 0 0 0 4 0 0 0 0 17 > PCSetUpOnBlocks 1 1.0 4.9001e-03 1.2 3.37e+04 2.6 0.0e+00 0.0e+00 > 0.0e+00 2 0 0 0 0 2 0 0 0 0 37 > PCApply 77 1.0 5.2556e-03 1.3 2.16e+06 2.4 0.0e+00 0.0e+00 > 0.0e+00 2 24 0 0 0 2 24 0 0 0 2296 > > MatMult 78 1.0 1.2783e-02 4.8 1.16e+06 3.9 3.5e+03 2.5e+02 > 0.0e+00 1 25 98 99 0 1 25 98 99 0 968 > MatSolve 78 1.0 1.4015e-0214.0 1.14e+06 3.9 0.0e+00 0.0e+00 > 0.0e+00 0 24 0 0 0 0 24 0 0 0 867 > MatLUFactorNum 1 1.0 1.0275e-0240.1 1.76e+04 4.5 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 18 > MatILUFactorSym 1 1.0 2.0541e-0213.3 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > MatAssemblyBegin 1 1.0 2.1347e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 > 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 > MatAssemblyEnd 1 1.0 1.5367e-01 1.1 0.00e+00 0.0 9.0e+01 6.5e+01 > 8.0e+00 12 0 2 1 3 12 0 2 1 3 0 > MatGetRowIJ 1 1.0 1.2759e-02159.9 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatGetOrdering 1 1.0 1.8199e-0221.2 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > VecTDot 156 1.0 1.3093e-02 6.1 5.45e+05 1.0 0.0e+00 0.0e+00 > 1.6e+02 1 17 0 0 62 1 17 0 0 62 646 > VecNorm 79 1.0 5.2373e-01 1.0 2.76e+05 1.0 0.0e+00 0.0e+00 > 7.9e+01 42 9 0 0 31 42 9 0 0 31 8 > VecSet 80 1.0 2.1215e-0229.2 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > VecAXPY 156 1.0 2.5283e-03 1.7 5.45e+05 1.0 0.0e+00 0.0e+00 > 0.0e+00 0 17 0 0 0 0 17 0 0 0 3346 > VecAYPX 77 1.0 1.5826e-03 2.6 2.69e+05 1.0 0.0e+00 0.0e+00 > 0.0e+00 0 8 0 0 0 0 8 0 0 0 2639 > VecScatterBegin 78 1.0 7.8273e-0326.8 0.00e+00 0.0 3.5e+03 2.5e+02 > 0.0e+00 0 0 98 99 0 0 0 98 99 0 0 > VecScatterEnd 78 1.0 4.8130e-0344.8 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSetUp 2 1.0 1.9786e-0232.6 0.00e+00 0.0 0.0e+00 0.0e+00 > 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > KSPSolve 1 1.0 6.7540e-01 1.0 3.87e+06 1.8 3.5e+03 2.5e+02 > 2.4e+02 54100 98 99 93 54100 98 99 94 74 > PCSetUp 2 1.0 9.6539e-02 1.2 1.76e+04 4.5 0.0e+00 0.0e+00 > 0.0e+00 7 0 0 0 0 7 0 0 0 0 2 > PCSetUpOnBlocks 1 1.0 5.1548e-02 1.8 1.76e+04 4.5 0.0e+00 0.0e+00 > 0.0e+00 3 0 0 0 0 3 0 0 0 0 4 > PCApply 78 1.0 1.7296e-02 5.3 1.14e+06 3.9 0.0e+00 0.0e+00 > 0.0e+00 1 24 0 0 0 1 24 0 0 0 702 > ------------------------------------------------------------ > ------------------------------------------------------------ > > > > > > On Nov 17, 2016, at 6:28 AM, Ivano Barletta wrote: > > > > Dear Petsc users > > > > My aim is to replace the linear solver of an ocean model with Petsc, to > see if is > > there place for improvement of performances. > > > > The linear system solves an elliptic equation, and the former solver is a > > Preconditioned Conjugate Gradient, with a simple diagonal > preconditioning. > > The size of the matrix is roughly 27000 > > > > Prior to nest Petsc into the model, I've built a simple test case, where > > the same system is solved by the two of the methods > > > > I've noticed that, compared to the former solver (pcg), Petsc performance > > results are quite disappointing > > > > Pcg does not scale that much, but its solution time remains below > > 4-5e-2 seconds. > > Petsc solution time, instead, the more cpu I use the more increases > > (see output of -log_view in attachment ). > > > > I've only tried to change the ksp solver ( gmres, cg, and bcgs with no > > improvement) and preconditioning is the default of Petsc. Maybe these > > options don't suit my problem very well, but I don't think this alone > > justifies this strange behavior > > > > I've tried to provide d_nnz and o_nnz for the exact number of nonzeros > in the > > Preallocation phase, but no gain even in this case. > > > > At this point, my question is, what am I doing wrong? > > > > Do you think that the problem is too small for the Petsc to > > have any effect? > > > > Thanks in advance > > Ivano > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: petsc_log_8 Type: application/octet-stream Size: 21848 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: petsc_log_4 Type: application/octet-stream Size: 21633 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: petsc_log_16 Type: application/octet-stream Size: 22089 bytes Desc: not available URL: From bsmith at mcs.anl.gov Thu Nov 17 13:12:58 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Thu, 17 Nov 2016 13:12:58 -0600 Subject: [petsc-users] Suspect Poor Performance of Petsc In-Reply-To: References: <6E5C1CE6-FDD6-4DCF-A1B9-BF8AC62D3E3D@mcs.anl.gov> Message-ID: > On Nov 17, 2016, at 12:25 PM, Ivano Barletta wrote: > > Thank you for your replies > > I've carried out 3 new tests with 4,8,16 cores, adding the > code lines suggested by Barry (logs in attachment ) > > Still lack of scaling persist, but maybe is just related to the size > of the problem. > > As far as balancing concerns, there's not very much I can do, I > believe it depends on land/sea points, (on land matrix coefficients > are zero), it's something I cannot control. Sure you can. You need to divide the rows between processes to balance the work per process (not just balance the number of rows per process), to first order you can assume the work is proportional to the number of nonzeros in the matrix on that process. Thus you want to divide up the rows so each process has the same number of nonzeros (this is not perfect but is a start). :VecNorm 65 1.0 7.4379e-02 1.0 8.87e+05 1.0 0.0e+00 0.0e+00 6.5e+01 72 9 0 0 31 82 9 0 0 34 47 :VecNorm 67 1.0 7.8646e-02 1.0 4.62e+05 1.0 0.0e+00 0.0e+00 6.7e+01 43 9 0 0 31 72 9 0 0 34 46 0:VecNorm 67 1.0 2.0528e-01 1.2 2.34e+05 1.0 0.0e+00 0.0e+00 6.7e+01 32 9 0 0 31 63 9 0 0 34 18 The time "spent" in VecNorm goes from 63 to 82 percent of the total solve time. This is due to the load imbalance. You absolutely have to deal properly with the load imbalance or you will never get good parallel speedup (regardless of problem size). Note: When you run on one process with -pc_type jacobi the KSPSolve time should be pretty close to the time of your other solver, if it is much larger than we need to figure out what extra work the PETSc solver is doing because the time for a basic solve using the same preconditioner with two different solvers is dictated by hardware, not software. Barry > > By the way, I mean to carry some test on higher resolution > configurations, with a bigger problem size > > Kind Regards > Ivano > > > 2016-11-17 17:24 GMT+01:00 Barry Smith : > > Ivano, > > I have cut and pasted the relevant parts of the logs below and removed a few irrelevent lines to make the analysis simplier. > > There is a lot of bad stuff going on that is hurting performance. > > 1) The percentage of the time in the linear solve is getting lower going from 79% with 4 processes to 54 % with 16 processes. This means the rest of the code is not scaling well, likely that is generating the matrix. How are you getting the matrix into the program? If you are reading it as ASCII (somehow in parallel?) you should not do that. You should use MatLoad() to get the matrix in efficiently (see for example src/ksp/ksp/examples/tutorials/ex10.c). > > To make the analysis better you need to add around the KSP solve. > > ierr = PetscLogStageRegister("Solve", &stage);CHKERRQ(ierr); > ierr = PetscLogStagePush(stage);CHKERRQ(ierr); > ierr = KSPSolve(ksp,bb,xx);CHKERRQ(ierr); > ierr = PetscLogStagePop();CHKERRQ(ierr); > > and rerun the three cases. > > 2) The load balance is bad even for four processes. For example it is 1.3 in the MatSolve, it should be really close to 1.0. How are you dividing the matrix up between processes? > > 3) It is spending a HUGE amount of time in VecNorm(), 26 % on 4 processes and 42% on 16 processes. This could be partially or completely due to load balancing but might have other issues. > > Run with -ksp_norm_type natural in your new sets of runs > > Also always run with -ksp_type cg ; it makes no sense to use gmres or the other KSP methods. > > Eagerly awaiting your response. > > Barry > > > > ------------------------------------------------------------------------------------------------------------------------ > Event Count Time (sec) Flops --- Global --- --- Stage --- Total > Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s > ------------------------------------------------------------------------------------------------------------------------ > > MatMult 75 1.0 4.1466e-03 1.2 3.70e+06 1.6 6.0e+02 4.4e+02 0.0e+00 13 25 97 99 0 13 25 97 99 0 2868 > MatSolve 75 1.0 6.1995e-03 1.3 3.68e+06 1.6 0.0e+00 0.0e+00 0.0e+00 19 24 0 0 0 19 24 0 0 0 1908 > MatLUFactorNum 1 1.0 3.6880e-04 1.4 5.81e+04 1.7 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 499 > MatILUFactorSym 1 1.0 1.7040e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > MatAssemblyBegin 1 1.0 2.5113e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 > MatAssemblyEnd 1 1.0 1.8365e-03 1.0 0.00e+00 0.0 1.6e+01 1.1e+02 8.0e+00 6 0 3 1 3 6 0 3 1 3 0 > MatGetRowIJ 1 1.0 2.2865e-0517.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatGetOrdering 1 1.0 6.1687e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecTDot 150 1.0 3.2991e-03 2.7 2.05e+06 1.0 0.0e+00 0.0e+00 1.5e+02 8 17 0 0 62 8 17 0 0 62 2466 > VecNorm 76 1.0 7.5034e-03 1.0 1.04e+06 1.0 0.0e+00 0.0e+00 7.6e+01 26 9 0 0 31 26 9 0 0 31 549 > VecSet 77 1.0 2.4495e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > VecAXPY 150 1.0 7.8158e-04 1.1 2.05e+06 1.0 0.0e+00 0.0e+00 0.0e+00 3 17 0 0 0 3 17 0 0 0 10409 > VecAYPX 74 1.0 6.8849e-04 1.0 1.01e+06 1.0 0.0e+00 0.0e+00 0.0e+00 2 8 0 0 0 2 8 0 0 0 5829 > VecScatterBegin 75 1.0 1.7794e-04 1.2 0.00e+00 0.0 6.0e+02 4.4e+02 0.0e+00 1 0 97 99 0 1 0 97 99 0 0 > VecScatterEnd 75 1.0 2.1674e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > KSPSetUp 2 1.0 1.4922e-04 4.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSolve 1 1.0 2.2833e-02 1.0 1.36e+07 1.3 6.0e+02 4.4e+02 2.3e+02 79100 97 99 93 79100 97 99 93 2116 > PCSetUp 2 1.0 1.0116e-03 1.2 5.81e+04 1.7 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 182 > PCSetUpOnBlocks 1 1.0 6.2872e-04 1.2 5.81e+04 1.7 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 293 > PCApply 75 1.0 7.2835e-03 1.3 3.68e+06 1.6 0.0e+00 0.0e+00 0.0e+00 22 24 0 0 0 22 24 0 0 0 1624 > > MatMult 77 1.0 3.5985e-03 1.2 2.18e+06 2.4 1.5e+03 3.8e+02 0.0e+00 1 25 97 99 0 1 25 97 99 0 3393 > MatSolve 77 1.0 3.8145e-03 1.4 2.16e+06 2.4 0.0e+00 0.0e+00 0.0e+00 1 24 0 0 0 1 24 0 0 0 3163 > MatLUFactorNum 1 1.0 9.3037e-04 1.9 3.37e+04 2.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 196 > MatILUFactorSym 1 1.0 2.1638e-03 3.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatAssemblyBegin 1 1.0 1.9466e-03 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 > MatAssemblyEnd 1 1.0 2.1234e-02 1.0 0.00e+00 0.0 4.0e+01 9.6e+01 8.0e+00 8 0 3 1 3 8 0 3 1 3 0 > MatGetRowIJ 1 1.0 1.0025e-0312.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatGetOrdering 1 1.0 1.4848e-03 2.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecTDot 154 1.0 4.1220e-03 1.8 1.06e+06 1.0 0.0e+00 0.0e+00 1.5e+02 1 17 0 0 62 1 17 0 0 62 2026 > VecNorm 78 1.0 1.5534e-01 1.0 5.38e+05 1.0 0.0e+00 0.0e+00 7.8e+01 60 9 0 0 31 60 9 0 0 31 27 > VecSet 79 1.0 1.5549e-03 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecAXPY 154 1.0 8.0559e-04 1.2 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 17 0 0 0 0 17 0 0 0 10368 > VecAYPX 76 1.0 5.8600e-04 1.4 5.24e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 7034 > VecScatterBegin 77 1.0 8.4793e-04 3.7 0.00e+00 0.0 1.5e+03 3.8e+02 0.0e+00 0 0 97 99 0 0 0 97 99 0 0 > VecScatterEnd 77 1.0 7.7019e-04 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSetUp 2 1.0 1.1451e-03 3.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSolve 1 1.0 1.8231e-01 1.0 7.49e+06 1.5 1.5e+03 3.8e+02 2.3e+02 71100 97 99 93 71100 97 99 94 272 > PCSetUp 2 1.0 1.0994e-02 1.1 3.37e+04 2.6 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 17 > PCSetUpOnBlocks 1 1.0 4.9001e-03 1.2 3.37e+04 2.6 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 37 > PCApply 77 1.0 5.2556e-03 1.3 2.16e+06 2.4 0.0e+00 0.0e+00 0.0e+00 2 24 0 0 0 2 24 0 0 0 2296 > > MatMult 78 1.0 1.2783e-02 4.8 1.16e+06 3.9 3.5e+03 2.5e+02 0.0e+00 1 25 98 99 0 1 25 98 99 0 968 > MatSolve 78 1.0 1.4015e-0214.0 1.14e+06 3.9 0.0e+00 0.0e+00 0.0e+00 0 24 0 0 0 0 24 0 0 0 867 > MatLUFactorNum 1 1.0 1.0275e-0240.1 1.76e+04 4.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 18 > MatILUFactorSym 1 1.0 2.0541e-0213.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > MatAssemblyBegin 1 1.0 2.1347e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 1 1 0 0 0 1 0 > MatAssemblyEnd 1 1.0 1.5367e-01 1.1 0.00e+00 0.0 9.0e+01 6.5e+01 8.0e+00 12 0 2 1 3 12 0 2 1 3 0 > MatGetRowIJ 1 1.0 1.2759e-02159.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatGetOrdering 1 1.0 1.8199e-0221.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > VecTDot 156 1.0 1.3093e-02 6.1 5.45e+05 1.0 0.0e+00 0.0e+00 1.6e+02 1 17 0 0 62 1 17 0 0 62 646 > VecNorm 79 1.0 5.2373e-01 1.0 2.76e+05 1.0 0.0e+00 0.0e+00 7.9e+01 42 9 0 0 31 42 9 0 0 31 8 > VecSet 80 1.0 2.1215e-0229.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > VecAXPY 156 1.0 2.5283e-03 1.7 5.45e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 17 0 0 0 0 17 0 0 0 3346 > VecAYPX 77 1.0 1.5826e-03 2.6 2.69e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2639 > VecScatterBegin 78 1.0 7.8273e-0326.8 0.00e+00 0.0 3.5e+03 2.5e+02 0.0e+00 0 0 98 99 0 0 0 98 99 0 0 > VecScatterEnd 78 1.0 4.8130e-0344.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSetUp 2 1.0 1.9786e-0232.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 > KSPSolve 1 1.0 6.7540e-01 1.0 3.87e+06 1.8 3.5e+03 2.5e+02 2.4e+02 54100 98 99 93 54100 98 99 94 74 > PCSetUp 2 1.0 9.6539e-02 1.2 1.76e+04 4.5 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 2 > PCSetUpOnBlocks 1 1.0 5.1548e-02 1.8 1.76e+04 4.5 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 4 > PCApply 78 1.0 1.7296e-02 5.3 1.14e+06 3.9 0.0e+00 0.0e+00 0.0e+00 1 24 0 0 0 1 24 0 0 0 702 > ------------------------------------------------------------------------------------------------------------------------ > > > > > > On Nov 17, 2016, at 6:28 AM, Ivano Barletta wrote: > > > > Dear Petsc users > > > > My aim is to replace the linear solver of an ocean model with Petsc, to see if is > > there place for improvement of performances. > > > > The linear system solves an elliptic equation, and the former solver is a > > Preconditioned Conjugate Gradient, with a simple diagonal preconditioning. > > The size of the matrix is roughly 27000 > > > > Prior to nest Petsc into the model, I've built a simple test case, where > > the same system is solved by the two of the methods > > > > I've noticed that, compared to the former solver (pcg), Petsc performance > > results are quite disappointing > > > > Pcg does not scale that much, but its solution time remains below > > 4-5e-2 seconds. > > Petsc solution time, instead, the more cpu I use the more increases > > (see output of -log_view in attachment ). > > > > I've only tried to change the ksp solver ( gmres, cg, and bcgs with no > > improvement) and preconditioning is the default of Petsc. Maybe these > > options don't suit my problem very well, but I don't think this alone > > justifies this strange behavior > > > > I've tried to provide d_nnz and o_nnz for the exact number of nonzeros in the > > Preallocation phase, but no gain even in this case. > > > > At this point, my question is, what am I doing wrong? > > > > Do you think that the problem is too small for the Petsc to > > have any effect? > > > > Thanks in advance > > Ivano > > > > > > > From popov at uni-mainz.de Fri Nov 18 05:29:46 2016 From: popov at uni-mainz.de (Anton Popov) Date: Fri, 18 Nov 2016 12:29:46 +0100 Subject: [petsc-users] KSP ex65 and DMShell context Message-ID: <2aae58df-cc37-e732-e903-65ca754085dd@uni-mainz.de> Hi all, KSP ex65 fails with -pc_type mg -pc_mg_galerkin [0]PETSC ERROR: Nonconforming object sizes [0]PETSC ERROR: Matrix dimensions are incompatible, 129 != 65 This can be fixed either by adding MatTranspose after DMCreateInterpolation in CreateRestriction, or by commenting out DMShellSetCreateRestriction. Replacing DMCreateInterpolation with DMCreateRestriction in CreateRestriction also fails with a segfault: [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: [0] DMCreateRestriction line 1064 /home/anton/LIB/petsc-3.7.4-debug/src/dm/interface/dm.c This example uses DMDA objects as context variables, and calls destroy on them right after creating coarse DMShell. Due to PETSc reference counting mechanism they are not destroyed immediately, so everything works without access violations and memory leaks. I wander how I should destroy my ordinary user contexts. One option is keeping a pointer to coarse context in the fine context, and destroying hierarchy recursively. Is there anything better (e.g. something like DMShellSetDestroyContext)? Thanks, Anton From joseph_park at nps.gov Fri Nov 18 14:13:04 2016 From: joseph_park at nps.gov (Park, Joseph) Date: Fri, 18 Nov 2016 15:13:04 -0500 Subject: [petsc-users] petsc 3.4.5 on CentOS 7.2.511 Message-ID: I'm having difficulty configuring petsc 3.4.5 on a CentOS 7.2 machine. I'm forced to use petsc 3.4.5 until the application (C++) can be upgraded. We are restricted to EPEL packages for gcc, OpenMPI and all libraries. The only 'tweak' is that EPEL package compat-openmpi16 is used instead of openmpi, as the latter seems incompatible with petsc 3.4.2. Petsc configures and builds fine via: ./configure --download-f2cblaslapack=1 --with-mpi-dir=/usr/lib64/compat-openmpi16 --with-debugging=1 --with-clanguage=cxx --with-fc=0 make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 PETSC_ARCH=arch-linux2-cxx-debug all However, at test time: make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 PETSC_ARCH=arch-linux2-cxx-debug test Running test examples to verify correct installation Using PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 and PETSC_ARCH=arch-linux2-cxx-debug /usr/bin/sh: line 20: 24136 Segmentation fault /usr/lib64/compat-openmpi16/bin/mpiexec -n 1 ./ex19 -da_refine 3 -pc_type mg -ksp_type fgmres > ex19_1.tmp 2>&1 Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html [snailkite:24136] *** Process received signal *** [snailkite:24136] Signal: Segmentation fault (11) [snailkite:24136] Signal code: Address not mapped (1) [snailkite:24136] Failing at address: (nil) [snailkite:24136] [ 0] /lib64/libpthread.so.0(+0xf100) [0x7ff020de8100] [snailkite:24136] [ 1] /lib64/libc.so.6(+0x85346) [0x7ff020a9c346] [snailkite:24136] [ 2] /lib64/libhwloc.so.5(+0x7ccb) [0x7ff021206ccb] [snailkite:24136] [ 3] /lib64/libhwloc.so.5(hwloc__insert_object_by_cpuset+0xa7) [0x7ff021206e87] [snailkite:24136] [ 4] /lib64/libhwloc.so.5(+0x2196e) [0x7ff02122096e] [snailkite:24136] [ 5] /lib64/libhwloc.so.5(+0x22828) [0x7ff021221828] [snailkite:24136] [ 6] /lib64/libhwloc.so.5(+0x228a3) [0x7ff0212218a3] [snailkite:24136] [ 7] /lib64/libhwloc.so.5(hwloc_topology_load+0x13b) [0x7ff0212098bb] [snailkite:24136] [ 8] /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_odls_base_open+0x7ab) [0x7ff021fa6dbb] [snailkite:24136] [ 9] /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so(+0x2e54) [0x7ff01f233e54] [snailkite:24136] [10] /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_init+0x193) [0x7ff021f7dd83] [snailkite:24136] [11] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403dd5] [snailkite:24136] [12] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403430] [snailkite:24136] [13] /lib64/libc.so.6(__libc_start_main+0xf5) [0x7ff020a38b15] [snailkite:24136] [14] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403349] [snailkite:24136] *** End of error message *** /usr/bin/sh: line 20: 24139 Segmentation fault Under gdb: Program received signal SIGSEGV, Segmentation fault. 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 (gdb) (gdb) where #0 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 #1 0x00007ffff6db1ccb in hwloc_obj_cmp () from /lib64/libhwloc.so.5 #2 0x00007ffff6db1e87 in hwloc__insert_object_by_cpuset () from /lib64/libhwloc.so.5 #3 0x00007ffff6dcb96e in summarize () from /lib64/libhwloc.so.5 #4 0x00007ffff6dcc828 in hwloc_look_x86 () from /lib64/libhwloc.so.5 #5 0x00007ffff6dcc8a3 in hwloc_x86_discover () from /lib64/libhwloc.so.5 #6 0x00007ffff6db48bb in hwloc_topology_load () from /lib64/libhwloc.so.5 #7 0x00007ffff7b51dbb in orte_odls_base_open () from /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 #8 0x00007ffff4ddee54 in rte_init () from /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so #9 0x00007ffff7b28d83 in orte_init () from /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 #10 0x0000000000403dd5 in orterun () #11 0x0000000000403430 in main () Any suggestions are most welcome! -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Fri Nov 18 14:38:20 2016 From: balay at mcs.anl.gov (Satish Balay) Date: Fri, 18 Nov 2016 14:38:20 -0600 Subject: [petsc-users] petsc 3.4.5 on CentOS 7.2.511 In-Reply-To: References: Message-ID: The stack says - the crash is OpenMPI's orterun [aka mpiexec]. Perhaps its broken? you can run PETSc examples without mpiexec as: cd src/ksp/ksp/examples/tutorials make ex2 ./ex2 I don't understand the tweak. Usually 'compat' packages are used by precompiled binaries - that were compiled with old compilers. And PETSc shouldn't need it. Also PETSc can use system blas/lapack - instead of --download-f2cblaslapack=1 [but that shouldn't cause issues] Also gcc, openmpi are in the base CentOS 7.2 repo - so I'm not sure I understand the reference to EPEL. Satish On Fri, 18 Nov 2016, Park, Joseph wrote: > I'm having difficulty configuring petsc 3.4.5 on a CentOS 7.2 machine. I'm > forced to use petsc 3.4.5 until the application (C++) can be upgraded. We > are restricted to EPEL packages for gcc, OpenMPI and all libraries. > > The only 'tweak' is that EPEL package compat-openmpi16 is used instead > of openmpi, as the latter seems incompatible with petsc 3.4.2. > > Petsc configures and builds fine via: > > ./configure --download-f2cblaslapack=1 > --with-mpi-dir=/usr/lib64/compat-openmpi16 --with-debugging=1 > --with-clanguage=cxx --with-fc=0 > > make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 > PETSC_ARCH=arch-linux2-cxx-debug all > > However, at test time: > > make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 > PETSC_ARCH=arch-linux2-cxx-debug test > > Running test examples to verify correct installation > Using PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 and > PETSC_ARCH=arch-linux2-cxx-debug > /usr/bin/sh: line 20: 24136 Segmentation fault > /usr/lib64/compat-openmpi16/bin/mpiexec -n 1 ./ex19 -da_refine 3 -pc_type > mg -ksp_type fgmres > ex19_1.tmp 2>&1 > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI > process > See http://www.mcs.anl.gov/petsc/documentation/faq.html > [snailkite:24136] *** Process received signal *** > [snailkite:24136] Signal: Segmentation fault (11) > [snailkite:24136] Signal code: Address not mapped (1) > [snailkite:24136] Failing at address: (nil) > [snailkite:24136] [ 0] /lib64/libpthread.so.0(+0xf100) [0x7ff020de8100] > [snailkite:24136] [ 1] /lib64/libc.so.6(+0x85346) [0x7ff020a9c346] > [snailkite:24136] [ 2] /lib64/libhwloc.so.5(+0x7ccb) [0x7ff021206ccb] > [snailkite:24136] [ 3] > /lib64/libhwloc.so.5(hwloc__insert_object_by_cpuset+0xa7) [0x7ff021206e87] > [snailkite:24136] [ 4] /lib64/libhwloc.so.5(+0x2196e) [0x7ff02122096e] > [snailkite:24136] [ 5] /lib64/libhwloc.so.5(+0x22828) [0x7ff021221828] > [snailkite:24136] [ 6] /lib64/libhwloc.so.5(+0x228a3) [0x7ff0212218a3] > [snailkite:24136] [ 7] /lib64/libhwloc.so.5(hwloc_topology_load+0x13b) > [0x7ff0212098bb] > [snailkite:24136] [ 8] > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_odls_base_open+0x7ab) > [0x7ff021fa6dbb] > [snailkite:24136] [ 9] > /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so(+0x2e54) > [0x7ff01f233e54] > [snailkite:24136] [10] > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_init+0x193) > [0x7ff021f7dd83] > [snailkite:24136] [11] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403dd5] > [snailkite:24136] [12] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403430] > [snailkite:24136] [13] /lib64/libc.so.6(__libc_start_main+0xf5) > [0x7ff020a38b15] > [snailkite:24136] [14] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403349] > [snailkite:24136] *** End of error message *** > /usr/bin/sh: line 20: 24139 Segmentation fault > > Under gdb: > > Program received signal SIGSEGV, Segmentation fault. > 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 > (gdb) > (gdb) where > #0 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 > #1 0x00007ffff6db1ccb in hwloc_obj_cmp () from /lib64/libhwloc.so.5 > #2 0x00007ffff6db1e87 in hwloc__insert_object_by_cpuset () from > /lib64/libhwloc.so.5 > #3 0x00007ffff6dcb96e in summarize () from /lib64/libhwloc.so.5 > #4 0x00007ffff6dcc828 in hwloc_look_x86 () from /lib64/libhwloc.so.5 > #5 0x00007ffff6dcc8a3 in hwloc_x86_discover () from /lib64/libhwloc.so.5 > #6 0x00007ffff6db48bb in hwloc_topology_load () from /lib64/libhwloc.so.5 > #7 0x00007ffff7b51dbb in orte_odls_base_open () > from /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 > #8 0x00007ffff4ddee54 in rte_init () from > /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so > #9 0x00007ffff7b28d83 in orte_init () from > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 > #10 0x0000000000403dd5 in orterun () > #11 0x0000000000403430 in main () > > Any suggestions are most welcome! > From balay at mcs.anl.gov Fri Nov 18 15:03:07 2016 From: balay at mcs.anl.gov (Satish Balay) Date: Fri, 18 Nov 2016 15:03:07 -0600 Subject: [petsc-users] petsc 3.4.5 on CentOS 7.2.511 In-Reply-To: References: Message-ID: I just tried a of petsc-3.4 on centos-7.2 - and that went through fine. ./configure --with-clanguage=cxx --with-mpi-dir=/usr/lib64/openmpi/bin --with-c2html=0 Satish On Fri, 18 Nov 2016, Satish Balay wrote: > The stack says - the crash is OpenMPI's orterun [aka mpiexec]. > > Perhaps its broken? > > you can run PETSc examples without mpiexec as: > > cd src/ksp/ksp/examples/tutorials > make ex2 > ./ex2 > > I don't understand the tweak. Usually 'compat' packages are used by > precompiled binaries - that were compiled with old compilers. And > PETSc shouldn't need it. > > Also PETSc can use system blas/lapack - instead of > --download-f2cblaslapack=1 [but that shouldn't cause issues] > > Also gcc, openmpi are in the base CentOS 7.2 repo - so I'm not sure I > understand the reference to EPEL. > > Satish > > On Fri, 18 Nov 2016, Park, Joseph wrote: > > > I'm having difficulty configuring petsc 3.4.5 on a CentOS 7.2 machine. I'm > > forced to use petsc 3.4.5 until the application (C++) can be upgraded. We > > are restricted to EPEL packages for gcc, OpenMPI and all libraries. > > > > The only 'tweak' is that EPEL package compat-openmpi16 is used instead > > of openmpi, as the latter seems incompatible with petsc 3.4.2. > > > > Petsc configures and builds fine via: > > > > ./configure --download-f2cblaslapack=1 > > --with-mpi-dir=/usr/lib64/compat-openmpi16 --with-debugging=1 > > --with-clanguage=cxx --with-fc=0 > > > > make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 > > PETSC_ARCH=arch-linux2-cxx-debug all > > > > However, at test time: > > > > make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 > > PETSC_ARCH=arch-linux2-cxx-debug test > > > > Running test examples to verify correct installation > > Using PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 and > > PETSC_ARCH=arch-linux2-cxx-debug > > /usr/bin/sh: line 20: 24136 Segmentation fault > > /usr/lib64/compat-openmpi16/bin/mpiexec -n 1 ./ex19 -da_refine 3 -pc_type > > mg -ksp_type fgmres > ex19_1.tmp 2>&1 > > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI > > process > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > [snailkite:24136] *** Process received signal *** > > [snailkite:24136] Signal: Segmentation fault (11) > > [snailkite:24136] Signal code: Address not mapped (1) > > [snailkite:24136] Failing at address: (nil) > > [snailkite:24136] [ 0] /lib64/libpthread.so.0(+0xf100) [0x7ff020de8100] > > [snailkite:24136] [ 1] /lib64/libc.so.6(+0x85346) [0x7ff020a9c346] > > [snailkite:24136] [ 2] /lib64/libhwloc.so.5(+0x7ccb) [0x7ff021206ccb] > > [snailkite:24136] [ 3] > > /lib64/libhwloc.so.5(hwloc__insert_object_by_cpuset+0xa7) [0x7ff021206e87] > > [snailkite:24136] [ 4] /lib64/libhwloc.so.5(+0x2196e) [0x7ff02122096e] > > [snailkite:24136] [ 5] /lib64/libhwloc.so.5(+0x22828) [0x7ff021221828] > > [snailkite:24136] [ 6] /lib64/libhwloc.so.5(+0x228a3) [0x7ff0212218a3] > > [snailkite:24136] [ 7] /lib64/libhwloc.so.5(hwloc_topology_load+0x13b) > > [0x7ff0212098bb] > > [snailkite:24136] [ 8] > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_odls_base_open+0x7ab) > > [0x7ff021fa6dbb] > > [snailkite:24136] [ 9] > > /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so(+0x2e54) > > [0x7ff01f233e54] > > [snailkite:24136] [10] > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_init+0x193) > > [0x7ff021f7dd83] > > [snailkite:24136] [11] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403dd5] > > [snailkite:24136] [12] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403430] > > [snailkite:24136] [13] /lib64/libc.so.6(__libc_start_main+0xf5) > > [0x7ff020a38b15] > > [snailkite:24136] [14] /usr/lib64/compat-openmpi16/bin/mpiexec() [0x403349] > > [snailkite:24136] *** End of error message *** > > /usr/bin/sh: line 20: 24139 Segmentation fault > > > > Under gdb: > > > > Program received signal SIGSEGV, Segmentation fault. > > 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 > > (gdb) > > (gdb) where > > #0 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 > > #1 0x00007ffff6db1ccb in hwloc_obj_cmp () from /lib64/libhwloc.so.5 > > #2 0x00007ffff6db1e87 in hwloc__insert_object_by_cpuset () from > > /lib64/libhwloc.so.5 > > #3 0x00007ffff6dcb96e in summarize () from /lib64/libhwloc.so.5 > > #4 0x00007ffff6dcc828 in hwloc_look_x86 () from /lib64/libhwloc.so.5 > > #5 0x00007ffff6dcc8a3 in hwloc_x86_discover () from /lib64/libhwloc.so.5 > > #6 0x00007ffff6db48bb in hwloc_topology_load () from /lib64/libhwloc.so.5 > > #7 0x00007ffff7b51dbb in orte_odls_base_open () > > from /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 > > #8 0x00007ffff4ddee54 in rte_init () from > > /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so > > #9 0x00007ffff7b28d83 in orte_init () from > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 > > #10 0x0000000000403dd5 in orterun () > > #11 0x0000000000403430 in main () > > > > Any suggestions are most welcome! > > > > From bsmith at mcs.anl.gov Fri Nov 18 15:30:58 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 18 Nov 2016 15:30:58 -0600 Subject: [petsc-users] KSP ex65 and DMShell context In-Reply-To: <2aae58df-cc37-e732-e903-65ca754085dd@uni-mainz.de> References: <2aae58df-cc37-e732-e903-65ca754085dd@uni-mainz.de> Message-ID: <7D88B280-E32C-4904-821A-28AAEBFAB8BC@mcs.anl.gov> Thanks. Fixed in master > On Nov 18, 2016, at 5:29 AM, Anton Popov wrote: > > Hi all, > > KSP ex65 fails with -pc_type mg -pc_mg_galerkin > > [0]PETSC ERROR: Nonconforming object sizes > [0]PETSC ERROR: Matrix dimensions are incompatible, 129 != 65 > > This can be fixed either by adding MatTranspose after DMCreateInterpolation in CreateRestriction, or by commenting out DMShellSetCreateRestriction. > > Replacing DMCreateInterpolation with DMCreateRestriction in CreateRestriction also fails with a segfault: > > [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range > [0]PETSC ERROR: [0] DMCreateRestriction line 1064 /home/anton/LIB/petsc-3.7.4-debug/src/dm/interface/dm.c > > This example uses DMDA objects as context variables, and calls destroy on them right after creating coarse DMShell. Due to PETSc reference counting mechanism they are not destroyed immediately, so everything works without access violations and memory leaks. > > I wander how I should destroy my ordinary user contexts. One option is keeping a pointer to coarse context in the fine context, and destroying hierarchy recursively. > > Is there anything better (e.g. something like DMShellSetDestroyContext)? > > Thanks, > Anton From hzhang at mcs.anl.gov Sun Nov 20 21:43:29 2016 From: hzhang at mcs.anl.gov (Hong) Date: Sun, 20 Nov 2016 21:43:29 -0600 Subject: [petsc-users] SuperLU_dist issue in 3.7.4 In-Reply-To: References: <33127b2c-a0b4-bda0-bfa7-c7ebeed6b0ba@uni-mainz.de> <6B14246C-CA55-4E5B-BF5C-F01C33DACCB8@mcs.anl.gov> <94801705-937C-4D8D-BDCE-3E1AEAA4BCB4@mcs.anl.gov> <953ef0f8-b2bf-c152-9a6a-9927f0f47a24@uni-mainz.de> <4292667a-fda6-dafd-c8f6-44e8130f042a@uni-mainz.de> Message-ID: Anton, I pushed a fix https://bitbucket.org/petsc/petsc/commits/28865de08051eb99557d70672c208e14da23c8b1 in branch hzhang/fix-superlu_dist-reuse-factornumeric. Can you give it a try to see if it works? I do not have an example which produces your problem. In your email, you asked "Setting Options.Fact = DOFACT for all factorizations is currently impossible via PETSc interface. The user is expected to choose some kind of reuse model. If you could add it, I (and other users probably too) would really appreciate that." We do not allow user set superlu' Options.Fact = DOFACT. If user changes matrix structure, then user must call KSPSetOperators() -> call symbolic matrix factorization again, in which we set Options.Fact = DOFACT. Hong -------------- next part -------------- An HTML attachment was scrubbed... URL: From popov at uni-mainz.de Mon Nov 21 06:44:03 2016 From: popov at uni-mainz.de (Anton Popov) Date: Mon, 21 Nov 2016 13:44:03 +0100 Subject: [petsc-users] SuperLU_dist issue in 3.7.4 In-Reply-To: References: <33127b2c-a0b4-bda0-bfa7-c7ebeed6b0ba@uni-mainz.de> <94801705-937C-4D8D-BDCE-3E1AEAA4BCB4@mcs.anl.gov> <953ef0f8-b2bf-c152-9a6a-9927f0f47a24@uni-mainz.de> <4292667a-fda6-dafd-c8f6-44e8130f042a@uni-mainz.de> Message-ID: <9bc1a641-b0ac-4e9d-a4ad-0b0a3cae8d0e@uni-mainz.de> Thanks, Hong. I will try as soon as possible and let you know. Anton On 11/21/2016 04:43 AM, Hong wrote: > Anton, > I pushed a fix > https://bitbucket.org/petsc/petsc/commits/28865de08051eb99557d70672c208e14da23c8b1 > in branch hzhang/fix-superlu_dist-reuse-factornumeric. > Can you give it a try to see if it works? > I do not have an example which produces your problem. > > In your email, you asked "Setting Options.Fact = DOFACT for all > factorizations is currently impossible via PETSc interface. > The user is expected to choose some kind of reuse model. > If you could add it, I (and other users probably too) would really > appreciate that." > > We do not allow user set superlu' Options.Fact = DOFACT. If user > changes matrix structure, then user must call > KSPSetOperators() -> call symbolic matrix factorization again, in > which we set Options.Fact = DOFACT. > > Hong -------------- next part -------------- An HTML attachment was scrubbed... URL: From joseph_park at nps.gov Mon Nov 21 08:08:48 2016 From: joseph_park at nps.gov (Park, Joseph) Date: Mon, 21 Nov 2016 09:08:48 -0500 Subject: [petsc-users] petsc 3.4.5 on CentOS 7.2.511 In-Reply-To: References: Message-ID: Thank you! I tried the suggested invocation, but with a different result: ./configure --with-clanguage=cxx --with-mpi-dir=/usr/lib64/openmpi/bin --with-c2html=0 =============================================================================== Configuring PETSc to compile on your system =============================================================================== TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- --with-mpi-dir=/usr/lib64/openmpi/bin did not work ******************************************************************************* The configure.log ends with a self-referral suggestion and generation of the above error message, while the first error message tracing back from the end of configure.log provides: Pushing language CXX Popping language CXX sh: g++ -o /tmp/petsc-HWuXr9/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-HWuXr9/config.libraries/conftest.o /usr/lib64/openmpi/bin/lib64/i386/msmpi.lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -ldl -lgcc_s -ldl Executing: g++ -o /tmp/petsc-HWuXr9/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-HWuXr9/config.libraries/conftest.o /usr/lib64/openmpi/bin/lib64/i386/msmpi.lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -ldl -lgcc_s -ldl sh: Possible ERROR while running linker: g++: error: /usr/lib64/openmpi/bin/lib64/i386/msmpi.lib: No such file or directory output: ret = 256 error message = {g++: error: /usr/lib64/openmpi/bin/lib64/i386/msmpi.lib: No such file or directory } Indeed, there is no /usr/lib64/openmpi/bin/lib64, but i'm not clear as to whether this is a 'possible' or the realised error. Perhaps this all boils down to an incomplete development environment. On Fri, Nov 18, 2016 at 4:03 PM, Satish Balay wrote: > I just tried a of petsc-3.4 on centos-7.2 - and that went through fine. > > ./configure --with-clanguage=cxx --with-mpi-dir=/usr/lib64/openmpi/bin > --with-c2html=0 > > Satish > > On Fri, 18 Nov 2016, Satish Balay wrote: > > > The stack says - the crash is OpenMPI's orterun [aka mpiexec]. > > > > Perhaps its broken? > > > > you can run PETSc examples without mpiexec as: > > > > cd src/ksp/ksp/examples/tutorials > > make ex2 > > ./ex2 > > > > I don't understand the tweak. Usually 'compat' packages are used by > > precompiled binaries - that were compiled with old compilers. And > > PETSc shouldn't need it. > > > > Also PETSc can use system blas/lapack - instead of > > --download-f2cblaslapack=1 [but that shouldn't cause issues] > > > > Also gcc, openmpi are in the base CentOS 7.2 repo - so I'm not sure I > > understand the reference to EPEL. > > > > Satish > > > > On Fri, 18 Nov 2016, Park, Joseph wrote: > > > > > I'm having difficulty configuring petsc 3.4.5 on a CentOS 7.2 machine. > I'm > > > forced to use petsc 3.4.5 until the application (C++) can be > upgraded. We > > > are restricted to EPEL packages for gcc, OpenMPI and all libraries. > > > > > > The only 'tweak' is that EPEL package compat-openmpi16 is used instead > > > of openmpi, as the latter seems incompatible with petsc 3.4.2. > > > > > > Petsc configures and builds fine via: > > > > > > ./configure --download-f2cblaslapack=1 > > > --with-mpi-dir=/usr/lib64/compat-openmpi16 --with-debugging=1 > > > --with-clanguage=cxx --with-fc=0 > > > > > > make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 > > > PETSC_ARCH=arch-linux2-cxx-debug all > > > > > > However, at test time: > > > > > > make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 > > > PETSC_ARCH=arch-linux2-cxx-debug test > > > > > > Running test examples to verify correct installation > > > Using PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 and > > > PETSC_ARCH=arch-linux2-cxx-debug > > > /usr/bin/sh: line 20: 24136 Segmentation fault > > > /usr/lib64/compat-openmpi16/bin/mpiexec -n 1 ./ex19 -da_refine 3 > -pc_type > > > mg -ksp_type fgmres > ex19_1.tmp 2>&1 > > > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 > MPI > > > process > > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > > [snailkite:24136] *** Process received signal *** > > > [snailkite:24136] Signal: Segmentation fault (11) > > > [snailkite:24136] Signal code: Address not mapped (1) > > > [snailkite:24136] Failing at address: (nil) > > > [snailkite:24136] [ 0] /lib64/libpthread.so.0(+0xf100) > [0x7ff020de8100] > > > [snailkite:24136] [ 1] /lib64/libc.so.6(+0x85346) [0x7ff020a9c346] > > > [snailkite:24136] [ 2] /lib64/libhwloc.so.5(+0x7ccb) [0x7ff021206ccb] > > > [snailkite:24136] [ 3] > > > /lib64/libhwloc.so.5(hwloc__insert_object_by_cpuset+0xa7) > [0x7ff021206e87] > > > [snailkite:24136] [ 4] /lib64/libhwloc.so.5(+0x2196e) [0x7ff02122096e] > > > [snailkite:24136] [ 5] /lib64/libhwloc.so.5(+0x22828) [0x7ff021221828] > > > [snailkite:24136] [ 6] /lib64/libhwloc.so.5(+0x228a3) [0x7ff0212218a3] > > > [snailkite:24136] [ 7] /lib64/libhwloc.so.5(hwloc_topology_load+0x13b) > > > [0x7ff0212098bb] > > > [snailkite:24136] [ 8] > > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_ > odls_base_open+0x7ab) > > > [0x7ff021fa6dbb] > > > [snailkite:24136] [ 9] > > > /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so(+0x2e54) > > > [0x7ff01f233e54] > > > [snailkite:24136] [10] > > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_init+0x193) > > > [0x7ff021f7dd83] > > > [snailkite:24136] [11] /usr/lib64/compat-openmpi16/bin/mpiexec() > [0x403dd5] > > > [snailkite:24136] [12] /usr/lib64/compat-openmpi16/bin/mpiexec() > [0x403430] > > > [snailkite:24136] [13] /lib64/libc.so.6(__libc_start_main+0xf5) > > > [0x7ff020a38b15] > > > [snailkite:24136] [14] /usr/lib64/compat-openmpi16/bin/mpiexec() > [0x403349] > > > [snailkite:24136] *** End of error message *** > > > /usr/bin/sh: line 20: 24139 Segmentation fault > > > > > > Under gdb: > > > > > > Program received signal SIGSEGV, Segmentation fault. > > > 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 > > > (gdb) > > > (gdb) where > > > #0 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 > > > #1 0x00007ffff6db1ccb in hwloc_obj_cmp () from /lib64/libhwloc.so.5 > > > #2 0x00007ffff6db1e87 in hwloc__insert_object_by_cpuset () from > > > /lib64/libhwloc.so.5 > > > #3 0x00007ffff6dcb96e in summarize () from /lib64/libhwloc.so.5 > > > #4 0x00007ffff6dcc828 in hwloc_look_x86 () from /lib64/libhwloc.so.5 > > > #5 0x00007ffff6dcc8a3 in hwloc_x86_discover () from > /lib64/libhwloc.so.5 > > > #6 0x00007ffff6db48bb in hwloc_topology_load () from > /lib64/libhwloc.so.5 > > > #7 0x00007ffff7b51dbb in orte_odls_base_open () > > > from /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 > > > #8 0x00007ffff4ddee54 in rte_init () from > > > /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so > > > #9 0x00007ffff7b28d83 in orte_init () from > > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 > > > #10 0x0000000000403dd5 in orterun () > > > #11 0x0000000000403430 in main () > > > > > > Any suggestions are most welcome! > > > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Nov 21 08:16:22 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 21 Nov 2016 08:16:22 -0600 Subject: [petsc-users] petsc 3.4.5 on CentOS 7.2.511 In-Reply-To: References: Message-ID: On Mon, Nov 21, 2016 at 8:08 AM, Park, Joseph wrote: > Thank you! I tried the suggested invocation, but with a different result: > > ./configure --with-clanguage=cxx --with-mpi-dir=/usr/lib64/openmpi/bin > --with-c2html=0 > ============================================================ > =================== > Configuring PETSc to compile on your system > > ============================================================ > =================== > TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) > ***************************** > ************************************************** > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > details): > ------------------------------------------------------------ > ------------------- > --with-mpi-dir=/usr/lib64/openmpi/bin did not work > ************************************************************ > ******************* > > The configure.log ends with a self-referral suggestion and generation of > the above error message, while the first error message tracing back from > the end of configure.log provides: > You HAVE to send the log with bug reports. Otherwise, we are just guessing. Matt > Pushing language CXX > Popping language CXX > sh: g++ -o /tmp/petsc-HWuXr9/config.libraries/conftest -Wall > -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g > /tmp/petsc-HWuXr9/config.libraries/conftest.o > /usr/lib64/openmpi/bin/lib64/i386/msmpi.lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 > -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -ldl -lgcc_s -ldl > Executing: g++ -o /tmp/petsc-HWuXr9/config.libraries/conftest -Wall > -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g > /tmp/petsc-HWuXr9/config.libraries/conftest.o > /usr/lib64/openmpi/bin/lib64/i386/msmpi.lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 > -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -ldl -lgcc_s -ldl > sh: > Possible ERROR while running linker: g++: error: > /usr/lib64/openmpi/bin/lib64/i386/msmpi.lib: No such file or directory > output: ret = 256 > error message = {g++: error: /usr/lib64/openmpi/bin/lib64/i386/msmpi.lib: > No such file or directory > } > > Indeed, there is no /usr/lib64/openmpi/bin/lib64, but i'm not clear as to > whether this is a 'possible' or the realised error. > > Perhaps this all boils down to an incomplete development environment. > > > > On Fri, Nov 18, 2016 at 4:03 PM, Satish Balay wrote: > >> I just tried a of petsc-3.4 on centos-7.2 - and that went through fine. >> >> ./configure --with-clanguage=cxx --with-mpi-dir=/usr/lib64/openmpi/bin >> --with-c2html=0 >> >> Satish >> >> On Fri, 18 Nov 2016, Satish Balay wrote: >> >> > The stack says - the crash is OpenMPI's orterun [aka mpiexec]. >> > >> > Perhaps its broken? >> > >> > you can run PETSc examples without mpiexec as: >> > >> > cd src/ksp/ksp/examples/tutorials >> > make ex2 >> > ./ex2 >> > >> > I don't understand the tweak. Usually 'compat' packages are used by >> > precompiled binaries - that were compiled with old compilers. And >> > PETSc shouldn't need it. >> > >> > Also PETSc can use system blas/lapack - instead of >> > --download-f2cblaslapack=1 [but that shouldn't cause issues] >> > >> > Also gcc, openmpi are in the base CentOS 7.2 repo - so I'm not sure I >> > understand the reference to EPEL. >> > >> > Satish >> > >> > On Fri, 18 Nov 2016, Park, Joseph wrote: >> > >> > > I'm having difficulty configuring petsc 3.4.5 on a CentOS 7.2 >> machine. I'm >> > > forced to use petsc 3.4.5 until the application (C++) can be >> upgraded. We >> > > are restricted to EPEL packages for gcc, OpenMPI and all libraries. >> > > >> > > The only 'tweak' is that EPEL package compat-openmpi16 is used instead >> > > of openmpi, as the latter seems incompatible with petsc 3.4.2. >> > > >> > > Petsc configures and builds fine via: >> > > >> > > ./configure --download-f2cblaslapack=1 >> > > --with-mpi-dir=/usr/lib64/compat-openmpi16 --with-debugging=1 >> > > --with-clanguage=cxx --with-fc=0 >> > > >> > > make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 >> > > PETSC_ARCH=arch-linux2-cxx-debug all >> > > >> > > However, at test time: >> > > >> > > make PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 >> > > PETSC_ARCH=arch-linux2-cxx-debug test >> > > >> > > Running test examples to verify correct installation >> > > Using PETSC_DIR=/opt/sfwmd_rsm/apps/petsc-3.4.5 and >> > > PETSC_ARCH=arch-linux2-cxx-debug >> > > /usr/bin/sh: line 20: 24136 Segmentation fault >> > > /usr/lib64/compat-openmpi16/bin/mpiexec -n 1 ./ex19 -da_refine 3 >> -pc_type >> > > mg -ksp_type fgmres > ex19_1.tmp 2>&1 >> > > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 >> MPI >> > > process >> > > See http://www.mcs.anl.gov/petsc/documentation/faq.html >> > > [snailkite:24136] *** Process received signal *** >> > > [snailkite:24136] Signal: Segmentation fault (11) >> > > [snailkite:24136] Signal code: Address not mapped (1) >> > > [snailkite:24136] Failing at address: (nil) >> > > [snailkite:24136] [ 0] /lib64/libpthread.so.0(+0xf100) >> [0x7ff020de8100] >> > > [snailkite:24136] [ 1] /lib64/libc.so.6(+0x85346) [0x7ff020a9c346] >> > > [snailkite:24136] [ 2] /lib64/libhwloc.so.5(+0x7ccb) [0x7ff021206ccb] >> > > [snailkite:24136] [ 3] >> > > /lib64/libhwloc.so.5(hwloc__insert_object_by_cpuset+0xa7) >> [0x7ff021206e87] >> > > [snailkite:24136] [ 4] /lib64/libhwloc.so.5(+0x2196e) [0x7ff02122096e] >> > > [snailkite:24136] [ 5] /lib64/libhwloc.so.5(+0x22828) [0x7ff021221828] >> > > [snailkite:24136] [ 6] /lib64/libhwloc.so.5(+0x228a3) [0x7ff0212218a3] >> > > [snailkite:24136] [ 7] /lib64/libhwloc.so.5(hwloc_top >> ology_load+0x13b) >> > > [0x7ff0212098bb] >> > > [snailkite:24136] [ 8] >> > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_odls_ >> base_open+0x7ab) >> > > [0x7ff021fa6dbb] >> > > [snailkite:24136] [ 9] >> > > /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so(+0x2e54) >> > > [0x7ff01f233e54] >> > > [snailkite:24136] [10] >> > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4(orte_init+0x193) >> > > [0x7ff021f7dd83] >> > > [snailkite:24136] [11] /usr/lib64/compat-openmpi16/bin/mpiexec() >> [0x403dd5] >> > > [snailkite:24136] [12] /usr/lib64/compat-openmpi16/bin/mpiexec() >> [0x403430] >> > > [snailkite:24136] [13] /lib64/libc.so.6(__libc_start_main+0xf5) >> > > [0x7ff020a38b15] >> > > [snailkite:24136] [14] /usr/lib64/compat-openmpi16/bin/mpiexec() >> [0x403349] >> > > [snailkite:24136] *** End of error message *** >> > > /usr/bin/sh: line 20: 24139 Segmentation fault >> > > >> > > Under gdb: >> > > >> > > Program received signal SIGSEGV, Segmentation fault. >> > > 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 >> > > (gdb) >> > > (gdb) where >> > > #0 0x00007ffff6647346 in __strcmp_sse2 () from /lib64/libc.so.6 >> > > #1 0x00007ffff6db1ccb in hwloc_obj_cmp () from /lib64/libhwloc.so.5 >> > > #2 0x00007ffff6db1e87 in hwloc__insert_object_by_cpuset () from >> > > /lib64/libhwloc.so.5 >> > > #3 0x00007ffff6dcb96e in summarize () from /lib64/libhwloc.so.5 >> > > #4 0x00007ffff6dcc828 in hwloc_look_x86 () from /lib64/libhwloc.so.5 >> > > #5 0x00007ffff6dcc8a3 in hwloc_x86_discover () from >> /lib64/libhwloc.so.5 >> > > #6 0x00007ffff6db48bb in hwloc_topology_load () from >> /lib64/libhwloc.so.5 >> > > #7 0x00007ffff7b51dbb in orte_odls_base_open () >> > > from /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 >> > > #8 0x00007ffff4ddee54 in rte_init () from >> > > /usr/lib64/compat-openmpi16/lib/openmpi/mca_ess_hnp.so >> > > #9 0x00007ffff7b28d83 in orte_init () from >> > > /usr/lib64/compat-openmpi16/lib/libopen-rte.so.4 >> > > #10 0x0000000000403dd5 in orterun () >> > > #11 0x0000000000403430 in main () >> > > >> > > Any suggestions are most welcome! >> > > >> > >> > >> >> >> > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From Massoud.Rezavand at uibk.ac.at Mon Nov 21 10:33:22 2016 From: Massoud.Rezavand at uibk.ac.at (Massoud Rezavand) Date: Mon, 21 Nov 2016 17:33:22 +0100 Subject: [petsc-users] PETSc for ISPH Message-ID: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> Dear all, I am going to use PETSc in an Incompressible SPH code to solve the pressure Poisson equation as a linear system of equations. In my old sequential code I used the PCG method or the BiCGSTAB with jacobi preconditioner. I used to store the coefficient matrix (A) in CSR (AIJ) format and solve it. My question is that how should I import the CSR metrix and the known vector (b) into the library to be solved? Is there an example to show how to import and external system of eqs. into PETSc? In my case, the computational domain is decomposed by another library, so does it effect the performance of PETSc? With the best regards, Massoud From bsmith at mcs.anl.gov Mon Nov 21 11:18:39 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 21 Nov 2016 11:18:39 -0600 Subject: [petsc-users] PETSc for ISPH In-Reply-To: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> References: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> Message-ID: <95F49D17-B952-48EA-9212-301B1674DE9E@mcs.anl.gov> > On Nov 21, 2016, at 10:33 AM, Massoud Rezavand wrote: > > Dear all, > > I am going to use PETSc in an Incompressible SPH code to solve the pressure Poisson equation as a linear system of equations. > > In my old sequential code I used the PCG method or the BiCGSTAB with jacobi preconditioner. > I used to store the coefficient matrix (A) in CSR (AIJ) format and solve it. > > My question is that how should I import the CSR metrix and the known vector (b) into the library to be solved? Is there an example to show how to import and external system of eqs. into PETSc? For sequential code it is straightforward. If you already have the matrix in CSR format you can call MatCreateSeqAIJWithArrays() to create the PETSc matrix without copying the data. You can use VecCreateSeqWithArray() to provide the vector. Or you can use VecPlaceArray() to use the array of vector values you provide. > > In my case, the computational domain is decomposed by another library, so does it effect the performance of PETSc? I read this to mean you want the new code to be parallel (but the old one is sequential)? If you don't currently have matrix generation in parallel I urge you strongly to directly use MatSetValues() to generate your matrix, do not first put the matrix entries into some kind of parallel CSR format. If you already have the matrix in "parallel" CSR format you can use MatCreateMPIAIJWithArrays() to copy the matrix over to CSR format. It is my understanding that SPH can produce matrices with very unbalance sparsity. It is important to take this into account if you wish to run in parallel since if you end up with some processes having many more nonzeros than other processes you will get very poor performance. Barry > > With the best regards, > Massoud > From robert.annewandter at opengosim.com Mon Nov 21 12:47:23 2016 From: robert.annewandter at opengosim.com (Robert Annewandter) Date: Mon, 21 Nov 2016 18:47:23 +0000 Subject: [petsc-users] Access to 'step' in 'toil_ims.f90' and 'pm_toil_ims.f90' Message-ID: An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Mon Nov 21 13:10:25 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 21 Nov 2016 13:10:25 -0600 Subject: [petsc-users] PETSc for ISPH In-Reply-To: References: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> <95F49D17-B952-48EA-9212-301B1674DE9E@mcs.anl.gov> Message-ID: > On Nov 21, 2016, at 12:20 PM, Massoud Rezavand wrote: > > Thank you very much. > > Yes I am developing the new 3D version in Parallel with the PPM (the new generation OpenFPM, not released yet) library which generates the particles and decomposes the domain. > > I don't have the parallel matrix generation yet. In the old version I had CSR format and a vector of knowns (b). > So, should I use MatSetValuesStencil() ? MatSetValuesStencil is for finite differences on a structured grid. I don't think it makes sense for your application. You need to use MatMPIAIJSetPreallocation() and then MatSetValues() to put the entries in. > What do you recommend for creating the vector of knowns (b)? Just use VecCreateMPI() > > On the other hand, due to the convergence issues for millions of particles in ISPH, I have to use a preconditioner. In a paper I saw they have used BoomerAMG from HYPRE. Do you have any recommendation? We have many to try, it is not clear that any would be particularly good for SPH. Certainly try BoomerAMG > > I saw an example ( ex19.c) using BoomerAMG. Should I follow that? > > > PS: regarding the unbalance sparsity in SPH, yes in contrast to the mesh-based methods, the A matrix in ISPH is changing over the time but the number of non-zeros is defined by the number of neighboring particles which in most cases is constant. > > Cheers, > > Massoud > > > > On 11/21/2016 06:18 PM, Barry Smith wrote: >>> On Nov 21, 2016, at 10:33 AM, Massoud Rezavand >>> wrote: >>> >>> Dear all, >>> >>> I am going to use PETSc in an Incompressible SPH code to solve the pressure Poisson equation as a linear system of equations. >>> >>> In my old sequential code I used the PCG method or the BiCGSTAB with jacobi preconditioner. >>> I used to store the coefficient matrix (A) in CSR (AIJ) format and solve it. >>> >>> My question is that how should I import the CSR metrix and the known vector (b) into the library to be solved? Is there an example to show how to import and external system of eqs. into PETSc? >>> >> For sequential code it is straightforward. >> >> If you already have the matrix in CSR format you can call MatCreateSeqAIJWithArrays() to create the PETSc matrix without copying the data. You can use VecCreateSeqWithArray() to provide the vector. Or you can use VecPlaceArray() to use the array of vector values you provide. >> >> >>> In my case, the computational domain is decomposed by another library, so does it effect the performance of PETSc? >>> >> I read this to mean you want the new code to be parallel (but the old one is sequential)? >> >> If you don't currently have matrix generation in parallel I urge you strongly to directly use MatSetValues() to generate your matrix, do not first put the matrix entries into some kind of parallel CSR format. If you already have the matrix in "parallel" CSR format you can use MatCreateMPIAIJWithArrays() to copy the matrix over to CSR format. >> >> It is my understanding that SPH can produce matrices with very unbalance sparsity. It is important to take this into account if you wish to run in parallel since if you end up with some processes having many more nonzeros than other processes you will get very poor performance. >> >> >> Barry >> >> >> >>> With the best regards, >>> Massoud >>> >>> > From knepley at gmail.com Mon Nov 21 13:47:54 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 21 Nov 2016 13:47:54 -0600 Subject: [petsc-users] Access to 'step' in 'toil_ims.f90' and 'pm_toil_ims.f90' In-Reply-To: References: Message-ID: On Mon, Nov 21, 2016 at 12:47 PM, Robert Annewandter < robert.annewandter at opengosim.com> wrote: > Hi, > > Is there a way to access 'step' as used in the output log file : > > Step 35 Time= 1.00000E-03 Dt= 2.73903E-05 [d] snes_conv_reason: > 10, > > from within the subroutines ' TOilImsResidual(snes,xx,r,realization,ierr)' > and 'TOilImsJacobian(snes,xx,A,B,realization,ierr)' in 'toil_ims.f90', as > well as from within 'PMTOilImsCheckUpdatePre(this, > line_search,X,dX,changed,ierr)' in 'pm_toil_ims.f90'? > I am not sure why we should know about your subroutines. You can get the step inside a TSMonitor() because its an argument. Use http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/TS/TSMonitorSet.html to add a custom monitor. Thanks, Matt > I like to make sure that J, b and dx are taken from the same step. I can > do that if the filenames of the exports reflect step and NR iteration. The > problem is that, e.g. 'TOilImsResidual()' is called more often than is > 'TOilImsJacobian()', so using a simple counter which gets increased every > time when the subroutines are called doesn't help unfortunately. > > Thank you for any pointers! > > Robert > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Mon Nov 21 13:10:09 2016 From: jed at jedbrown.org (Jed Brown) Date: Mon, 21 Nov 2016 12:10:09 -0700 Subject: [petsc-users] Access to 'step' in 'toil_ims.f90' and 'pm_toil_ims.f90' In-Reply-To: References: Message-ID: <87twb07ipa.fsf@jedbrown.org> The files and functions you reference are not part of PETSc. Perhaps you can look at how they call PETSc. Robert Annewandter writes: > Hi, > > Is there a way to access 'step' as used in the output log file : > > ?Step???? 35 Time=? 1.00000E-03 Dt=? 2.73903E-05 [d] snes_conv_reason:?? 10, > > from within the subroutines ' TOilImsResidual(snes,xx,r,realization,ierr)' and > 'TOilImsJacobian(snes,xx,A,B,realization,ierr)' in 'toil_ims.f90', as well as > from within 'PMTOilImsCheckUpdatePre(this,line_search,X,dX,changed,ierr)' in > 'pm_toil_ims.f90'? > > I like to make sure that J, b and dx are taken from the same step. I can do > that if the filenames of the exports reflect step and NR iteration. The problem > is that, e.g. 'TOilImsResidual()' is called more often than is 'TOilImsJacobian > ()', so using a simple counter which gets increased every time when the > subroutines are called doesn't help unfortunately. > > Thank you for any pointers! > > Robert -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 800 bytes Desc: not available URL: From leejearl at 126.com Wed Nov 23 05:24:34 2016 From: leejearl at 126.com (leejearl) Date: Wed, 23 Nov 2016 19:24:34 +0800 Subject: [petsc-users] An question about DMPlexReconstructGradientsFVM Message-ID: <5791db82-1265-2a4e-f5b4-d7a642ae64fb@126.com> Hi all? I have an problem of using the routine PetscErrorCode DMPlexReconstructGradientsFVM(DM dm, Vec locX, Vec grad). I do not understant the parameters in the function. Can anyone help me with the examples of this routine? I have test many times, and I still can not understand how to get the parameters dm, locX, and grad. Thanks. leejearl From thronesf at gmail.com Wed Nov 23 14:57:49 2016 From: thronesf at gmail.com (Sharp Stone) Date: Wed, 23 Nov 2016 15:57:49 -0500 Subject: [petsc-users] Petsc Installation Error Message-ID: Hi folks, When I'm trying to configure Petsc, I get the errors: ld: targeted OS version does not support use of thread local variables in _MPIU_Thread_CS_exit_lockname_recursive_impl_ for architecture x86_64 collect2: error: ld returned 1 exit status make[2]: *** [lib/libmpich.la] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 The configure.log is attached. Thanks in advance! -- Best regards, Feng -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: configure.log Type: application/octet-stream Size: 1695813 bytes Desc: not available URL: From knepley at gmail.com Wed Nov 23 15:08:17 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 23 Nov 2016 15:08:17 -0600 Subject: [petsc-users] Petsc Installation Error In-Reply-To: References: Message-ID: On Wed, Nov 23, 2016 at 2:57 PM, Sharp Stone wrote: > Hi folks, > > When I'm trying to configure Petsc, I get the errors: > ld: targeted OS version does not support use of thread local variables in > _MPIU_Thread_CS_exit_lockname_recursive_impl_ for architecture x86_64 > collect2: error: ld returned 1 exit status > You have a bunch of link errors when building MPICH: gfortran: warning: couldn't understand kern.osversion '15.4.0 gfortran: warning: couldn't understand kern.osversion '15.4.0 gfortran: warning: couldn't understand kern.osversion '15.4.0 gfortran: warning: couldn't understand kern.osversion '15.4.0 gfortran: warning: couldn't understand kern.osversion '15.4.0 ld: warning: object file (src/binding/f90/.libs/mpi.o) was built for newer OSX version (10.11) than being linked (10.4) ld: warning: object file (src/binding/f90/.libs/mpi_constants.o) was built for newer OSX version (10.11) than being linked (10.4) ld: warning: object file (src/binding/f90/.libs/mpi_sizeofs.o) was built for newer OSX version (10.11) than being linked (10.4) ld: warning: object file (src/binding/f90/.libs/mpi_base.o) was built for newer OSX version (10.11) than being linked (10.4) It looks to me like you have bad configuration of your compiler/linker toolchain. Something is rotten in the state of gfortran. I suggest configuring without Fortran, --with-fc=0. If you need Fortran, you might have to build MPICH yourself, or fix your gfortran. Thanks, Matt > make[2]: *** [lib/libmpich.la] Error 1 > make[1]: *** [all-recursive] Error 1 > make: *** [all] Error 2 > > The configure.log is attached. Thanks in advance! > > -- > Best regards, > > Feng > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Wed Nov 23 15:24:33 2016 From: balay at mcs.anl.gov (Satish Balay) Date: Wed, 23 Nov 2016 15:24:33 -0600 Subject: [petsc-users] Petsc Installation Error In-Reply-To: References: Message-ID: Most likely you have upgraded xcode [and or OSX] - but not brew [which provides gfortran]. If you need fortran - suggest deleting and reinstalling brew [gfortran].. Satish On Wed, 23 Nov 2016, Matthew Knepley wrote: > On Wed, Nov 23, 2016 at 2:57 PM, Sharp Stone wrote: > > > Hi folks, > > > > When I'm trying to configure Petsc, I get the errors: > > ld: targeted OS version does not support use of thread local variables in > > _MPIU_Thread_CS_exit_lockname_recursive_impl_ for architecture x86_64 > > collect2: error: ld returned 1 exit status > > > > You have a bunch of link errors when building MPICH: > > gfortran: warning: couldn't understand kern.osversion '15.4.0 > gfortran: warning: couldn't understand kern.osversion '15.4.0 > gfortran: warning: couldn't understand kern.osversion '15.4.0 > gfortran: warning: couldn't understand kern.osversion '15.4.0 > gfortran: warning: couldn't understand kern.osversion '15.4.0 > ld: warning: object file (src/binding/f90/.libs/mpi.o) was built for newer > OSX version (10.11) than being linked (10.4) > ld: warning: object file (src/binding/f90/.libs/mpi_constants.o) was built > for newer OSX version (10.11) than being linked (10.4) > ld: warning: object file (src/binding/f90/.libs/mpi_sizeofs.o) was built > for newer OSX version (10.11) than being linked (10.4) > ld: warning: object file (src/binding/f90/.libs/mpi_base.o) was built for > newer OSX version (10.11) than being linked (10.4) > > It looks to me like you have bad configuration of your compiler/linker > toolchain. Something is rotten in the state of gfortran. > I suggest configuring without Fortran, --with-fc=0. If you need Fortran, > you might have to build MPICH yourself, or fix your > gfortran. > > Thanks, > > Matt > > > > make[2]: *** [lib/libmpich.la] Error 1 > > make[1]: *** [all-recursive] Error 1 > > make: *** [all] Error 2 > > > > The configure.log is attached. Thanks in advance! > > > > -- > > Best regards, > > > > Feng > > > > > > From rpgwars at wp.pl Wed Nov 23 16:57:50 2016 From: rpgwars at wp.pl (=?ISO-8859-2?Q?=A3ukasz_Kasza?=) Date: Wed, 23 Nov 2016 23:57:50 +0100 Subject: [petsc-users] Efficient MatMatSolve Message-ID: <58361eee1918c5.10102643@wp.pl> Dear PETSc Users, I want to compute approximate matrix product A^-1*B where A^-1 is approximated by ILU(0) of A matrix for sequential and parallel executions. For sequential code I can use KSP in preonly mode (PCILU works only for sequential code), get the ILU(0) by PCFactorGetMatrix and then call MatMatSolve. However the resulting matrix has to be in dense format because that's the way MatMatSolve works. In my case A^-1*B product is sparse for sure, because ILU(0) has the same sparsity pattern. Suppose that I will have a factored A matrix for parallel code as well. What is the best way to get the A^-1*B product without creating dense matrices? Is it even possible? Best Regards, Damian Goik From bsmith at mcs.anl.gov Wed Nov 23 17:15:50 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 23 Nov 2016 17:15:50 -0600 Subject: [petsc-users] Efficient MatMatSolve In-Reply-To: <58361eee1918c5.10102643@wp.pl> References: <58361eee1918c5.10102643@wp.pl> Message-ID: > On Nov 23, 2016, at 4:57 PM, ?ukasz Kasza wrote: > > Dear PETSc Users, > > I want to compute approximate matrix product A^-1*B where A^-1 is approximated by ILU(0) of A matrix for sequential and parallel executions. For sequential code I can use KSP in preonly mode (PCILU works only for sequential code), get the ILU(0) by PCFactorGetMatrix and then call MatMatSolve. However the resulting matrix has to be in dense format because that's the way MatMatSolve works. In my case A^-1*B product is sparse for sure, because ILU(0) has the same sparsity pattern. Even though your ILU(0) factorization of A is sparse the resulting A^-1*B will almost surely be dense since the triangular solves"fill" in the column vector entries in the result. > Suppose that I > will have a factored A matrix for parallel code as well. What is the best way to get the A^-1*B product without creating dense matrices? Is it even possible? Why do you want to form A^-1*B? Or do you want to just use A^-1*B in some other computation? Perhaps that can be done "matrix" free by not forming A^-1*B but instead doing matrix vector products of A^-1*B which will be cheap if you have an ILU(0) of A. Barry > > Best Regards, > Damian Goik > > > From thronesf at gmail.com Wed Nov 23 18:04:20 2016 From: thronesf at gmail.com (Sharp Stone) Date: Wed, 23 Nov 2016 19:04:20 -0500 Subject: [petsc-users] Petsc Profiling for Each Function In-Reply-To: References: Message-ID: Thanks Barry for the reply. When I use the option -log_view, I got the Petsc API function profiling posted as below. But I wonder is there any way for me to get the performance/execution profiling of the functions in the code, like in Xcode profiling, so that I would know which part needs special optimization? I now badly needs your instructions. Thank you very much in advance! ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- ./pStreamer on a arch-darwin-c-opt named rcc-dhcp-249-233.sr.unh.edu with 4 processors, by GPL Wed Nov 23 18:49:59 2016 Using Petsc Release Version 3.5.4, May, 23, 2015 Max Max/Min Avg Total Time (sec): 1.026e+02 1.00004 1.026e+02 Objects: 3.420e+02 1.00000 3.420e+02 Flops: 2.509e+10 1.00200 2.506e+10 1.002e+11 Flops/sec: 2.445e+08 1.00202 2.441e+08 9.764e+08 MPI Messages: 1.387e+04 1.99971 1.041e+04 4.163e+04 MPI Message Lengths: 2.783e+07 1.99971 2.006e+03 8.350e+07 MPI Reductions: 1.425e+04 1.00000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total counts %Total Avg %Total counts %Total 0: Main Stage: 1.0264e+02 100.0% 1.0022e+11 100.0% 4.163e+04 100.0% 2.006e+03 100.0% 1.425e+04 100.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flops: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent Avg. len: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flops in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage VecDot 6778 1.0 5.0633e+00 1.1 1.70e+09 1.0 0.0e+00 0.0e+00 6.8e+03 5 7 0 0 48 5 7 0 0 48 1345 VecDotNorm2 3389 1.0 3.1751e+00 1.3 1.70e+09 1.0 0.0e+00 0.0e+00 3.4e+03 3 7 0 0 24 3 7 0 0 24 2144 VecNorm 3571 1.0 2.1366e+00 1.1 8.98e+08 1.0 0.0e+00 0.0e+00 3.6e+03 2 4 0 0 25 2 4 0 0 25 1679 VecScale 49 1.0 1.2606e-02 1.2 6.16e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1952 VecCopy 157 1.0 4.5638e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 7140 1.0 5.1525e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 146 1.0 7.0036e-02 1.2 3.97e+07 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2266 VecAXPBYCZ 6778 1.0 4.9426e+00 1.2 3.41e+09 1.0 0.0e+00 0.0e+00 0.0e+00 4 14 0 0 0 4 14 0 0 0 2755 VecWAXPY 6785 1.0 3.9687e+00 1.0 1.71e+09 1.0 0.0e+00 0.0e+00 0.0e+00 4 7 0 0 0 4 7 0 0 0 1716 VecScatterBegin 6918 1.0 3.4263e-01 1.7 0.00e+00 0.0 4.2e+04 2.0e+03 0.0e+00 0 0100100 0 0 0100100 0 0 VecScatterEnd 6918 1.0 8.6652e+0029.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 MatMult 6869 1.0 2.6045e+01 1.5 7.76e+09 1.0 4.1e+04 2.0e+03 0.0e+00 21 31 99 99 0 21 31 99 99 0 1190 MatSolve 6960 1.0 1.7961e+01 1.0 7.86e+09 1.0 0.0e+00 0.0e+00 0.0e+00 17 31 0 0 0 17 31 0 0 0 1747 MatLUFactorNum 7 1.0 5.3501e-02 1.1 9.62e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 719 MatILUFactorSym 7 1.0 5.1423e-02 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyBegin 14 1.0 3.7722e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 2.8e+01 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyEnd 14 1.0 6.4600e-02 1.0 0.00e+00 0.0 8.4e+01 5.0e+02 5.6e+01 0 0 0 0 0 0 0 0 0 0 0 MatGetRowIJ 7 1.0 3.4150e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetOrdering 7 1.0 5.8947e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 14 1.0 3.9437e+00132.6 0.00e+00 0.0 0.0e+00 0.0e+00 8.4e+01 2 0 0 0 1 2 0 0 0 1 0 KSPSolve 91 1.0 6.6894e+01 1.2 2.51e+10 1.0 4.1e+04 2.0e+03 1.4e+04 59100 99 99 98 59100 99 99 98 1497 PCSetUp 14 1.0 1.1119e-01 1.1 9.62e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 346 PCSetUpOnBlocks 91 1.0 1.1087e-01 1.1 9.62e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 347 PCApply 6960 1.0 1.8604e+01 1.0 7.86e+09 1.0 0.0e+00 0.0e+00 0.0e+00 18 31 0 0 0 18 31 0 0 0 1687 TSStep 6 1.0 7.0114e+01 1.0 2.01e+10 1.0 3.3e+04 2.0e+03 1.1e+04 68 80 80 80 78 68 80 80 80 78 1146 TSFunctionEval 6 1.0 7.0102e+01 1.0 2.01e+10 1.0 3.3e+04 2.0e+03 1.1e+04 68 80 80 80 78 68 80 80 80 78 1146 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Vector 212 207 180438384 0 Vector Scatter 9 8 1014488 0 Matrix 28 28 147732508 0 Distributed Mesh 4 3 13776 0 Star Forest Bipartite Graph 8 6 4800 0 Discrete System 4 3 2376 0 Index Set 39 39 8087676 0 IS L to G Mapping 2 1 504596 0 Krylov Solver 15 15 17456 0 Preconditioner 15 15 14208 0 TSAdapt 1 1 1208 0 TS 1 1 1168 0 DMTS 1 1 712 0 SNES 1 1 1336 0 DMSNES 1 1 672 0 Viewer 1 0 0 0 ======================================================================================================================== Average time to get PetscTime(): 3.82e-08 Average time for MPI_Barrier(): 6.2797e-05 Average time for zero size MPI_Send(): 1.98967e-05 #PETSc Option Table entries: -log_view #End of PETSc Option Table entries On Wed, Oct 19, 2016 at 8:33 PM, Barry Smith wrote: > > To start you should just run the code with the ./configure option > --with-debugging=0 with the option -log_view this will give you the high > view of where it is spending the time. Feel free to email back the output. > From that you can focus on what parts are both taking a lot of time AND > running slowly and that gives a good idea of what needs to be optimized. > > Barry > > > On Oct 19, 2016, at 3:15 PM, Sharp Stone wrote: > > > > Dear all, > > > > Now I'm using a Petsc code which needs to be optimized. But after > trying, I still don't know how to get the profiling for each of the > function for each process. I mean, for each process, how should I know the > execution time for each function? > > > > Thanks! > > > > -- > > Best regards, > > > > Feng > > -- Best regards, Feng -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Wed Nov 23 18:24:22 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 23 Nov 2016 18:24:22 -0600 Subject: [petsc-users] Petsc Profiling for Each Function In-Reply-To: References: Message-ID: <42343399-C6C4-49E2-8318-79CAAED2CE81@mcs.anl.gov> The efficiency of the actual code looks ok, that is you are not going to suddenly make it go much faster by optimizing some piece of it. There are two things that are making it slower than ideal 1) 6960/91. = 76.48351648351648 the linear solver is using on average 76 iterations per solve. This is high. What is the problem you are solving? Have you tried -pc_type gamg to reduce the iteration counts? 2) The TSStep() is only taking 68 % of the runtime, meaning something else in your code is taking 32% of the time. Are you doing a lot of IO or something? Ideally your code that calls TSStep should be taking just a few percent of the time. Even if you halfed the time of the TSStep() your code would take a lot of time do to the 32% in your code. To specifically answer your question, you can easily run the code on one processor with Apples Instrumentation tool or with Intel's tool to see what functions are taking the most time but to repeat from above this won't help you much because the individual routines are already optimized. Barry > On Nov 23, 2016, at 6:04 PM, Sharp Stone wrote: > > Thanks Barry for the reply. When I use the option -log_view, I got the Petsc API function profiling posted as below. But I wonder is there any way for me to get the performance/execution profiling of the functions in the code, like in Xcode profiling, so that I would know which part needs special optimization? I now badly needs your instructions. Thank you very much in advance! > > > ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- > > ./pStreamer on a arch-darwin-c-opt named rcc-dhcp-249-233.sr.unh.edu with 4 processors, by GPL Wed Nov 23 18:49:59 2016 > Using Petsc Release Version 3.5.4, May, 23, 2015 > > Max Max/Min Avg Total > Time (sec): 1.026e+02 1.00004 1.026e+02 > Objects: 3.420e+02 1.00000 3.420e+02 > Flops: 2.509e+10 1.00200 2.506e+10 1.002e+11 > Flops/sec: 2.445e+08 1.00202 2.441e+08 9.764e+08 > MPI Messages: 1.387e+04 1.99971 1.041e+04 4.163e+04 > MPI Message Lengths: 2.783e+07 1.99971 2.006e+03 8.350e+07 > MPI Reductions: 1.425e+04 1.00000 > > Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) > e.g., VecAXPY() for real vectors of length N --> 2N flops > and VecAXPY() for complex vectors of length N --> 8N flops > > Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- > Avg %Total Avg %Total counts %Total Avg %Total counts %Total > 0: Main Stage: 1.0264e+02 100.0% 1.0022e+11 100.0% 4.163e+04 100.0% 2.006e+03 100.0% 1.425e+04 100.0% > > ------------------------------------------------------------------------------------------------------------------------ > See the 'Profiling' chapter of the users' manual for details on interpreting output. > Phase summary info: > Count: number of times phase was executed > Time and Flops: Max - maximum over all processors > Ratio - ratio of maximum to minimum over all processors > Mess: number of messages sent > Avg. len: average message length (bytes) > Reduct: number of global reductions > Global: entire computation > Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). > %T - percent time in this phase %F - percent flops in this phase > %M - percent messages in this phase %L - percent message lengths in this phase > %R - percent reductions in this phase > Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors) > ------------------------------------------------------------------------------------------------------------------------ > Event Count Time (sec) Flops --- Global --- --- Stage --- Total > Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s > ------------------------------------------------------------------------------------------------------------------------ > > --- Event Stage 0: Main Stage > > VecDot 6778 1.0 5.0633e+00 1.1 1.70e+09 1.0 0.0e+00 0.0e+00 6.8e+03 5 7 0 0 48 5 7 0 0 48 1345 > VecDotNorm2 3389 1.0 3.1751e+00 1.3 1.70e+09 1.0 0.0e+00 0.0e+00 3.4e+03 3 7 0 0 24 3 7 0 0 24 2144 > VecNorm 3571 1.0 2.1366e+00 1.1 8.98e+08 1.0 0.0e+00 0.0e+00 3.6e+03 2 4 0 0 25 2 4 0 0 25 1679 > VecScale 49 1.0 1.2606e-02 1.2 6.16e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1952 > VecCopy 157 1.0 4.5638e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecSet 7140 1.0 5.1525e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > VecAXPY 146 1.0 7.0036e-02 1.2 3.97e+07 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2266 > VecAXPBYCZ 6778 1.0 4.9426e+00 1.2 3.41e+09 1.0 0.0e+00 0.0e+00 0.0e+00 4 14 0 0 0 4 14 0 0 0 2755 > VecWAXPY 6785 1.0 3.9687e+00 1.0 1.71e+09 1.0 0.0e+00 0.0e+00 0.0e+00 4 7 0 0 0 4 7 0 0 0 1716 > VecScatterBegin 6918 1.0 3.4263e-01 1.7 0.00e+00 0.0 4.2e+04 2.0e+03 0.0e+00 0 0100100 0 0 0100100 0 0 > VecScatterEnd 6918 1.0 8.6652e+0029.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 > MatMult 6869 1.0 2.6045e+01 1.5 7.76e+09 1.0 4.1e+04 2.0e+03 0.0e+00 21 31 99 99 0 21 31 99 99 0 1190 > MatSolve 6960 1.0 1.7961e+01 1.0 7.86e+09 1.0 0.0e+00 0.0e+00 0.0e+00 17 31 0 0 0 17 31 0 0 0 1747 > MatLUFactorNum 7 1.0 5.3501e-02 1.1 9.62e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 719 > MatILUFactorSym 7 1.0 5.1423e-02 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatAssemblyBegin 14 1.0 3.7722e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 2.8e+01 0 0 0 0 0 0 0 0 0 0 0 > MatAssemblyEnd 14 1.0 6.4600e-02 1.0 0.00e+00 0.0 8.4e+01 5.0e+02 5.6e+01 0 0 0 0 0 0 0 0 0 0 0 > MatGetRowIJ 7 1.0 3.4150e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > MatGetOrdering 7 1.0 5.8947e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 > KSPSetUp 14 1.0 3.9437e+00132.6 0.00e+00 0.0 0.0e+00 0.0e+00 8.4e+01 2 0 0 0 1 2 0 0 0 1 0 > KSPSolve 91 1.0 6.6894e+01 1.2 2.51e+10 1.0 4.1e+04 2.0e+03 1.4e+04 59100 99 99 98 59100 99 99 98 1497 > PCSetUp 14 1.0 1.1119e-01 1.1 9.62e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 346 > PCSetUpOnBlocks 91 1.0 1.1087e-01 1.1 9.62e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 347 > PCApply 6960 1.0 1.8604e+01 1.0 7.86e+09 1.0 0.0e+00 0.0e+00 0.0e+00 18 31 0 0 0 18 31 0 0 0 1687 > TSStep 6 1.0 7.0114e+01 1.0 2.01e+10 1.0 3.3e+04 2.0e+03 1.1e+04 68 80 80 80 78 68 80 80 80 78 1146 > TSFunctionEval 6 1.0 7.0102e+01 1.0 2.01e+10 1.0 3.3e+04 2.0e+03 1.1e+04 68 80 80 80 78 68 80 80 80 78 1146 > ------------------------------------------------------------------------------------------------------------------------ > > Memory usage is given in bytes: > > Object Type Creations Destructions Memory Descendants' Mem. > Reports information only for process 0. > > --- Event Stage 0: Main Stage > > Vector 212 207 180438384 0 > Vector Scatter 9 8 1014488 0 > Matrix 28 28 147732508 0 > Distributed Mesh 4 3 13776 0 > Star Forest Bipartite Graph 8 6 4800 0 > Discrete System 4 3 2376 0 > Index Set 39 39 8087676 0 > IS L to G Mapping 2 1 504596 0 > Krylov Solver 15 15 17456 0 > Preconditioner 15 15 14208 0 > TSAdapt 1 1 1208 0 > TS 1 1 1168 0 > DMTS 1 1 712 0 > SNES 1 1 1336 0 > DMSNES 1 1 672 0 > Viewer 1 0 0 0 > ======================================================================================================================== > Average time to get PetscTime(): 3.82e-08 > Average time for MPI_Barrier(): 6.2797e-05 > Average time for zero size MPI_Send(): 1.98967e-05 > #PETSc Option Table entries: > -log_view > #End of PETSc Option Table entries > > On Wed, Oct 19, 2016 at 8:33 PM, Barry Smith wrote: > > To start you should just run the code with the ./configure option --with-debugging=0 with the option -log_view this will give you the high view of where it is spending the time. Feel free to email back the output. From that you can focus on what parts are both taking a lot of time AND running slowly and that gives a good idea of what needs to be optimized. > > Barry > > > On Oct 19, 2016, at 3:15 PM, Sharp Stone wrote: > > > > Dear all, > > > > Now I'm using a Petsc code which needs to be optimized. But after trying, I still don't know how to get the profiling for each of the function for each process. I mean, for each process, how should I know the execution time for each function? > > > > Thanks! > > > > -- > > Best regards, > > > > Feng > > > > > -- > Best regards, > > Feng From kuiper at mpia.de Thu Nov 24 14:24:02 2016 From: kuiper at mpia.de (Rolf Kuiper) Date: Thu, 24 Nov 2016 21:24:02 +0100 Subject: [petsc-users] How to get a matrix and vector for a coupled system of equations? Message-ID: <97FEE433-4779-4289-A3B6-4A7772799F59@mpia.de> Dear PETSc users, maybe this is an easy question, but I can?t find the information right away in the user?s guide nor online. What I am currently doing and which works fine: To solve a partial differential equation for the quantity q on a parallel distributed grid, which is represented by the Distributed Array MyDA, I am currently creating the associated sparse matrix for the KSP solver via DAGetMatrix(MyDA, MATMPIAIJ, &MyMatrix); The solution vector and right hand side vector are created via DACreateGlobalVector(MyDA, &MyRightHandSideVector); VecDuplicate(MyRightHandSideVector, &GlobalSolutionVector); The DA is constructed using DACreate3d() with the corresponding regular structured grid information. And here is my problem: Now, I would like to solve a coupled system of equations for the quantities q1 and q2 on the same grid. I.e., the matrix should just get the double number of rows and columns, the vectors contain twice the number of entries (e.g. first all q1s and then all q2s). And I would like to be sure that the entries of q1 and q2, which are associated with the same grid cell are located on the same processor. Is there already a pre-defined structures available (such as MATMPIAIJ) within PETSc to enlarge such a single equation to store the entries of coupled equations? Such as DACreateTwiceTheGlobalVector()? The equation is (simplified) of the form d/dt q1 + grad q2 = 0 d/dt q2 + f(q1) = 0 with an arbitrary function f depending on q1. Thanks a lot for your help in advance, Rolf -------------- next part -------------- An HTML attachment was scrubbed... URL: From dave.mayhem23 at gmail.com Thu Nov 24 15:30:32 2016 From: dave.mayhem23 at gmail.com (Dave May) Date: Thu, 24 Nov 2016 21:30:32 +0000 Subject: [petsc-users] How to get a matrix and vector for a coupled system of equations? In-Reply-To: <97FEE433-4779-4289-A3B6-4A7772799F59@mpia.de> References: <97FEE433-4779-4289-A3B6-4A7772799F59@mpia.de> Message-ID: When you create the DMDA, set the number of DOFs (degrees of freedom) per point to be 2 instead of 1. You must be using and ancient version of petsc given the function names you quoted. Consider upgrading to 3.7 Thanks, Dave On Thu, 24 Nov 2016 at 20:24, Rolf Kuiper wrote: > Dear PETSc users, > > maybe this is an easy question, but I can?t find the information right > away in the user?s guide nor online. > > What I am currently doing and which works fine: > To solve a partial differential equation for the quantity q on a parallel > distributed grid, which is represented by the Distributed Array MyDA, I am > currently creating the associated sparse matrix for the KSP solver via > DAGetMatrix(MyDA, MATMPIAIJ, &MyMatrix); > > The solution vector and right hand side vector are created via > DACreateGlobalVector(MyDA, &MyRightHandSideVector); > VecDuplicate(MyRightHandSideVector, &GlobalSolutionVector); > > The DA is constructed using DACreate3d() with the corresponding regular > structured grid information. > > And here is my problem: > Now, I would like to solve a coupled system of equations for the > quantities q1 and q2 on the same grid. I.e., the matrix should just get the > double number of rows and columns, the vectors contain twice the number of > entries (e.g. first all q1s and then all q2s). And I would like to be sure > that the entries of q1 and q2, which are associated with the same grid cell > are located on the same processor. > Is there already a pre-defined structures available (such as MATMPIAIJ) > within PETSc to enlarge such a single equation to store the entries of > coupled equations? Such as > DACreateTwiceTheGlobalVector()? > > The equation is (simplified) of the form > d/dt q1 + grad q2 = 0 > d/dt q2 + f(q1) = 0 > with an arbitrary function f depending on q1. > > Thanks a lot for your help in advance, > Rolf > -------------- next part -------------- An HTML attachment was scrubbed... URL: From rpgwars at wp.pl Fri Nov 25 06:21:13 2016 From: rpgwars at wp.pl (=?ISO-8859-2?Q?=A3ukasz_Kasza?=) Date: Fri, 25 Nov 2016 13:21:13 +0100 Subject: [petsc-users] Odp: Re: Efficient MatMatSolve Message-ID: <58382cb9231927.56491232@wp.pl> You are absolutely right, thank you Dnia Czwartek, 24 Listopada 2016 00:15 Barry Smith napisa?(a) > > > On Nov 23, 2016, at 4:57 PM, ?ukasz Kasza wrote: > > > > Dear PETSc Users, > > > > I want to compute approximate matrix product A^-1*B where A^-1 is approximated by ILU(0) of A matrix for sequential and parallel executions. For sequential code I can use KSP in preonly mode (PCILU works only for sequential code), get the ILU(0) by PCFactorGetMatrix and then call MatMatSolve. However the resulting matrix has to be in dense format because that's the way MatMatSolve works. In my case A^-1*B product is sparse for sure, because ILU(0) has the same sparsity pattern. > > Even though your ILU(0) factorization of A is sparse the resulting A^-1*B will almost surely be dense since the triangular solves"fill" in the column vector entries in the result. > > > Suppose that I > > will have a factored A matrix for parallel code as well. What is the best way to get the A^-1*B product without creating dense matrices? Is it even possible? > > Why do you want to form A^-1*B? Or do you want to just use A^-1*B in some other computation? Perhaps that can be done "matrix" free by not forming A^-1*B but instead doing matrix vector products of A^-1*B which will be cheap if you have an ILU(0) of A. > > Barry > > > > > Best Regards, > > Damian Goik > > > > > > From leejearl at 126.com Fri Nov 25 08:43:17 2016 From: leejearl at 126.com (leejearl) Date: Fri, 25 Nov 2016 22:43:17 +0800 Subject: [petsc-users] What are the differences between ex11.c and ex11_sa.c Message-ID: Hello, Petsc developer: I find two files ex11.c and ex11_sa.c in the directory of "/petsc/src/ts/examples/tutorials". Can you tell me what are the differences between them? What is the meaning of the ?suffix?? Thanks? leejearl From knepley at gmail.com Fri Nov 25 08:53:39 2016 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 25 Nov 2016 08:53:39 -0600 Subject: [petsc-users] What are the differences between ex11.c and ex11_sa.c In-Reply-To: References: Message-ID: On Fri, Nov 25, 2016 at 8:43 AM, leejearl wrote: > Hello, Petsc developer: > > I find two files ex11.c and ex11_sa.c in the directory of > "/petsc/src/ts/examples/tutorials". > > Can you tell me what are the differences between them? What is the meaning > of the ?suffix?? > I think Jed wanted his original version, but I don'y know what _sa means. Thanks, Matt > Thanks? > > leejearl > > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From leejearl at 126.com Fri Nov 25 09:09:42 2016 From: leejearl at 126.com (leejearl) Date: Fri, 25 Nov 2016 23:09:42 +0800 Subject: [petsc-users] What are the differences between ex11.c and ex11_sa.c In-Reply-To: References: Message-ID: <1413b6c4-759f-913f-4a5c-bdd9994ae5dd@126.com> Hi, Matt: Thank you for your kind reply, and I can not make it. I replace the code in the routine SetInitialCondition in ex11.c as #undef __FUNCT__ #define __FUNCT__ "SetInitialCondition" PetscErrorCode SetInitialCondition(DM dm, Vec X, User user) { DM dmCell; Model mod = user->model; Vec cellgeom; const PetscScalar *cgeom; PetscScalar *x; PetscInt cStart, cEnd, cEndInterior, c; PetscErrorCode ierr; PetscFunctionBeginUser; ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); ierr = DMPlexTSGetGeometryFVM(dm, NULL, &cellgeom, NULL);CHKERRQ(ierr); ierr = VecGetDM(cellgeom, &dmCell);CHKERRQ(ierr); ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); ierr = VecGetArrayRead(cellgeom, &cgeom);CHKERRQ(ierr); ierr = VecGetArray(X, &x);CHKERRQ(ierr); for (c = cStart; c < cEndInterior; ++c) { const PetscFVCellGeom *cg; PetscScalar *xc; ierr = DMPlexPointLocalRead(dmCell,c,cgeom,&cg);CHKERRQ(ierr); ierr = DMPlexPointGlobalRef(dm,c,x,&xc);CHKERRQ(ierr); /*if (xc) {ierr = (*mod->solution)(mod,0.0,cg->centroid,xc,mod->solutionctx);CHKERRQ(ierr);}*/ xc[0] = =1.0; xc[1] = =2.0; xc[2] = =3.0; xc[3] = =4.0; } ierr = VecRestoreArrayRead(cellgeom, &cgeom);CHKERRQ(ierr); ierr = VecRestoreArray(X, &x);CHKERRQ(ierr); PetscFunctionReturn(0); } I find it works in serial computation. Can you tell me whether I have a wrong use of the xc in the routine? Thanks leejearl On 2016?11?25? 22:53, Matthew Knepley wrote: > On Fri, Nov 25, 2016 at 8:43 AM, leejearl > wrote: > > Hello, Petsc developer: > > I find two files ex11.c and ex11_sa.c in the directory of > "/petsc/src/ts/examples/tutorials". > > Can you tell me what are the differences between them? What is the > meaning of the ?suffix?? > > > I think Jed wanted his original version, but I don'y know what _sa means. > > Thanks, > > Matt > > Thanks? > > leejearl > > > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Fri Nov 25 10:03:30 2016 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 25 Nov 2016 10:03:30 -0600 Subject: [petsc-users] What are the differences between ex11.c and ex11_sa.c In-Reply-To: <1413b6c4-759f-913f-4a5c-bdd9994ae5dd@126.com> References: <1413b6c4-759f-913f-4a5c-bdd9994ae5dd@126.com> Message-ID: On Fri, Nov 25, 2016 at 9:09 AM, leejearl wrote: > Hi, Matt: > Thank you for your kind reply, and I can not make it. > I replace the code in the routine SetInitialCondition in ex11.c as > > #undef __FUNCT__ > #define __FUNCT__ "SetInitialCondition" > PetscErrorCode SetInitialCondition(DM dm, Vec X, User user) > { > DM dmCell; > Model mod = user->model; > Vec cellgeom; > const PetscScalar *cgeom; > PetscScalar *x; > PetscInt cStart, cEnd, cEndInterior, c; > PetscErrorCode ierr; > > PetscFunctionBeginUser; > ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, > NULL);CHKERRQ(ierr); > ierr = DMPlexTSGetGeometryFVM(dm, NULL, &cellgeom, NULL);CHKERRQ(ierr); > ierr = VecGetDM(cellgeom, &dmCell);CHKERRQ(ierr); > ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); > ierr = VecGetArrayRead(cellgeom, &cgeom);CHKERRQ(ierr); > ierr = VecGetArray(X, &x);CHKERRQ(ierr); > for (c = cStart; c < cEndInterior; ++c) { > const PetscFVCellGeom *cg; > PetscScalar *xc; > > ierr = DMPlexPointLocalRead(dmCell,c,cgeom,&cg);CHKERRQ(ierr); > ierr = DMPlexPointGlobalRef(dm,c,x,&xc);CHKERRQ(ierr); > /*if (xc) {ierr = (*mod->solution)(mod,0.0,cg-> > centroid,xc,mod->solutionctx);CHKERRQ(ierr);}*/ > xc[0] = =1.0; > xc[1] = =2.0; > xc[2] = =3.0; > xc[3] = =4.0; > } > ierr = VecRestoreArrayRead(cellgeom, &cgeom);CHKERRQ(ierr); > ierr = VecRestoreArray(X, &x);CHKERRQ(ierr); > PetscFunctionReturn(0); > } > > I find it works in serial computation. Can you tell me whether I have a > wrong use of the xc in the routine? > If you want to initialize 4 fields to the constants 1, 2, 3, 4 then this should work. Matt > Thanks > > leejearl > > On 2016?11?25? 22:53, Matthew Knepley wrote: > > On Fri, Nov 25, 2016 at 8:43 AM, leejearl wrote: > >> Hello, Petsc developer: >> >> I find two files ex11.c and ex11_sa.c in the directory of >> "/petsc/src/ts/examples/tutorials". >> >> Can you tell me what are the differences between them? What is the >> meaning of the ?suffix?? >> > > I think Jed wanted his original version, but I don'y know what _sa means. > > Thanks, > > Matt > > >> Thanks? >> >> leejearl >> >> >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From arthursoprano at gmail.com Fri Nov 25 14:38:03 2016 From: arthursoprano at gmail.com (Arthur Besen Soprano) Date: Fri, 25 Nov 2016 18:38:03 -0200 Subject: [petsc-users] SNES Multblock type Message-ID: Hi, I was just recently checking some of snes sources code and found a src\snes\impls\multiblock\multiblock.c which seemed to be a Non-linear (SNES) equivalent of the fieldsplit for linear problems (KSP). However I was not able to use it and did not see any options available with the "-help " argument. My question is: Is this module disabled? If not, how can I use it? (using -snes_type multiblock or -npc_snes_type multiblock does not work...) Thanks, Arthur -- Arthur B. Soprano -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Fri Nov 25 15:13:15 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 25 Nov 2016 15:13:15 -0600 Subject: [petsc-users] SNES Multblock type In-Reply-To: References: Message-ID: <9D2ABF46-F068-4BE0-B3BE-3691CD8A7D3B@mcs.anl.gov> > On Nov 25, 2016, at 2:38 PM, Arthur Besen Soprano wrote: > > Hi, > > I was just recently checking some of snes sources code and found a src\snes\impls\multiblock\multiblock.c which seemed to be a Non-linear (SNES) equivalent of the fieldsplit for linear problems (KSP). Yes it was an attempt to be something similar. > However I was not able to use it and did not see any options available with the "-help " argument. > > My question is: Is this module disabled? If not, how can I use it? > > (using -snes_type multiblock or -npc_snes_type multiblock does not work...) It is not really functional at the moment. The only way for you to use it is to dig through the code to understand it and likely "fix it", that is change the code to do what it should do (note that it may not be clear what it should do). It also might be simpler to write a new SNESFIELDSPLIT that mimics PCFIELDPLIT We always welcome contributions. Barry > > Thanks, > > Arthur > > -- > Arthur B. Soprano From knepley at gmail.com Fri Nov 25 19:02:42 2016 From: knepley at gmail.com (Matthew Knepley) Date: Fri, 25 Nov 2016 19:02:42 -0600 Subject: [petsc-users] SNES Multblock type In-Reply-To: <9D2ABF46-F068-4BE0-B3BE-3691CD8A7D3B@mcs.anl.gov> References: <9D2ABF46-F068-4BE0-B3BE-3691CD8A7D3B@mcs.anl.gov> Message-ID: On Fri, Nov 25, 2016 at 3:13 PM, Barry Smith wrote: > > > On Nov 25, 2016, at 2:38 PM, Arthur Besen Soprano < > arthursoprano at gmail.com> wrote: > > > > Hi, > > > > I was just recently checking some of snes sources code and found a > src\snes\impls\multiblock\multiblock.c which seemed to be a Non-linear > (SNES) equivalent of the fieldsplit for linear problems (KSP). > > Yes it was an attempt to be something similar. > > > However I was not able to use it and did not see any options available > with the "-help " argument. > > > > My question is: Is this module disabled? If not, how can I use it? > > > > (using -snes_type multiblock or -npc_snes_type multiblock does not > work...) > > It is not really functional at the moment. The only way for you to use > it is to dig through the code to understand it and likely "fix it", that is > change the code to do what it should do (note that it may not be clear what > it should do). It also might be simpler to write a new SNESFIELDSPLIT that > mimics PCFIELDPLIT We always welcome contributions. A reason not to base it on FieldSplit is that this serializes the partitions, but we really want them to run in parallel, which is why I used ASM as a model for MultiBlock. Matt > > Barry > > > > > Thanks, > > > > Arthur > > > > -- > > Arthur B. Soprano > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Fri Nov 25 19:17:58 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Fri, 25 Nov 2016 19:17:58 -0600 Subject: [petsc-users] SNES Multblock type In-Reply-To: References: <9D2ABF46-F068-4BE0-B3BE-3691CD8A7D3B@mcs.anl.gov> Message-ID: > On Nov 25, 2016, at 7:02 PM, Matthew Knepley wrote: > > On Fri, Nov 25, 2016 at 3:13 PM, Barry Smith wrote: > > > On Nov 25, 2016, at 2:38 PM, Arthur Besen Soprano wrote: > > > > Hi, > > > > I was just recently checking some of snes sources code and found a src\snes\impls\multiblock\multiblock.c which seemed to be a Non-linear (SNES) equivalent of the fieldsplit for linear problems (KSP). > > Yes it was an attempt to be something similar. > > > However I was not able to use it and did not see any options available with the "-help " argument. > > > > My question is: Is this module disabled? If not, how can I use it? > > > > (using -snes_type multiblock or -npc_snes_type multiblock does not work...) > > It is not really functional at the moment. The only way for you to use it is to dig through the code to understand it and likely "fix it", that is change the code to do what it should do (note that it may not be clear what it should do). It also might be simpler to write a new SNESFIELDSPLIT that mimics PCFIELDPLIT We always welcome contributions. > > A reason not to base it on FieldSplit is that this serializes the partitions, but we really want them to run in parallel, which is why > I used ASM as a model for MultiBlock. This isn't clear when the code has things like PetscInt nfields; /* If block is defined on a DA, the number of DA fields */ PetscInt *fields; /* If block is defined on a DA, the list of DA fields */ Perhaps multiblock was too ambitious since it seems to encompass both subdomain and fieldsplit decompositions inside it. Perhaps they belong in separate SNESXXX. From multiblock.c char *name; /* Block name */ PetscInt nfields; /* If block is defined on a DA, the number of DA fields */ PetscInt *fields; /* If block is defined on a DA, the list of DA fields */ IS is; /* Index sets defining the block */ VecScatter sctx; /* Scatter mapping global Vec to blockVec */ SNES snes; /* Solver for this block */ Vec x; BlockDesc next, previous; }; typedef struct { PetscBool issetup; /* Flag is true after the all ISs and operators have been defined */ PetscBool defined; /* Flag is true after the blocks have been defined, to prevent more blocks from being added */ PetscBool defaultblocks; /* Flag is true for a system with a set of 'k' scalar fields with the same layout (and bs = k) */ PetscInt numBlocks; /* Number of blocks (can be fields, domains, etc.) */ PetscInt bs; /* Block size for IS, Vec and Mat structures */ PCCompositeType type; /* Solver combination method (additive, multiplicative, etc.) */ BlockDesc blocks; /* Linked list of block descriptors */ I'm not sure where MultiBlock fits in Note there are SNESNASM and SNESASPIN which appear to be other approaches to ASM for nonlinear problems. Barry > > Matt > > > Barry > > > > > Thanks, > > > > Arthur > > > > -- > > Arthur B. Soprano > > > > > -- > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. > -- Norbert Wiener From popov at uni-mainz.de Sat Nov 26 05:38:01 2016 From: popov at uni-mainz.de (Anton Popov) Date: Sat, 26 Nov 2016 12:38:01 +0100 Subject: [petsc-users] SuperLU_dist issue in 3.7.4 In-Reply-To: References: <33127b2c-a0b4-bda0-bfa7-c7ebeed6b0ba@uni-mainz.de> <94801705-937C-4D8D-BDCE-3E1AEAA4BCB4@mcs.anl.gov> <953ef0f8-b2bf-c152-9a6a-9927f0f47a24@uni-mainz.de> <4292667a-fda6-dafd-c8f6-44e8130f042a@uni-mainz.de> Message-ID: <5e86284b-c6b6-4acb-6aa3-08d74f8a2f15@uni-mainz.de> Hong, I checked out & compiled your new branch: hzhang/fix-superlu_dist-reuse-factornumeric. Unfortunately it did not solve the problem. Sorry. On 11/21/2016 04:43 AM, Hong wrote: > Anton, > I pushed a fix > https://bitbucket.org/petsc/petsc/commits/28865de08051eb99557d70672c208e14da23c8b1 > in branch hzhang/fix-superlu_dist-reuse-factornumeric. > Can you give it a try to see if it works? > I do not have an example which produces your problem. > > In your email, you asked "Setting Options.Fact = DOFACT for all > factorizations is currently impossible via PETSc interface. > The user is expected to choose some kind of reuse model. > If you could add it, I (and other users probably too) would really > appreciate that." > > We do not allow user set superlu' Options.Fact = DOFACT. If user > changes matrix structure, then user must call > KSPSetOperators() -> call symbolic matrix factorization again, in > which we set Options.Fact = DOFACT. I have a conceptual question. How can sparsity (column) permutation be reused if it's applied on top of the equilibration (row) permutation? Symbolic factorization should be repeated anyway. Does it run in some kind of faster update mode in this case? Please correct me if I misunderstand something. I would still appreciate the full factorization even for the same pattern without destroying KSP/PC object (just as a custom option). > > Hong Thanks a lot, Anton -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Sun Nov 27 12:33:55 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Sun, 27 Nov 2016 12:33:55 -0600 Subject: [petsc-users] Argonne Applied Math & Numerical Software is hiring at all levels! References: <1c280cba-875b-b62b-94fc-44e98cc39c40@anl.gov> Message-ID: The Mathematics and Computer Science Division at Argonne National Laboratory has multiple new openings for researchers at all career levels (from postdoctoral associates to senior staff researchers and software developers). The openings span innovative areas of computer science and applied mathematics, including novel algorithms, analysis techniques embodied in open-source software, data-intensive science, and emerging hardware architectures. The following applied mathematics areas are of special interest: ? Nonlinear optimization, including mixed-integer, multiobjective, stochastic/robust, PDE-constrained, simulation-based, dynamics, derivative-free, and parallel/concurrent optimization ? Data assimilation and inverse problems ? High-order methods for PDEs/CFD, including spectral element methods ? Numerical linear algebra focusing on highly scalable preconditioners, including matrix-free methods ? Machine learning, data analysis, and applied statistics ? Numerical methods for ordinary and partial differential equations, including error estimators and adjoints ? Statistical inference and analysis, sampling, and spectral estimation ? Stochastic processes and stochastic differential equations ? 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Feel free to contact members of these groups directly by email with specific questions. -------------- next part -------------- An HTML attachment was scrubbed... URL: From lingdeer at gmail.com Sun Nov 27 23:13:50 2016 From: lingdeer at gmail.com (Elaine Tang) Date: Mon, 28 Nov 2016 00:13:50 -0500 Subject: [petsc-users] error with libpetsc.so.3.7.4 during make test Message-ID: I finish configured and make petsc on Cygwin. Here are the last few lines of the make output: CC arch-mswin-c-debug/obj/src/tao/linesearch/impls/owarmijo/owarmijo.o CC arch-mswin-c-debug/obj/src/tao/constrained/impls/ipm/ipm.o CC arch-mswin-c-debug/obj/src/tao/linesearch/impls/unit/unit.o CC arch-mswin-c-debug/obj/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.o CC arch-mswin-c-debug/obj/src/tao/linesearch/interface/dlregis_taolinesearch.o CC arch-mswin-c-debug/obj/src/tao/linesearch/interface/ftn-auto/taolinesearchf.o CC arch-mswin-c-debug/obj/src/tao/linesearch/interface/taolinesearch.o CC arch-mswin-c-debug/obj/src/tao/linesearch/interface/ftn-custom/ztaolinesearchf.o CC arch-mswin-c-debug/obj/src/tao/leastsquares/impls/pounders/gqt.o CC arch-mswin-c-debug/obj/src/tao/leastsquares/impls/pounders/pounders.o CLINKER /home/Elaine/petsc-3.7.4/arch-mswin-c-debug/lib/libpetsc.so.3.7.4 make[2]: Leaving directory '/home/Elaine/petsc-3.7.4' ========================================= make[1]: Leaving directory '/home/Elaine/petsc-3.7.4' Now to check if the libraries are working do: make PETSC_DIR=/home/Elaine/petsc-3.7.4 PETSC_ARCH=arch-mswin-c-debug test ========================================= Then I did: $ make PETSC_DIR=/home/Elaine/petsc-3.7.4 PETSC_ARCH=arch-mswin-c-debug test Output is: Running test examples to verify correct installation Using PETSC_DIR=/home/Elaine/petsc-3.7.4 and PETSC_ARCH=arch-mswin-c-debug Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html C:/cygwin64/home/Elaine/petsc-3.7.4/src/snes/examples/tutorials/ex19.exe: error while loading shared libraries: libpetsc.so.3.7.4: cannot open shared object file: No such file or directory ------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- -------------------------------------------------------------------------- mpiexec detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[46069,1],0] Exit code: 127 -------------------------------------------------------------------------- Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI processes See http://www.mcs.anl.gov/petsc/documentation/faq.html ------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- C:/cygwin64/home/Elaine/petsc-3.7.4/src/snes/examples/tutorials/ex19.exe: error while loading shared libraries: libpetsc.so.3.7.4: cannot open shared object file: No such file or directory C:/cygwin64/home/Elaine/petsc-3.7.4/src/snes/examples/tutorials/ex19.exe: error while loading shared libraries: libpetsc.so.3.7.4: cannot open shared object file: No such file or directory Possible error running Fortran example src/snes/examples/tutorials/ex5f with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html C:/cygwin64/home/Elaine/petsc-3.7.4/src/snes/examples/tutorials/ex5f.exe: error while loading shared libraries: libpetsc.so.3.7.4: cannot open shared object file: No such file or directory ------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- -------------------------------------------------------------------------- mpiexec detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[38897,1],0] Exit code: 127 -------------------------------------------------------------------------- Completed test examples ========================================= Now to evaluate the computer systems you plan use - do: make PETSC_DIR=/home/Elaine/petsc-3.7.4 PETSC_ARCH=arch-mswin-c-debug streams ------------------------------------------------------------------------------------------------------------------------------------------------- When I navigate to /home/Elaine/petsc-3.7.4/arch-mswin-c-debug/lib/ I did find libpetsc.so.3.7.4 Why is make not able to locate it? Thanks! Elaine -------------- next part -------------- An HTML attachment was scrubbed... URL: From balay at mcs.anl.gov Mon Nov 28 00:15:06 2016 From: balay at mcs.anl.gov (Satish Balay) Date: Mon, 28 Nov 2016 00:15:06 -0600 Subject: [petsc-users] error with libpetsc.so.3.7.4 during make test In-Reply-To: References: Message-ID: On windows - you need to setup PATH to the location of dll. i.e PATH=$PATH:/home/Elaine/petsc-3.7.4/arch-mswin-c-debug/lib make PETSC_DIR=/home/Elaine/petsc-3.7.4 PETSC_ARCH=arch-mswin-c-debug test However fortran examples will fail with a dll build. In this case - its best to rebuild using configure option --with-shared-libraries=0 Satish On Sun, 27 Nov 2016, Elaine Tang wrote: > I finish configured and make petsc on Cygwin. > > Here are the last few lines of the make output: > > > > CC > arch-mswin-c-debug/obj/src/tao/linesearch/impls/owarmijo/owarmijo.o > > CC arch-mswin-c-debug/obj/src/tao/constrained/impls/ipm/ipm.o > > CC arch-mswin-c-debug/obj/src/tao/linesearch/impls/unit/unit.o > > CC > arch-mswin-c-debug/obj/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.o > > CC > arch-mswin-c-debug/obj/src/tao/linesearch/interface/dlregis_taolinesearch.o > > CC > arch-mswin-c-debug/obj/src/tao/linesearch/interface/ftn-auto/taolinesearchf.o > > CC > arch-mswin-c-debug/obj/src/tao/linesearch/interface/taolinesearch.o > > CC > arch-mswin-c-debug/obj/src/tao/linesearch/interface/ftn-custom/ztaolinesearchf.o > > CC > arch-mswin-c-debug/obj/src/tao/leastsquares/impls/pounders/gqt.o > > CC > arch-mswin-c-debug/obj/src/tao/leastsquares/impls/pounders/pounders.o > > CLINKER > /home/Elaine/petsc-3.7.4/arch-mswin-c-debug/lib/libpetsc.so.3.7.4 > > > > make[2]: Leaving directory '/home/Elaine/petsc-3.7.4' > > ========================================= > > make[1]: Leaving directory '/home/Elaine/petsc-3.7.4' > > Now to check if the libraries are working do: > > make PETSC_DIR=/home/Elaine/petsc-3.7.4 PETSC_ARCH=arch-mswin-c-debug test > > ========================================= > > > > Then I did: > > > > $ make PETSC_DIR=/home/Elaine/petsc-3.7.4 PETSC_ARCH=arch-mswin-c-debug test > > > > Output is: > > > > Running test examples to verify correct installation > > Using PETSC_DIR=/home/Elaine/petsc-3.7.4 and PETSC_ARCH=arch-mswin-c-debug > > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI > process > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > C:/cygwin64/home/Elaine/petsc-3.7.4/src/snes/examples/tutorials/ex19.exe: > error while loading shared libraries: libpetsc.so.3.7.4: cannot open shared > object file: No such file or directory > > ------------------------------------------------------- > > Primary job terminated normally, but 1 process returned > > a non-zero exit code.. Per user-direction, the job has been aborted. > > ------------------------------------------------------- > > -------------------------------------------------------------------------- > > mpiexec detected that one or more processes exited with non-zero status, > thus causing > > the job to be terminated. The first process to do so was: > > > > Process name: [[46069,1],0] > > Exit code: 127 > > -------------------------------------------------------------------------- > > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI > processes > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > ------------------------------------------------------- > > Primary job terminated normally, but 1 process returned > > a non-zero exit code.. Per user-direction, the job has been aborted. > > ------------------------------------------------------- > > C:/cygwin64/home/Elaine/petsc-3.7.4/src/snes/examples/tutorials/ex19.exe: > error while loading shared libraries: libpetsc.so.3.7.4: cannot open shared > object file: No such file or directory > > C:/cygwin64/home/Elaine/petsc-3.7.4/src/snes/examples/tutorials/ex19.exe: > error while loading shared libraries: libpetsc.so.3.7.4: cannot open shared > object file: No such file or directory > > Possible error running Fortran example src/snes/examples/tutorials/ex5f > with 1 MPI process > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > C:/cygwin64/home/Elaine/petsc-3.7.4/src/snes/examples/tutorials/ex5f.exe: > error while loading shared libraries: libpetsc.so.3.7.4: cannot open shared > object file: No such file or directory > > ------------------------------------------------------- > > Primary job terminated normally, but 1 process returned > > a non-zero exit code.. Per user-direction, the job has been aborted. > > ------------------------------------------------------- > > -------------------------------------------------------------------------- > > mpiexec detected that one or more processes exited with non-zero status, > thus causing > > the job to be terminated. The first process to do so was: > > > > Process name: [[38897,1],0] > > Exit code: 127 > > -------------------------------------------------------------------------- > > Completed test examples > > ========================================= > > Now to evaluate the computer systems you plan use - do: > > make PETSC_DIR=/home/Elaine/petsc-3.7.4 PETSC_ARCH=arch-mswin-c-debug > streams > > > > ------------------------------------------------------------------------------------------------------------------------------------------------- > > When I navigate to /home/Elaine/petsc-3.7.4/arch-mswin-c-debug/lib/ I did > find libpetsc.so.3.7.4 > > Why is make not able to locate it? > > > > > Thanks! > > Elaine > From kuiper at mpia.de Mon Nov 28 04:43:57 2016 From: kuiper at mpia.de (Rolf Kuiper) Date: Mon, 28 Nov 2016 11:43:57 +0100 Subject: [petsc-users] How to get a matrix and vector for a coupled system of equations? In-Reply-To: References: <97FEE433-4779-4289-A3B6-4A7772799F59@mpia.de> Message-ID: <9B00DE97-7300-400D-8CF4-2A5DFB146106@mpia.de> Hi Dave, Thanks a lot for your prompt reply! This is even easier than I thought (and that is most likely the reason, why I could not think into this direction) :) And yes, I might/should upgrade our PETSc version used (3.1), but it will take me some days to check the full code package. Now, I will create my DA (now in 3.6 called DMDA) for the coupled system via DACreate3d(PETSC_COMM_WORLD, Periodicity, DA_STENCIL_BOX, Nx, Ny, Nz, Px, Py, Pz, 4, 1, lx, ly, lz, &MyDA); instead of DACreate3d(PETSC_COMM_WORLD, Periodicity, DA_STENCIL_BOX, Nx, Ny, Nz, Px, Py, Pz, 1, 1, lx, ly, lz, &MyDA); which I have used for the single equation. I would like to ask one follow-up question: Currently, I loop over my matrix (and vectors) via three for-loops over the 3 spatial directions, and set the columns indices in the following way: for(k){ row.k = k; col[0].k = k; col[1].k = k; col[2].k = k; col[3].k = k; col[4].k = k+1; col[5].k = k-1; for(j){ row.j = j; col[0].j = j; col[1].j = j; col[2].j = j+1; col[3].j = j-1; col[4].j = j; col[5].j = j; for(i){ row.i = i; col[0].i = i+1; col[1].i = i-1; col[2].i = i; col[3].i = i; col[4].i = i; col[5].i = i; Now for the coupled equations, I should overall additionally loop over the number of DOFs (just 2 in my previous email example). Could you give me an easy example or pseudo-code for the associated assignment of columns (I have the same stencil in each of the submatrices, so for the 2 DOFs in 3D, I would get 7+6=13 column entries per row)? Or can you link me to an existing example within the PETSc help? Again, Thanks a lot! Rolf > Am 24.11.2016 um 22:30 schrieb Dave May : > > When you create the DMDA, set the number of DOFs (degrees of freedom) per point to be 2 instead of 1. > > You must be using and ancient version of petsc given the function names you quoted. Consider upgrading to 3.7 > > Thanks, > Dave > > On Thu, 24 Nov 2016 at 20:24, Rolf Kuiper > wrote: > Dear PETSc users, > > maybe this is an easy question, but I can?t find the information right away in the user?s guide nor online. > > What I am currently doing and which works fine: > To solve a partial differential equation for the quantity q on a parallel distributed grid, which is represented by the Distributed Array MyDA, I am currently creating the associated sparse matrix for the KSP solver via > DAGetMatrix(MyDA, MATMPIAIJ, &MyMatrix); > > The solution vector and right hand side vector are created via > DACreateGlobalVector(MyDA, &MyRightHandSideVector); > VecDuplicate(MyRightHandSideVector, &GlobalSolutionVector); > > The DA is constructed using DACreate3d() with the corresponding regular structured grid information. > > And here is my problem: > Now, I would like to solve a coupled system of equations for the quantities q1 and q2 on the same grid. I.e., the matrix should just get the double number of rows and columns, the vectors contain twice the number of entries (e.g. first all q1s and then all q2s). And I would like to be sure that the entries of q1 and q2, which are associated with the same grid cell are located on the same processor. > Is there already a pre-defined structures available (such as MATMPIAIJ) within PETSc to enlarge such a single equation to store the entries of coupled equations? Such as > DACreateTwiceTheGlobalVector()? > > The equation is (simplified) of the form > d/dt q1 + grad q2 = 0 > d/dt q2 + f(q1) = 0 > with an arbitrary function f depending on q1. > > Thanks a lot for your help in advance, > Rolf -------------- next part -------------- An HTML attachment was scrubbed... URL: From arthursoprano at gmail.com Mon Nov 28 05:26:19 2016 From: arthursoprano at gmail.com (Arthur Besen Soprano) Date: Mon, 28 Nov 2016 09:26:19 -0200 Subject: [petsc-users] SNES Multblock type In-Reply-To: References: <9D2ABF46-F068-4BE0-B3BE-3691CD8A7D3B@mcs.anl.gov> Message-ID: Thanks for the response. I'll take a look at the code to see if I can get it to work for fieldsplit decomposition. On Fri, Nov 25, 2016 at 11:17 PM, Barry Smith wrote: > > > On Nov 25, 2016, at 7:02 PM, Matthew Knepley wrote: > > > > On Fri, Nov 25, 2016 at 3:13 PM, Barry Smith wrote: > > > > > On Nov 25, 2016, at 2:38 PM, Arthur Besen Soprano < > arthursoprano at gmail.com> wrote: > > > > > > Hi, > > > > > > I was just recently checking some of snes sources code and found a > src\snes\impls\multiblock\multiblock.c which seemed to be a Non-linear > (SNES) equivalent of the fieldsplit for linear problems (KSP). > > > > Yes it was an attempt to be something similar. > > > > > However I was not able to use it and did not see any options available > with the "-help " argument. > > > > > > My question is: Is this module disabled? If not, how can I use it? > > > > > > (using -snes_type multiblock or -npc_snes_type multiblock does not > work...) > > > > It is not really functional at the moment. The only way for you to > use it is to dig through the code to understand it and likely "fix it", > that is change the code to do what it should do (note that it may not be > clear what it should do). It also might be simpler to write a new > SNESFIELDSPLIT that mimics PCFIELDPLIT We always welcome contributions. > > > > A reason not to base it on FieldSplit is that this serializes the > partitions, but we really want them to run in parallel, which is why > > I used ASM as a model for MultiBlock. > > This isn't clear when the code has things like > > PetscInt nfields; /* If block is defined on a DA, the number of DA > fields */ > PetscInt *fields; /* If block is defined on a DA, the list of DA > fields */ > > Perhaps multiblock was too ambitious since it seems to encompass both > subdomain and fieldsplit decompositions inside it. Perhaps they belong in > separate SNESXXX. > > From multiblock.c > > char *name; /* Block name */ > PetscInt nfields; /* If block is defined on a DA, the number of DA > fields */ > PetscInt *fields; /* If block is defined on a DA, the list of DA > fields */ > IS is; /* Index sets defining the block */ > VecScatter sctx; /* Scatter mapping global Vec to blockVec */ > SNES snes; /* Solver for this block */ > Vec x; > BlockDesc next, previous; > }; > > typedef struct { > PetscBool issetup; /* Flag is true after the all ISs and > operators have been defined */ > PetscBool defined; /* Flag is true after the blocks have > been defined, to prevent more blocks from being added */ > PetscBool defaultblocks; /* Flag is true for a system with a set > of 'k' scalar fields with the same layout (and bs = k) */ > PetscInt numBlocks; /* Number of blocks (can be fields, > domains, etc.) */ > PetscInt bs; /* Block size for IS, Vec and Mat > structures */ > PCCompositeType type; /* Solver combination method (additive, > multiplicative, etc.) */ > BlockDesc blocks; /* Linked list of block descriptors */ > I'm not sure where MultiBlock fits in > > Note there are SNESNASM and SNESASPIN which appear to be other approaches > to ASM for nonlinear problems. > > Barry > > > > > Matt > > > > > > Barry > > > > > > > > Thanks, > > > > > > Arthur > > > > > > -- > > > Arthur B. Soprano > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > > -- Norbert Wiener > > -- Arthur B. Soprano -------------- next part -------------- An HTML attachment was scrubbed... URL: From dave.mayhem23 at gmail.com Mon Nov 28 06:22:09 2016 From: dave.mayhem23 at gmail.com (Dave May) Date: Mon, 28 Nov 2016 12:22:09 +0000 Subject: [petsc-users] How to get a matrix and vector for a coupled system of equations? In-Reply-To: <9B00DE97-7300-400D-8CF4-2A5DFB146106@mpia.de> References: <97FEE433-4779-4289-A3B6-4A7772799F59@mpia.de> <9B00DE97-7300-400D-8CF4-2A5DFB146106@mpia.de> Message-ID: On 28 November 2016 at 10:43, Rolf Kuiper wrote: > Hi Dave, > > Thanks a lot for your prompt reply! This is even easier than I thought > (and that is most likely the reason, why I could not think into this > direction) :) > And yes, I might/should upgrade our PETSc version used (3.1), but it will > take me some days to check the full code package. > > Now, I will create my DA (now in 3.6 called DMDA) for the coupled system > via > DACreate3d(PETSC_COMM_WORLD, Periodicity, DA_STENCIL_BOX, Nx, Ny, Nz, Px, > Py, Pz, 4, 1, lx, ly, lz, &MyDA); > instead of > DACreate3d(PETSC_COMM_WORLD, Periodicity, DA_STENCIL_BOX, Nx, Ny, Nz, Px, > Py, Pz, 1, 1, lx, ly, lz, &MyDA); > which I have used for the single equation. > > I would like to ask one follow-up question: > Currently, I loop over my matrix (and vectors) via three for-loops over > the 3 spatial directions, and set the columns indices in the following way: > for(k){ > row.k = k; > col[0].k = k; > col[1].k = k; > col[2].k = k; > col[3].k = k; > col[4].k = k+1; > col[5].k = k-1; > for(j){ > row.j = j; > col[0].j = j; > col[1].j = j; > col[2].j = j+1; > col[3].j = j-1; > col[4].j = j; > col[5].j = j; > for(i){ > row.i = i; > col[0].i = i+1; > col[1].i = i-1; > col[2].i = i; > col[3].i = i; > col[4].i = i; > col[5].i = i; > Now for the coupled equations, I should overall additionally loop over the > number of DOFs (just 2 in my previous email example). > So presumably you are using MatSetValuesStencil() to insert entries into the matrix. http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatSetValuesStencil.html You can keep using MatSetValuesStencil(), for you multi-component example, however you will additionally need to enter a value for the member "c" within the MatStencil struct. See http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatStencil.html "c" relates to the component or DOF index. So the code above will need to be modified slightly to define values for row.c and col[0].c , col[1].c ... etc Alternatively you can use MatSetValuesStencilBlocked() http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatSetValuesBlockedStencil.html#MatSetValuesBlockedStencil > Could you give me an easy example or pseudo-code for the associated > assignment of columns (I have the same stencil in each of the submatrices, > so for the 2 DOFs in 3D, I would get 7+6=13 column entries per row)? Or can > you link me to an existing example within the PETSc help? > Note that the manual pages I've sent links to contains links to example codes (see bottom of the webpage) where you can see how to use these functions. Thanks, Dave > > Again, Thanks a lot! > Rolf > > > > > Am 24.11.2016 um 22:30 schrieb Dave May : > > When you create the DMDA, set the number of DOFs (degrees of freedom) per > point to be 2 instead of 1. > > You must be using and ancient version of petsc given the function names > you quoted. Consider upgrading to 3.7 > > Thanks, > Dave > > On Thu, 24 Nov 2016 at 20:24, Rolf Kuiper wrote: > >> Dear PETSc users, >> >> maybe this is an easy question, but I can?t find the information right >> away in the user?s guide nor online. >> >> What I am currently doing and which works fine: >> To solve a partial differential equation for the quantity q on a parallel >> distributed grid, which is represented by the Distributed Array MyDA, I am >> currently creating the associated sparse matrix for the KSP solver via >> DAGetMatrix(MyDA, MATMPIAIJ, &MyMatrix); >> >> The solution vector and right hand side vector are created via >> DACreateGlobalVector(MyDA, &MyRightHandSideVector); >> VecDuplicate(MyRightHandSideVector, &GlobalSolutionVector); >> >> The DA is constructed using DACreate3d() with the corresponding regular >> structured grid information. >> >> And here is my problem: >> Now, I would like to solve a coupled system of equations for the >> quantities q1 and q2 on the same grid. I.e., the matrix should just get the >> double number of rows and columns, the vectors contain twice the number of >> entries (e.g. first all q1s and then all q2s). And I would like to be sure >> that the entries of q1 and q2, which are associated with the same grid cell >> are located on the same processor. >> Is there already a pre-defined structures available (such as MATMPIAIJ) >> within PETSc to enlarge such a single equation to store the entries of >> coupled equations? Such as >> DACreateTwiceTheGlobalVector()? >> >> The equation is (simplified) of the form >> d/dt q1 + grad q2 = 0 >> d/dt q2 + f(q1) = 0 >> with an arbitrary function f depending on q1. >> >> Thanks a lot for your help in advance, >> Rolf >> > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Nov 28 07:25:42 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 28 Nov 2016 07:25:42 -0600 Subject: [petsc-users] How to get a matrix and vector for a coupled system of equations? In-Reply-To: <9B00DE97-7300-400D-8CF4-2A5DFB146106@mpia.de> References: <97FEE433-4779-4289-A3B6-4A7772799F59@mpia.de> <9B00DE97-7300-400D-8CF4-2A5DFB146106@mpia.de> Message-ID: On Mon, Nov 28, 2016 at 4:43 AM, Rolf Kuiper wrote: > Hi Dave, > > Thanks a lot for your prompt reply! This is even easier than I thought > (and that is most likely the reason, why I could not think into this > direction) :) > And yes, I might/should upgrade our PETSc version used (3.1), but it will > take me some days to check the full code package. > > Now, I will create my DA (now in 3.6 called DMDA) for the coupled system > via > DACreate3d(PETSC_COMM_WORLD, Periodicity, DA_STENCIL_BOX, Nx, Ny, Nz, Px, > Py, Pz, 4, 1, lx, ly, lz, &MyDA); > instead of > DACreate3d(PETSC_COMM_WORLD, Periodicity, DA_STENCIL_BOX, Nx, Ny, Nz, Px, > Py, Pz, 1, 1, lx, ly, lz, &MyDA); > which I have used for the single equation. > > I would like to ask one follow-up question: > Currently, I loop over my matrix (and vectors) via three for-loops over > the 3 spatial directions, and set the columns indices in the following way: > for(k){ > row.k = k; > col[0].k = k; > col[1].k = k; > col[2].k = k; > col[3].k = k; > col[4].k = k+1; > col[5].k = k-1; > for(j){ > row.j = j; > col[0].j = j; > col[1].j = j; > col[2].j = j+1; > col[3].j = j-1; > col[4].j = j; > col[5].j = j; > for(i){ > row.i = i; > col[0].i = i+1; > col[1].i = i-1; > col[2].i = i; > col[3].i = i; > col[4].i = i; > col[5].i = i; > Now for the coupled equations, I should overall additionally loop over the > number of DOFs (just 2 in my previous email example). Could you give me an > easy example or pseudo-code for the associated assignment of columns (I > have the same stencil in each of the submatrices, so for the 2 DOFs in 3D, > I would get 7+6=13 column entries per row)? Or can you link me to an > existing example within the PETSc help? > SNES ex19 uses multiple dofs. Thanks, Matt > Again, Thanks a lot! > Rolf > > > > > Am 24.11.2016 um 22:30 schrieb Dave May : > > When you create the DMDA, set the number of DOFs (degrees of freedom) per > point to be 2 instead of 1. > > You must be using and ancient version of petsc given the function names > you quoted. Consider upgrading to 3.7 > > Thanks, > Dave > > On Thu, 24 Nov 2016 at 20:24, Rolf Kuiper wrote: > >> Dear PETSc users, >> >> maybe this is an easy question, but I can?t find the information right >> away in the user?s guide nor online. >> >> What I am currently doing and which works fine: >> To solve a partial differential equation for the quantity q on a parallel >> distributed grid, which is represented by the Distributed Array MyDA, I am >> currently creating the associated sparse matrix for the KSP solver via >> DAGetMatrix(MyDA, MATMPIAIJ, &MyMatrix); >> >> The solution vector and right hand side vector are created via >> DACreateGlobalVector(MyDA, &MyRightHandSideVector); >> VecDuplicate(MyRightHandSideVector, &GlobalSolutionVector); >> >> The DA is constructed using DACreate3d() with the corresponding regular >> structured grid information. >> >> And here is my problem: >> Now, I would like to solve a coupled system of equations for the >> quantities q1 and q2 on the same grid. I.e., the matrix should just get the >> double number of rows and columns, the vectors contain twice the number of >> entries (e.g. first all q1s and then all q2s). And I would like to be sure >> that the entries of q1 and q2, which are associated with the same grid cell >> are located on the same processor. >> Is there already a pre-defined structures available (such as MATMPIAIJ) >> within PETSc to enlarge such a single equation to store the entries of >> coupled equations? Such as >> DACreateTwiceTheGlobalVector()? >> >> The equation is (simplified) of the form >> d/dt q1 + grad q2 = 0 >> d/dt q2 + f(q1) = 0 >> with an arbitrary function f depending on q1. >> >> Thanks a lot for your help in advance, >> Rolf >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From lingdeer at gmail.com Mon Nov 28 09:49:40 2016 From: lingdeer at gmail.com (Elaine Tang) Date: Mon, 28 Nov 2016 10:49:40 -0500 Subject: [petsc-users] Petsc with Windows Message-ID: Hi, I am developing some software on windows that would like to utilize petsc library. Currently I have petsc library configured on cygwin on my windows machine. Is there any binary of petsc for windows so that the software that I develop will be more portable and can be run on other windows machine as well? Thanks! -- Elaine Tang -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Mon Nov 28 11:36:50 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 28 Nov 2016 11:36:50 -0600 Subject: [petsc-users] PETSc for ISPH In-Reply-To: <69814e13-f0c8-f358-32ae-3ad3606a3d1a@uibk.ac.at> References: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> <95F49D17-B952-48EA-9212-301B1674DE9E@mcs.anl.gov> <69814e13-f0c8-f358-32ae-3ad3606a3d1a@uibk.ac.at> Message-ID: <1B22A9DE-27A8-49AF-BE5A-0C3E4AB61828@mcs.anl.gov> > On Nov 28, 2016, at 10:30 AM, Massoud Rezavand wrote: > > Dear Barry, > > You recommended me to directly use MatSetValues() and not to put the matrix in a parallel CSR matrix. > > In order to count the d_nz and o_nz I have to put the entries into a sequential CSR matrix If you don't know the number of nonzeros per row how are you going to put the values into a sequential CSR format? On the other hand if you can figure out the number of nonzeros per row without creating the matrix how come you cannot figure out the d_nz and o_nz? > and then do the MatMPIAIJSetPreallocation() and then do the MatSet Values(). If you do put the values into a sequential CSR format, which it is not clear to me is needed, then you can just call MatCreateMPIAIJWithArrays() and skip the "MatMPIAIJSetPreallocation() and then do the MatSet Values()" Barry > > Does it effect the performance ? > > > Regards, > > Massoud > > On 11/21/2016 08:10 PM, Barry Smith wrote: >>> On Nov 21, 2016, at 12:20 PM, Massoud Rezavand wrote: >>> >>> Thank you very much. >>> >>> Yes I am developing the new 3D version in Parallel with the PPM (the new generation OpenFPM, not released yet) library which generates the particles and decomposes the domain. >>> >>> I don't have the parallel matrix generation yet. In the old version I had CSR format and a vector of knowns (b). >>> So, should I use MatSetValuesStencil() ? >> MatSetValuesStencil is for finite differences on a structured grid. I don't think it makes sense for your application. >> >> You need to use MatMPIAIJSetPreallocation() and then MatSetValues() to put the entries in. >> >>> What do you recommend for creating the vector of knowns (b)? >> Just use VecCreateMPI() >>> On the other hand, due to the convergence issues for millions of particles in ISPH, I have to use a preconditioner. In a paper I saw they have used BoomerAMG from HYPRE. Do you have any recommendation? >> We have many to try, it is not clear that any would be particularly good for SPH. Certainly try BoomerAMG >> >>> I saw an example ( ex19.c) using BoomerAMG. Should I follow that? >>> >>> >>> PS: regarding the unbalance sparsity in SPH, yes in contrast to the mesh-based methods, the A matrix in ISPH is changing over the time but the number of non-zeros is defined by the number of neighboring particles which in most cases is constant. >>> >>> Cheers, >>> >>> Massoud >>> >>> >>> >>> On 11/21/2016 06:18 PM, Barry Smith wrote: >>>>> On Nov 21, 2016, at 10:33 AM, Massoud Rezavand >>>>> wrote: >>>>> >>>>> Dear all, >>>>> >>>>> I am going to use PETSc in an Incompressible SPH code to solve the pressure Poisson equation as a linear system of equations. >>>>> >>>>> In my old sequential code I used the PCG method or the BiCGSTAB with jacobi preconditioner. >>>>> I used to store the coefficient matrix (A) in CSR (AIJ) format and solve it. >>>>> >>>>> My question is that how should I import the CSR metrix and the known vector (b) into the library to be solved? Is there an example to show how to import and external system of eqs. into PETSc? >>>>> >>>> For sequential code it is straightforward. >>>> >>>> If you already have the matrix in CSR format you can call MatCreateSeqAIJWithArrays() to create the PETSc matrix without copying the data. You can use VecCreateSeqWithArray() to provide the vector. Or you can use VecPlaceArray() to use the array of vector values you provide. >>>> >>>> >>>>> In my case, the computational domain is decomposed by another library, so does it effect the performance of PETSc? >>>>> >>>> I read this to mean you want the new code to be parallel (but the old one is sequential)? >>>> >>>> If you don't currently have matrix generation in parallel I urge you strongly to directly use MatSetValues() to generate your matrix, do not first put the matrix entries into some kind of parallel CSR format. If you already have the matrix in "parallel" CSR format you can use MatCreateMPIAIJWithArrays() to copy the matrix over to CSR format. >>>> >>>> It is my understanding that SPH can produce matrices with very unbalance sparsity. It is important to take this into account if you wish to run in parallel since if you end up with some processes having many more nonzeros than other processes you will get very poor performance. >>>> >>>> >>>> Barry >>>> >>>> >>>> >>>>> With the best regards, >>>>> Massoud >>>>> >>>>> > From Massoud.Rezavand at uibk.ac.at Mon Nov 28 14:18:48 2016 From: Massoud.Rezavand at uibk.ac.at (Massoud Rezavand) Date: Mon, 28 Nov 2016 21:18:48 +0100 Subject: [petsc-users] PETSc for ISPH In-Reply-To: <1B22A9DE-27A8-49AF-BE5A-0C3E4AB61828@mcs.anl.gov> References: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> <95F49D17-B952-48EA-9212-301B1674DE9E@mcs.anl.gov> <69814e13-f0c8-f358-32ae-3ad3606a3d1a@uibk.ac.at> <1B22A9DE-27A8-49AF-BE5A-0C3E4AB61828@mcs.anl.gov> Message-ID: <57dd7fe6-3c3e-b548-06cb-cfc6bd882ad6@uibk.ac.at> Hi, Thanks. As you know, in SPH method, the calculations are done over the neighboring particles (j) that fall inside a support domain defined by a circle over the particle of interest (i). Since the Lagrangian nature the method, the number of neighboring particles are varying slightly over time, e.g. in a 2D domain this number is varying between 43 to 51 (in my experience). The number of nonzeros per row (A_ij) is equal to the number of neighboring particles and normally is not fixed over time, therefore, we put the elements dynamically at each time step and we have to calculate d_nz and o_nz at each time iteration. In order to preallocate the matrix, another way would be to calculate the number of neighboring particles and set that as the number of nonzeros per row. Doing so, do you recommend to use : MatMPIAIJSetPreallocation() to preallocate A to achieve the best performance? Regards, Massoud On 11/28/2016 06:36 PM, Barry Smith wrote: >> On Nov 28, 2016, at 10:30 AM, Massoud Rezavand wrote: >> >> Dear Barry, >> >> You recommended me to directly use MatSetValues() and not to put the matrix in a parallel CSR matrix. >> >> In order to count the d_nz and o_nz I have to put the entries into a sequential CSR matrix > If you don't know the number of nonzeros per row how are you going to put the values into a sequential CSR format? > On the other hand if you can figure out the number of nonzeros per row without creating the matrix how come you cannot figure out the d_nz and o_nz? > > >> and then do the MatMPIAIJSetPreallocation() and then do the MatSet Values(). > If you do put the values into a sequential CSR format, which it is not clear to me is needed, then you can just call > MatCreateMPIAIJWithArrays() and skip the "MatMPIAIJSetPreallocation() and then do the MatSet Values()" > > Barry > > > >> Does it effect the performance ? >> >> >> Regards, >> >> Massoud >> >> On 11/21/2016 08:10 PM, Barry Smith wrote: >>>> On Nov 21, 2016, at 12:20 PM, Massoud Rezavand wrote: >>>> >>>> Thank you very much. >>>> >>>> Yes I am developing the new 3D version in Parallel with the PPM (the new generation OpenFPM, not released yet) library which generates the particles and decomposes the domain. >>>> >>>> I don't have the parallel matrix generation yet. In the old version I had CSR format and a vector of knowns (b). >>>> So, should I use MatSetValuesStencil() ? >>> MatSetValuesStencil is for finite differences on a structured grid. I don't think it makes sense for your application. >>> >>> You need to use MatMPIAIJSetPreallocation() and then MatSetValues() to put the entries in. >>> >>>> What do you recommend for creating the vector of knowns (b)? >>> Just use VecCreateMPI() >>>> On the other hand, due to the convergence issues for millions of particles in ISPH, I have to use a preconditioner. In a paper I saw they have used BoomerAMG from HYPRE. Do you have any recommendation? >>> We have many to try, it is not clear that any would be particularly good for SPH. Certainly try BoomerAMG >>> >>>> I saw an example ( ex19.c) using BoomerAMG. Should I follow that? >>>> >>>> >>>> PS: regarding the unbalance sparsity in SPH, yes in contrast to the mesh-based methods, the A matrix in ISPH is changing over the time but the number of non-zeros is defined by the number of neighboring particles which in most cases is constant. >>>> >>>> Cheers, >>>> >>>> Massoud >>>> >>>> >>>> >>>> On 11/21/2016 06:18 PM, Barry Smith wrote: >>>>>> On Nov 21, 2016, at 10:33 AM, Massoud Rezavand >>>>>> wrote: >>>>>> >>>>>> Dear all, >>>>>> >>>>>> I am going to use PETSc in an Incompressible SPH code to solve the pressure Poisson equation as a linear system of equations. >>>>>> >>>>>> In my old sequential code I used the PCG method or the BiCGSTAB with jacobi preconditioner. >>>>>> I used to store the coefficient matrix (A) in CSR (AIJ) format and solve it. >>>>>> >>>>>> My question is that how should I import the CSR metrix and the known vector (b) into the library to be solved? Is there an example to show how to import and external system of eqs. into PETSc? >>>>>> >>>>> For sequential code it is straightforward. >>>>> >>>>> If you already have the matrix in CSR format you can call MatCreateSeqAIJWithArrays() to create the PETSc matrix without copying the data. You can use VecCreateSeqWithArray() to provide the vector. Or you can use VecPlaceArray() to use the array of vector values you provide. >>>>> >>>>> >>>>>> In my case, the computational domain is decomposed by another library, so does it effect the performance of PETSc? >>>>>> >>>>> I read this to mean you want the new code to be parallel (but the old one is sequential)? >>>>> >>>>> If you don't currently have matrix generation in parallel I urge you strongly to directly use MatSetValues() to generate your matrix, do not first put the matrix entries into some kind of parallel CSR format. If you already have the matrix in "parallel" CSR format you can use MatCreateMPIAIJWithArrays() to copy the matrix over to CSR format. >>>>> >>>>> It is my understanding that SPH can produce matrices with very unbalance sparsity. It is important to take this into account if you wish to run in parallel since if you end up with some processes having many more nonzeros than other processes you will get very poor performance. >>>>> >>>>> >>>>> Barry >>>>> >>>>> >>>>> >>>>>> With the best regards, >>>>>> Massoud >>>>>> >>>>>> From bsmith at mcs.anl.gov Mon Nov 28 14:24:50 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Mon, 28 Nov 2016 14:24:50 -0600 Subject: [petsc-users] PETSc for ISPH In-Reply-To: <57dd7fe6-3c3e-b548-06cb-cfc6bd882ad6@uibk.ac.at> References: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> <95F49D17-B952-48EA-9212-301B1674DE9E@mcs.anl.gov> <69814e13-f0c8-f358-32ae-3ad3606a3d1a@uibk.ac.at> <1B22A9DE-27A8-49AF-BE5A-0C3E4AB61828@mcs.anl.gov> <57dd7fe6-3c3e-b548-06cb-cfc6bd882ad6@uibk.ac.at> Message-ID: In order to get good performance you need to compute d_nz and o_nz and call MatMPIAIJSetPreallocation(). Barry > On Nov 28, 2016, at 2:18 PM, Massoud Rezavand wrote: > > Hi, > > Thanks. > > As you know, in SPH method, the calculations are done over the neighboring particles (j) that fall inside a support domain defined by a circle over the particle of interest (i). Since the Lagrangian nature the method, the number of neighboring particles are varying slightly over time, e.g. in a 2D domain this number is varying between 43 to 51 (in my experience). > > The number of nonzeros per row (A_ij) is equal to the number of neighboring particles and normally is not fixed over time, therefore, we put the elements dynamically at each time step and we have to calculate d_nz and o_nz at each time iteration. > > In order to preallocate the matrix, another way would be to calculate the number of neighboring particles and set that as the number of nonzeros per row. Doing so, do you recommend to use : > > MatMPIAIJSetPreallocation() > > to preallocate A to achieve the best performance? > > > Regards, > > Massoud > > > On 11/28/2016 06:36 PM, Barry Smith wrote: >>> On Nov 28, 2016, at 10:30 AM, Massoud Rezavand wrote: >>> >>> Dear Barry, >>> >>> You recommended me to directly use MatSetValues() and not to put the matrix in a parallel CSR matrix. >>> >>> In order to count the d_nz and o_nz I have to put the entries into a sequential CSR matrix >> If you don't know the number of nonzeros per row how are you going to put the values into a sequential CSR format? >> On the other hand if you can figure out the number of nonzeros per row without creating the matrix how come you cannot figure out the d_nz and o_nz? >> >> >>> and then do the MatMPIAIJSetPreallocation() and then do the MatSet Values(). >> If you do put the values into a sequential CSR format, which it is not clear to me is needed, then you can just call >> MatCreateMPIAIJWithArrays() and skip the "MatMPIAIJSetPreallocation() and then do the MatSet Values()" >> >> Barry >> >> >> >>> Does it effect the performance ? >>> >>> >>> Regards, >>> >>> Massoud >>> >>> On 11/21/2016 08:10 PM, Barry Smith wrote: >>>>> On Nov 21, 2016, at 12:20 PM, Massoud Rezavand wrote: >>>>> >>>>> Thank you very much. >>>>> >>>>> Yes I am developing the new 3D version in Parallel with the PPM (the new generation OpenFPM, not released yet) library which generates the particles and decomposes the domain. >>>>> >>>>> I don't have the parallel matrix generation yet. In the old version I had CSR format and a vector of knowns (b). >>>>> So, should I use MatSetValuesStencil() ? >>>> MatSetValuesStencil is for finite differences on a structured grid. I don't think it makes sense for your application. >>>> >>>> You need to use MatMPIAIJSetPreallocation() and then MatSetValues() to put the entries in. >>>> >>>>> What do you recommend for creating the vector of knowns (b)? >>>> Just use VecCreateMPI() >>>>> On the other hand, due to the convergence issues for millions of particles in ISPH, I have to use a preconditioner. In a paper I saw they have used BoomerAMG from HYPRE. Do you have any recommendation? >>>> We have many to try, it is not clear that any would be particularly good for SPH. Certainly try BoomerAMG >>>> >>>>> I saw an example ( ex19.c) using BoomerAMG. Should I follow that? >>>>> >>>>> >>>>> PS: regarding the unbalance sparsity in SPH, yes in contrast to the mesh-based methods, the A matrix in ISPH is changing over the time but the number of non-zeros is defined by the number of neighboring particles which in most cases is constant. >>>>> >>>>> Cheers, >>>>> >>>>> Massoud >>>>> >>>>> >>>>> >>>>> On 11/21/2016 06:18 PM, Barry Smith wrote: >>>>>>> On Nov 21, 2016, at 10:33 AM, Massoud Rezavand >>>>>>> wrote: >>>>>>> >>>>>>> Dear all, >>>>>>> >>>>>>> I am going to use PETSc in an Incompressible SPH code to solve the pressure Poisson equation as a linear system of equations. >>>>>>> >>>>>>> In my old sequential code I used the PCG method or the BiCGSTAB with jacobi preconditioner. >>>>>>> I used to store the coefficient matrix (A) in CSR (AIJ) format and solve it. >>>>>>> >>>>>>> My question is that how should I import the CSR metrix and the known vector (b) into the library to be solved? Is there an example to show how to import and external system of eqs. into PETSc? >>>>>>> >>>>>> For sequential code it is straightforward. >>>>>> >>>>>> If you already have the matrix in CSR format you can call MatCreateSeqAIJWithArrays() to create the PETSc matrix without copying the data. You can use VecCreateSeqWithArray() to provide the vector. Or you can use VecPlaceArray() to use the array of vector values you provide. >>>>>> >>>>>> >>>>>>> In my case, the computational domain is decomposed by another library, so does it effect the performance of PETSc? >>>>>>> >>>>>> I read this to mean you want the new code to be parallel (but the old one is sequential)? >>>>>> >>>>>> If you don't currently have matrix generation in parallel I urge you strongly to directly use MatSetValues() to generate your matrix, do not first put the matrix entries into some kind of parallel CSR format. If you already have the matrix in "parallel" CSR format you can use MatCreateMPIAIJWithArrays() to copy the matrix over to CSR format. >>>>>> >>>>>> It is my understanding that SPH can produce matrices with very unbalance sparsity. It is important to take this into account if you wish to run in parallel since if you end up with some processes having many more nonzeros than other processes you will get very poor performance. >>>>>> >>>>>> >>>>>> Barry >>>>>> >>>>>> >>>>>> >>>>>>> With the best regards, >>>>>>> Massoud >>>>>>> >>>>>>> > From dave.mayhem23 at gmail.com Mon Nov 28 14:36:04 2016 From: dave.mayhem23 at gmail.com (Dave May) Date: Mon, 28 Nov 2016 20:36:04 +0000 Subject: [petsc-users] PETSc for ISPH In-Reply-To: <57dd7fe6-3c3e-b548-06cb-cfc6bd882ad6@uibk.ac.at> References: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> <95F49D17-B952-48EA-9212-301B1674DE9E@mcs.anl.gov> <69814e13-f0c8-f358-32ae-3ad3606a3d1a@uibk.ac.at> <1B22A9DE-27A8-49AF-BE5A-0C3E4AB61828@mcs.anl.gov> <57dd7fe6-3c3e-b548-06cb-cfc6bd882ad6@uibk.ac.at> Message-ID: Massoud, On 28 November 2016 at 20:18, Massoud Rezavand wrote: > Hi, > > Thanks. > > As you know, in SPH method, the calculations are done over the neighboring > particles (j) that fall inside a support domain defined by a circle over > the particle of interest (i). Since the Lagrangian nature the method, the > number of neighboring particles are varying slightly over time, e.g. in a > 2D domain this number is varying between 43 to 51 (in my experience). > > The number of nonzeros per row (A_ij) is equal to the number of > neighboring particles and normally is not fixed over time, therefore, we > put the elements dynamically at each time step and we have to calculate > d_nz and o_nz at each time iteration. > > In order to preallocate the matrix, another way would be to calculate the > number of neighboring particles and set that as the number of nonzeros per > row. Doing so, do you recommend to use : > > MatMPIAIJSetPreallocation() > > to preallocate A to achieve the best performance? > The other thing to bear in mind is that PETSc objects like Mat and Vec are not really dynamic with respect to the partitioning. In you SPH simulation, at each time step not only does the number of non-zeros (e.g. nearest neighbours) change, but likely so to will the number of particles per sub-domain (depending on how you define a sub-domain - see footnote below). Once you create a Mat and Vec object, the partition is defined once and for all and cannot be altered. Hence, when you particles cross sub-domain boundaries, you will have to destroy the matrix and re-create the non-zero structure and re-do the preallocation. The good news is the setup time for a new mat and vec in petsc is fast so I doubt you'll notice much overhead of the create/destroy being performed at each time step. Thanks, Dave (*) My comment kind of assumes that since you are modelling incompressible fluids, you have a constant smoothing length and will partition the domain via boxes of size 2h and a sub-domain wrt to the particles will be defined via all the points live in a set of boxes mapped to a given MPI-rank. PPM probably has some clever load balancing strategy, but nevertheless I think you'll run into this issue with Mat and Vec. > > > Regards, > > Massoud > > > > On 11/28/2016 06:36 PM, Barry Smith wrote: > >> On Nov 28, 2016, at 10:30 AM, Massoud Rezavand < >>> Massoud.Rezavand at uibk.ac.at> wrote: >>> >>> Dear Barry, >>> >>> You recommended me to directly use MatSetValues() and not to put the >>> matrix in a parallel CSR matrix. >>> >>> In order to count the d_nz and o_nz I have to put the entries into a >>> sequential CSR matrix >>> >> If you don't know the number of nonzeros per row how are you going to >> put the values into a sequential CSR format? >> On the other hand if you can figure out the number of nonzeros per row >> without creating the matrix how come you cannot figure out the d_nz and >> o_nz? >> >> >> and then do the MatMPIAIJSetPreallocation() and then do the MatSet >>> Values(). >>> >> If you do put the values into a sequential CSR format, which it is >> not clear to me is needed, then you can just call >> MatCreateMPIAIJWithArrays() and skip the "MatMPIAIJSetPreallocation() and >> then do the MatSet Values()" >> >> Barry >> >> >> >> Does it effect the performance ? >>> >>> >>> Regards, >>> >>> Massoud >>> >>> On 11/21/2016 08:10 PM, Barry Smith wrote: >>> >>>> On Nov 21, 2016, at 12:20 PM, Massoud Rezavand < >>>>> Massoud.Rezavand at uibk.ac.at> wrote: >>>>> >>>>> Thank you very much. >>>>> >>>>> Yes I am developing the new 3D version in Parallel with the PPM (the >>>>> new generation OpenFPM, not released yet) library which generates the >>>>> particles and decomposes the domain. >>>>> >>>>> I don't have the parallel matrix generation yet. In the old version I >>>>> had CSR format and a vector of knowns (b). >>>>> So, should I use MatSetValuesStencil() ? >>>>> >>>> MatSetValuesStencil is for finite differences on a structured >>>> grid. I don't think it makes sense for your application. >>>> >>>> You need to use MatMPIAIJSetPreallocation() and then >>>> MatSetValues() to put the entries in. >>>> >>>> What do you recommend for creating the vector of knowns (b)? >>>>> >>>> Just use VecCreateMPI() >>>> >>>>> On the other hand, due to the convergence issues for millions of >>>>> particles in ISPH, I have to use a preconditioner. In a paper I saw they >>>>> have used BoomerAMG from HYPRE. Do you have any recommendation? >>>>> >>>> We have many to try, it is not clear that any would be particularly >>>> good for SPH. Certainly try BoomerAMG >>>> >>>> I saw an example ( ex19.c) using BoomerAMG. Should I follow that? >>>>> >>>>> >>>>> PS: regarding the unbalance sparsity in SPH, yes in contrast to the >>>>> mesh-based methods, the A matrix in ISPH is changing over the time but the >>>>> number of non-zeros is defined by the number of neighboring particles which >>>>> in most cases is constant. >>>>> >>>>> Cheers, >>>>> >>>>> Massoud >>>>> >>>>> >>>>> >>>>> On 11/21/2016 06:18 PM, Barry Smith wrote: >>>>> >>>>>> On Nov 21, 2016, at 10:33 AM, Massoud Rezavand < >>>>>>> Massoud.Rezavand at uibk.ac.at> >>>>>>> wrote: >>>>>>> >>>>>>> Dear all, >>>>>>> >>>>>>> I am going to use PETSc in an Incompressible SPH code to solve the >>>>>>> pressure Poisson equation as a linear system of equations. >>>>>>> >>>>>>> In my old sequential code I used the PCG method or the BiCGSTAB with >>>>>>> jacobi preconditioner. >>>>>>> I used to store the coefficient matrix (A) in CSR (AIJ) format and >>>>>>> solve it. >>>>>>> >>>>>>> My question is that how should I import the CSR metrix and the known >>>>>>> vector (b) into the library to be solved? Is there an example to show how >>>>>>> to import and external system of eqs. into PETSc? >>>>>>> >>>>>>> For sequential code it is straightforward. >>>>>> >>>>>> If you already have the matrix in CSR format you can call >>>>>> MatCreateSeqAIJWithArrays() to create the PETSc matrix without copying the >>>>>> data. You can use VecCreateSeqWithArray() to provide the vector. Or you can >>>>>> use VecPlaceArray() to use the array of vector values you provide. >>>>>> >>>>>> >>>>>> In my case, the computational domain is decomposed by another >>>>>>> library, so does it effect the performance of PETSc? >>>>>>> >>>>>>> I read this to mean you want the new code to be parallel (but >>>>>> the old one is sequential)? >>>>>> >>>>>> If you don't currently have matrix generation in parallel I urge >>>>>> you strongly to directly use MatSetValues() to generate your matrix, do not >>>>>> first put the matrix entries into some kind of parallel CSR format. If you >>>>>> already have the matrix in "parallel" CSR format you can use >>>>>> MatCreateMPIAIJWithArrays() to copy the matrix over to CSR format. >>>>>> >>>>>> It is my understanding that SPH can produce matrices with very >>>>>> unbalance sparsity. It is important to take this into account if you wish >>>>>> to run in parallel since if you end up with some processes having many more >>>>>> nonzeros than other processes you will get very poor performance. >>>>>> >>>>>> >>>>>> Barry >>>>>> >>>>>> >>>>>> >>>>>> With the best regards, >>>>>>> Massoud >>>>>>> >>>>>>> >>>>>>> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Mon Nov 28 15:11:04 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 28 Nov 2016 15:11:04 -0600 Subject: [petsc-users] PETSc for ISPH In-Reply-To: <57dd7fe6-3c3e-b548-06cb-cfc6bd882ad6@uibk.ac.at> References: <12c09cd7-0c84-7d9f-0d43-cfa2ec1825f4@uibk.ac.at> <95F49D17-B952-48EA-9212-301B1674DE9E@mcs.anl.gov> <69814e13-f0c8-f358-32ae-3ad3606a3d1a@uibk.ac.at> <1B22A9DE-27A8-49AF-BE5A-0C3E4AB61828@mcs.anl.gov> <57dd7fe6-3c3e-b548-06cb-cfc6bd882ad6@uibk.ac.at> Message-ID: On Mon, Nov 28, 2016 at 2:18 PM, Massoud Rezavand < Massoud.Rezavand at uibk.ac.at> wrote: > Hi, > > Thanks. > > As you know, in SPH method, the calculations are done over the neighboring > particles (j) that fall inside a support domain defined by a circle over > the particle of interest (i). Since the Lagrangian nature the method, the > number of neighboring particles are varying slightly over time, e.g. in a > 2D domain this number is varying between 43 to 51 (in my experience). > > The number of nonzeros per row (A_ij) is equal to the number of > neighboring particles and normally is not fixed over time, therefore, we > put the elements dynamically at each time step and we have to calculate > d_nz and o_nz at each time iteration. > > In order to preallocate the matrix, another way would be to calculate the > number of neighboring particles and set that as the number of nonzeros per > row. Doing so, do you recommend to use : > > MatMPIAIJSetPreallocation() > > to preallocate A to achieve the best performance? > First, you should just do it in two passes. First count the nonzeros, preallocate the matrix, then put in the values. I have never seen this get even close to 1% of the total runtime with an implicit method. However, if you measure it and its significant, then I would switch to a MatShell where you just calculate the action of the operator. Matt > > Regards, > > Massoud > > > On 11/28/2016 06:36 PM, Barry Smith wrote: > >> On Nov 28, 2016, at 10:30 AM, Massoud Rezavand < >>> Massoud.Rezavand at uibk.ac.at> wrote: >>> >>> Dear Barry, >>> >>> You recommended me to directly use MatSetValues() and not to put the >>> matrix in a parallel CSR matrix. >>> >>> In order to count the d_nz and o_nz I have to put the entries into a >>> sequential CSR matrix >>> >> If you don't know the number of nonzeros per row how are you going to >> put the values into a sequential CSR format? >> On the other hand if you can figure out the number of nonzeros per row >> without creating the matrix how come you cannot figure out the d_nz and >> o_nz? >> >> >> and then do the MatMPIAIJSetPreallocation() and then do the MatSet >>> Values(). >>> >> If you do put the values into a sequential CSR format, which it is >> not clear to me is needed, then you can just call >> MatCreateMPIAIJWithArrays() and skip the "MatMPIAIJSetPreallocation() and >> then do the MatSet Values()" >> >> Barry >> >> >> >> Does it effect the performance ? >>> >>> >>> Regards, >>> >>> Massoud >>> >>> On 11/21/2016 08:10 PM, Barry Smith wrote: >>> >>>> On Nov 21, 2016, at 12:20 PM, Massoud Rezavand < >>>>> Massoud.Rezavand at uibk.ac.at> wrote: >>>>> >>>>> Thank you very much. >>>>> >>>>> Yes I am developing the new 3D version in Parallel with the PPM (the >>>>> new generation OpenFPM, not released yet) library which generates the >>>>> particles and decomposes the domain. >>>>> >>>>> I don't have the parallel matrix generation yet. In the old version I >>>>> had CSR format and a vector of knowns (b). >>>>> So, should I use MatSetValuesStencil() ? >>>>> >>>> MatSetValuesStencil is for finite differences on a structured >>>> grid. I don't think it makes sense for your application. >>>> >>>> You need to use MatMPIAIJSetPreallocation() and then >>>> MatSetValues() to put the entries in. >>>> >>>> What do you recommend for creating the vector of knowns (b)? >>>>> >>>> Just use VecCreateMPI() >>>> >>>>> On the other hand, due to the convergence issues for millions of >>>>> particles in ISPH, I have to use a preconditioner. In a paper I saw they >>>>> have used BoomerAMG from HYPRE. Do you have any recommendation? >>>>> >>>> We have many to try, it is not clear that any would be particularly >>>> good for SPH. Certainly try BoomerAMG >>>> >>>> I saw an example ( ex19.c) using BoomerAMG. Should I follow that? >>>>> >>>>> >>>>> PS: regarding the unbalance sparsity in SPH, yes in contrast to the >>>>> mesh-based methods, the A matrix in ISPH is changing over the time but the >>>>> number of non-zeros is defined by the number of neighboring particles which >>>>> in most cases is constant. >>>>> >>>>> Cheers, >>>>> >>>>> Massoud >>>>> >>>>> >>>>> >>>>> On 11/21/2016 06:18 PM, Barry Smith wrote: >>>>> >>>>>> On Nov 21, 2016, at 10:33 AM, Massoud Rezavand < >>>>>>> Massoud.Rezavand at uibk.ac.at> >>>>>>> wrote: >>>>>>> >>>>>>> Dear all, >>>>>>> >>>>>>> I am going to use PETSc in an Incompressible SPH code to solve the >>>>>>> pressure Poisson equation as a linear system of equations. >>>>>>> >>>>>>> In my old sequential code I used the PCG method or the BiCGSTAB with >>>>>>> jacobi preconditioner. >>>>>>> I used to store the coefficient matrix (A) in CSR (AIJ) format and >>>>>>> solve it. >>>>>>> >>>>>>> My question is that how should I import the CSR metrix and the known >>>>>>> vector (b) into the library to be solved? Is there an example to show how >>>>>>> to import and external system of eqs. into PETSc? >>>>>>> >>>>>>> For sequential code it is straightforward. >>>>>> >>>>>> If you already have the matrix in CSR format you can call >>>>>> MatCreateSeqAIJWithArrays() to create the PETSc matrix without copying the >>>>>> data. You can use VecCreateSeqWithArray() to provide the vector. Or you can >>>>>> use VecPlaceArray() to use the array of vector values you provide. >>>>>> >>>>>> >>>>>> In my case, the computational domain is decomposed by another >>>>>>> library, so does it effect the performance of PETSc? >>>>>>> >>>>>>> I read this to mean you want the new code to be parallel (but >>>>>> the old one is sequential)? >>>>>> >>>>>> If you don't currently have matrix generation in parallel I urge >>>>>> you strongly to directly use MatSetValues() to generate your matrix, do not >>>>>> first put the matrix entries into some kind of parallel CSR format. If you >>>>>> already have the matrix in "parallel" CSR format you can use >>>>>> MatCreateMPIAIJWithArrays() to copy the matrix over to CSR format. >>>>>> >>>>>> It is my understanding that SPH can produce matrices with very >>>>>> unbalance sparsity. It is important to take this into account if you wish >>>>>> to run in parallel since if you end up with some processes having many more >>>>>> nonzeros than other processes you will get very poor performance. >>>>>> >>>>>> >>>>>> Barry >>>>>> >>>>>> >>>>>> >>>>>> With the best regards, >>>>>>> Massoud >>>>>>> >>>>>>> >>>>>>> > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jason.lefley at aclectic.com Mon Nov 28 17:30:02 2016 From: jason.lefley at aclectic.com (Jason Lefley) Date: Mon, 28 Nov 2016 15:30:02 -0800 Subject: [petsc-users] Multiple distributed arrays having equivalent partitioning but different stencil widths Message-ID: I?m developing an application and used PETSc?s DMDA functionality to perform distributed computation on a cartesian grid. I encountered a situation where I need two distributed arrays with equivalent partitioning but each having a different stencil width. Right now I accomplish this through multiple calls to DMDACreate3d(), however I found that for some combinations of global array dimensions and number of processors, the multiple calls to DMDACreate3d() result in partition sizes that differ by a single cell when comparing the partitioning of the two distributed arrays. The application cannot run if this happens because a particular process needs access to the same grid locations in both of the distributed arrays. Is it possible to use PETSc?s cartesian grid partitioning functionality to perform a single partitioning of the domain and then set up the two distributed arrays using that partitioning in combination with different stencil widths? I looked at the source code that performs the partitioning but did not see an obvious way to use it in the capacity I describe. I think I could use lower level calls in PETSc and some other partitioning algorithm if necessary but I want to make sure that there is no way to do this using the built-in partitioning functionality. Thanks From popov at uni-mainz.de Mon Nov 28 17:36:42 2016 From: popov at uni-mainz.de (Anton) Date: Tue, 29 Nov 2016 00:36:42 +0100 Subject: [petsc-users] Multiple distributed arrays having equivalent partitioning but different stencil widths In-Reply-To: References: Message-ID: <64468eaa-5d25-cdb3-ef80-8a6356b9e846@uni-mainz.de> Jason, I guess you can let PETSc partition the first DMDA, then access the partitioning data using DMDAGetOwnershipRanges, and pass this to subsequent calls to DMDACreat3D via lx, ly, lz parameters. Thanks, Anton On 11/29/16 12:30 AM, Jason Lefley wrote: > I?m developing an application and used PETSc?s DMDA functionality to perform distributed computation on a cartesian grid. I encountered a situation where I need two distributed arrays with equivalent partitioning but each having a different stencil width. > > Right now I accomplish this through multiple calls to DMDACreate3d(), however I found that for some combinations of global array dimensions and number of processors, the multiple calls to DMDACreate3d() result in partition sizes that differ by a single cell when comparing the partitioning of the two distributed arrays. The application cannot run if this happens because a particular process needs access to the same grid locations in both of the distributed arrays. > > Is it possible to use PETSc?s cartesian grid partitioning functionality to perform a single partitioning of the domain and then set up the two distributed arrays using that partitioning in combination with different stencil widths? I looked at the source code that performs the partitioning but did not see an obvious way to use it in the capacity I describe. I think I could use lower level calls in PETSc and some other partitioning algorithm if necessary but I want to make sure that there is no way to do this using the built-in partitioning functionality. > > Thanks From knepley at gmail.com Mon Nov 28 17:36:54 2016 From: knepley at gmail.com (Matthew Knepley) Date: Mon, 28 Nov 2016 17:36:54 -0600 Subject: [petsc-users] Multiple distributed arrays having equivalent partitioning but different stencil widths In-Reply-To: References: Message-ID: On Mon, Nov 28, 2016 at 5:30 PM, Jason Lefley wrote: > I?m developing an application and used PETSc?s DMDA functionality to > perform distributed computation on a cartesian grid. I encountered a > situation where I need two distributed arrays with equivalent partitioning > but each having a different stencil width. > > Right now I accomplish this through multiple calls to DMDACreate3d(), > however I found that for some combinations of global array dimensions and > number of processors, the multiple calls to DMDACreate3d() result in > partition sizes that differ by a single cell when comparing the > partitioning of the two distributed arrays. The application cannot run if > this happens because a particular process needs access to the same grid > locations in both of the distributed arrays. > > Is it possible to use PETSc?s cartesian grid partitioning functionality to > perform a single partitioning of the domain and then set up the two > distributed arrays using that partitioning in combination with different > stencil widths? I looked at the source code that performs the partitioning > but did not see an obvious way to use it in the capacity I describe. I > think I could use lower level calls in PETSc and some other partitioning > algorithm if necessary but I want to make sure that there is no way to do > this using the built-in partitioning functionality. > Yes, you just use the lm,ln,lp arguments to prescribe the partitioning. Here is an example doing that https://bitbucket.org/petsc/petsc/src/db95f2d7f2b6de90a713b83cb05f32153c473dd3/src/snes/examples/tutorials/ex28.c?at=master&fileviewer=file-view-default#ex28.c-357 albeit in a slightly tricky way since the second DMDA is at staggered points. Thanks, Matt > Thanks -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jychang48 at gmail.com Mon Nov 28 20:02:58 2016 From: jychang48 at gmail.com (Justin Chang) Date: Mon, 28 Nov 2016 20:02:58 -0600 Subject: [petsc-users] pcfieldsplitting not working for VI Message-ID: Hi all, We are working on enforcing maximum principles for the Darcy equation using the variational inequality (with Firedrake). We are employing the VMS finite element formulation for the Darcy equation which results in a saddle-point system, so we are using the schur complement approach to solve the saddle-point system. These are the petsc4py options that we've set: petsc_options = PETSc.Options() petsc_options.prefixPush("rs_") petsc_options.setValue("ksp_type", "gmres") petsc_options.setValue("pc_type", "fieldsplit") petsc_options.setValue("pc_fieldsplit_type", "schur") petsc_options.setValue("pc_fieldsplit_schur_fact_type","full") petsc_options.setValue("pc_fieldsplit_schur_precondition", "selfp") petsc_options.setValue("fieldsplit_0_ksp_type", "preonly") petsc_options.setValue("fieldsplit_0_pc_type", "bjacobi") petsc_options.setValue("fieldsplit_1_ksp_type", "preonly") petsc_options.setValue("fieldsplit_1_pc_type", "hypre") petsc_options.setValue("fieldsplit_1_pc_hypre_type", "boomeramg") petsc_options.setValue("fieldsplit_1_pc_hypre_boomeramg_strong_threshold", 0.75) petsc_options.setValue("fieldsplit_1_pc_hypre_boomeramg_agg_nl", 2) petsc_options.prefixPop() Attached is the full Firedrake project file (as well as the corresponding GMSH file in case any Firedrakers out there want to reproduce this) so that you guys have a basic understanding of what we're trying to do. If we do not apply any bounds and do a regular Newton method (with "-snes_type ksponly"), our boundary value problem works. However, if we apply VINEWTONRSLS we get the following error: $ python sphere.py -rs_snes_monitor -rs_ksp_monitor 0 SNES Function norm 3.862953179603e-01 Traceback (most recent call last): File "sphere.py", line 179, in virs() File "sphere.py", line 162, in virs rs_solver.solve(None,sol_vec) File "PETSc/SNES.pyx", line 537, in petsc4py.PETSc.SNES.solve (src/petsc4py.PETSc.c:169159) petsc4py.PETSc.Error: error code 77 [0] SNESSolve() line 4061 in /tmp/pip-plvgeV-build/src/snes/interface/snes.c [0] SNESSolve_VINEWTONRSLS() line 506 in /tmp/pip-plvgeV-build/src/snes/impls/vi/rs/virs.c [0] KSPSetUp() line 393 in /tmp/pip-plvgeV-build/src/ksp/ksp/interface/itfunc.c [0] PCSetUp() line 968 in /tmp/pip-plvgeV-build/src/ksp/pc/interface/precon.c [0] PCSetUp_FieldSplit() line 487 in /tmp/pip-plvgeV-build/src/ksp/pc/impls/fieldsplit/fieldsplit.c [0] PCFieldSplitSetDefaults() line 470 in /tmp/pip-plvgeV-build/src/ksp/pc/impls/fieldsplit/fieldsplit.c [0] Petsc has generated inconsistent data [0] Unhandled case, must have at least two fields, not 1 Why is this happening? It seems to me VINEWTONRSLS is not understanding that I have a two-field formulation. Thanks, Justin -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: sphere.py Type: text/x-python Size: 5644 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: try.msh Type: model/mesh Size: 632781 bytes Desc: not available URL: From clarkp at utexas.edu Tue Nov 29 00:57:26 2016 From: clarkp at utexas.edu (Clark C Pederson) Date: Tue, 29 Nov 2016 00:57:26 -0600 Subject: [petsc-users] How do I Ensure that Two DMDA Objects Are Coupled Correctly? Message-ID: Dear all, I'm writing a simple solver for the time-dependent incompressible Navier-Stokes equations, using a structured grid and a fractional step approach. Specifically, I'm following the approach of Kim and Moin, from their 1985 paper. To those who are unfamiliar with fractional step methods, you separate out the equation solving process into multiple steps. In the first step, you advance your velocity fields in time to obtain an "uncorrected" velocity. In the second step, you compute a pressure-like term using the uncorrected velocities. In the third step, you compute the correct velocities using the pressure-like term. This lead me to my question: There's two types of data I need to work with in different ways. The first is the velocity field (u,v,w), which needs to be updated using time-stepping routines. The second is the pressure-like term, which is solved for in a Poisson equation. What is the best way to couple these two fields, using distributed arrays? The suggestion here: ( http://lists.mcs.anl.gov/pipermail/petsc-users/2013-October/019022.html) is to use two DMDAs, one for the velocities with 3 DoF and one for the pressures with 1 DoF. This seems like the simplest way to work with the problem, aside from one problem: when the two arrays need to interface, how do I ensure that the local processes align? In other words, how do I make sure that my local array p[k][j][i] can pull the correct information from the local vel[k][j][i].u etc. array locations? The points would be identical or neighboring points on the structured grid, but they would be part of two different DMDA objects. How do I make sure that each processor has the data it needs? I've looked in the manual, examples, and the mailing list, but I couldn't find anything that answered this question. The answer may be very simple, so any help is appreciated. Thanks, Clark Pederson -------------- next part -------------- An HTML attachment was scrubbed... URL: From lawrence.mitchell at imperial.ac.uk Tue Nov 29 01:12:41 2016 From: lawrence.mitchell at imperial.ac.uk (Lawrence Mitchell) Date: Tue, 29 Nov 2016 07:12:41 +0000 Subject: [petsc-users] pcfieldsplitting not working for VI In-Reply-To: References: Message-ID: <9D819EDC-C5D5-43C1-8344-0AF9741B9833@imperial.ac.uk> > On 29 Nov 2016, at 02:02, Justin Chang wrote: > > Why is this happening? It seems to me VINEWTONRSLS is not understanding that I have a two-field formulation. For the built in solvers, we set up a dmshell on the snes that knows how to do field splitting. Because you set your snes up by hand, it isn't available. You'll need to call snes.setDM. The mixed finctionspace provides the correct dm via a ._dm property I think. Lawrence From jychang48 at gmail.com Tue Nov 29 01:24:58 2016 From: jychang48 at gmail.com (Justin Chang) Date: Tue, 29 Nov 2016 01:24:58 -0600 Subject: [petsc-users] pcfieldsplitting not working for VI In-Reply-To: <9D819EDC-C5D5-43C1-8344-0AF9741B9833@imperial.ac.uk> References: <9D819EDC-C5D5-43C1-8344-0AF9741B9833@imperial.ac.uk> Message-ID: Lawrence, I added the following line: rs_solver.setDM(a._dm) And it gives this error: Traceback (most recent call last): File "sphere.py", line 128, in rs_solver.setDM(a._dm) AttributeError: 'Form' object has no attribute '_dm' Thanks, Justin On Tue, Nov 29, 2016 at 1:12 AM, Lawrence Mitchell < lawrence.mitchell at imperial.ac.uk> wrote: > > > > On 29 Nov 2016, at 02:02, Justin Chang wrote: > > > > Why is this happening? It seems to me VINEWTONRSLS is not understanding > that I have a two-field formulation. > > For the built in solvers, we set up a dmshell on the snes that knows how > to do field splitting. Because you set your snes up by hand, it isn't > available. You'll need to call snes.setDM. The mixed finctionspace provides > the correct dm via a ._dm property I think. > > Lawrence > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jychang48 at gmail.com Tue Nov 29 01:40:32 2016 From: jychang48 at gmail.com (Justin Chang) Date: Tue, 29 Nov 2016 01:40:32 -0600 Subject: [petsc-users] pcfieldsplitting not working for VI In-Reply-To: References: <9D819EDC-C5D5-43C1-8344-0AF9741B9833@imperial.ac.uk> Message-ID: FWIW I ended up doing this: rs_solver.setDM(W._dm()) and was left with this error: Traceback (most recent call last): File "sphere.py", line 180, in virs() File "sphere.py", line 163, in virs rs_solver.solve(None,sol_vec) File "PETSc/SNES.pyx", line 537, in petsc4py.PETSc.SNES.solve (src/petsc4py.PETSc.c:170012) petsc4py.PETSc.Error: error code 75 [0] SNESSolve() line 4060 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/snes/interface/snes.c [0] SNESSolve_VINEWTONRSLS() line 424 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/snes/impls/vi/rs/virs.c [0] MatGetSubMatrix() line 7929 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/mat/interface/matrix.c [0] MatGetSubMatrix_Nest() line 451 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/mat/impls/nest/matnest.c [0] MatNestFindSubMat() line 424 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/mat/impls/nest/matnest.c [0] MatNestFindIS() line 363 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/mat/impls/nest/matnest.c [0] Arguments are incompatible [0] Could not find index set I must be doing something wrong here. Justin On Tue, Nov 29, 2016 at 1:24 AM, Justin Chang wrote: > Lawrence, > > I added the following line: > > rs_solver.setDM(a._dm) > > And it gives this error: > > Traceback (most recent call last): > File "sphere.py", line 128, in > rs_solver.setDM(a._dm) > AttributeError: 'Form' object has no attribute '_dm' > > Thanks, > Justin > > On Tue, Nov 29, 2016 at 1:12 AM, Lawrence Mitchell < > lawrence.mitchell at imperial.ac.uk> wrote: > >> >> >> > On 29 Nov 2016, at 02:02, Justin Chang wrote: >> > >> > Why is this happening? It seems to me VINEWTONRSLS is not understanding >> that I have a two-field formulation. >> >> For the built in solvers, we set up a dmshell on the snes that knows how >> to do field splitting. Because you set your snes up by hand, it isn't >> available. You'll need to call snes.setDM. The mixed finctionspace provides >> the correct dm via a ._dm property I think. >> >> Lawrence >> > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From lawrence.mitchell at imperial.ac.uk Tue Nov 29 02:29:58 2016 From: lawrence.mitchell at imperial.ac.uk (Lawrence Mitchell) Date: Tue, 29 Nov 2016 08:29:58 +0000 Subject: [petsc-users] pcfieldsplitting not working for VI In-Reply-To: References: <9D819EDC-C5D5-43C1-8344-0AF9741B9833@imperial.ac.uk> Message-ID: <33B00459-E98A-4AE0-B5A4-54E20F075C68@imperial.ac.uk> I suspect this is not a petsc issue per se. Shall we migrate this to the firedrake list? Lawrence > On 29 Nov 2016, at 07:40, Justin Chang wrote: > > FWIW I ended up doing this: > > rs_solver.setDM(W._dm()) > > and was left with this error: > > Traceback (most recent call last): > File "sphere.py", line 180, in > virs() > File "sphere.py", line 163, in virs > rs_solver.solve(None,sol_vec) > File "PETSc/SNES.pyx", line 537, in petsc4py.PETSc.SNES.solve (src/petsc4py.PETSc.c:170012) > petsc4py.PETSc.Error: error code 75 > [0] SNESSolve() line 4060 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/snes/interface/snes.c > [0] SNESSolve_VINEWTONRSLS() line 424 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/snes/impls/vi/rs/virs.c > [0] MatGetSubMatrix() line 7929 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/mat/interface/matrix.c > [0] MatGetSubMatrix_Nest() line 451 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/mat/impls/nest/matnest.c > [0] MatNestFindSubMat() line 424 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/mat/impls/nest/matnest.c > [0] MatNestFindIS() line 363 in /private/var/folders/92/1kh0g4kn2z50fnwsmf8s269w0000gn/T/pip-gYEj0p-build/src/mat/impls/nest/matnest.c > [0] Arguments are incompatible > [0] Could not find index set > > I must be doing something wrong here. > > Justin > >> On Tue, Nov 29, 2016 at 1:24 AM, Justin Chang wrote: >> Lawrence, >> >> I added the following line: >> >> rs_solver.setDM(a._dm) >> >> And it gives this error: >> >> Traceback (most recent call last): >> File "sphere.py", line 128, in >> rs_solver.setDM(a._dm) >> AttributeError: 'Form' object has no attribute '_dm' >> >> Thanks, >> Justin >> >>> On Tue, Nov 29, 2016 at 1:12 AM, Lawrence Mitchell wrote: >>> >>> >>> > On 29 Nov 2016, at 02:02, Justin Chang wrote: >>> > >>> > Why is this happening? It seems to me VINEWTONRSLS is not understanding that I have a two-field formulation. >>> >>> For the built in solvers, we set up a dmshell on the snes that knows how to do field splitting. Because you set your snes up by hand, it isn't available. You'll need to call snes.setDM. The mixed finctionspace provides the correct dm via a ._dm property I think. >>> >>> Lawrence >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dave.mayhem23 at gmail.com Tue Nov 29 02:37:13 2016 From: dave.mayhem23 at gmail.com (Dave May) Date: Tue, 29 Nov 2016 08:37:13 +0000 Subject: [petsc-users] How do I Ensure that Two DMDA Objects Are Coupled Correctly? In-Reply-To: References: Message-ID: For collocated variables, I recommend you use the function DMDAGetReducedDMDA() http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMDAGetReducedDMDA.html That's the simplest option. In general, if the 2 dmdas have the same number of points in each direction, and you let petsc determine the partitions when you called DMDACreate3d(), they will have the same layout in parallel. You can confirm they overlap using the returned values from DMDAGetCorners() and DMDAGetGhostCorners(). Alternatively you can specify the layout yourself when you create the DMDAs using the lx[] ly[] lz[] arrays. See http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/DM/DMDACreate3d.html Thanks Dave On Tue, 29 Nov 2016 at 07:58, Clark C Pederson wrote: > Dear all, > > I'm writing a simple solver for the time-dependent incompressible > Navier-Stokes equations, using a structured grid and a fractional step > approach. Specifically, I'm following the approach of Kim and Moin, from > their 1985 paper. To those who are unfamiliar with fractional step methods, > you separate out the equation solving process into multiple steps. In the > first step, you advance your velocity fields in time to obtain an > "uncorrected" velocity. In the second step, you compute a pressure-like > term using the uncorrected velocities. In the third step, you compute the > correct velocities using the pressure-like term. > > This lead me to my question: There's two types of data I need to work with > in different ways. The first is the velocity field (u,v,w), which needs to > be updated using time-stepping routines. The second is the pressure-like > term, which is solved for in a Poisson equation. What is the best way to > couple these two fields, using distributed arrays? > > The suggestion here: ( > http://lists.mcs.anl.gov/pipermail/petsc-users/2013-October/019022.html) > is to use two DMDAs, one for the velocities with 3 DoF and one for the > pressures with 1 DoF. This seems like the simplest way to work with the > problem, aside from one problem: when the two arrays need to interface, how > do I ensure that the local processes align? In other words, how do I make > sure that my local array p[k][j][i] can pull the correct information from > the local vel[k][j][i].u etc. array locations? The points would be > identical or neighboring points on the structured grid, but they would be > part of two different DMDA objects. How do I make sure that each processor > has the data it needs? > > I've looked in the manual, examples, and the mailing list, but I couldn't > find anything that answered this question. The answer may be very simple, > so any help is appreciated. > > Thanks, > Clark Pederson > -------------- next part -------------- An HTML attachment was scrubbed... URL: From fande.kong at inl.gov Tue Nov 29 15:09:17 2016 From: fande.kong at inl.gov (Kong, Fande) Date: Tue, 29 Nov 2016 14:09:17 -0700 Subject: [petsc-users] superlu_dist issue Message-ID: Hi All, I think we have been discussing this topic for a while in other threads. But I still did not get yet. PETSc uses 'SamePattern' as the default FactPattern. Some test cases in MOOSE fail with this default option, but I can make these tests pass if I set the FactPattern as 'SamePattern_SameRowPerm' by using -mat_superlu_dist_fact SamePattern_SameRowPerm. Does this make sense mathematically? I can not understand. 'SamePattern' should be more general than 'SamePattern_SameRowPerm'. In other words, if something works with 'SamePattern_SameRowPerm', it definitely should work with 'SamePattern' too. Thanks as always. Fande, -------------- next part -------------- An HTML attachment was scrubbed... URL: From jed at jedbrown.org Wed Nov 30 00:44:55 2016 From: jed at jedbrown.org (Jed Brown) Date: Tue, 29 Nov 2016 23:44:55 -0700 Subject: [petsc-users] Petsc with Windows In-Reply-To: References: Message-ID: <877f7l5uvs.fsf@jedbrown.org> Elaine Tang writes: > I am developing some software on windows that would like to utilize petsc > library. Currently I have petsc library configured on cygwin on my windows > machine. This is probably a better choice than Cygwin going forward. https://msdn.microsoft.com/en-us/commandline/wsl/about I don't know to what extent PETSc users have experimented with this feature, but it should make it easier to build and distribute PETSc. > Is there any binary of petsc for windows so that the software that I > develop will be more portable and can be run on other windows machine as > well? Are you developing an application or a library? -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 800 bytes Desc: not available URL: From mirzadeh at gmail.com Wed Nov 30 02:00:02 2016 From: mirzadeh at gmail.com (Mohammad Mirzadeh) Date: Wed, 30 Nov 2016 08:00:02 +0000 Subject: [petsc-users] Petsc with Windows In-Reply-To: <877f7l5uvs.fsf@jedbrown.org> References: <877f7l5uvs.fsf@jedbrown.org> Message-ID: May I propose docker as an alternative approach? https://www.docker.com There are already petsc images and creating your own environment is not that hard. As a bonus you get a cross platform solution ... unless your application is windows specific in which case docker might not be the best way to go. On Wed, Nov 30, 2016 at 1:45 AM Jed Brown wrote: > Elaine Tang writes: > > > I am developing some software on windows that would like to utilize petsc > > library. Currently I have petsc library configured on cygwin on my > windows > > machine. > > This is probably a better choice than Cygwin going forward. > > https://msdn.microsoft.com/en-us/commandline/wsl/about > > I don't know to what extent PETSc users have experimented with this > feature, but it should make it easier to build and distribute PETSc. > > > Is there any binary of petsc for windows so that the software that I > > develop will be more portable and can be run on other windows machine as > > well? > > Are you developing an application or a library? > -- Sent from Gmail Mobile -------------- next part -------------- An HTML attachment was scrubbed... URL: From kaus at uni-mainz.de Wed Nov 30 02:03:12 2016 From: kaus at uni-mainz.de (Boris Kaus) Date: Wed, 30 Nov 2016 09:03:12 +0100 Subject: [petsc-users] Petsc with Windows In-Reply-To: <877f7l5uvs.fsf@jedbrown.org> References: <877f7l5uvs.fsf@jedbrown.org> Message-ID: > This is probably a better choice than Cygwin going forward. > > https://msdn.microsoft.com/en-us/commandline/wsl/about > > I don't know to what extent PETSc users have experimented with this > feature, but it should make it easier to build and distribute PETSc. We have tried this in Mainz, and PETSc (with MUMPS/SUPERLU_DIST/mpich) compiles out of the box with the new command-line option under windows 10. It?s not as fast as linux/mac, but does the job This won?t make me give up my mac yet, but windows seems to head in the right direction. Boris _______________________________________________________ Boris J.P. Kaus Institute of Geosciences, Center for Computational Sciences & Center for Volcanoes and Atmosphere in Magmatic Open Systems Johannes Gutenberg University of Mainz, Mainz, Germany Office: 00-285 Tel: +49.6131.392.4527 http://www.geo-dynamics.eu _______________________________________________________ From e.tadeu at gmail.com Wed Nov 30 05:26:04 2016 From: e.tadeu at gmail.com (E. Tadeu) Date: Wed, 30 Nov 2016 09:26:04 -0200 Subject: [petsc-users] Petsc with Windows In-Reply-To: References: Message-ID: Hi Elaine, The PETSc configured/built in Cygwin can be normally used outside of it. It can either be statically linked with your software, or linked as a .DLL and deployed normally :). On Mon, Nov 28, 2016 at 1:49 PM, Elaine Tang wrote: > Hi, > > I am developing some software on windows that would like to utilize petsc > library. Currently I have petsc library configured on cygwin on my windows > machine. > > Is there any binary of petsc for windows so that the software that I > develop will be more portable and can be run on other windows machine as > well? > > Thanks! > -- > Elaine Tang > -------------- next part -------------- An HTML attachment was scrubbed... URL: From e.tadeu at gmail.com Wed Nov 30 05:29:36 2016 From: e.tadeu at gmail.com (E. Tadeu) Date: Wed, 30 Nov 2016 09:29:36 -0200 Subject: [petsc-users] Petsc with Windows In-Reply-To: References: <877f7l5uvs.fsf@jedbrown.org> Message-ID: On Wed, Nov 30, 2016 at 6:03 AM, Boris Kaus wrote: > > > This is probably a better choice than Cygwin going forward. > > > > https://msdn.microsoft.com/en-us/commandline/wsl/about > > > > I don't know to what extent PETSc users have experimented with this > > feature, but it should make it easier to build and distribute PETSc. > We have tried this in Mainz, and PETSc (with MUMPS/SUPERLU_DIST/mpich) > compiles out of the box with the new command-line option under windows 10. > It?s not as fast as linux/mac, but does the job > Good to hear this, Boris :) I'm very interested, do you know how much the performance hit is? Perhaps by using BLAS from MKL it could be faster? Do you know what compiler is being used? Thanks! -------------- next part -------------- An HTML attachment was scrubbed... URL: From niko.karin at gmail.com Wed Nov 30 07:27:47 2016 From: niko.karin at gmail.com (Karin&NiKo) Date: Wed, 30 Nov 2016 14:27:47 +0100 Subject: [petsc-users] Check PETSc's saddle point structure Message-ID: Dear PETSc team, I am using the "-pc_fieldsplit_detect_saddle_point" feature of fieldsplit in order to solve a Stokes-like problem. I would like to check the saddle point structure automatically detected by PETSc. o Is there a way of printing the automatically built IS? o Are there some printings with "-ksp_view" that could give some insight on the fields built by PETSc? Thanks in advance, Nicolas -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Wed Nov 30 07:38:25 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 30 Nov 2016 07:38:25 -0600 Subject: [petsc-users] Check PETSc's saddle point structure In-Reply-To: References: Message-ID: On Wed, Nov 30, 2016 at 7:27 AM, Karin&NiKo wrote: > Dear PETSc team, > > I am using the "-pc_fieldsplit_detect_saddle_point" feature of fieldsplit > in order to solve a Stokes-like problem. > > I would like to check the saddle point structure automatically detected by > PETSc. > o Is there a way of printing the automatically built IS? > The -ksp_view will give you the sizes. If you want the actual IS you can use http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/PC/PCFieldSplitGetIS.html after the solve. Matt > o Are there some printings with "-ksp_view" that could give some > insight on the fields built by PETSc? > > Thanks in advance, > Nicolas > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jychang48 at gmail.com Wed Nov 30 20:27:14 2016 From: jychang48 at gmail.com (Justin Chang) Date: Wed, 30 Nov 2016 20:27:14 -0600 Subject: [petsc-users] Use previous solution when encountering "DIVERGED_LINE_SEARCH" Message-ID: Hi all, I am running some transient simulations using SNESVINEWTONRSLS. At certain timesteps, I get a "DIVERGED_LINE_SEARCH" which essentially "resets" my solution to zero and messes everything up. I notice that this happens when the SNES Function norm no longer decreases, and if I were to manually terminate the solver right before the final iteration I get the answer I want. Is there a way to "detect" this error and use the solution from the previous non-failing iteration? Setting a fixed maximum iteration doesn't seem reasonble because every time level will require different numbers of iterations to converge. Thanks, Justin -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Wed Nov 30 20:35:57 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 30 Nov 2016 20:35:57 -0600 Subject: [petsc-users] Use previous solution when encountering "DIVERGED_LINE_SEARCH" In-Reply-To: References: Message-ID: On Wed, Nov 30, 2016 at 8:27 PM, Justin Chang wrote: > Hi all, > > I am running some transient simulations using SNESVINEWTONRSLS. At > certain timesteps, I get a "DIVERGED_LINE_SEARCH" which essentially > "resets" my solution to zero and messes everything up. I notice that this > happens when the SNES Function norm no longer decreases, and if I were to > manually terminate the solver right before the final iteration I get the > answer I want. > Yes, its possible, however isn't that a dangerous way to terminate? Couldn't you terminate on stagnation? Thanks, Matt > Is there a way to "detect" this error and use the solution from the > previous non-failing iteration? Setting a fixed maximum iteration doesn't > seem reasonble because every time level will require different numbers of > iterations to converge. > > Thanks, > Justin > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jychang48 at gmail.com Wed Nov 30 20:38:56 2016 From: jychang48 at gmail.com (Justin Chang) Date: Wed, 30 Nov 2016 20:38:56 -0600 Subject: [petsc-users] Use previous solution when encountering "DIVERGED_LINE_SEARCH" In-Reply-To: References: Message-ID: By manually terminating I meant setting -snes_max_it to 5 if I know DIVERGED_LINE_SEARCH occurs after 6 iterations. In a transient simulation I cannot do this On Wed, Nov 30, 2016 at 8:35 PM, Matthew Knepley wrote: > On Wed, Nov 30, 2016 at 8:27 PM, Justin Chang wrote: > >> Hi all, >> >> I am running some transient simulations using SNESVINEWTONRSLS. At >> certain timesteps, I get a "DIVERGED_LINE_SEARCH" which essentially >> "resets" my solution to zero and messes everything up. I notice that this >> happens when the SNES Function norm no longer decreases, and if I were to >> manually terminate the solver right before the final iteration I get the >> answer I want. >> > > Yes, its possible, however isn't that a dangerous way to terminate? > Couldn't you terminate on stagnation? > > Thanks, > > Matt > > >> Is there a way to "detect" this error and use the solution from the >> previous non-failing iteration? Setting a fixed maximum iteration doesn't >> seem reasonble because every time level will require different numbers of >> iterations to converge. >> >> Thanks, >> Justin >> > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Wed Nov 30 20:48:39 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 30 Nov 2016 20:48:39 -0600 Subject: [petsc-users] Use previous solution when encountering "DIVERGED_LINE_SEARCH" In-Reply-To: References: Message-ID: On Wed, Nov 30, 2016 at 8:38 PM, Justin Chang wrote: > By manually terminating I meant setting -snes_max_it to 5 if I know DIVERGED_LINE_SEARCH > occurs after 6 iterations. In a transient simulation I cannot do this > Let me elaborate. I mean that using DIVERGED_LINE_SEARCH as an indication of convergence is dicey. It may be that in the problem you looked at this was true, but I see no reason to believe its true in general. Why does your residual quit decreasing? Thanks, Matt > On Wed, Nov 30, 2016 at 8:35 PM, Matthew Knepley > wrote: > >> On Wed, Nov 30, 2016 at 8:27 PM, Justin Chang >> wrote: >> >>> Hi all, >>> >>> I am running some transient simulations using SNESVINEWTONRSLS. At >>> certain timesteps, I get a "DIVERGED_LINE_SEARCH" which essentially >>> "resets" my solution to zero and messes everything up. I notice that this >>> happens when the SNES Function norm no longer decreases, and if I were to >>> manually terminate the solver right before the final iteration I get the >>> answer I want. >>> >> >> Yes, its possible, however isn't that a dangerous way to terminate? >> Couldn't you terminate on stagnation? >> >> Thanks, >> >> Matt >> >> >>> Is there a way to "detect" this error and use the solution from the >>> previous non-failing iteration? Setting a fixed maximum iteration doesn't >>> seem reasonble because every time level will require different numbers of >>> iterations to converge. >>> >>> Thanks, >>> Justin >>> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From jychang48 at gmail.com Wed Nov 30 20:54:29 2016 From: jychang48 at gmail.com (Justin Chang) Date: Wed, 30 Nov 2016 20:54:29 -0600 Subject: [petsc-users] Use previous solution when encountering "DIVERGED_LINE_SEARCH" In-Reply-To: References: Message-ID: Generally speaking, yes. But this is VIRS where I am enforcing maximum principles. From what I have seen, the residual typically exhibit this behavior if there are very few violations in the first place. How would I "terminate on stagnation"? On Wed, Nov 30, 2016 at 8:48 PM, Matthew Knepley wrote: > On Wed, Nov 30, 2016 at 8:38 PM, Justin Chang wrote: > >> By manually terminating I meant setting -snes_max_it to 5 if I know DIVERGED_LINE_SEARCH >> occurs after 6 iterations. In a transient simulation I cannot do this >> > > Let me elaborate. I mean that using DIVERGED_LINE_SEARCH as an indication > of convergence is dicey. It may be that in the problem > you looked at this was true, but I see no reason to believe its true in > general. Why does your residual quit decreasing? > > Thanks, > > Matt > > >> On Wed, Nov 30, 2016 at 8:35 PM, Matthew Knepley >> wrote: >> >>> On Wed, Nov 30, 2016 at 8:27 PM, Justin Chang >>> wrote: >>> >>>> Hi all, >>>> >>>> I am running some transient simulations using SNESVINEWTONRSLS. At >>>> certain timesteps, I get a "DIVERGED_LINE_SEARCH" which essentially >>>> "resets" my solution to zero and messes everything up. I notice that this >>>> happens when the SNES Function norm no longer decreases, and if I were to >>>> manually terminate the solver right before the final iteration I get the >>>> answer I want. >>>> >>> >>> Yes, its possible, however isn't that a dangerous way to terminate? >>> Couldn't you terminate on stagnation? >>> >>> Thanks, >>> >>> Matt >>> >>> >>>> Is there a way to "detect" this error and use the solution from the >>>> previous non-failing iteration? Setting a fixed maximum iteration doesn't >>>> seem reasonble because every time level will require different numbers of >>>> iterations to converge. >>>> >>>> Thanks, >>>> Justin >>>> >>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jychang48 at gmail.com Wed Nov 30 21:23:27 2016 From: jychang48 at gmail.com (Justin Chang) Date: Wed, 30 Nov 2016 21:23:27 -0600 Subject: [petsc-users] Use previous solution when encountering "DIVERGED_LINE_SEARCH" In-Reply-To: References: Message-ID: Also, -snes_stol does not seem to work for vinewtonrsls? On Wed, Nov 30, 2016 at 8:54 PM, Justin Chang wrote: > Generally speaking, yes. But this is VIRS where I am enforcing maximum > principles. From what I have seen, the residual typically exhibit this > behavior if there are very few violations in the first place. > > How would I "terminate on stagnation"? > > On Wed, Nov 30, 2016 at 8:48 PM, Matthew Knepley > wrote: > >> On Wed, Nov 30, 2016 at 8:38 PM, Justin Chang >> wrote: >> >>> By manually terminating I meant setting -snes_max_it to 5 if I know DIVERGED_LINE_SEARCH >>> occurs after 6 iterations. In a transient simulation I cannot do this >>> >> >> Let me elaborate. I mean that using DIVERGED_LINE_SEARCH as an indication >> of convergence is dicey. It may be that in the problem >> you looked at this was true, but I see no reason to believe its true in >> general. Why does your residual quit decreasing? >> >> Thanks, >> >> Matt >> >> >>> On Wed, Nov 30, 2016 at 8:35 PM, Matthew Knepley >>> wrote: >>> >>>> On Wed, Nov 30, 2016 at 8:27 PM, Justin Chang >>>> wrote: >>>> >>>>> Hi all, >>>>> >>>>> I am running some transient simulations using SNESVINEWTONRSLS. At >>>>> certain timesteps, I get a "DIVERGED_LINE_SEARCH" which essentially >>>>> "resets" my solution to zero and messes everything up. I notice that this >>>>> happens when the SNES Function norm no longer decreases, and if I were to >>>>> manually terminate the solver right before the final iteration I get the >>>>> answer I want. >>>>> >>>> >>>> Yes, its possible, however isn't that a dangerous way to terminate? >>>> Couldn't you terminate on stagnation? >>>> >>>> Thanks, >>>> >>>> Matt >>>> >>>> >>>>> Is there a way to "detect" this error and use the solution from the >>>>> previous non-failing iteration? Setting a fixed maximum iteration doesn't >>>>> seem reasonble because every time level will require different numbers of >>>>> iterations to converge. >>>>> >>>>> Thanks, >>>>> Justin >>>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From knepley at gmail.com Wed Nov 30 21:42:50 2016 From: knepley at gmail.com (Matthew Knepley) Date: Wed, 30 Nov 2016 21:42:50 -0600 Subject: [petsc-users] Use previous solution when encountering "DIVERGED_LINE_SEARCH" In-Reply-To: References: Message-ID: On Wed, Nov 30, 2016 at 8:54 PM, Justin Chang wrote: > Generally speaking, yes. But this is VIRS where I am enforcing maximum > principles. From what I have seen, the residual typically exhibit this > behavior if there are very few violations in the first place. > So you are saying that if you have some constraints, you can have a situation where you cannot satisfy F(u) = 0? This seems wrong to me, but maybe I do not understand something. > How would I "terminate on stagnation"? > This is what I do not want. Matt > On Wed, Nov 30, 2016 at 8:48 PM, Matthew Knepley > wrote: > >> On Wed, Nov 30, 2016 at 8:38 PM, Justin Chang >> wrote: >> >>> By manually terminating I meant setting -snes_max_it to 5 if I know DIVERGED_LINE_SEARCH >>> occurs after 6 iterations. In a transient simulation I cannot do this >>> >> >> Let me elaborate. I mean that using DIVERGED_LINE_SEARCH as an indication >> of convergence is dicey. It may be that in the problem >> you looked at this was true, but I see no reason to believe its true in >> general. Why does your residual quit decreasing? >> >> Thanks, >> >> Matt >> >> >>> On Wed, Nov 30, 2016 at 8:35 PM, Matthew Knepley >>> wrote: >>> >>>> On Wed, Nov 30, 2016 at 8:27 PM, Justin Chang >>>> wrote: >>>> >>>>> Hi all, >>>>> >>>>> I am running some transient simulations using SNESVINEWTONRSLS. At >>>>> certain timesteps, I get a "DIVERGED_LINE_SEARCH" which essentially >>>>> "resets" my solution to zero and messes everything up. I notice that this >>>>> happens when the SNES Function norm no longer decreases, and if I were to >>>>> manually terminate the solver right before the final iteration I get the >>>>> answer I want. >>>>> >>>> >>>> Yes, its possible, however isn't that a dangerous way to terminate? >>>> Couldn't you terminate on stagnation? >>>> >>>> Thanks, >>>> >>>> Matt >>>> >>>> >>>>> Is there a way to "detect" this error and use the solution from the >>>>> previous non-failing iteration? Setting a fixed maximum iteration doesn't >>>>> seem reasonble because every time level will require different numbers of >>>>> iterations to converge. >>>>> >>>>> Thanks, >>>>> Justin >>>>> >>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: From bsmith at mcs.anl.gov Wed Nov 30 22:27:48 2016 From: bsmith at mcs.anl.gov (Barry Smith) Date: Wed, 30 Nov 2016 22:27:48 -0600 Subject: [petsc-users] Use previous solution when encountering "DIVERGED_LINE_SEARCH" In-Reply-To: References: Message-ID: <73758A96-A2FF-4AB3-A802-1322ACD5BC99@mcs.anl.gov> Justin, Could you provide more details or an example how > "DIVERGED_LINE_SEARCH" which essentially "resets" my solution to zero and messes everything up In the VI RSLS solver the code looks like if (lssucceed) { if (++snes->numFailures >= snes->maxFailures) { PetscBool ismin; snes->reason = SNES_DIVERGED_LINE_SEARCH; ierr = SNESVICheckLocalMin_Private(snes,snes->jacobian,F,X,gnorm,&ismin);CHKERRQ(ierr); if (ismin) snes->reason = SNES_DIVERGED_LOCAL_MIN; break; } } so it essentially just breaks out if the line search failed, I think it should leave whatever the "current" solution is and shouldn't "reset" the solution to zero. That is if it made some progress to the solution and then had a line search failure the "progress" to the solution should still be in the solution vector. Barry Of course the "current solution" may not be a good solution but the intention is that it contains whatever progress it did make and not zero so if you could provide something that helps us debug why it was zero we could hopefully fix the problem for you. > On Nov 30, 2016, at 8:27 PM, Justin Chang wrote: > > Hi all, > > I am running some transient simulations using SNESVINEWTONRSLS. At certain timesteps, I get a "DIVERGED_LINE_SEARCH" which essentially "resets" my solution to zero and messes everything up. I notice that this happens when the SNES Function norm no longer decreases, and if I were to manually terminate the solver right before the final iteration I get the answer I want. > > Is there a way to "detect" this error and use the solution from the previous non-failing iteration? Setting a fixed maximum iteration doesn't seem reasonble because every time level will require different numbers of iterations to converge. > > Thanks, > Justin